4-100228950-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100228950
  end: Position
    type: ExactPosition
    position: 100228950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13517
  bin: 6.25e1
  variant carriers: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11544
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

4-100228961-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100228961
  end: Position
    type: ExactPosition
    position: 100228961
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66700
  num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

4-100228962-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100228962
  end: Position
    type: ExactPosition
    position: 100228962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16498
  num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-100228979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100228979
  end: Position
    type: ExactPosition
    position: 100228979
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

4-100228982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100228982
  end: Position
    type: ExactPosition
    position: 100228982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
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4-100228991-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100228991
  end: Position
    type: ExactPosition
    position: 100228991
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: African
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  allele num: 10406
  num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
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site quality: ReadPosRankSum

4-100229000-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229000
  end: Position
    type: ExactPosition
    position: 100229000
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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population: African
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  allele num: 10406
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
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site quality: MQ
site quality: VQSLOD
site quality: QD
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site quality: ClippingRankSum
site quality: DP
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4-100229003-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229003
  end: Position
    type: ExactPosition
    position: 100229003
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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  allele num: 10406
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
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site quality: MQRankSum
site quality: FS
site quality: DP
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site quality: QD
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4-100229011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229011
  end: Position
    type: ExactPosition
    position: 100229011
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: African
  type: Population
  allele count: 1
  allele frequency: 9.609840476648087e-5
  allele num: 10406
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
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site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
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site quality: DP
site quality: QD

4-100229012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229012
  end: Position
    type: ExactPosition
    position: 100229012
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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population: European (Non-Finnish)
  type: Population
  allele count: 4
  allele frequency: 5.997181324777355e-5
  allele num: 66698
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

4-100229016-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229016
  end: Position
    type: ExactPosition
    position: 100229016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 12
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: South Asian
  type: Population
  allele count: 70
  allele frequency: 4.242938538004607e-3
  allele num: 16498
  num of homozygotes: 2
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
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4-100229017-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229017
  end: Position
    type: ExactPosition
    position: 100229017
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: protective
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  clinical significance: protective
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  clinical significance: protective
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  clinical significance: protective
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

4-100229018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229018
  end: Position
    type: ExactPosition
    position: 100229018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11560
  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

4-100229021-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229021
  end: Position
    type: ExactPosition
    position: 100229021
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: splice_region_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

4-100229023-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229023
  end: Position
    type: ExactPosition
    position: 100229023
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8650
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

4-100229027-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229027
  end: Position
    type: ExactPosition
    position: 100229027
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-100229028-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229028
  end: Position
    type: ExactPosition
    position: 100229028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

4-100229031-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229031
  end: Position
    type: ExactPosition
    position: 100229031
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 4.498695378340282e-5
  allele num: 66686
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

4-100229034-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229034
  end: Position
    type: ExactPosition
    position: 100229034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Finnish)
  type: Population
  allele count: 30
  allele frequency: 4.537205081669692e-3
  allele num: 6612
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

4-100229048-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229048
  end: Position
    type: ExactPosition
    position: 100229048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  allele num: 10394
  num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
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population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
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site quality: VQSLOD

4-100229060-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229060
  end: Position
    type: ExactPosition
    position: 100229060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  type: Population
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  allele frequency: 0.0e0
  allele num: 11544
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
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site quality: InbreedingCoeff
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site quality: VQSLOD
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4-100229063-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229063
  end: Position
    type: ExactPosition
    position: 100229063
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Finnish)
  type: Population
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  allele frequency: 0.0e0
  allele num: 6608
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
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site quality: FS
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4-100229064-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229064
  end: Position
    type: ExactPosition
    position: 100229064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66616
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
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4-100229065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100229065
  end: Position
    type: ExactPosition
    position: 100229065
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  num of homozygotes: 0
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population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
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site quality: DP
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4-100231455-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231455
  end: Position
    type: ExactPosition
    position: 100231455
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  allele num: 540
  num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
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population: African
population: European (Non-Finnish)
reference allele: T
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site quality: DP
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site quality: FS
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4-100231462-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231462
  end: Position
    type: ExactPosition
    position: 100231462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 214
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
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site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

4-100231469-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231469
  end: Position
    type: ExactPosition
    position: 100231469
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 214
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

4-100231480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231480
  end: Position
    type: ExactPosition
    position: 100231480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  type: Population
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  allele num: 786
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
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site quality: DP
site quality: ClippingRankSum
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4-100231494-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231494
  end: Position
    type: ExactPosition
    position: 100231494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 1
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population: East Asian
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  allele frequency: 0.0e0
  allele num: 790
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
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4-100231511-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231511
  end: Position
    type: ExactPosition
    position: 100231511
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 504
  num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
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site quality: VQSLOD
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4-100231512-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231512
  end: Position
    type: ExactPosition
    position: 100231512
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1114
  num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
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4-100231520-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231520
  end: Position
    type: ExactPosition
    position: 100231520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  allele num: 1072
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population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
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reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
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site quality: QD
site quality: FS
site quality: VQSLOD
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4-100231523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231523
  end: Position
    type: ExactPosition
    position: 100231523
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  num of homozygotes: 0
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population: Latino
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4-100231535-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231535
  end: Position
    type: ExactPosition
    position: 100231535
alternate allele: A
annotation: Annotation
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  consequence: NMD_transcript_variant
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  ensembl protein: ENSP00000425998
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  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 944
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
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site quality: VQSLOD

4-100231539-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231539
  end: Position
    type: ExactPosition
    position: 100231539
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1656
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
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site quality: DP
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4-100231556-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231556
  end: Position
    type: ExactPosition
    position: 100231556
alternate allele: G
annotation: Annotation
  canonical: true
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  allele num: 192
  num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
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site quality: DP
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site quality: FS
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4-100231875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231875
  end: Position
    type: ExactPosition
    position: 100231875
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
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  bin: 7.5e0
  variant carriers: 0
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  allele num: 65592
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population: South Asian
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4-100231876-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231876
  end: Position
    type: ExactPosition
    position: 100231876
alternate allele: T
annotation: Annotation
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  consequence: intron_variant
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  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
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  ensembl protein: ENSP00000306606
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  variant of: http://identifiers.org/hgnc/250
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 2
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14982
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

4-100231879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231879
  end: Position
    type: ExactPosition
    position: 100231879
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65652
  num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

4-100231882-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231882
  end: Position
    type: ExactPosition
    position: 100231882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 882
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

4-100231888-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231888
  end: Position
    type: ExactPosition
    position: 100231888
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15290
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
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site quality: QD

4-100231892-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231892
  end: Position
    type: ExactPosition
    position: 100231892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11432
  num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

4-100231893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231893
  end: Position
    type: ExactPosition
    position: 100231893
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 3.25e1
  variant carriers: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11428
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

4-100231908-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231908
  end: Position
    type: ExactPosition
    position: 100231908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21576
  bin: 9.75e1
  variant carriers: 1
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8620
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

4-100231912-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231912
  end: Position
    type: ExactPosition
    position: 100231912
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6592
  num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

4-100231916-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231916
  end: Position
    type: ExactPosition
    position: 100231916
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 9.25e1
  variant carriers: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

4-100231917-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231917
  end: Position
    type: ExactPosition
    position: 100231917
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 181
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.25e1
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genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 244
  bin: 8.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 21675
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

4-100231929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231929
  end: Position
    type: ExactPosition
    position: 100231929
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
population: East Asian
  type: Population
  allele count: 6
  allele frequency: 6.941230911614993e-4
  allele num: 8644
  num of homozygotes: 1
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

4-100231935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231935
  end: Position
    type: ExactPosition
    position: 100231935
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 906
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD

4-100231975-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231975
  end: Position
    type: ExactPosition
    position: 100231975
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
  all individuals: 3571
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population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10374
  num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

4-100231981-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231981
  end: Position
    type: ExactPosition
    position: 100231981
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11564
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

4-100231990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231990
  end: Position
    type: ExactPosition
    position: 100231990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6612
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
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4-100231991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231991
  end: Position
    type: ExactPosition
    position: 100231991
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: Other
  type: Population
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  allele frequency: 0.0e0
  allele num: 906
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
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site quality: VQSLOD
site quality: FS
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4-100231993-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231993
  end: Position
    type: ExactPosition
    position: 100231993
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8063
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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  num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
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site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
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4-100231994-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100231994
  end: Position
    type: ExactPosition
    position: 100231994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: African
  type: Population
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  allele frequency: 0.0e0
  allele num: 10376
  num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
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site quality: QD
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4-100232005-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232005
  end: Position
    type: ExactPosition
    position: 100232005
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
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  ensembl protein: ENSP00000306606
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  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  allele num: 16506
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population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
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site quality: InbreedingCoeff
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4-100232014-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232014
  end: Position
    type: ExactPosition
    position: 100232014
alternate allele: T
annotation: Annotation
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  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl protein: ENSP00000425998
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  variant of: http://identifiers.org/hgnc/250
filter: PASS
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  allele num: 66712
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population: South Asian
population: Latino
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population: European (Finnish)
reference allele: C
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4-100232024-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232024
  end: Position
    type: ExactPosition
    position: 100232024
alternate allele: A
annotation: Annotation
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  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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4-100232038-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
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  end: Position
    type: ExactPosition
    position: 100232038
alternate allele: C
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/250
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  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl protein: ENSP00000306606
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  variant of: http://identifiers.org/hgnc/250
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 906
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-100232043-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232043
  end: Position
    type: ExactPosition
    position: 100232043
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8654
  num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS

4-100232046-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232046
  end: Position
    type: ExactPosition
    position: 100232046
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 906
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
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4-100232048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232048
  end: Position
    type: ExactPosition
    position: 100232048
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 66720
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
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4-100232053-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232053
  end: Position
    type: ExactPosition
    position: 100232053
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.498800959232614e-5
  allele num: 66720
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ

4-100232068-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232068
  end: Position
    type: ExactPosition
    position: 100232068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 9.25e1
  variant carriers: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

4-100232073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232073
  end: Position
    type: ExactPosition
    position: 100232073
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11574
  num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-100232076-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232076
  end: Position
    type: ExactPosition
    position: 100232076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10326
  num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

4-100232080-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232080
  end: Position
    type: ExactPosition
    position: 100232080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11680
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 16510
  num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

4-100232083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232083
  end: Position
    type: ExactPosition
    position: 100232083
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11572
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
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4-100232084-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232084
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    type: ExactPosition
    position: 100232084
alternate allele: C
annotation: Annotation
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  ensembl protein: ENSP00000306606
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  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
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  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: Latino
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  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
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reference allele: T
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site quality: ReadPosRankSum
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site quality: VQSLOD
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4-100232090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232090
  end: Position
    type: ExactPosition
    position: 100232090
alternate allele: C
annotation: Annotation
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/250
filter: PASS
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population: East Asian
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4-100232094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232094
  end: Position
    type: ExactPosition
    position: 100232094
alternate allele: T
annotation: Annotation
  canonical: true
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  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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4-100232096-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232096
  end: Position
    type: ExactPosition
    position: 100232096
alternate allele: T
annotation: Annotation
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  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: NMD_transcript_variant
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
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  variant of: http://identifiers.org/hgnc/250
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genotype quality: GenotypeQuality
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population: Latino
  type: Population
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  allele frequency: 0.0e0
  allele num: 11568
  num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
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4-100232105-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232105
  end: Position
    type: ExactPosition
    position: 100232105
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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population: African
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  allele num: 10198
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
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population: Other
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site quality: ClippingRankSum
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4-100232634-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232634
  end: Position
    type: ExactPosition
    position: 100232634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
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population: European (Finnish)
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population: Latino
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4-100232636-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232636
  end: Position
    type: ExactPosition
    position: 100232636
alternate allele: A
annotation: Annotation
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  consequence: NMD_transcript_variant
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  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
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  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
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4-100232643-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232643
  end: Position
    type: ExactPosition
    position: 100232643
alternate allele: C
annotation: Annotation
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  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
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  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
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  ensembl protein: ENSP00000306606
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  variant of: http://identifiers.org/hgnc/250
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 6.25e1
  variant carriers: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11536
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

4-100232662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 100232662
  end: Position
    type: ExactPosition
    position: 100232662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000425998
  ensembl transcript: ENST00000506651
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000306606
  ensembl transcript: ENST00000305046
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000196616
  ensembl protein: ENSP00000378351
  ensembl transcript: ENST00000394887
  variant of: http://identifiers.org/hgnc/250
annotation: Annotation
  canonical: false
  consequence: intron_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000196616
  ensembl transcript: ENST00000515694
  variant of: http://identifiers.org/hgnc/250
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8652
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.937e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.232e0

FS
type: SiteQuality
SIO_000300: 5.949e0

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.554e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 2.807774e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.502e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.692e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.108e0

DP
type: SiteQuality
SIO_000300: 2.811109e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.1e-2

DP
type: SiteQuality
SIO_000300: 2.811619e6

FS
type: SiteQuality
SIO_000300: 1.275e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.55e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.421e0

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

FS
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 2.81536e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

VQSLOD
type: SiteQuality
SIO_000300: 5.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.77e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.81552e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.816e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 5.58e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.82e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

DP
type: SiteQuality
SIO_000300: 2.815904e6

MQ
type: SiteQuality
SIO_000300: 5.845e1

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-2

FS
type: SiteQuality
SIO_000300: 7.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.344e1

MQRankSum
type: SiteQuality
SIO_000300: 4.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.177e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.72e1

VQSLOD
type: SiteQuality
SIO_000300: -1.215e0

QD
type: SiteQuality
SIO_000300: 1.317e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.641e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 2.816232e6

MQRankSum
type: SiteQuality
SIO_000300: 3.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.95e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
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allele num: 904
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MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

FS
type: SiteQuality
SIO_000300: 6.879e0

DP
type: SiteQuality
SIO_000300: 2.81644e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.035e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.875e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.818181818181818e-4
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

VQSLOD
type: SiteQuality
SIO_000300: -4.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 4.955e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.853e1

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.288e1

African
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allele frequency: 6.726888333653661e-4
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele num: 8650
num of homozygotes: 0

Other
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allele num: 904
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

FS
type: SiteQuality
SIO_000300: 1.097e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

DP
type: SiteQuality
SIO_000300: 2.816744e6

VQSLOD
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

QD
type: SiteQuality
SIO_000300: 1.207e1

European (Non-Finnish)
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allele count: 246
allele frequency: 3.688045335971935e-3
allele num: 66702
num of homozygotes: 1

East Asian
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allele count: 6
allele frequency: 6.938020351526364e-4
allele num: 8648
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Other
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allele frequency: 7.743362831858407e-3
allele num: 904
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European (Finnish)
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allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

African
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allele count: 39
allele frequency: 3.748558246828143e-3
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 17
allele frequency: 1.47084270635058e-3
allele num: 11558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 5.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQ
type: SiteQuality
SIO_000300: 5.877e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 2.823075e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

QD
type: SiteQuality
SIO_000300: 1.158e1

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 1.514784294716432e-3
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 99
allele frequency: 8.564013840830449e-3
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 124
allele frequency: 1.85923771253786e-3
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 1946
allele frequency: 1.871513752644739e-1
allele num: 10398
num of homozygotes: 186

Other
type: Population
allele count: 8
allele frequency: 8.849557522123894e-3
allele num: 904
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BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

MQ
type: SiteQuality
SIO_000300: 5.841e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.486e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

DP
type: SiteQuality
SIO_000300: 2.861874e6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.174e0

QD
type: SiteQuality
SIO_000300: 1.235e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.89e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.803192e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.038241910365115e-3
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 45
allele frequency: 6.747031306225261e-4
allele num: 66696
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

QD
type: SiteQuality
SIO_000300: 1.216e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

DP
type: SiteQuality
SIO_000300: 2.804043e6

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998860433035446e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.712e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -7.428e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 2.802042e6

QD
type: SiteQuality
SIO_000300: 6.54e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.88e1

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 2.801117e6

FS
type: SiteQuality
SIO_000300: 5.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.269e0

VQSLOD
type: SiteQuality
SIO_000300: -9.679e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
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DP
type: SiteQuality
SIO_000300: 2.801088e6

VQSLOD
type: SiteQuality
SIO_000300: -2.768e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.16e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.596e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQ
type: SiteQuality
SIO_000300: 5.722e1

DP
type: SiteQuality
SIO_000300: 2.800359e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.227e0

FS
type: SiteQuality
SIO_000300: 3.797e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

QD
type: SiteQuality
SIO_000300: 1.0e1

South Asian
type: Population
allele count: 3
allele frequency: 1.818622696411251e-4
allele num: 16496
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.770340450086555e-4
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.989963661533137e-3
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 326
allele frequency: 4.888728930478076e-3
allele num: 66684
num of homozygotes: 4

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

DP
type: SiteQuality
SIO_000300: 2.804678e6

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 6.09e-1

FS
type: SiteQuality
SIO_000300: 1.887e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.745e1

FS
type: SiteQuality
SIO_000300: 2.222e0

DP
type: SiteQuality
SIO_000300: 2.787209e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.526e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

QD
type: SiteQuality
SIO_000300: 1.176e1

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.328e0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000570108320581e-5
allele num: 66654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.25e-1

DP
type: SiteQuality
SIO_000300: 2.767391e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.812e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

QD
type: SiteQuality
SIO_000300: 9.49e0

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

FS
type: SiteQuality
SIO_000300: 7.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001921229586936e-5
allele num: 66624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.34e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.27e-1

DP
type: SiteQuality
SIO_000300: 2.758628e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.075334143377886e-5
allele num: 16460
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.15e1

DP
type: SiteQuality
SIO_000300: 2.756463e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.427e0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.847e1

MQRankSum
type: SiteQuality
SIO_000300: 7.86e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

DP
type: SiteQuality
SIO_000300: 2.75366e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.452e0

FS
type: SiteQuality
SIO_000300: 5.93e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.319957761351637e-4
allele num: 7576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.24e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.34e-1

FS
type: SiteQuality
SIO_000300: 2.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.52e-2

QD
type: SiteQuality
SIO_000300: 9.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.689e-1

East Asian
type: Population
allele count: 1
allele frequency: 1.291989664082687e-3
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1752
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.37489e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e0

QD
type: SiteQuality
SIO_000300: 9.83e0

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

FS
type: SiteQuality
SIO_000300: 8.935e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.275510204081633e-3
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6854
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.034e0

DP
type: SiteQuality
SIO_000300: 4.49014e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.22e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.171e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.034e0

QD
type: SiteQuality
SIO_000300: 1.145e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.432254368375824e-4
allele num: 6982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1766
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

QD
type: SiteQuality
SIO_000300: 3.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.495e0

DP
type: SiteQuality
SIO_000300: 4.59006e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.150747986191024e-3
allele num: 1738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.294330830960394e-4
allele num: 7726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 2.581015199311729e-3
allele num: 6974
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.748251748251748e-3
allele num: 572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.27e-2

FS
type: SiteQuality
SIO_000300: 5.26e-1

DP
type: SiteQuality
SIO_000300: 4.56909e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.245e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1712
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.300728407908429e-4
allele num: 7688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6628
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 4.38937e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

FS
type: SiteQuality
SIO_000300: 2.479e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

QD
type: SiteQuality
SIO_000300: 8.69e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 4.39391e5

VQSLOD
type: SiteQuality
SIO_000300: -2.216e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.74e0

DP
type: SiteQuality
SIO_000300: 4.23149e5

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.315097317201473e-4
allele num: 7604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1690
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.16671e5

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.52e-2

FS
type: SiteQuality
SIO_000300: 5.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.35e-1

QD
type: SiteQuality
SIO_000300: 4.75e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.743983257760725e-4
allele num: 5734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7524
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e0

DP
type: SiteQuality
SIO_000300: 3.93842e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.338e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

QD
type: SiteQuality
SIO_000300: 1.176e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.327e0

FS
type: SiteQuality
SIO_000300: 4.584e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.327e0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
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VQSLOD
type: SiteQuality
SIO_000300: -2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 3.88992e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.31e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.86150409530901e-4
allele num: 5372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

DP
type: SiteQuality
SIO_000300: 3.64784e5

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.519999999999999e-2

South Asian
type: Population
allele count: 1
allele frequency: 6.688068485821294e-5
allele num: 14952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

DP
type: SiteQuality
SIO_000300: 2.139272e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 2.087e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.614e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.048873441263453e-5
allele num: 65598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 880
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.01e-1

FS
type: SiteQuality
SIO_000300: 8.619999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.247e-1

DP
type: SiteQuality
SIO_000300: 2.141719e6

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

QD
type: SiteQuality
SIO_000300: 1.422e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

South Asian
type: Population
allele count: 3
allele frequency: 1.99203187250996e-4
allele num: 15060
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.167133520074697e-3
allele num: 8568
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.61e0

FS
type: SiteQuality
SIO_000300: 8.53e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 1.486e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

DP
type: SiteQuality
SIO_000300: 2.149991e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.646284726837697e-5
allele num: 15046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.134e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.229e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.247e0

DP
type: SiteQuality
SIO_000300: 2.160508e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519387383007172e-5
allele num: 65816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.212345e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.645e0

VQSLOD
type: SiteQuality
SIO_000300: -5.821e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65870
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
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South Asian
type: Population
allele count: 1
allele frequency: 6.504488096786782e-5
allele num: 15374
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QD
type: SiteQuality
SIO_000300: 1.33e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 9.837e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 2.222398e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.651e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.742e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15394
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518602885345482e-5
allele num: 65850
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 2.224921e6

VQSLOD
type: SiteQuality
SIO_000300: -1.758e0

MQ
type: SiteQuality
SIO_000300: 5.894e1

MQRankSum
type: SiteQuality
SIO_000300: -1.157e0

QD
type: SiteQuality
SIO_000300: 1.433e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-1

FS
type: SiteQuality
SIO_000300: 1.0195e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66212
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Other
type: Population
allele count: 0
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allele num: 896
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African
type: Population
allele count: 1
allele frequency: 9.823182711198428e-5
allele num: 10180
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.548e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 1.992e0

MQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

DP
type: SiteQuality
SIO_000300: 2.255095e6

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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South Asian
type: Population
allele count: 0
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allele num: 16158
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 1.1961e1

VQSLOD
type: SiteQuality
SIO_000300: -3.559e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.56e0

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.506e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e0

DP
type: SiteQuality
SIO_000300: 2.260139e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.241e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
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MQ
type: SiteQuality
SIO_000300: 5.864e1

VQSLOD
type: SiteQuality
SIO_000300: -1.389e0

QD
type: SiteQuality
SIO_000300: 1.359e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

FS
type: SiteQuality
SIO_000300: 6.428e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.52e-1

DP
type: SiteQuality
SIO_000300: 2.264002e6

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

Latino
type: Population
allele count: 21
allele frequency: 1.828631138975967e-3
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.024459304777396e-5
allele num: 66396
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Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
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African
type: Population
allele count: 241
allele frequency: 2.35167837626854e-2
allele num: 10248
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.467e1

MQ
type: SiteQuality
SIO_000300: 5.889e1

FS
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 2.272689e6

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
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Other
type: Population
allele count: 0
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MQ
type: SiteQuality
SIO_000300: 5.897e1

FS
type: SiteQuality
SIO_000300: 4.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 7.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.48e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.265e0

DP
type: SiteQuality
SIO_000300: 2.277592e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

QD
type: SiteQuality
SIO_000300: 1.529e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.67e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.16e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.279247e6

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 8.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.429e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
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MQRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 5.892e1

QD
type: SiteQuality
SIO_000300: 1.49e1

DP
type: SiteQuality
SIO_000300: 2.282774e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

FS
type: SiteQuality
SIO_000300: 2.542e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.659e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
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Other
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VQSLOD
type: SiteQuality
SIO_000300: -3.572e0

QD
type: SiteQuality
SIO_000300: 1.536e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.78e-1

FS
type: SiteQuality
SIO_000300: 5.298e0

MQ
type: SiteQuality
SIO_000300: 5.469e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.713e0

MQRankSum
type: SiteQuality
SIO_000300: -5.027e0

DP
type: SiteQuality
SIO_000300: 2.283192e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

East Asian
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allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

Latino
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Other
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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FS
type: SiteQuality
SIO_000300: 3.482e0

MQRankSum
type: SiteQuality
SIO_000300: -4.469e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.161e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.522e0

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

DP
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SIO_000300: 2.283503e6

MQ
type: SiteQuality
SIO_000300: 5.467e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49734656552634e-5
allele num: 66706
num of homozygotes: 0

Latino
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allele count: 0
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South Asian
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allele count: 4
allele frequency: 2.42306760358614e-4
allele num: 16508
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.81881264456438e-4
allele num: 10376
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.185e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 906
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VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.284185e6

FS
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
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allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.063e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.416e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.284194e6

QD
type: SiteQuality
SIO_000300: 1.335e1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.353e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.93e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998141152485459e-5
allele num: 66708
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.212e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.08e-1

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

FS
type: SiteQuality
SIO_000300: 0.0e0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 31
allele frequency: 3.582158539403744e-3
allele num: 8654
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European (Finnish)
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VQSLOD
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DP
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InbreedingCoeff
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MQ
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.081e1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
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European (Non-Finnish)
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allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Other
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South Asian
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allele count: 0
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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MQ
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SIO_000300: 5.929e1

InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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MQRankSum
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DP
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QD
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.467e0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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South Asian
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MQRankSum
type: SiteQuality
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ClippingRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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South Asian
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allele frequency: 6.05766900896535e-5
allele num: 16508
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Other
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allele frequency: 0.0e0
allele num: 906
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10380
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.485e0

European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10380
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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Latino
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DP
type: SiteQuality
SIO_000300: 2.286521e6

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
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Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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VQSLOD
type: SiteQuality
SIO_000300: -5.499000000000001e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.873e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.476e0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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Latino
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African
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South Asian
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allele count: 0
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.304e1

MQ
type: SiteQuality
SIO_000300: 5.922e1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 1.728011059270779e-4
allele num: 11574
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African
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.09e-1

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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Other
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allele count: 0
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allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.31e-1

Other
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
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European (Non-Finnish)
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allele frequency: 1.498800959232614e-5
allele num: 66720
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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BaseQRankSum
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MQRankSum
type: SiteQuality
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FS
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QD
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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Latino
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African
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allele frequency: 1.940240589833139e-4
allele num: 10308
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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QD
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MQRankSum
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MQ
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DP
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ClippingRankSum
type: SiteQuality
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Other
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allele num: 906
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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European (Non-Finnish)
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allele count: 10
allele frequency: 1.498800959232614e-4
allele num: 66720
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South Asian
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VQSLOD
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InbreedingCoeff
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DP
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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European (Finnish)
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allele num: 6614
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East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
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African
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South Asian
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Other
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.285212e6

South Asian
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East Asian
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allele count: 0
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 2.997601918465228e-5
allele num: 66720
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African
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MQ
type: SiteQuality
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.284604e6

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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Latino
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South Asian
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East Asian
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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Other
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allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.997691777331455e-5
allele num: 66718
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African
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East Asian
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.92e-1

DP
type: SiteQuality
SIO_000300: 2.28398e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.764e0

FS
type: SiteQuality
SIO_000300: 1.647e0

MQRankSum
type: SiteQuality
SIO_000300: -2.303e0

QD
type: SiteQuality
SIO_000300: 1.194e1

DP
type: SiteQuality
SIO_000300: 2.283479e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.085e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.023e0

QD
type: SiteQuality
SIO_000300: 1.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.273e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.227e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

DP
type: SiteQuality
SIO_000300: 3.676489e6

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 3.677543e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

QD
type: SiteQuality
SIO_000300: 1.238e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 4.752e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.213e0

DP
type: SiteQuality
SIO_000300: 3.683588e6

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.541e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.11e0

MQRankSum
type: SiteQuality
SIO_000300: -6.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.0e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66432
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.218132073125233e-5
allele num: 16082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.058e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.06e-1