An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.
Quaternary structure independent folding of voltage-gated ion channel pore domain subunits.
Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria.
Degradation of polyphosphates by polyphosphate kinases from Ruegeria pomeroyi.
Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks.
Ecological genomics of marine Roseobacters.
The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins.
Bacterial taxa that limit sulfur flux from the ocean.
Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi.
Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria.
The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate.
Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria.
Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase from Silicibacter pomeroyi.
Balancing Specificity and Promiscuity in Enzyme Evolution: Multidimensional Activity Transitions in the Alkaline Phosphatase Superfamily.
Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase.
Acta Crystallogr Sect F Struct Biol Cryst Commun
Acta Crystallogr. F Struct. Biol. Commun.
Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
HTHP: a novel class of hexameric, tyrosine-coordinated heme proteins.
Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.
Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere.
Biochemical, kinetic, and spectroscopic characterization of Ruegeria pomeroyi DddW-A mononuclear iron-dependent DMSP lyase.
DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3.
Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
Degradation of the microbial stress protectants and chemical chaperones ectoine and hydroxyectoine by a bacterial hydrolase-deacetylase complex.
Crystal structure of DmdD, a crotonase superfamily enzyme that catalyzes the hydration and hydrolysis of methylthioacryloyl-CoA.
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.
L-cysteate sulpho-lyase, a widespread pyridoxal 5'-phosphate-coupled desulphonative enzyme purified from Silicibacter pomeroyi DSS-3(T).
Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase.