309801:TRD RS09615
gene id: 309801:TRD_RS09615
uniprot id: B9L5E8
names: Function
messages: Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate.

309801:TRD RS03175
gene id: 309801:TRD_RS03175
uniprot id: B9KYY3
names: Function
names: Similarity
messages: Belongs to the helicase family. DnaB subfamily.
messages: Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity.

309801:TRD RS12420
gene id: 309801:TRD_RS12420
uniprot id: B9L4J9
names: Function
names: Miscellaneous
names: Similarity
names: Subunit
messages: A lyase-type mechanism (elimination/hydration) is suggested for the cleavage of the lactyl ether bond of MurNAc 6-phosphate, with the formation of an alpha,beta-unsaturated aldehyde intermediate with (E)-stereochemistry, followed by the syn addition of water to give product.
messages: Belongs to the GCKR-like family. MurNAc-6-P etherase subfamily.
messages: Homodimer.
messages: Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D-lactate.

309801:TRD RS02445
gene id: 309801:TRD_RS02445
uniprot id: B9KYI2
names: Similarity
messages: Belongs to the arginase family. Agmatinase subfamily.

309801:TRD RS08095
gene id: 309801:TRD_RS08095
uniprot id: B9L117
names: Similarity
messages: Belongs to the pyruvate kinase family.

309801:TRD RS01845
gene id: 309801:TRD_RS01845
uniprot id: B9KY57
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the thiamine-phosphate synthase family.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).

309801:TRD RS08600
gene id: 309801:TRD_RS08600
uniprot id: B9L1U1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS05025
gene id: 309801:TRD_RS05025
uniprot id: B9L0L4
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the OXA1/ALB3/YidC family.
messages: Membrane

309801:TRD RS00215
gene id: 309801:TRD_RS00215
uniprot id: B9L263
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07360
gene id: 309801:TRD_RS07360
uniprot id: B9L079
names: Similarity
messages: Belongs to the aldehyde dehydrogenase family.

309801:TRD RS05810
gene id: 309801:TRD_RS05810
uniprot id: B9L1I4
names: Similarity
messages: Belongs to the CDP-alcohol phosphatidyltransferase class-I family.

309801:TRD RS09025
gene id: 309801:TRD_RS09025
uniprot id: B9L232
names: Similarity
messages: Belongs to the disproportionating enzyme family.

309801:TRD RS01850
gene id: 309801:TRD_RS01850
uniprot id: B9KY58
names: Caution
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the thiamine-phosphate synthase family.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS10740
gene id: 309801:TRD_RS10740
uniprot id: B9L3H7
names: Similarity
messages: Belongs to the bacterial ring-hydroxylating dioxygenase alpha subunit family.

309801:TRD RS05930
gene id: 309801:TRD_RS05930
uniprot id: B9L1K8
names: Similarity
messages: Belongs to the band 7/mec-2 family.

309801:TRD RS01285
gene id: 309801:TRD_RS01285
uniprot id: B9KXT5
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS04885
gene id: 309801:TRD_RS04885
uniprot id: B9L0I8
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the IspG family.
messages: Binds 1 [4Fe-4S] cluster.
messages: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.

309801:TRD RS01185
gene id: 309801:TRD_RS01185
uniprot id: B9KXR1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03575
gene id: 309801:TRD_RS03575
uniprot id: B9KZ68
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the SecG family.
messages: Cell membrane
messages: Involved in protein export. Participates in an early event of protein translocation.
messages: Membrane

309801:TRD RS04390
gene id: 309801:TRD_RS04390
uniprot id: B9KZW0
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase alpha chain family.
messages: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
messages: Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
messages: The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.

309801:TRD RS12815
gene id: 309801:TRD_RS12815
uniprot id: B9L4U2
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS08045
gene id: 309801:TRD_RS08045
uniprot id: B9L107
names: Cofactor
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase M50B family.
messages: Binds 1 zinc ion per subunit.
messages: Cell membrane
messages: Membrane

309801:TRD RS06655
gene id: 309801:TRD_RS06655
uniprot id: B9L2L5
names: Similarity
messages: Belongs to the CapA family.

309801:TRD RS04385
gene id: 309801:TRD_RS04385
uniprot id: B9KZV9
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL17 family.
messages: Part of the 50S ribosomal subunit. Contacts protein L32.

309801:TRD RS00320
gene id: 309801:TRD_RS00320
uniprot id: B9L287
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the NrdR family.
messages: Binds 1 zinc ion.
messages: Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes.

309801:TRD RS03355
gene id: 309801:TRD_RS03355
uniprot id: B9KZ23
names: Function
names: Similarity
names: Subunit
messages: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.
messages: Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
messages: Homodimer.

309801:TRD RS01040
gene id: 309801:TRD_RS01040
uniprot id: B9KXM8
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the Maf family. YhdE subfamily.
messages: Cytoplasm
messages: Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.

309801:TRD RS05350
gene id: 309801:TRD_RS05350
uniprot id: B9L0S9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ABC-2 integral membrane protein family.
messages: Cell membrane
messages: Membrane

309801:TRD RS13535
gene id: 309801:TRD_RS13535
uniprot id: B9KZI6
names: Similarity
messages: Belongs to the CapA family.

309801:TRD RS02450
gene id: 309801:TRD_RS02450
uniprot id: B9KYI3
names: Similarity
messages: Belongs to the arginase family. Agmatinase subfamily.

309801:TRD RS13305
gene id: 309801:TRD_RS13305
uniprot id: B9L558
names: Similarity
messages: Belongs to the TmoD/XamoD family.

309801:TRD RS07930
gene id: 309801:TRD_RS07930
uniprot id: B9L0Y3
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.
messages: Binds 1 Mg(2+) or Mn(2+) ion per subunit.
messages: Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS05315
gene id: 309801:TRD_RS05315
uniprot id: B9L0S2
names: Caution
names: Function
names: Similarity
messages: Belongs to the glucose-6-phosphate dehydrogenase family.
messages: Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS04765
gene id: 309801:TRD_RS04765
uniprot id: B9L030
names: Domain
names: Function
names: Similarity
messages: Belongs to the RecA family. RadA subfamily.
messages: DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
messages: Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.
messages: The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease.

309801:TRD RS05035
gene id: 309801:TRD_RS05035
uniprot id: B9L0L6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RnpA family.
messages: Consists of a catalytic RNA component (M1 or rnpB) and a protein subunit.
messages: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.

309801:TRD RS10905
gene id: 309801:TRD_RS10905
uniprot id: B9L3L1
names: Subcellular Location Annotation
messages: Cell membrane
messages: Membrane

309801:TRD RS03645
gene id: 309801:TRD_RS03645
uniprot id: B9KZ82
names: Similarity
messages: Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.

309801:TRD RS04865
gene id: 309801:TRD_RS04865
uniprot id: B9L0I4
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-II aminoacyl-tRNA synthetase family.
messages: Catalyzes the attachment of glycine to tRNA(Gly).
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS09540
gene id: 309801:TRD_RS09540
uniprot id: B9L5D2
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the NrfD family.
messages: Membrane

309801:TRD RS05935
gene id: 309801:TRD_RS05935
uniprot id: B9L1K9
names: Similarity
messages: Belongs to the peptidase S49 family.

309801:TRD RS01715
gene id: 309801:TRD_RS01715
uniprot id: B9KY27
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS10755
gene id: 309801:TRD_RS10755
uniprot id: B9L3I0
names: Caution
names: Cofactor
names: Similarity
names: Subunit
messages: Belongs to the ferredoxin--NADP reductase type 2 family.
messages: Binds 1 FAD per subunit.
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS10695
gene id: 309801:TRD_RS10695
uniprot id: B9L3G8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03570
gene id: 309801:TRD_RS03570
uniprot id: B9KZ67
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the triosephosphate isomerase family.
messages: Cytoplasm
messages: Homodimer.
messages: Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).

309801:TRD RS01235
gene id: 309801:TRD_RS01235
uniprot id: B9KXS4
names: Cofactor
names: Function
messages: Binds 2 [4Fe-4S] clusters.
messages: Component of a complex that catalyzes the oxidation of glycolate to glyoxylate.

309801:TRD RS02860
gene id: 309801:TRD_RS02860
uniprot id: B9KYS1
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the ketol-acid reductoisomerase family.
messages: Binds 2 magnesium ions per subunit.
messages: Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.

309801:TRD RS03035
gene id: 309801:TRD_RS03035
uniprot id: B9KYV9
names: Caution
names: Cofactor
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the DnaJ family.
messages: Binds 2 Zn(2+) ions per monomer.
messages: Cytoplasm
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
messages: The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.

309801:TRD RS01555
gene id: 309801:TRD_RS01555
uniprot id: B9KXZ3
names: Function
names: Similarity
messages: 3'-5' exonuclease.
messages: Belongs to the helicase family. DinG subfamily. Type 2 sub-subfamily.

309801:TRD RS04360
gene id: 309801:TRD_RS04360
uniprot id: B9KZV4
names: Similarity
messages: Belongs to the peptidase S58 family.

309801:TRD RS04530
gene id: 309801:TRD_RS04530
uniprot id: B9KZY8
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS10 family.
messages: Involved in the binding of tRNA to the ribosomes.
messages: Part of the 30S ribosomal subunit.

309801:TRD RS02640
gene id: 309801:TRD_RS02640
uniprot id: B9KYM5
names: Similarity
messages: Belongs to the carbamate kinase family.

309801:TRD RS09945
gene id: 309801:TRD_RS09945
uniprot id: B9L2Y7
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
messages: Binds 1 zinc ion per subunit.
messages: Cytoplasm
messages: Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.
messages: One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit.

309801:TRD RS06305
gene id: 309801:TRD_RS06305
uniprot id: B9L2E0
names: Similarity
messages: Belongs to the isocitrate and isopropylmalate dehydrogenases family.

309801:TRD RS05730
gene id: 309801:TRD_RS05730
uniprot id: B9L1G8
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase epsilon chain family.
messages: Cell membrane
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.
messages: Produces ATP from ADP in the presence of a proton gradient across the membrane.

309801:TRD RS07560
gene id: 309801:TRD_RS07560
uniprot id: B9L0C4
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TatC family.
messages: Cell membrane
messages: Forms a complex with TatA.
messages: Membrane
messages: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes.

309801:TRD RS01685
gene id: 309801:TRD_RS01685
uniprot id: B9KY20
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS03030
gene id: 309801:TRD_RS03030
uniprot id: B9KYV8
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the adenylosuccinate synthetase family.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Cytoplasm
messages: Homodimer.
messages: Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.

309801:TRD RS13565
gene id: 309801:TRD_RS13565
uniprot id: B9L0N1
names: Similarity
messages: Belongs to the SCO1/2 family.

309801:TRD RS07965
gene id: 309801:TRD_RS07965
uniprot id: B9L0Z0
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the XseA family.
messages: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.
messages: Cytoplasm
messages: Heterooligomer composed of large and small subunits.

309801:TRD RS04535
gene id: 309801:TRD_RS04535
uniprot id: B9KYW9
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
messages: Cytoplasm
messages: Monomer.
messages: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.

309801:TRD RS04190
gene id: 309801:TRD_RS04190
uniprot id: B9KZJ0
names: Function
names: Similarity
messages: Belongs to the mannonate dehydratase family.
messages: Catalyzes the dehydration of D-mannonate.

309801:TRD RS05780
gene id: 309801:TRD_RS05780
uniprot id: B9L1H9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RecX family.
messages: Cytoplasm
messages: Modulates RecA activity.

309801:TRD RS00975
gene id: 309801:TRD_RS00975
uniprot id: B9KXL4
names: Function
names: Similarity
messages: Belongs to the thymidylate kinase family.
messages: Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.

309801:TRD RS06085
gene id: 309801:TRD_RS06085
uniprot id: B9L1N6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07240
gene id: 309801:TRD_RS07240
uniprot id: B9L055
names: Similarity
messages: Belongs to the histone deacetylase family.

309801:TRD RS08650
gene id: 309801:TRD_RS08650
uniprot id: B9L1V2
names: Similarity
messages: Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.

309801:TRD RS05890
gene id: 309801:TRD_RS05890
uniprot id: B9L1K0
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).
messages: Belongs to the AccD/PCCB family.
messages: Binds 1 zinc ion per subunit.
messages: Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.
messages: Cytoplasm

309801:TRD RS06545
gene id: 309801:TRD_RS06545
uniprot id: B9L2J1
names: Similarity
messages: Belongs to the acetaldehyde dehydrogenase family.

309801:TRD RS07665
gene id: 309801:TRD_RS07665
uniprot id: B9L0E5
names: Function
names: Similarity
messages: Belongs to the HrcA family.
messages: Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons.

309801:TRD RS04645
gene id: 309801:TRD_RS04645
uniprot id: B9L012
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS03860
gene id: 309801:TRD_RS03860
uniprot id: B9KZC7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS00905
gene id: 309801:TRD_RS00905
uniprot id: B9KXK1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RecA family.
messages: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.
messages: Cytoplasm

309801:TRD RS02735
gene id: 309801:TRD_RS02735
uniprot id: B9KYP8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS10285
gene id: 309801:TRD_RS10285
uniprot id: B9L374
names: Similarity
messages: Belongs to the universal stress protein A family.

309801:TRD RS01790
gene id: 309801:TRD_RS01790
uniprot id: B9KY43
names: Similarity
messages: Belongs to the UPF0173 family.

309801:TRD RS04725
gene id: 309801:TRD_RS04725
uniprot id: B9L023
names: Similarity
messages: Belongs to the FPP/GGPP synthase family.

309801:TRD RS08505
gene id: 309801:TRD_RS08505
uniprot id: B9L1S2
names: Similarity
messages: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family.

309801:TRD RS05880
gene id: 309801:TRD_RS05880
uniprot id: B9L1J8
names: Function
names: Similarity
messages: Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.
messages: Synthesizes alpha-1,4-glucan chains using ADP-glucose.

309801:TRD RS03855
gene id: 309801:TRD_RS03855
uniprot id: B9KZC6
names: Similarity
messages: Belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily.

309801:TRD RS04235
gene id: 309801:TRD_RS04235
uniprot id: B9KZS7
names: Function
names: Similarity
messages: Belongs to the LDH/MDH superfamily. MDH type 3 family.
messages: Catalyzes the reversible oxidation of malate to oxaloacetate.

309801:TRD RS10185
gene id: 309801:TRD_RS10185
uniprot id: B9L350
names: Similarity
messages: Belongs to the methyl-accepting chemotaxis (MCP) protein family.

309801:TRD RS08980
gene id: 309801:TRD_RS08980
uniprot id: B9L223
names: Similarity
messages: Belongs to the methylmalonyl-CoA epimerase family.

309801:TRD RS08780
gene id: 309801:TRD_RS08780
uniprot id: B9L1X8
names: Similarity
names: Subunit
messages: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family.
messages: Heterodimer of a large and a small subunit.

309801:TRD RS00430
gene id: 309801:TRD_RS00430
uniprot id: B9L2A8
names: Caution
names: Function
names: Similarity
messages: Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.

309801:TRD RS03810
gene id: 309801:TRD_RS03810
uniprot id: B9KZB7
names: Similarity
messages: Belongs to the bacterial histone-like protein family.

309801:TRD RS03125
gene id: 309801:TRD_RS03125
uniprot id: B9KYX4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL1 family.
messages: Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
messages: Part of the 50S ribosomal subunit.
messages: Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.

309801:TRD RS13510
gene id: 309801:TRD_RS13510
uniprot id: B9KYW8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS08235
gene id: 309801:TRD_RS08235
uniprot id: B9L148
names: Function
names: Similarity
names: Subunit
messages: Belongs to the DnaX/STICHEL family.
messages: DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex.
messages: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.

309801:TRD RS10840
gene id: 309801:TRD_RS10840
uniprot id: B9L3J8
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS06625
gene id: 309801:TRD_RS06625
uniprot id: B9L2K7
names: Function
names: Similarity
messages: Belongs to the ribonucleoside diphosphate reductase large chain family.
messages: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

309801:TRD RS12125
gene id: 309801:TRD_RS12125
uniprot id: B9L4D6
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum basal body
messages: Belongs to the FliG family.
messages: Membrane

309801:TRD RS03770
gene id: 309801:TRD_RS03770
uniprot id: B9KZA9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the endonuclease V family.
messages: Cytoplasm
messages: DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.

309801:TRD RS05705
gene id: 309801:TRD_RS05705
uniprot id: B9L1G3
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CcmF/CycK/Ccl1/NrfE/CcsA family.
messages: Cell inner membrane
messages: Membrane

309801:TRD RS08275
gene id: 309801:TRD_RS08275
uniprot id: B9L159
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the NDK family.
messages: Cytoplasm
messages: Homotetramer.
messages: Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.

309801:TRD RS08230
gene id: 309801:TRD_RS08230
uniprot id: B9L147
names: Similarity
messages: Belongs to the glycosyl hydrolase 1 family.

309801:TRD RS00830
gene id: 309801:TRD_RS00830
uniprot id: B9KXI5
names: Function
names: Miscellaneous
names: Similarity
messages: Belongs to the thiamine-monophosphate kinase family.
messages: Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.
messages: Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate.

309801:TRD RS08530
gene id: 309801:TRD_RS08530
uniprot id: B9L1S7
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PhoU family.
messages: Cytoplasm
messages: Homodimer.
messages: Plays a role in the regulation of phosphate uptake.

309801:TRD RS00370
gene id: 309801:TRD_RS00370
uniprot id: B9L297
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS08075
gene id: 309801:TRD_RS08075
uniprot id: B9L113
names: Function
names: Similarity
messages: Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
messages: Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).

309801:TRD RS04755
gene id: 309801:TRD_RS04755
uniprot id: B9L029
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase A8 family.
messages: Cell membrane
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: This protein specifically catalyzes the removal of signal peptides from prolipoproteins.

309801:TRD RS09340
gene id: 309801:TRD_RS09340
uniprot id: B9L590
names: Similarity
messages: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily.

309801:TRD RS05020
gene id: 309801:TRD_RS05020
uniprot id: B9L0L3
names: Caution
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: A probable RNA chaperone. Forms a complex with KhpA which binds to cellular RNA and controls its expression. Plays a role in peptidoglycan (PG) homeostasis and cell length regulation.
messages: Belongs to the KhpB RNA-binding protein family.
messages: Cytoplasm
messages: Forms a complex with KhpA.
messages: Has an N-terminal Jag-N domain and 2 RNA-binding domains (KH and R3H).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS11665
gene id: 309801:TRD_RS11665
uniprot id: B9L431
names: Similarity
messages: Belongs to the universal stress protein A family.

309801:TRD RS10585
gene id: 309801:TRD_RS10585
uniprot id: B9L3E4
names: Function
names: Similarity
messages: Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
messages: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA).

309801:TRD RS00105
gene id: 309801:TRD_RS00105
uniprot id: B9L1C1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the CRISPR-associated endonuclease Cas1 family.
messages: CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
messages: Homodimer, forms a heterotetramer with a Cas2 homodimer.

309801:TRD RS01445
gene id: 309801:TRD_RS01445
uniprot id: B9KXW6
names: Function
names: Similarity
messages: Belongs to the iron/manganese superoxide dismutase family.
messages: Destroys radicals which are normally produced within the cells and which are toxic to biological systems.

309801:TRD RS02270
gene id: 309801:TRD_RS02270
uniprot id: B9KYE7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12590
gene id: 309801:TRD_RS12590
uniprot id: B9L4P0
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS00505
gene id: 309801:TRD_RS00505
uniprot id: B9KXB9
names: Similarity
messages: Belongs to the TrpC family.

309801:TRD RS04315
gene id: 309801:TRD_RS04315
uniprot id: B9KZU5
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the Iojap/RsfS family.
messages: Cytoplasm
messages: Functions as a ribosomal silencing factor. Interacts with ribosomal protein uL14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
messages: Interacts with ribosomal protein uL14 (rplN).

309801:TRD RS01430
gene id: 309801:TRD_RS01430
uniprot id: B9KXW3
names: Similarity
messages: Belongs to the helicase family. UvrD subfamily.

309801:TRD RS03920
gene id: 309801:TRD_RS03920
uniprot id: B9KZE0
names: Similarity
messages: Belongs to the manganese catalase family.

309801:TRD RS03765
gene id: 309801:TRD_RS03765
uniprot id: B9KZA7
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS13745
gene id: 309801:TRD_RS13745
uniprot id: B9L1X1
names: Function
names: Similarity
messages: Belongs to the HypA/HybF family.
messages: Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.

309801:TRD RS01305
gene id: 309801:TRD_RS01305
uniprot id: B9KXT9
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS04785
gene id: 309801:TRD_RS04785
uniprot id: B9L034
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS08480
gene id: 309801:TRD_RS08480
uniprot id: B9L1R7
names: Function
names: Subcellular Location Annotation
messages: Cytoplasm
messages: Member of the two-component regulatory system NreB/NreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxygen, probably at the conserved histidine residue, and transfers its phosphate group probably to a conserved aspartate residue of NreC. NreB/NreC activates the expression of the nitrate (narGHJI) and nitrite (nir) reductase operons, as well as the putative nitrate transporter gene narT.

309801:TRD RS11905
gene id: 309801:TRD_RS11905
uniprot id: B9L488
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12655
gene id: 309801:TRD_RS12655
uniprot id: B9L4Q8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS00255
gene id: 309801:TRD_RS00255
uniprot id: B9L273
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the MraZ family.
messages: Forms oligomers.
messages: nucleoid

309801:TRD RS09695
gene id: 309801:TRD_RS09695
uniprot id: B9L5G5
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07470
gene id: 309801:TRD_RS07470
uniprot id: B9L0A5
names: Similarity
messages: Belongs to the intimin/invasin family.

309801:TRD RS09045
gene id: 309801:TRD_RS09045
uniprot id: B9L236
names: Function
names: Similarity
names: Subunit
messages: Belongs to the MurCDEF family. MurT subfamily.
messages: Forms a heterodimer with GatD.
messages: The lipid II isoglutaminyl synthase complex catalyzes the formation of alpha-D-isoglutamine in the cell wall lipid II stem peptide. The MurT subunit catalyzes the ATP-dependent amidation of D-glutamate residue of lipid II, converting it to an isoglutamine residue.

309801:TRD RS05845
gene id: 309801:TRD_RS05845
uniprot id: B9L1J1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the GHMP kinase family. Homoserine kinase subfamily.
messages: Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.
messages: Cytoplasm

309801:TRD RS09490
gene id: 309801:TRD_RS09490
uniprot id: B9L5C1
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum
messages: Belongs to the flagella basal body rod proteins family.
messages: Secreted

309801:TRD RS11325
gene id: 309801:TRD_RS11325
uniprot id: B9L3V5
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS07250
gene id: 309801:TRD_RS07250
uniprot id: B9L057
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the UvrB family.
messages: Cytoplasm
messages: Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.
messages: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.
messages: The beta-hairpin motif is involved in DNA binding.

309801:TRD RS08835
gene id: 309801:TRD_RS08835
uniprot id: B9L1Z0
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
messages: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Monomer.

309801:TRD RS00885
gene id: 309801:TRD_RS00885
uniprot id: B9KXJ6
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the HisA/HisF family.
messages: Cytoplasm
messages: Heterodimer of HisH and HisF.
messages: IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.

309801:TRD RS02105
gene id: 309801:TRD_RS02105
uniprot id: B9KYB3
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the transcriptional regulatory Rex family.
messages: Cytoplasm
messages: Homodimer.
messages: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.

309801:TRD RS05610
gene id: 309801:TRD_RS05610
uniprot id: B9L1E4
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the FKBP-type PPIase family. Tig subfamily.
messages: Consists of 3 domains; the N-terminus binds the ribosome, the middle domain has PPIase activity, while the C-terminus has intrinsic chaperone activity on its own.
messages: Cytoplasm
messages: Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase.

309801:TRD RS04880
gene id: 309801:TRD_RS04880
uniprot id: B9L0I7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase M50B family.
messages: Membrane

309801:TRD RS12020
gene id: 309801:TRD_RS12020
uniprot id: B9L4B2
names: Similarity
messages: Belongs to the archease family.

309801:TRD RS04270
gene id: 309801:TRD_RS04270
uniprot id: B9KZT5
names: Similarity
messages: Belongs to the FemABX family.

309801:TRD RS11880
gene id: 309801:TRD_RS11880
uniprot id: B9L484
names: Cofactor
messages: Binds 1 FAD per subunit.

309801:TRD RS08110
gene id: 309801:TRD_RS08110
uniprot id: B9L122
names: Function
names: Subunit
messages: Heterodimer of an alpha and a beta chain.
messages: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).

309801:TRD RS05565
gene id: 309801:TRD_RS05565
uniprot id: B9L1D5
names: Similarity
messages: Belongs to the RecJ family.

309801:TRD RS08735
gene id: 309801:TRD_RS08735
uniprot id: B9L1W9
names: Similarity
messages: Belongs to the HupF/HypC family.

309801:TRD RS08155
gene id: 309801:TRD_RS08155
uniprot id: B9L131
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.
messages: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).
messages: Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.
messages: Cytoplasm
messages: Homodimer. The tRNA molecule binds across the dimer.

309801:TRD RS08005
gene id: 309801:TRD_RS08005
uniprot id: B9L0Z8
names: Function
names: Similarity
messages: Belongs to the MoeA family.
messages: Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.

309801:TRD RS02975
gene id: 309801:TRD_RS02975
uniprot id: B9KYU7
names: Function
names: Similarity
messages: Belongs to the NadD family.
messages: Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).

309801:TRD RS10395
gene id: 309801:TRD_RS10395
uniprot id: B9L397
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the TPP enzyme family. MenD subfamily.
messages: Binds 1 thiamine pyrophosphate per subunit.
messages: Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC).
messages: Homodimer.

309801:TRD RS04640
gene id: 309801:TRD_RS04640
uniprot id: B9L011
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12905
gene id: 309801:TRD_RS12905
uniprot id: B9L4W2
names: Similarity
messages: Belongs to the enoyl-CoA hydratase/isomerase family.

309801:TRD RS03510
gene id: 309801:TRD_RS03510
uniprot id: B9KZ54
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS08180
gene id: 309801:TRD_RS08180
uniprot id: B9L136
names: Similarity
messages: Belongs to the NAD(P)-dependent epimerase/dehydratase family.

309801:TRD RS04830
gene id: 309801:TRD_RS04830
uniprot id: B9L043
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RNase HII family.
messages: Cytoplasm
messages: Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
messages: Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding.

309801:TRD RS08225
gene id: 309801:TRD_RS08225
uniprot id: B9L146
names: Function
names: Similarity
names: Subunit
messages: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).
messages: Belongs to the GatC family.
messages: Heterotrimer of A, B and C subunits.

309801:TRD RS08335
gene id: 309801:TRD_RS08335
uniprot id: B9L174
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the complex I subunit 6 family.
messages: Cell membrane
messages: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

309801:TRD RS12140
gene id: 309801:TRD_RS12140
uniprot id: B9L4D9
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Bacterial flagellum basal body
messages: Belongs to the flagella basal body rod proteins family.
messages: The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod. The rod consists of about 26 subunits of FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to build up the proximal portion of the rod with about 6 subunits each.

309801:TRD RS01190
gene id: 309801:TRD_RS01190
uniprot id: B9KXR2
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03450
gene id: 309801:TRD_RS03450
uniprot id: B9KZ44
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the SHMT family.
messages: Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS11910
gene id: 309801:TRD_RS11910
uniprot id: B9L489
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS13635
gene id: 309801:TRD_RS13635
uniprot id: B9L2D5
names: Similarity
messages: Belongs to the LytR/CpsA/Psr (LCP) family.

309801:TRD RS00435
gene id: 309801:TRD_RS00435
uniprot id: B9L2A9
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the prokaryotic/mitochondrial release factor family.
messages: Cytoplasm
messages: Methylated by PrmC. Methylation increases the termination efficiency of RF1.
messages: Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.

309801:TRD RS05470
gene id: 309801:TRD_RS05470
uniprot id: B9L0V3
names: Similarity
messages: Belongs to the selenium-binding protein family.

309801:TRD RS07310
gene id: 309801:TRD_RS07310
uniprot id: B9L069
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the peptidase S16 family.
messages: Cytoplasm
messages: Homohexamer. Organized in a ring with a central cavity.

309801:TRD RS02145
gene id: 309801:TRD_RS02145
uniprot id: B9KYC1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the NrfD family.
messages: Membrane

309801:TRD RS08355
gene id: 309801:TRD_RS08355
uniprot id: B9L178
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 2 family.
messages: Cell membrane
messages: NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.
messages: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

309801:TRD RS04620
gene id: 309801:TRD_RS04620
uniprot id: B9L006
names: Function
names: Similarity
messages: Belongs to the DXR family.
messages: Catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).

309801:TRD RS08070
gene id: 309801:TRD_RS08070
uniprot id: B9L112
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the IspF family.
messages: Binds 1 divalent metal cation per subunit.
messages: Homotrimer.
messages: Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS04650
gene id: 309801:TRD_RS04650
uniprot id: B9L013
names: Similarity
messages: Belongs to the GSP E family.

309801:TRD RS09015
gene id: 309801:TRD_RS09015
uniprot id: B9L230
names: Function
names: Similarity
names: Subunit
messages: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily.
messages: Homodimer.
messages: Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.

309801:TRD RS00960
gene id: 309801:TRD_RS00960
uniprot id: B9KXL1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the NAD kinase family.
messages: Cytoplasm
messages: Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.

309801:TRD RS07535
gene id: 309801:TRD_RS07535
uniprot id: B9L0B9
names: Similarity
messages: Belongs to the ACC deaminase/D-cysteine desulfhydrase family.

309801:TRD RS13710
gene id: 309801:TRD_RS13710
uniprot id: B9L0Z3
names: Similarity
messages: Belongs to the peptidase S8 family.

309801:TRD RS05755
gene id: 309801:TRD_RS05755
uniprot id: B9L1H3
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase B chain family.
messages: Cell membrane
messages: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).
messages: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
messages: F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.
messages: Membrane

309801:TRD RS04035
gene id: 309801:TRD_RS04035
uniprot id: B9KZF7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS05425
gene id: 309801:TRD_RS05425
uniprot id: B9L0U3
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the IspH family.
messages: Binds 1 [4Fe-4S] cluster per subunit.
messages: Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.

309801:TRD RS05725
gene id: 309801:TRD_RS05725
uniprot id: B9L1G7
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the EPSP synthase family. MurA subfamily.
messages: Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS05140
gene id: 309801:TRD_RS05140
uniprot id: B9L0N6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ammonia transporter channel (TC 1.A.11.2) family.
messages: Cell membrane
messages: Membrane

309801:TRD RS04835
gene id: 309801:TRD_RS04835
uniprot id: B9L044
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL19 family.
messages: This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

309801:TRD RS01975
gene id: 309801:TRD_RS01975
uniprot id: B9KY84
names: Similarity
messages: Belongs to the glycosyltransferase 28 family.

309801:TRD RS04350
gene id: 309801:TRD_RS04350
uniprot id: B9KZV2
names: Function
names: Similarity
messages: Belongs to the ribonucleoside diphosphate reductase class-2 family.
messages: Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.

309801:TRD RS09495
gene id: 309801:TRD_RS09495
uniprot id: B9L5C2
names: Similarity
messages: Belongs to the bacterial flagellin family.

309801:TRD RS02205
gene id: 309801:TRD_RS02205
uniprot id: B9KYD3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the ribose 5-phosphate isomerase family.
messages: Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
messages: Homodimer.

309801:TRD RS00380
gene id: 309801:TRD_RS00380
uniprot id: B9L299
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the TerC family.
messages: Membrane

309801:TRD RS09210
gene id: 309801:TRD_RS09210
uniprot id: B9L2T0
names: Cofactor
messages: Binds 4 [4Fe-4S] clusters per subunit.

309801:TRD RS02520
gene id: 309801:TRD_RS02520
uniprot id: B9KYJ8
names: Similarity
messages: Belongs to the LytR/CpsA/Psr (LCP) family.

309801:TRD RS05005
gene id: 309801:TRD_RS05005
uniprot id: B9L0L0
names: Function
names: Similarity
messages: Belongs to the GreA/GreB family.
messages: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.

309801:TRD RS10035
gene id: 309801:TRD_RS10035
uniprot id: B9L312
names: Similarity
messages: Belongs to the PrpD family.

309801:TRD RS09030
gene id: 309801:TRD_RS09030
uniprot id: B9L233
names: Function
names: Similarity
names: Subunit
messages: Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
messages: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.
messages: Monomer.

309801:TRD RS07095
gene id: 309801:TRD_RS07095
uniprot id: B9KZP8
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.
messages: Catalyzes the NADPH-dependent reduction of [LysW]-aminoadipate 6-phosphate to yield [LysW]-aminoadipate 6-semialdehyde.
messages: Cytoplasm

309801:TRD RS10815
gene id: 309801:TRD_RS10815
uniprot id: B9L3J2
names: Similarity
messages: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.

309801:TRD RS02285
gene id: 309801:TRD_RS02285
uniprot id: B9KYF0
names: Similarity
messages: Belongs to the malate synthase family.

309801:TRD RS11145
gene id: 309801:TRD_RS11145
uniprot id: B9L3R6
names: Similarity
messages: Belongs to the glutamine synthetase family.

309801:TRD RS03295
gene id: 309801:TRD_RS03295
uniprot id: B9KZ08
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the QueA family.
messages: Cytoplasm
messages: Monomer.
messages: Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).

309801:TRD RS06180
gene id: 309801:TRD_RS06180
uniprot id: B9L1Q4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS05860
gene id: 309801:TRD_RS05860
uniprot id: B9L1J4
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS02915
gene id: 309801:TRD_RS02915
uniprot id: B9KYT5
names: Similarity
messages: Belongs to the class-II aminoacyl-tRNA synthetase family.

309801:TRD RS01035
gene id: 309801:TRD_RS01035
uniprot id: B9KXM7
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
messages: Binds 2 Zn(2+) ions per subunit.
messages: Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.

309801:TRD RS00875
gene id: 309801:TRD_RS00875
uniprot id: B9KXJ4
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the HisA/HisF family.
messages: Cytoplasm

309801:TRD RS12715
gene id: 309801:TRD_RS12715
uniprot id: B9L4S0
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PanB family.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.
messages: Cytoplasm
messages: Homodecamer; pentamer of dimers.

309801:TRD RS00110
gene id: 309801:TRD_RS00110
uniprot id: B9L1C2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.
messages: CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
messages: Homodimer, forms a heterotetramer with a Cas1 homodimer.

309801:TRD RS07125
gene id: 309801:TRD_RS07125
uniprot id: B9KZQ4
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS07485
gene id: 309801:TRD_RS07485
uniprot id: B9L0A8
names: Similarity
messages: Belongs to the DprA/Smf family.

309801:TRD RS03275
gene id: 309801:TRD_RS03275
uniprot id: B9KZ04
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RecF family.
messages: Cytoplasm
messages: The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.

309801:TRD RS04330
gene id: 309801:TRD_RS04330
uniprot id: B9KZU8
names: Function
names: PTM
names: Similarity
messages: Belongs to the NAPRTase family.
messages: Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate.
messages: Transiently phosphorylated on a His residue during the reaction cycle. Phosphorylation strongly increases the affinity for substrates and increases the rate of nicotinate D-ribonucleotide production. Dephosphorylation regenerates the low-affinity form of the enzyme, leading to product release.

309801:TRD RS09205
gene id: 309801:TRD_RS09205
uniprot id: B9L2S9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the NrfD family.
messages: Membrane

309801:TRD RS09175
gene id: 309801:TRD_RS09175
uniprot id: B9L2S1
names: Similarity
messages: Belongs to the CDP-alcohol phosphatidyltransferase class-I family.

309801:TRD RS03060
gene id: 309801:TRD_RS03060
uniprot id: B9KYW4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
messages: Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity.
messages: Homodimer.

309801:TRD RS04710
gene id: 309801:TRD_RS04710
uniprot id: B9L020
names: Similarity
messages: Belongs to the small heat shock protein (HSP20) family.

309801:TRD RS00205
gene id: 309801:TRD_RS00205
uniprot id: B9L261
names: Cofactor
names: Similarity
messages: Belongs to the ETF alpha-subunit/FixB family.
messages: Binds 1 FAD per dimer.

309801:TRD RS01010
gene id: 309801:TRD_RS01010
uniprot id: B9KXM2
names: Function
names: Similarity
messages: Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
messages: DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.

309801:TRD RS12630
gene id: 309801:TRD_RS12630
uniprot id: B9L4Q3
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the BioY family.
messages: Cell membrane

309801:TRD RS12620
gene id: 309801:TRD_RS12620
uniprot id: B9L4Q1
names: Similarity
messages: Belongs to the ParB family.

309801:TRD RS03270
gene id: 309801:TRD_RS03270
uniprot id: B9KZ03
names: Similarity
messages: Belongs to the thiolase-like superfamily. Thiolase family.

309801:TRD RS03815
gene id: 309801:TRD_RS03815
uniprot id: B9KZB8
names: Cofactor
names: Function
names: Miscellaneous
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
messages: Belongs to the type II topoisomerase GyrB family.
messages: Binds two Mg(2+) per subunit. The magnesium ions form salt bridges with both the protein and the DNA. Can also accept other divalent metal cations, such as Mn(2+) or Ca(2+).
messages: Cytoplasm
messages: Few gyrases are as efficient as E.coli at forming negative supercoils. Not all organisms have 2 type II topoisomerases; in organisms with a single type II topoisomerase this enzyme also has to decatenate newly replicated chromosomes.
messages: Heterotetramer, composed of two GyrA and two GyrB chains. In the heterotetramer, GyrA contains the active site tyrosine that forms a transient covalent intermediate with DNA, while GyrB binds cofactors and catalyzes ATP hydrolysis.

309801:TRD RS03895
gene id: 309801:TRD_RS03895
uniprot id: B9KZD4
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bS20 family.
messages: Binds directly to 16S ribosomal RNA.

309801:TRD RS15250
gene id: 309801:TRD_RS15250
uniprot id: B9L344
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum
messages: Belongs to the bacterial flagellin family.
messages: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
messages: Secreted

309801:TRD RS09355
gene id: 309801:TRD_RS09355
uniprot id: B9L593
names: Similarity
messages: Belongs to the small heat shock protein (HSP20) family.

309801:TRD RS03025
gene id: 309801:TRD_RS03025
uniprot id: B9KYV7
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the thioester dehydratase family. FabZ subfamily.
messages: Cytoplasm
messages: Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.

309801:TRD RS05000
gene id: 309801:TRD_RS05000
uniprot id: B9L0K9
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS03210
gene id: 309801:TRD_RS03210
uniprot id: B9KYZ1
names: Function
names: Similarity
messages: Belongs to the DNA polymerase type-A family.
messages: In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.

309801:TRD RS00840
gene id: 309801:TRD_RS00840
uniprot id: B9KXI7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the TsaE family.
messages: Cytoplasm

309801:TRD RS04615
gene id: 309801:TRD_RS04615
uniprot id: B9L005
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CDS family.
messages: Membrane

309801:TRD RS04125
gene id: 309801:TRD_RS04125
uniprot id: B9KZH8
names: Similarity
messages: Belongs to the methylenetetrahydrofolate reductase family.

309801:TRD RS13285
gene id: 309801:TRD_RS13285
uniprot id: B9L553
names: Similarity
messages: Belongs to the DapA family.

309801:TRD RS10880
gene id: 309801:TRD_RS10880
uniprot id: B9L3K6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CPA3 antiporters (TC 2.A.63) subunit F family.
messages: Cell membrane
messages: Membrane

309801:TRD RS03235
gene id: 309801:TRD_RS03235
uniprot id: B9KYZ6
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the H(+)-translocating pyrophosphatase (TC 3.A.10) family. K(+)-insensitive subfamily.
messages: Cell membrane
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Membrane
messages: Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.

309801:TRD RS12840
gene id: 309801:TRD_RS12840
uniprot id: B9L4U8
names: Similarity
messages: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS02535
gene id: 309801:TRD_RS02535
uniprot id: B9KYK2
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ABC-2 integral membrane protein family.
messages: Cell membrane
messages: Membrane

309801:TRD RS11110
gene id: 309801:TRD_RS11110
uniprot id: B9L3Q7
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ThiI family.
messages: Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
messages: Cytoplasm

309801:TRD RS02940
gene id: 309801:TRD_RS02940
uniprot id: B9KYU0
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the IlvD/Edd family.
messages: Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.
messages: Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS05975
gene id: 309801:TRD_RS05975
uniprot id: B9L1L7
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Specifically methylates the N7 position of a guanine in 16S rRNA.

309801:TRD RS08220
gene id: 309801:TRD_RS08220
uniprot id: B9L145
names: Function
names: Similarity
names: Subunit
messages: Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
messages: Belongs to the amidase family. GatA subfamily.
messages: Heterotrimer of A, B and C subunits.

309801:TRD RS03550
gene id: 309801:TRD_RS03550
uniprot id: B9KZ62
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the NusA family.
messages: Cytoplasm
messages: Monomer. Binds directly to the core enzyme of the DNA-dependent RNA polymerase and to nascent RNA.
messages: Participates in both transcription termination and antitermination.

309801:TRD RS09040
gene id: 309801:TRD_RS09040
uniprot id: B9L235
names: Function
names: Similarity
names: Subunit
messages: Belongs to the CobB/CobQ family. GatD subfamily.
messages: Forms a heterodimer with MurT.
messages: The lipid II isoglutaminyl synthase complex catalyzes the formation of alpha-D-isoglutamine in the cell wall lipid II stem peptide. The GatD subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia. The resulting ammonia molecule is channeled to the active site of MurT.

309801:TRD RS00125
gene id: 309801:TRD_RS00125
uniprot id: B9L1C5
names: Function
names: Similarity
names: Subunit
messages: Belongs to the PdxS/SNZ family.
messages: Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively.
messages: In the presence of PdxT, forms a dodecamer of heterodimers.

309801:TRD RS09075
gene id: 309801:TRD_RS09075
uniprot id: B9L242
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS01590
gene id: 309801:TRD_RS01590
uniprot id: B9KY01
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the methyltransferase superfamily. PrmA family.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Methylates ribosomal protein L11.

309801:TRD RS11000
gene id: 309801:TRD_RS11000
uniprot id: B9L3N3
names: Similarity
messages: Belongs to the PHP hydrolase family. HisK subfamily.

309801:TRD RS09515
gene id: 309801:TRD_RS09515
uniprot id: B9L5C7
names: Similarity
messages: Belongs to the Nudix hydrolase family.

309801:TRD RS02005
gene id: 309801:TRD_RS02005
uniprot id: B9KY90
names: Similarity
names: Subunit
messages: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
messages: Homodimer.

309801:TRD RS05485
gene id: 309801:TRD_RS05485
uniprot id: B9L0V6
names: Similarity
messages: Belongs to the GTP cyclohydrolase I type 2/NIF3 family.

309801:TRD RS03850
gene id: 309801:TRD_RS03850
uniprot id: B9KZC5
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS03000
gene id: 309801:TRD_RS03000
uniprot id: B9KYV1
names: Similarity
messages: Belongs to the myo-inositol 1-phosphate synthase family.

309801:TRD RS10040
gene id: 309801:TRD_RS10040
uniprot id: B9L313
names: Function
names: Similarity
messages: Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
messages: Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.

309801:TRD RS03490
gene id: 309801:TRD_RS03490
uniprot id: B9KZ52
names: Similarity
messages: Belongs to the PspA/IM30 family.

309801:TRD RS11070
gene id: 309801:TRD_RS11070
uniprot id: B9L3Q0
names: Similarity
messages: Belongs to the aspartokinase family.

309801:TRD RS09430
gene id: 309801:TRD_RS09430
uniprot id: B9L5A8
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum basal body
messages: Belongs to the FliQ/MopD/SpaQ family.
messages: Cell membrane
messages: Membrane
messages: Role in flagellar biosynthesis.

309801:TRD RS04345
gene id: 309801:TRD_RS04345
uniprot id: B9KZV1
names: Similarity
messages: Belongs to the small heat shock protein (HSP20) family.

309801:TRD RS08445
gene id: 309801:TRD_RS08445
uniprot id: B9L198
names: Similarity
messages: Belongs to the universal stress protein A family.

309801:TRD RS05665
gene id: 309801:TRD_RS05665
uniprot id: B9L1F5
names: Similarity
messages: Belongs to the Nudix hydrolase family.

309801:TRD RS04750
gene id: 309801:TRD_RS04750
uniprot id: B9L028
names: Function
names: Similarity
messages: Belongs to the pseudouridine synthase RluA family.
messages: Responsible for synthesis of pseudouridine from uracil.

309801:TRD RS08025
gene id: 309801:TRD_RS08025
uniprot id: B9L103
names: Function
names: Similarity
names: Subunit
messages: Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.
messages: Homodimer.
messages: Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.

309801:TRD RS00660
gene id: 309801:TRD_RS00660
uniprot id: B9KXF0
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS04400
gene id: 309801:TRD_RS04400
uniprot id: B9KZW2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS11 family.
messages: Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
messages: Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.

309801:TRD RS13465
gene id: 309801:TRD_RS13465
uniprot id: B9KY91
names: Similarity
messages: Belongs to the peptidase S11 family.

309801:TRD RS04425
gene id: 309801:TRD_RS04425
uniprot id: B9KZW7
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the adenylate kinase family.
messages: Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.
messages: Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis. Some bacteria have evolved a zinc-coordinating structure that stabilizes the LID domain.
messages: Cytoplasm
messages: Monomer.

309801:TRD RS12745
gene id: 309801:TRD_RS12745
uniprot id: B9L4S7
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS06230
gene id: 309801:TRD_RS06230
uniprot id: B9L2C4
names: Function
names: Similarity
messages: Belongs to the DHNA family.
messages: Catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin.

309801:TRD RS04030
gene id: 309801:TRD_RS04030
uniprot id: B9KZF6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS13080
gene id: 309801:TRD_RS13080
uniprot id: B9L505
names: Function
names: Similarity
names: Subunit
messages: Belongs to the IPP transferase family.
messages: Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
messages: Monomer.

309801:TRD RS00160
gene id: 309801:TRD_RS00160
uniprot id: B9L250
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
messages: Binds 2 Mg(2+) ions per subunit.
messages: Cytoplasm
messages: Homohexamer.
messages: Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS08810
gene id: 309801:TRD_RS08810
uniprot id: B9L1Y4
names: Similarity
messages: Belongs to the threonine aldolase family.

309801:TRD RS09265
gene id: 309801:TRD_RS09265
uniprot id: B9L2T9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MscS (TC 1.A.23) family.
messages: Membrane

309801:TRD RS03905
gene id: 309801:TRD_RS03905
uniprot id: B9KZD7
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.
messages: Cell membrane
messages: Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner.

309801:TRD RS04200
gene id: 309801:TRD_RS04200
uniprot id: B9KZS0
names: Function
names: Similarity
messages: Belongs to the Fe(2+)-trafficking protein family.
messages: Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.

309801:TRD RS09410
gene id: 309801:TRD_RS09410
uniprot id: B9L5A4
names: Similarity
messages: Belongs to the MotB family.

309801:TRD RS11545
gene id: 309801:TRD_RS11545
uniprot id: B9L405
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07495
gene id: 309801:TRD_RS07495
uniprot id: B9L0B0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the type IA topoisomerase family.
messages: Monomer.
messages: Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.

309801:TRD RS08400
gene id: 309801:TRD_RS08400
uniprot id: B9L187
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the QueC family.
messages: Binds 1 zinc ion per subunit.
messages: Catalyzes the ATP-dependent conversion of 7-carboxy-7-deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).

309801:TRD RS00375
gene id: 309801:TRD_RS00375
uniprot id: B9L298
names: Similarity
messages: Belongs to the universal stress protein A family.

309801:TRD RS04075
gene id: 309801:TRD_RS04075
uniprot id: B9KZG6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS11820
gene id: 309801:TRD_RS11820
uniprot id: B9L467
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PlsY family.
messages: Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
messages: Cell membrane
messages: Probably interacts with PlsX.

309801:TRD RS01055
gene id: 309801:TRD_RS01055
uniprot id: B9KXN1
names: Caution
names: Function
names: Similarity
names: Subunit
messages: Belongs to the spermidine/spermine synthase family.
messages: Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
messages: Homodimer or homotetramer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS12685
gene id: 309801:TRD_RS12685
uniprot id: B9L4R4
names: Function
names: Subunit
messages: Acetyl-CoA carboxylase is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and the two subunits of carboxyl transferase in a 2:2 complex.
messages: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

309801:TRD RS00185
gene id: 309801:TRD_RS00185
uniprot id: B9L257
names: Similarity
messages: Belongs to the acyl-CoA dehydrogenase family.

309801:TRD RS02775
gene id: 309801:TRD_RS02775
uniprot id: B9KYQ7
names: Similarity
messages: Belongs to the HypE family.

309801:TRD RS09280
gene id: 309801:TRD_RS09280
uniprot id: B9L576
names: Similarity
messages: Belongs to the aldehyde dehydrogenase family.

309801:TRD RS05030
gene id: 309801:TRD_RS05030
uniprot id: B9L0L5
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the UPF0161 family.
messages: Cell membrane
messages: Could be involved in insertion of integral membrane proteins into the membrane.

309801:TRD RS08990
gene id: 309801:TRD_RS08990
uniprot id: B9L225
names: Function
names: Similarity
messages: ATPase required for the correct placement of the division site. Cell division inhibitors MinC and MinD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings.
messages: Belongs to the ParA family. MinD subfamily.

309801:TRD RS09440
gene id: 309801:TRD_RS09440
uniprot id: B9L5B0
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the type III secretion exporter family.
messages: Cell membrane
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Membrane
messages: Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin.

309801:TRD RS04490
gene id: 309801:TRD_RS04490
uniprot id: B9KZY0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL16 family.
messages: Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.
messages: Part of the 50S ribosomal subunit.

309801:TRD RS03430
gene id: 309801:TRD_RS03430
uniprot id: B9KZ40
names: Function
names: Similarity
names: Subunit
messages: Belongs to the GcvT family.
messages: The glycine cleavage system catalyzes the degradation of glycine.
messages: The glycine cleavage system is composed of four proteins: P, T, L and H.

309801:TRD RS03535
gene id: 309801:TRD_RS03535
uniprot id: B9KZ59
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RbfA family.
messages: Cytoplasm
messages: Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.
messages: One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.

309801:TRD RS08350
gene id: 309801:TRD_RS08350
uniprot id: B9L177
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the complex I subunit 4 family.
messages: Membrane

309801:TRD RS01125
gene id: 309801:TRD_RS01125
uniprot id: B9KXP7
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the chorismate synthase family.
messages: Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
messages: Homotetramer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Reduced FMN (FMNH(2)).

309801:TRD RS09505
gene id: 309801:TRD_RS09505
uniprot id: B9L5C4
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
messages: Belongs to the CsrA/RsmA family.
messages: Cytoplasm
messages: Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core.

309801:TRD RS01425
gene id: 309801:TRD_RS01425
uniprot id: B9KXW1
names: Similarity
messages: Belongs to the 3-oxoacid CoA-transferase subunit A family.

309801:TRD RS06740
gene id: 309801:TRD_RS06740
uniprot id: B9L2N2
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.
messages: Cytoplasm
messages: Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.

309801:TRD RS00500
gene id: 309801:TRD_RS00500
uniprot id: B9KXB8
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the anthranilate phosphoribosyltransferase family.
messages: Binds 2 magnesium ions per monomer.
messages: Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).
messages: Homodimer.

309801:TRD RS01890
gene id: 309801:TRD_RS01890
uniprot id: B9KY66
names: Similarity
messages: Belongs to the SCO1/2 family.

309801:TRD RS14995
gene id: 309801:TRD_RS14995
uniprot id: B9L5A2
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum basal body
messages: Belongs to the FliM family.
messages: Belongs to the FliN/MopA/SpaO family.
messages: Membrane

309801:TRD RS04435
gene id: 309801:TRD_RS04435
uniprot id: B9KZW9
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL15 family.
messages: Binds to the 23S rRNA.
messages: Part of the 50S ribosomal subunit.

309801:TRD RS08420
gene id: 309801:TRD_RS08420
uniprot id: B9L192
names: Caution
names: Function
names: Similarity
names: Subunit
messages: Belongs to the succinate/malate CoA ligase alpha subunit family.
messages: Heterotetramer of two alpha and two beta subunits.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.

309801:TRD RS04110
gene id: 309801:TRD_RS04110
uniprot id: B9KZH4
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS00510
gene id: 309801:TRD_RS00510
uniprot id: B9KXC0
names: Similarity
messages: Belongs to the TrpF family.

309801:TRD RS06325
gene id: 309801:TRD_RS06325
uniprot id: B9L2E4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS02260
gene id: 309801:TRD_RS02260
uniprot id: B9KYE5
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS10420
gene id: 309801:TRD_RS10420
uniprot id: B9L3A3
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03110
gene id: 309801:TRD_RS03110
uniprot id: B9KYX1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the SecE/SEC61-gamma family.
messages: Cell membrane
messages: Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.
messages: Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.

309801:TRD RS10955
gene id: 309801:TRD_RS10955
uniprot id: B9L3M2
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS00045
gene id: 309801:TRD_RS00045
uniprot id: B9L1A9
names: Similarity
messages: Belongs to the OMP decarboxylase family. Type 2 subfamily.

309801:TRD RS08985
gene id: 309801:TRD_RS08985
uniprot id: B9L224
names: Function
names: Similarity
messages: Belongs to the MinE family.
messages: Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.

309801:TRD RS13925
gene id: 309801:TRD_RS13925
uniprot id: B9L3X4
names: Similarity
messages: Belongs to the sigma-70 factor family. ECF subfamily.

309801:TRD RS07080
gene id: 309801:TRD_RS07080
uniprot id: B9KZP5
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS12000
gene id: 309801:TRD_RS12000
uniprot id: B9L4A8
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
messages: Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor.
messages: Cell membrane

309801:TRD RS04985
gene id: 309801:TRD_RS04985
uniprot id: B9L0K7
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MnmA/TRMU family.
messages: Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS01045
gene id: 309801:TRD_RS01045
uniprot id: B9KXM9
names: Similarity
messages: Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.

309801:TRD RS13085
gene id: 309801:TRD_RS13085
uniprot id: B9L506
names: Function
names: Similarity
messages: Belongs to the transglycosylase MltG family.
messages: Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.

309801:TRD RS03265
gene id: 309801:TRD_RS03265
uniprot id: B9KZ02
names: Caution
names: Function
names: PTM
names: Similarity
messages: Acetylated. Deacetylation by the SIR2-homolog deacetylase activates the enzyme.
messages: Belongs to the ATP-dependent AMP-binding enzyme family.
messages: Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS07780
gene id: 309801:TRD_RS07780
uniprot id: B9L0G7
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the IspH family.
messages: Binds 1 [4Fe-4S] cluster per subunit.
messages: Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis.

309801:TRD RS06460
gene id: 309801:TRD_RS06460
uniprot id: B9L2H4
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ribonuclease III family.
messages: Cytoplasm
messages: Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS07025
gene id: 309801:TRD_RS07025
uniprot id: B9KZN4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS10615
gene id: 309801:TRD_RS10615
uniprot id: B9L3F1
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS06480
gene id: 309801:TRD_RS06480
uniprot id: B9L2H8
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TatA/E family.
messages: Cell membrane
messages: Forms a complex with TatC.
messages: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

309801:TRD RS05150
gene id: 309801:TRD_RS05150
uniprot id: B9L0N8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS03605
gene id: 309801:TRD_RS03605
uniprot id: B9KZ75
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase S26 family.
messages: Membrane

309801:TRD RS03900
gene id: 309801:TRD_RS03900
uniprot id: B9KZD6
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MurJ/MviN family.
messages: Cell membrane
messages: Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
messages: Membrane

309801:TRD RS08730
gene id: 309801:TRD_RS08730
uniprot id: B9L1W8
names: Similarity
messages: Belongs to the HupF/HypC family.

309801:TRD RS08015
gene id: 309801:TRD_RS08015
uniprot id: B9L101
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control.
messages: Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
messages: Cytoplasm
messages: Monomer.

309801:TRD RS05900
gene id: 309801:TRD_RS05900
uniprot id: B9L1K2
names: Similarity
messages: Belongs to the small heat shock protein (HSP20) family.

309801:TRD RS05835
gene id: 309801:TRD_RS05835
uniprot id: B9L1I9
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bS6 family.
messages: Binds together with bS18 to 16S ribosomal RNA.

309801:TRD RS03915
gene id: 309801:TRD_RS03915
uniprot id: B9KZD9
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).
messages: Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS04455
gene id: 309801:TRD_RS04455
uniprot id: B9KZX3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL6 family.
messages: Part of the 50S ribosomal subunit.
messages: This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.

309801:TRD RS05280
gene id: 309801:TRD_RS05280
uniprot id: B9L0R5
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS00715
gene id: 309801:TRD_RS00715
uniprot id: B9KXG1
names: Cofactor
names: Similarity
messages: Belongs to the ETF alpha-subunit/FixB family.
messages: Binds 1 FAD per dimer.

309801:TRD RS06600
gene id: 309801:TRD_RS06600
uniprot id: B9L2K2
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS04910
gene id: 309801:TRD_RS04910
uniprot id: B9L0J3
names: Cofactor
names: Similarity
messages: Belongs to the peptidase M42 family.
messages: Binds 2 divalent metal cations per subunit.

309801:TRD RS12325
gene id: 309801:TRD_RS12325
uniprot id: B9L4H7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS04275
gene id: 309801:TRD_RS04275
uniprot id: B9KZT6
names: Caution
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MurCDEF family. MurE subfamily.
messages: Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.
messages: Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS02375
gene id: 309801:TRD_RS02375
uniprot id: B9KYG8
names: Similarity
messages: Belongs to the UPF0047 family.

309801:TRD RS07865
gene id: 309801:TRD_RS07865
uniprot id: B9L0W9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
messages: Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
messages: Cytoplasm

309801:TRD RS08145
gene id: 309801:TRD_RS08145
uniprot id: B9L129
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ABC transporter superfamily. UvrA family.
messages: Cytoplasm
messages: Forms a heterotetramer with UvrB during the search for lesions.
messages: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.

309801:TRD RS05905
gene id: 309801:TRD_RS05905
uniprot id: B9L1K3
names: Cofactor
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase M50B family.
messages: Binds 1 zinc ion per subunit.
messages: Cell membrane
messages: Membrane

309801:TRD RS05970
gene id: 309801:TRD_RS05970
uniprot id: B9L1L6
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the transketolase family. DXPS subfamily.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Binds 1 thiamine pyrophosphate per subunit.
messages: Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).
messages: Homodimer.

309801:TRD RS06620
gene id: 309801:TRD_RS06620
uniprot id: B9L2K6
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the ribonucleoside diphosphate reductase small chain family.
messages: Binds 2 iron ions per subunit.
messages: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.

309801:TRD RS07065
gene id: 309801:TRD_RS07065
uniprot id: B9KZP2
names: Caution
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
messages: Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Monomer.
messages: The C-terminal coiled-coil domain is crucial for aminoacylation activity.
messages: ValRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated threonine is translocated from the active site to the editing site.

309801:TRD RS04380
gene id: 309801:TRD_RS04380
uniprot id: B9KZV8
names: Caution
names: Function
names: Similarity
names: Subunit
messages: Belongs to the tRNA pseudouridine synthase TruA family.
messages: Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS02780
gene id: 309801:TRD_RS02780
uniprot id: B9KYQ8
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.
messages: Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
messages: Cytoplasm
messages: Homodimer or homotetramer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS12200
gene id: 309801:TRD_RS12200
uniprot id: B9L4F1
names: Similarity
messages: Belongs to the glutamine synthetase family.

309801:TRD RS10735
gene id: 309801:TRD_RS10735
uniprot id: B9L3H6
names: Similarity
messages: Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family.

309801:TRD RS10765
gene id: 309801:TRD_RS10765
uniprot id: B9L3I2
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09660
gene id: 309801:TRD_RS09660
uniprot id: B9L5F7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS01665
gene id: 309801:TRD_RS01665
uniprot id: B9KY16
names: Caution
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MobA family.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: The N-terminal domain determines nucleotide recognition and specific binding, while the C-terminal domain determines the specific binding to the target protein.
messages: Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.

309801:TRD RS04550
gene id: 309801:TRD_RS04550
uniprot id: B9KZZ2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS12 family.
messages: Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.
messages: With S4 and S5 plays an important role in translational accuracy.

309801:TRD RS12980
gene id: 309801:TRD_RS12980
uniprot id: B9L4X9
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS06270
gene id: 309801:TRD_RS06270
uniprot id: B9L2D3
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.
messages: Cell membrane
messages: Membrane

309801:TRD RS05300
gene id: 309801:TRD_RS05300
uniprot id: B9L0R9
names: Similarity
messages: Belongs to the F420H(2)-dependent quinone reductase family.

309801:TRD RS06710
gene id: 309801:TRD_RS06710
uniprot id: B9L2M7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
messages: Cytoplasm

309801:TRD RS02920
gene id: 309801:TRD_RS02920
uniprot id: B9KYT6
names: Cofactor
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
messages: Binds 2 magnesium ions per tetramer.
messages: Cytoplasm
messages: Tetramer of two alpha and two beta subunits.

309801:TRD RS04395
gene id: 309801:TRD_RS04395
uniprot id: B9KZW1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS4 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.
messages: With S5 and S12 plays an important role in translational accuracy.

309801:TRD RS00400
gene id: 309801:TRD_RS00400
uniprot id: B9L2A2
names: Function
names: Similarity
messages: Belongs to the helicase family. RecG subfamily.
messages: Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA).

309801:TRD RS02370
gene id: 309801:TRD_RS02370
uniprot id: B9KYG7
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase M17 family.
messages: Binds 2 manganese ions per subunit.
messages: Cytoplasm
messages: Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.

309801:TRD RS07835
gene id: 309801:TRD_RS07835
uniprot id: B9L0H8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS07960
gene id: 309801:TRD_RS07960
uniprot id: B9L0Y9
names: Function
messages: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

309801:TRD RS01270
gene id: 309801:TRD_RS01270
uniprot id: B9KXT1
names: Cofactor
names: Similarity
messages: Belongs to the peptidase M42 family.
messages: Binds 2 divalent metal cations per subunit.

309801:TRD RS11550
gene id: 309801:TRD_RS11550
uniprot id: B9L406
names: Similarity
messages: Belongs to the oxygen-dependent FAD-linked oxidoreductase family.

309801:TRD RS04500
gene id: 309801:TRD_RS04500
uniprot id: B9KZY2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL22 family.
messages: Part of the 50S ribosomal subunit.
messages: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
messages: This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).

309801:TRD RS04510
gene id: 309801:TRD_RS04510
uniprot id: B9KZY4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL2 family.
messages: One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.
messages: Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.

309801:TRD RS11510
gene id: 309801:TRD_RS11510
uniprot id: B9L3Z7
names: Similarity
messages: Belongs to the carbon-nitrogen hydrolase superfamily. NIT1/NIT2 family.

309801:TRD RS01435
gene id: 309801:TRD_RS01435
uniprot id: B9KXW4
names: Similarity
messages: Belongs to the PEP-utilizing enzyme family.

309801:TRD RS07950
gene id: 309801:TRD_RS07950
uniprot id: B9L0Y7
names: Similarity
messages: Belongs to the peptidase M24B family.

309801:TRD RS08340
gene id: 309801:TRD_RS08340
uniprot id: B9L175
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 4L family.
messages: Cell membrane
messages: NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.
messages: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

309801:TRD RS01815
gene id: 309801:TRD_RS01815
uniprot id: B9KY49
names: Similarity
messages: Belongs to the trans-sulfuration enzymes family.

309801:TRD RS03240
gene id: 309801:TRD_RS03240
uniprot id: B9KYZ7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS13575
gene id: 309801:TRD_RS13575
uniprot id: B9L0Q4
names: Cofactor
names: Function
names: Miscellaneous
names: Similarity
names: Subunit
messages: Belongs to the HMBS family.
messages: Binds 1 dipyrromethane group covalently.
messages: Monomer.
messages: Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
messages: The porphobilinogen subunits are added to the dipyrromethane group.

309801:TRD RS07035
gene id: 309801:TRD_RS07035
uniprot id: B9KZN6
names: Similarity
messages: Belongs to the peptidase M16 family.

309801:TRD RS03525
gene id: 309801:TRD_RS03525
uniprot id: B9KZ57
names: Function
names: Similarity
messages: Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
messages: Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.

309801:TRD RS09385
gene id: 309801:TRD_RS09385
uniprot id: B9L599
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS00940
gene id: 309801:TRD_RS00940
uniprot id: B9KXK7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the iron-containing alcohol dehydrogenase family. Hydroxyacid-oxoacid transhydrogenase subfamily.
messages: Mitochondrion

309801:TRD RS07565
gene id: 309801:TRD_RS07565
uniprot id: B9L0C5
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.
messages: 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.
messages: Belongs to the acyl carrier protein (ACP) family.
messages: Carrier of the growing fatty acid chain in fatty acid biosynthesis.
messages: Cytoplasm

309801:TRD RS09380
gene id: 309801:TRD_RS09380
uniprot id: B9L598
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS05130
gene id: 309801:TRD_RS05130
uniprot id: B9L0N4
names: Similarity
messages: Belongs to the glutamate synthase family.

309801:TRD RS02460
gene id: 309801:TRD_RS02460
uniprot id: B9KYI5
names: Cofactor
names: PTM
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
messages: Binds 2 nickel ions per subunit.
messages: Carbamylation allows a single lysine to coordinate two nickel ions.
messages: Carboxylation allows a single lysine to coordinate two nickel ions.
messages: Cytoplasm
messages: Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.

309801:TRD RS12720
gene id: 309801:TRD_RS12720
uniprot id: B9L4S1
names: Function
names: Miscellaneous
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the pantothenate synthetase family.
messages: Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.
messages: Cytoplasm
messages: Homodimer.
messages: The reaction proceeds by a bi uni uni bi ping pong mechanism.

309801:TRD RS15100
gene id: 309801:TRD_RS15100
uniprot id: B9L085
names: Function
names: Similarity
messages: Belongs to the RmuC family.
messages: Involved in DNA recombination.

309801:TRD RS08860
gene id: 309801:TRD_RS08860
uniprot id: B9L1Z5
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the FPG family.
messages: Binds 1 zinc ion per subunit.
messages: Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
messages: Monomer.

309801:TRD RS00065
gene id: 309801:TRD_RS00065
uniprot id: B9L1B3
names: Caution
names: Function
names: Similarity
messages: Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
messages: Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS03445
gene id: 309801:TRD_RS03445
uniprot id: B9KZ43
names: Function
names: Similarity
names: Subunit
messages: Associates with the 50S ribosomal subunit.
messages: Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
messages: GTPase that plays an essential role in the late steps of ribosome biogenesis.

309801:TRD RS03425
gene id: 309801:TRD_RS03425
uniprot id: B9KZ39
names: Cofactor
names: Function
names: Similarity
messages: Binds 1 Mg(2+) ion per subunit.
messages: Binds 1 [4Fe-4S] cluster per subunit.
messages: Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
messages: In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.

309801:TRD RS09035
gene id: 309801:TRD_RS09035
uniprot id: B9L234
names: Similarity
messages: Belongs to the glycosyl hydrolase 57 family.

309801:TRD RS01565
gene id: 309801:TRD_RS01565
uniprot id: B9KXZ5
names: Caution
names: Function
names: Similarity
names: Subunit
messages: Belongs to the Rho family.
messages: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template.
messages: Homohexamer. The homohexamer assembles into an open ring structure.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS00865
gene id: 309801:TRD_RS00865
uniprot id: B9KXJ2
names: Similarity
messages: Belongs to the histone deacetylase family.

309801:TRD RS11215
gene id: 309801:TRD_RS11215
uniprot id: B9L3T3
names: Function
names: Similarity
messages: Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
messages: Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition.

309801:TRD RS05800
gene id: 309801:TRD_RS05800
uniprot id: B9L1I3
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the methylthiotransferase family. RimO subfamily.
messages: Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.
messages: Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein uS12.
messages: Cytoplasm

309801:TRD RS06560
gene id: 309801:TRD_RS06560
uniprot id: B9L2J4
names: Similarity
messages: Belongs to the extradiol ring-cleavage dioxygenase family.

309801:TRD RS01945
gene id: 309801:TRD_RS01945
uniprot id: B9KY77
names: Cofactor
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the DnaG primase family.
messages: Binds 1 zinc ion per monomer.
messages: Contains an N-terminal zinc-binding domain, a central core domain that contains the primase activity, and a C-terminal DnaB-binding domain.
messages: Monomer. Interacts with DnaB.
messages: RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.

309801:TRD RS06685
gene id: 309801:TRD_RS06685
uniprot id: B9L2M2
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
messages: Binds 1 zinc ion per subunit.
messages: Binds the 23S rRNA.
messages: Part of the 50S ribosomal subunit.

309801:TRD RS09485
gene id: 309801:TRD_RS09485
uniprot id: B9L5B9
names: Similarity
messages: Belongs to the FlgM family.

309801:TRD RS03875
gene id: 309801:TRD_RS03875
uniprot id: B9KZD0
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12050
gene id: 309801:TRD_RS12050
uniprot id: B9L4C1
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09330
gene id: 309801:TRD_RS09330
uniprot id: B9L588
names: Cofactor
names: Similarity
messages: Belongs to the nitroreductase family.
messages: Binds 1 FMN per subunit.

309801:TRD RS01090
gene id: 309801:TRD_RS01090
uniprot id: B9KXN9
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RNA methyltransferase TrmD family.
messages: Cytoplasm
messages: Homodimer.
messages: Specifically methylates guanosine-37 in various tRNAs.

309801:TRD RS01655
gene id: 309801:TRD_RS01655
uniprot id: B9KY14
names: Similarity
messages: Belongs to the SAM hydrolase / SAM-dependent halogenase family.

309801:TRD RS04130
gene id: 309801:TRD_RS04130
uniprot id: B9KZH9
names: Similarity
messages: Belongs to the formate--tetrahydrofolate ligase family.

309801:TRD RS07805
gene id: 309801:TRD_RS07805
uniprot id: B9L0H2
names: Function
names: Subcellular Location Annotation
messages: Cytoplasm
messages: Member of the two-component regulatory system NreB/NreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. NreB functions as a direct oxygen sensor histidine kinase which is autophosphorylated, in the absence of oxygen, probably at the conserved histidine residue, and transfers its phosphate group probably to a conserved aspartate residue of NreC. NreB/NreC activates the expression of the nitrate (narGHJI) and nitrite (nir) reductase operons, as well as the putative nitrate transporter gene narT.

309801:TRD RS00290
gene id: 309801:TRD_RS00290
uniprot id: B9L280
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS08525
gene id: 309801:TRD_RS08525
uniprot id: B9L1S6
names: Similarity
messages: Belongs to the YciI family.

309801:TRD RS02505
gene id: 309801:TRD_RS02505
uniprot id: B9KYJ4
names: Function
names: Similarity
messages: Belongs to the TenA family.
messages: Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4-amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP).

309801:TRD RS06825
gene id: 309801:TRD_RS06825
uniprot id: B9L2Q4
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS13490
gene id: 309801:TRD_RS13490
uniprot id: B9KYG0
names: Similarity
messages: Belongs to the peptidase S11 family.

309801:TRD RS12795
gene id: 309801:TRD_RS12795
uniprot id: B9L4T8
names: Function
names: Miscellaneous
names: Similarity
messages: Belongs to the CofC family.
messages: Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
messages: The exact nature of the substrate is currently not known. This entry has been annotated based on its similarity to Actinobacteria.

309801:TRD RS02610
gene id: 309801:TRD_RS02610
uniprot id: B9KYL8
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Acts as a magnesium transporter.
messages: Belongs to the SLC41A transporter family.
messages: Cell membrane
messages: Homodimer.
messages: Membrane

309801:TRD RS03755
gene id: 309801:TRD_RS03755
uniprot id: B9KZA5
names: Function
names: Similarity
messages: Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
messages: Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.

309801:TRD RS01480
gene id: 309801:TRD_RS01480
uniprot id: B9KXX3
names: Similarity
messages: Belongs to the LarC family.

309801:TRD RS00120
gene id: 309801:TRD_RS00120
uniprot id: B9L1C4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the glutaminase PdxT/SNO family.
messages: Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
messages: In the presence of PdxS, forms a dodecamer of heterodimers. Only shows activity in the heterodimer.

309801:TRD RS07590
gene id: 309801:TRD_RS07590
uniprot id: B9L0D0
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the thiolase-like superfamily. FabH family.
messages: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.
messages: Cytoplasm
messages: Homodimer.
messages: The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH.

309801:TRD RS02225
gene id: 309801:TRD_RS02225
uniprot id: B9KYD8
names: Function
messages: The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.

309801:TRD RS11210
gene id: 309801:TRD_RS11210
uniprot id: B9L3T2
names: Similarity
messages: Belongs to the fabD family.

309801:TRD RS04220
gene id: 309801:TRD_RS04220
uniprot id: B9KZS4
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the adenosylhomocysteinase family.
messages: Binds 1 NAD(+) per subunit.
messages: Cytoplasm
messages: May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

309801:TRD RS10785
gene id: 309801:TRD_RS10785
uniprot id: B9L3I6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS10210
gene id: 309801:TRD_RS10210
uniprot id: B9L356
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Bacterial flagellum
messages: Belongs to the FliD family.
messages: Homopentamer.
messages: Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
messages: Secreted

309801:TRD RS05700
gene id: 309801:TRD_RS05700
uniprot id: B9L1G2
names: Function
names: Similarity
messages: Belongs to the CcmH/CycL/Ccl2/NrfF family.
messages: Possible subunit of a heme lyase.

309801:TRD RS05745
gene id: 309801:TRD_RS05745
uniprot id: B9L1H1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase alpha/beta chains family.
messages: Cell membrane
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.
messages: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.

309801:TRD RS11135
gene id: 309801:TRD_RS11135
uniprot id: B9L3R4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07175
gene id: 309801:TRD_RS07175
uniprot id: B9KZR5
names: Similarity
messages: Belongs to the glycosyltransferase 2 family.

309801:TRD RS10200
gene id: 309801:TRD_RS10200
uniprot id: B9L353
names: Similarity
messages: Belongs to the methyl-accepting chemotaxis (MCP) protein family.

309801:TRD RS05310
gene id: 309801:TRD_RS05310
uniprot id: B9L0S1
names: Similarity
messages: Belongs to the 6-phosphogluconate dehydrogenase family.

309801:TRD RS03800
gene id: 309801:TRD_RS03800
uniprot id: B9KZB5
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL20 family.
messages: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

309801:TRD RS04545
gene id: 309801:TRD_RS04545
uniprot id: B9KZZ1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS7 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.
messages: Part of the 30S ribosomal subunit. Contacts proteins S9 and S11.

309801:TRD RS05885
gene id: 309801:TRD_RS05885
uniprot id: B9L1J9
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
messages: Homotetramer.
messages: Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc.

309801:TRD RS08520
gene id: 309801:TRD_RS08520
uniprot id: B9L1S5
names: Similarity
messages: Belongs to the aldehyde dehydrogenase family.

309801:TRD RS04405
gene id: 309801:TRD_RS04405
uniprot id: B9KZW3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS13 family.
messages: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.
messages: Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.

309801:TRD RS03735
gene id: 309801:TRD_RS03735
uniprot id: B9KZA1
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the NnrD/CARKD family.
messages: Belongs to the NnrE/AIBP family.
messages: Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
messages: Binds 1 potassium ion per subunit.
messages: Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
messages: Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
messages: Homotetramer.
messages: In the C-terminal section; belongs to the NnrD/CARKD family.
messages: In the N-terminal section; belongs to the NnrE/AIBP family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS10700
gene id: 309801:TRD_RS10700
uniprot id: B9L3G9
names: Similarity
messages: Belongs to the enoyl-CoA hydratase/isomerase family.

309801:TRD RS04900
gene id: 309801:TRD_RS04900
uniprot id: B9L0J1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the PEPCase type 1 family.
messages: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
messages: Homotetramer.

309801:TRD RS12575
gene id: 309801:TRD_RS12575
uniprot id: B9L4N7
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS08785
gene id: 309801:TRD_RS08785
uniprot id: B9L1X9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RNase Y family.
messages: Cell membrane
messages: Endoribonuclease that initiates mRNA decay.

309801:TRD RS05440
gene id: 309801:TRD_RS05440
uniprot id: B9L0U6
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the DnaA family.
messages: Cytoplasm
messages: Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.

309801:TRD RS11655
gene id: 309801:TRD_RS11655
uniprot id: B9L429
names: Similarity
messages: Belongs to the HMG-CoA lyase family.

309801:TRD RS10075
gene id: 309801:TRD_RS10075
uniprot id: B9L321
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ABC-3 integral membrane protein family.
messages: Cell membrane
messages: Membrane

309801:TRD RS10745
gene id: 309801:TRD_RS10745
uniprot id: B9L3H8
names: Similarity
messages: Belongs to the DapA family.

309801:TRD RS03385
gene id: 309801:TRD_RS03385
uniprot id: B9KZ30
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the HAM1 NTPase family.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.

309801:TRD RS02435
gene id: 309801:TRD_RS02435
uniprot id: B9KYI0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the Mrp/NBP35 ATP-binding proteins family.
messages: Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.
messages: Homodimer.
messages: In the C-terminal section; belongs to the Mrp/NBP35 ATP-binding proteins family.
messages: In the N-terminal section; belongs to the MIP18 family.

309801:TRD RS04465
gene id: 309801:TRD_RS04465
uniprot id: B9KZX5
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL5 family.
messages: Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.
messages: This is 1 of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.

309801:TRD RS10675
gene id: 309801:TRD_RS10675
uniprot id: B9L3G4
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS11795
gene id: 309801:TRD_RS11795
uniprot id: B9L461
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09710
gene id: 309801:TRD_RS09710
uniprot id: B9L5H1
names: Similarity
messages: In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.

309801:TRD RS07150
gene id: 309801:TRD_RS07150
uniprot id: B9KZR0
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.
messages: Binds 1 zinc ion per subunit.
messages: Cytoplasm
messages: Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
messages: Monomer.

309801:TRD RS07645
gene id: 309801:TRD_RS07645
uniprot id: B9L0E1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
messages: Cytoplasm
messages: Homodimer. Forms a heterotetramer with IscU, interacts with other sulfur acceptors.
messages: Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.

309801:TRD RS01530
gene id: 309801:TRD_RS01530
uniprot id: B9KXY8
names: Cofactor
names: Similarity
messages: Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
messages: Binds 1 [2Fe-2S] cluster.
messages: Binds 1 [3Fe-4S] cluster.
messages: Binds 1 [4Fe-4S] cluster.

309801:TRD RS01380
gene id: 309801:TRD_RS01380
uniprot id: B9KXV3
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
messages: Binds 1 zinc ion per subunit.
messages: Cell membrane
messages: Homohexamer.
messages: In the C-terminal section; belongs to the peptidase M41 family.
messages: In the central section; belongs to the AAA ATPase family.

309801:TRD RS13970
gene id: 309801:TRD_RS13970
uniprot id: B9L4C2
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS00335
gene id: 309801:TRD_RS00335
uniprot id: B9L290
names: Similarity
messages: Belongs to the carbohydrate kinase PfkB family.

309801:TRD RS12545
gene id: 309801:TRD_RS12545
uniprot id: B9L4N0
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07855
gene id: 309801:TRD_RS07855
uniprot id: B9L0W7
names: Function
names: Similarity
names: Subunit
messages: Belongs to the chaperonin (HSP60) family.
messages: Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.
messages: Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.

309801:TRD RS00285
gene id: 309801:TRD_RS00285
uniprot id: B9L279
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MurCDEF family.
messages: Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).
messages: Cytoplasm

309801:TRD RS10860
gene id: 309801:TRD_RS10860
uniprot id: B9L3K2
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-I aminoacyl-tRNA synthetase family.
messages: Catalyzes the attachment of tryptophan to tRNA(Trp).
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS04005
gene id: 309801:TRD_RS04005
uniprot id: B9KZF3
names: Similarity
messages: Belongs to the RutC family.

309801:TRD RS05040
gene id: 309801:TRD_RS05040
uniprot id: B9L0L7
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL34 family.

309801:TRD RS08490
gene id: 309801:TRD_RS08490
uniprot id: B9L1R9
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the GTP-binding SRP family. FtsY subfamily.
messages: Cell membrane
messages: Cytoplasm
messages: Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
messages: Membrane
messages: Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.

309801:TRD RS13160
gene id: 309801:TRD_RS13160
uniprot id: B9L525
names: Similarity
messages: Belongs to the AAA ATPase family.

309801:TRD RS12135
gene id: 309801:TRD_RS12135
uniprot id: B9L4D8
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum basal body
messages: Belongs to the FliE family.

309801:TRD RS02805
gene id: 309801:TRD_RS02805
uniprot id: B9KYR0
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the ribulose-phosphate 3-epimerase family.
messages: Binds 1 divalent metal cation per subunit.
messages: Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.

309801:TRD RS08855
gene id: 309801:TRD_RS08855
uniprot id: B9L1Z4
names: Similarity
messages: Belongs to the threonine synthase family.

309801:TRD RS00515
gene id: 309801:TRD_RS00515
uniprot id: B9KXC1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the TrpB family.
messages: Tetramer of two alpha and two beta chains.
messages: The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

309801:TRD RS06570
gene id: 309801:TRD_RS06570
uniprot id: B9L2J6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS05065
gene id: 309801:TRD_RS05065
uniprot id: B9L0M1
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS10010
gene id: 309801:TRD_RS10010
uniprot id: B9L306
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ABC-2 integral membrane protein family.
messages: Cell membrane
messages: Membrane

309801:TRD RS12650
gene id: 309801:TRD_RS12650
uniprot id: B9L4Q7
names: Function
messages: This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.

309801:TRD RS03440
gene id: 309801:TRD_RS03440
uniprot id: B9KZ42
names: Function
names: Similarity
names: Subunit
messages: Belongs to the GcvP family. N-terminal subunit subfamily.
messages: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.
messages: The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits.

309801:TRD RS08720
gene id: 309801:TRD_RS08720
uniprot id: B9L1W6
names: Similarity
messages: Belongs to the HypE family.

309801:TRD RS01875
gene id: 309801:TRD_RS01875
uniprot id: B9KY63
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MIP/aquaporin (TC 1.A.8) family.
messages: Membrane

309801:TRD RS00275
gene id: 309801:TRD_RS00275
uniprot id: B9L277
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MurCDEF family. MurF subfamily.
messages: Cytoplasm
messages: Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.

309801:TRD RS13095
gene id: 309801:TRD_RS13095
uniprot id: B9L508
names: Similarity
messages: Belongs to the peptidase A24 family.

309801:TRD RS09010
gene id: 309801:TRD_RS09010
uniprot id: B9L229
names: Similarity
messages: Belongs to the metallophosphoesterase superfamily. YfcE family.

309801:TRD RS09435
gene id: 309801:TRD_RS09435
uniprot id: B9L5A9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Bacterial flagellum basal body
messages: Belongs to the FliR/MopE/SpaR family.
messages: Cell membrane
messages: Membrane
messages: Role in flagellar biosynthesis.

309801:TRD RS02900
gene id: 309801:TRD_RS02900
uniprot id: B9KYT2
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RuvA family.
messages: Cytoplasm
messages: Has three domains with a flexible linker between the domains II and III and assumes an 'L' shape. Domain III is highly mobile and contacts RuvB.
messages: Homotetramer. Forms an RuvA(8)-RuvB(12)-Holliday junction (HJ) complex. HJ DNA is sandwiched between 2 RuvA tetramers; dsDNA enters through RuvA and exits via RuvB. An RuvB hexamer assembles on each DNA strand where it exits the tetramer. Each RuvB hexamer is contacted by two RuvA subunits (via domain III) on 2 adjacent RuvB subunits; this complex drives branch migration. In the full resolvosome a probable DNA-RuvA(4)-RuvB(12)-RuvC(2) complex forms which resolves the HJ.
messages: The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair, while the RuvA-RuvB complex plays an important role in the rescue of blocked DNA replication forks via replication fork reversal (RFR). RuvA specifically binds to HJ cruciform DNA, conferring on it an open structure. The RuvB hexamer acts as an ATP-dependent pump, pulling dsDNA into and through the RuvAB complex. HJ branch migration allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves the cruciform DNA.

309801:TRD RS06670
gene id: 309801:TRD_RS06670
uniprot id: B9L2L9
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS10665
gene id: 309801:TRD_RS10665
uniprot id: B9L3G2
names: Caution
names: Cofactor
names: Similarity
names: Subunit
messages: Belongs to the ferredoxin--NADP reductase type 2 family.
messages: Binds 1 FAD per subunit.
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS04860
gene id: 309801:TRD_RS04860
uniprot id: B9L0I3
names: Similarity
messages: Belongs to the ParB family.

309801:TRD RS06440
gene id: 309801:TRD_RS06440
uniprot id: B9L2H0
names: Cofactor
names: Similarity
messages: Belongs to the DNA photolyase family.
messages: Binds 1 FAD per subunit.

309801:TRD RS04225
gene id: 309801:TRD_RS04225
uniprot id: B9KZS5
names: Function
names: Similarity
messages: Belongs to the EIF-2B alpha/beta/delta subunits family. MtnA subfamily.
messages: Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).

309801:TRD RS10780
gene id: 309801:TRD_RS10780
uniprot id: B9L3I5
names: Subunit
messages: Homodimer.

309801:TRD RS00855
gene id: 309801:TRD_RS00855
uniprot id: B9KXJ0
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the KAE1 / TsaD family.
messages: Binds 1 Fe(2+) ion per subunit.
messages: Cytoplasm
messages: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.

309801:TRD RS11735
gene id: 309801:TRD_RS11735
uniprot id: B9L448
names: Function
names: Similarity
messages: Belongs to the aconitase/IPM isomerase family.
messages: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

309801:TRD RS08375
gene id: 309801:TRD_RS08375
uniprot id: B9L182
names: Similarity
messages: Belongs to the class-II aminoacyl-tRNA synthetase family.

309801:TRD RS10890
gene id: 309801:TRD_RS10890
uniprot id: B9L3K8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12250
gene id: 309801:TRD_RS12250
uniprot id: B9L4G1
names: Similarity
messages: Belongs to the trans-sulfuration enzymes family.

309801:TRD RS05750
gene id: 309801:TRD_RS05750
uniprot id: B9L1H2
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase delta chain family.
messages: Cell membrane
messages: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
messages: F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.
messages: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction.

309801:TRD RS03840
gene id: 309801:TRD_RS03840
uniprot id: B9KZC3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
messages: Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.
messages: Homohexamer. Dimer of a homotrimer.

309801:TRD RS12335
gene id: 309801:TRD_RS12335
uniprot id: B9L4H9
names: Similarity
messages: Belongs to the UPRTase family.

309801:TRD RS03100
gene id: 309801:TRD_RS03100
uniprot id: B9KYX0
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL33 family.

309801:TRD RS00210
gene id: 309801:TRD_RS00210
uniprot id: B9L262
names: Similarity
messages: Belongs to the ETF-QO/FixC family.

309801:TRD RS03515
gene id: 309801:TRD_RS03515
uniprot id: B9KZ55
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
messages: Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS08680
gene id: 309801:TRD_RS08680
uniprot id: B9L1V8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS11920
gene id: 309801:TRD_RS11920
uniprot id: B9L491
names: Function
names: Similarity
messages: Belongs to the sigma-70 factor family.
messages: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.

309801:TRD RS01760
gene id: 309801:TRD_RS01760
uniprot id: B9KY37
names: Similarity
messages: Belongs to the UPF0051 (ycf24) family.

309801:TRD RS02935
gene id: 309801:TRD_RS02935
uniprot id: B9KYT9
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the BPG-independent phosphoglycerate mutase family.
messages: Binds 2 manganese ions per subunit.
messages: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate.
messages: Monomer.

309801:TRD RS06455
gene id: 309801:TRD_RS06455
uniprot id: B9L2H3
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
messages: Binds 2 Mg(2+) ions per subunit.
messages: Cytoplasm
messages: Homohexamer.
messages: Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS08805
gene id: 309801:TRD_RS08805
uniprot id: B9L1Y3
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS06340
gene id: 309801:TRD_RS06340
uniprot id: B9L2E7
names: Caution
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the vitamin-B12 independent methionine synthase family.
messages: Binds 1 zinc ion per subunit.
messages: Binds 2 Zn(2+) ions per subunit.
messages: Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS10115
gene id: 309801:TRD_RS10115
uniprot id: B9L332
names: Similarity
messages: Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 5 (UDGb) family.

309801:TRD RS04495
gene id: 309801:TRD_RS04495
uniprot id: B9KZY1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS3 family.
messages: Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.
messages: Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.

309801:TRD RS13835
gene id: 309801:TRD_RS13835
uniprot id: B9L341
names: Similarity
messages: Belongs to the CdaR family.

309801:TRD RS07140
gene id: 309801:TRD_RS07140
uniprot id: B9KZQ8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
messages: Cell membrane

309801:TRD RS01910
gene id: 309801:TRD_RS01910
uniprot id: B9KY70
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the DapB family.
messages: Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
messages: Cytoplasm
messages: Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction.

309801:TRD RS02850
gene id: 309801:TRD_RS02850
uniprot id: B9KYR9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the polyribonucleotide nucleotidyltransferase family.
messages: Cytoplasm
messages: Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.

309801:TRD RS01025
gene id: 309801:TRD_RS01025
uniprot id: B9KXM5
names: Cofactor
names: Similarity
names: Subunit
messages: Belongs to the CarB family.
messages: Binds 4 Mg(2+) or Mn(2+) ions per subunit.
messages: Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.

309801:TRD RS07670
gene id: 309801:TRD_RS07670
uniprot id: B9L0E6
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the GrpE family.
messages: Cytoplasm
messages: Homodimer.
messages: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.

309801:TRD RS02215
gene id: 309801:TRD_RS02215
uniprot id: B9KYD5
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS03555
gene id: 309801:TRD_RS03555
uniprot id: B9KZ64
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the gluconeogenesis factor family.
messages: Cytoplasm
messages: Required for morphogenesis under gluconeogenic growth conditions.

309801:TRD RS06965
gene id: 309801:TRD_RS06965
uniprot id: B9KZM2
names: Similarity
messages: Belongs to the 2-oxoacid dehydrogenase family.

309801:TRD RS09285
gene id: 309801:TRD_RS09285
uniprot id: B9L577
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.
messages: Membrane

309801:TRD RS07840
gene id: 309801:TRD_RS07840
uniprot id: B9L0H9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS13115
gene id: 309801:TRD_RS13115
uniprot id: B9L513
names: Cofactor
names: Similarity
messages: Belongs to the peptidase M42 family.
messages: Binds 2 divalent metal cations per subunit.

309801:TRD RS04450
gene id: 309801:TRD_RS04450
uniprot id: B9KZX2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL18 family.
messages: Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.
messages: This is one of the proteins that bind and probably mediate the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.

309801:TRD RS08815
gene id: 309801:TRD_RS08815
uniprot id: B9L1Y5
names: Similarity
messages: Belongs to the DinB family.

309801:TRD RS13630
gene id: 309801:TRD_RS13630
uniprot id: B9L1P5
names: Function
names: Similarity
messages: Belongs to the GHMP kinase family. IspE subfamily.
messages: Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.

309801:TRD RS07545
gene id: 309801:TRD_RS07545
uniprot id: B9L0C1
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the polypeptide deformylase family.
messages: Binds 1 Fe(2+) ion.
messages: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.

309801:TRD RS05390
gene id: 309801:TRD_RS05390
uniprot id: B9L0T6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS08305
gene id: 309801:TRD_RS08305
uniprot id: B9L167
names: Function
names: Similarity
messages: Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
messages: Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate.

309801:TRD RS05510
gene id: 309801:TRD_RS05510
uniprot id: B9L0W1
names: Similarity
messages: Belongs to the DSD1 family.

309801:TRD RS04950
gene id: 309801:TRD_RS04950
uniprot id: B9L0K0
names: Similarity
messages: Belongs to the peptidase M20A family.

309801:TRD RS02595
gene id: 309801:TRD_RS02595
uniprot id: B9KYL5
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the 2-oxoacid dehydrogenase family.
messages: Binds 1 lipoyl cofactor covalently.
messages: E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).

309801:TRD RS02585
gene id: 309801:TRD_RS02585
uniprot id: B9KYL3
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS09975
gene id: 309801:TRD_RS09975
uniprot id: B9L2Z5
names: Similarity
messages: Belongs to the TPP enzyme family.

309801:TRD RS01065
gene id: 309801:TRD_RS01065
uniprot id: B9KXN3
names: Similarity
messages: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.

309801:TRD RS00635
gene id: 309801:TRD_RS00635
uniprot id: B9KXE5
names: Similarity
messages: Belongs to the RuBisCO large chain family.

309801:TRD RS01070
gene id: 309801:TRD_RS01070
uniprot id: B9KXN4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS02625
gene id: 309801:TRD_RS02625
uniprot id: B9KYM2
names: Subcellular Location Annotation
messages: Cytoplasm
messages: Nucleus

309801:TRD RS05420
gene id: 309801:TRD_RS05420
uniprot id: B9L0U2
names: Similarity
messages: Belongs to the carotenoid/retinoid oxidoreductase family.

309801:TRD RS00465
gene id: 309801:TRD_RS00465
uniprot id: B9L2B5
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the bacterial CoaD family.
messages: Cytoplasm
messages: Homohexamer.
messages: Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate.

309801:TRD RS01050
gene id: 309801:TRD_RS01050
uniprot id: B9KXN0
names: Cofactor
names: Function
names: PTM
names: Similarity
names: Subunit
messages: Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
messages: Binds 1 pyruvoyl group covalently per subunit.
messages: Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
messages: Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers.
messages: Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.

309801:TRD RS01755
gene id: 309801:TRD_RS01755
uniprot id: B9KY36
names: Similarity
messages: Belongs to the UPF0051 (ycf24) family.

309801:TRD RS00095
gene id: 309801:TRD_RS00095
uniprot id: B9L1B9
names: Similarity
messages: In the N-terminal section; belongs to the CRISPR-associated nuclease Cas3-HD family.
messages: In the central section; belongs to the CRISPR-associated helicase Cas3 family.

309801:TRD RS04505
gene id: 309801:TRD_RS04505
uniprot id: B9KZY3
names: Function
names: Similarity
messages: Belongs to the universal ribosomal protein uS19 family.
messages: Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.

309801:TRD RS02295
gene id: 309801:TRD_RS02295
uniprot id: B9KYF2
names: Similarity
messages: Belongs to the LysR transcriptional regulatory family.

309801:TRD RS10915
gene id: 309801:TRD_RS10915
uniprot id: B9L3L3
names: Similarity
messages: Belongs to the LOG family.

309801:TRD RS00540
gene id: 309801:TRD_RS00540
uniprot id: B9KXC6
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.
messages: Belongs to the RimM family.
messages: Binds ribosomal protein uS19.
messages: Cytoplasm
messages: The PRC barrel domain binds ribosomal protein uS19.

309801:TRD RS13585
gene id: 309801:TRD_RS13585
uniprot id: B9L0T0
names: Similarity
messages: Belongs to the tRNA methyltransferase O family.

309801:TRD RS13245
gene id: 309801:TRD_RS13245
uniprot id: B9L544
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the peptidase M3B family.
messages: Binds 1 zinc ion.
messages: Has oligopeptidase activity and degrades a variety of small bioactive peptides.

309801:TRD RS11625
gene id: 309801:TRD_RS11625
uniprot id: B9L425
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS01130
gene id: 309801:TRD_RS01130
uniprot id: B9KXP8
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the EPSP synthase family.
messages: Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Monomer.

309801:TRD RS00810
gene id: 309801:TRD_RS00810
uniprot id: B9KXI1
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the radical SAM superfamily. Lipoyl synthase family.
messages: Binds 2 [4Fe-4S] clusters per subunit. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.
messages: Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
messages: Cytoplasm

309801:TRD RS02510
gene id: 309801:TRD_RS02510
uniprot id: B9KYJ6
names: Similarity
messages: Belongs to the glucose-1-phosphate thymidylyltransferase family.

309801:TRD RS00790
gene id: 309801:TRD_RS00790
uniprot id: B9KXH7
names: Function
names: Similarity
names: Subunit
messages: Belongs to the GcvP family. C-terminal subunit subfamily.
messages: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.
messages: The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits.

309801:TRD RS12990
gene id: 309801:TRD_RS12990
uniprot id: B9L4Y3
names: Similarity
messages: Belongs to the zinc-containing alcohol dehydrogenase family.

309801:TRD RS07820
gene id: 309801:TRD_RS07820
uniprot id: B9L0H5
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS02515
gene id: 309801:TRD_RS02515
uniprot id: B9KYJ7
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-I aminoacyl-tRNA synthetase family.
messages: Cytoplasm
messages: Monomer.

309801:TRD RS08120
gene id: 309801:TRD_RS08120
uniprot id: B9L124
names: Similarity
messages: Belongs to the 2-oxoacid dehydrogenase family.

309801:TRD RS00295
gene id: 309801:TRD_RS00295
uniprot id: B9L281
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MurCDEF family.
messages: Cell wall formation.
messages: Cytoplasm

309801:TRD RS09675
gene id: 309801:TRD_RS09675
uniprot id: B9L5G2
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09395
gene id: 309801:TRD_RS09395
uniprot id: B9L5A1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the FliN/MopA/SpaO family.
messages: Membrane

309801:TRD RS08470
gene id: 309801:TRD_RS08470
uniprot id: B9L1R5
names: Function
names: Similarity
messages: Belongs to the ribonucleoside diphosphate reductase class-2 family.
messages: Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.

309801:TRD RS10925
gene id: 309801:TRD_RS10925
uniprot id: B9L3L6
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
messages: Binds 1 FAD per subunit.
messages: Homodimer.
messages: Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0).

309801:TRD RS01495
gene id: 309801:TRD_RS01495
uniprot id: B9KXX6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS00695
gene id: 309801:TRD_RS00695
uniprot id: B9KXF7
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the GcvH family.
messages: Binds 1 lipoyl cofactor covalently.
messages: The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
messages: The glycine cleavage system is composed of four proteins: P, T, L and H.

309801:TRD RS08555
gene id: 309801:TRD_RS08555
uniprot id: B9L1T2
names: Similarity
messages: Belongs to the PstS family.

309801:TRD RS03300
gene id: 309801:TRD_RS03300
uniprot id: B9KZ09
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RuvB family.
messages: Cytoplasm
messages: Has 3 domains, the large (RuvB-L) and small ATPase (RuvB-S) domains and the C-terminal head (RuvB-H) domain. The head domain binds DNA, while the ATPase domains jointly bind ATP, ADP or are empty depending on the state of the subunit in the translocation cycle. During a single DNA translocation step the structure of each domain remains the same, but their relative positions change.
messages: Homohexamer. Forms an RuvA(8)-RuvB(12)-Holliday junction (HJ) complex. HJ DNA is sandwiched between 2 RuvA tetramers; dsDNA enters through RuvA and exits via RuvB. An RuvB hexamer assembles on each DNA strand where it exits the tetramer. Each RuvB hexamer is contacted by two RuvA subunits (via domain III) on 2 adjacent RuvB subunits; this complex drives branch migration. In the full resolvosome a probable DNA-RuvA(4)-RuvB(12)-RuvC(2) complex forms which resolves the HJ.
messages: The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair, while the RuvA-RuvB complex plays an important role in the rescue of blocked DNA replication forks via replication fork reversal (RFR). RuvA specifically binds to HJ cruciform DNA, conferring on it an open structure. The RuvB hexamer acts as an ATP-dependent pump, pulling dsDNA into and through the RuvAB complex. RuvB forms 2 homohexamers on either side of HJ DNA bound by 1 or 2 RuvA tetramers; 4 subunits per hexamer contact DNA at a time. Coordinated motions by a converter formed by DNA-disengaged RuvB subunits stimulates ATP hydrolysis and nucleotide exchange. Immobilization of the converter enables RuvB to convert the ATP-contained energy into a lever motion, pulling 2 nucleotides of DNA out of the RuvA tetramer per ATP hydrolyzed, thus driving DNA branch migration. The RuvB motors rotate together with the DNA substrate, which together with the progressing nucleotide cycle form the mechanistic basis for DNA recombination by continuous HJ branch migration. Branch migration allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves cruciform DNA.

309801:TRD RS02265
gene id: 309801:TRD_RS02265
uniprot id: B9KYE6
names: Function
names: Miscellaneous
names: Similarity
names: Subcellular Location Annotation
messages: Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.
messages: Belongs to the UppP family.
messages: Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.
messages: Cell membrane

309801:TRD RS11950
gene id: 309801:TRD_RS11950
uniprot id: B9L497
names: Similarity
messages: Belongs to the sigma-70 factor family. ECF subfamily.

309801:TRD RS12360
gene id: 309801:TRD_RS12360
uniprot id: B9L4I6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS07130
gene id: 309801:TRD_RS07130
uniprot id: B9KZQ5
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS00425
gene id: 309801:TRD_RS00425
uniprot id: B9L2A7
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL28 family.

309801:TRD RS01030
gene id: 309801:TRD_RS01030
uniprot id: B9KXM6
names: Similarity
names: Subunit
messages: Belongs to the CarA family.
messages: Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.

309801:TRD RS02020
gene id: 309801:TRD_RS02020
uniprot id: B9KY93
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the cytidylate kinase family. Type 1 subfamily.
messages: Cytoplasm

309801:TRD RS09715
gene id: 309801:TRD_RS09715
uniprot id: B9L5H2
names: Similarity
messages: Belongs to the enoyl-CoA hydratase/isomerase family.

309801:TRD RS10215
gene id: 309801:TRD_RS10215
uniprot id: B9L357
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the FliS family.
messages: cytosol

309801:TRD RS07830
gene id: 309801:TRD_RS07830
uniprot id: B9L0H7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS08385
gene id: 309801:TRD_RS08385
uniprot id: B9L184
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
messages: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily.
messages: Cytoplasm
messages: Homodimer, may be a subunit of the RNA degradosome.

309801:TRD RS09020
gene id: 309801:TRD_RS09020
uniprot id: B9L231
names: Similarity
messages: Belongs to the aminoglycoside phosphotransferase family.
messages: Belongs to the glycosyl hydrolase 13 family. TreS subfamily.

309801:TRD RS12105
gene id: 309801:TRD_RS12105
uniprot id: B9L4D2
names: Similarity
messages: Belongs to the transglycosylase Slt family.

309801:TRD RS11320
gene id: 309801:TRD_RS11320
uniprot id: B9L3V4
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03120
gene id: 309801:TRD_RS03120
uniprot id: B9KYX3
names: Function
names: PTM
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL11 family.
messages: Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
messages: One or more lysine residues are methylated.
messages: Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.

309801:TRD RS02835
gene id: 309801:TRD_RS02835
uniprot id: B9KYR6
names: Similarity
messages: Belongs to the UPF0235 family.

309801:TRD RS07815
gene id: 309801:TRD_RS07815
uniprot id: B9L0H4
names: Function
names: Similarity
messages: Belongs to the DNA mismatch repair MutL/HexB family.
messages: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

309801:TRD RS00995
gene id: 309801:TRD_RS00995
uniprot id: B9KXL8
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the FtsK/SpoIIIE/SftA family.
messages: Homohexamer. Forms a ring that surrounds DNA.
messages: Membrane

309801:TRD RS11395
gene id: 309801:TRD_RS11395
uniprot id: B9L3X2
names: Cofactor
names: Miscellaneous
names: Similarity
messages: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
messages: Binds 1 FAD per subunit.
messages: The active site is a redox-active disulfide bond.

309801:TRD RS05545
gene id: 309801:TRD_RS05545
uniprot id: B9L1D1
names: Similarity
messages: Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family.

309801:TRD RS08695
gene id: 309801:TRD_RS08695
uniprot id: B9L1W1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS06575
gene id: 309801:TRD_RS06575
uniprot id: B9L2J7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS13420
gene id: 309801:TRD_RS13420
uniprot id: B9KXR6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS06250
gene id: 309801:TRD_RS06250
uniprot id: B9L2C9
names: PTM
names: Similarity
names: Subunit
messages: Belongs to the gamma-glutamyltransferase family.
messages: Cleaved by autocatalysis into a large and a small subunit.
messages: This enzyme consists of two polypeptide chains, which are synthesized in precursor form from a single polypeptide.

309801:TRD RS08250
gene id: 309801:TRD_RS08250
uniprot id: B9L151
names: Similarity
messages: Belongs to the enoyl-CoA hydratase/isomerase family.

309801:TRD RS03250
gene id: 309801:TRD_RS03250
uniprot id: B9KYZ9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the heme-copper respiratory oxidase family.
messages: Cell membrane
messages: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
messages: Membrane

309801:TRD RS09055
gene id: 309801:TRD_RS09055
uniprot id: B9L238
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the FtsA/MreB family.
messages: Cytoplasm
messages: Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.
messages: Forms polymers.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS06695
gene id: 309801:TRD_RS06695
uniprot id: B9L2M4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL21 family.
messages: Part of the 50S ribosomal subunit. Contacts protein L20.
messages: This protein binds to 23S rRNA in the presence of protein L20.

309801:TRD RS01995
gene id: 309801:TRD_RS01995
uniprot id: B9KY88
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNase PH family.
messages: Homohexameric ring arranged as a trimer of dimers.
messages: Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.

309801:TRD RS03520
gene id: 309801:TRD_RS03520
uniprot id: B9KZ56
names: Similarity
messages: Belongs to the ribF family.

309801:TRD RS05915
gene id: 309801:TRD_RS05915
uniprot id: B9L1K5
names: Function
names: Similarity
messages: Belongs to the sigma-70 factor family.
messages: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.

309801:TRD RS11995
gene id: 309801:TRD_RS11995
uniprot id: B9L4A7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12110
gene id: 309801:TRD_RS12110
uniprot id: B9L4D3
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the FliJ family.
messages: Cell membrane
messages: Membrane

309801:TRD RS02325
gene id: 309801:TRD_RS02325
uniprot id: B9KYF8
names: Caution
names: Cofactor
names: Function
names: Similarity
messages: Binds 1 zinc ion per subunit.
messages: Binds 2 divalent metal cations per subunit. Magnesium or manganese.
messages: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
messages: Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
messages: In the C-terminal section; belongs to the GTP cyclohydrolase II family.
messages: In the N-terminal section; belongs to the DHBP synthase family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS10900
gene id: 309801:TRD_RS10900
uniprot id: B9L3L0
names: Subcellular Location Annotation
messages: Cell membrane
messages: Membrane

309801:TRD RS09405
gene id: 309801:TRD_RS09405
uniprot id: B9L5A3
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the FliL family.
messages: Cell membrane
messages: Controls the rotational direction of flagella during chemotaxis.
messages: Membrane

309801:TRD RS03585
gene id: 309801:TRD_RS03585
uniprot id: B9KZ70
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TatA/E family.
messages: Cell membrane
messages: Forms a complex with TatC.
messages: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

309801:TRD RS05605
gene id: 309801:TRD_RS05605
uniprot id: B9L1E3
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the peptidase S14 family.
messages: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.
messages: Cytoplasm
messages: Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.

309801:TRD RS05125
gene id: 309801:TRD_RS05125
uniprot id: B9L0N2
names: Similarity
messages: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS07010
gene id: 309801:TRD_RS07010
uniprot id: B9KZN1
names: Similarity
messages: Belongs to the sigma-70 factor family. ECF subfamily.

309801:TRD RS06035
gene id: 309801:TRD_RS06035
uniprot id: B9L1M7
names: Similarity
messages: Belongs to the CinA family.

309801:TRD RS08080
gene id: 309801:TRD_RS08080
uniprot id: B9L114
names: Similarity
messages: Belongs to the ycf81 family.

309801:TRD RS03725
gene id: 309801:TRD_RS03725
uniprot id: B9KZ99
names: Similarity
messages: Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.

309801:TRD RS06960
gene id: 309801:TRD_RS06960
uniprot id: B9KZM0
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS02910
gene id: 309801:TRD_RS02910
uniprot id: B9KYT4
names: Activity Regulation
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ATP phosphoribosyltransferase family. Long subfamily.
messages: Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
messages: Cytoplasm
messages: Feedback inhibited by histidine.

309801:TRD RS00800
gene id: 309801:TRD_RS00800
uniprot id: B9KXH9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.
messages: Cytoplasm

309801:TRD RS13880
gene id: 309801:TRD_RS13880
uniprot id: B9L3J0
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09415
gene id: 309801:TRD_RS09415
uniprot id: B9L5A5
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the exbB/tolQ family.
messages: Membrane

309801:TRD RS12875
gene id: 309801:TRD_RS12875
uniprot id: B9L4V6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS06950
gene id: 309801:TRD_RS06950
uniprot id: B9KZL8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09230
gene id: 309801:TRD_RS09230
uniprot id: B9L2T3
names: Similarity
messages: Belongs to the universal stress protein A family.

309801:TRD RS06045
gene id: 309801:TRD_RS06045
uniprot id: B9L1M8
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the endoribonuclease YbeY family.
messages: Binds 1 zinc ion.
messages: Cytoplasm
messages: Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.

309801:TRD RS10565
gene id: 309801:TRD_RS10565
uniprot id: B9L3E0
names: Caution
names: Function
names: Similarity
messages: Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
messages: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS08285
gene id: 309801:TRD_RS08285
uniprot id: B9L162
names: Similarity
messages: Belongs to the QNG1 protein family.

309801:TRD RS02825
gene id: 309801:TRD_RS02825
uniprot id: B9KYR4
names: Similarity
messages: Belongs to the glycosyl hydrolase 5 (cellulase A) family.

309801:TRD RS00340
gene id: 309801:TRD_RS00340
uniprot id: B9L291
names: Subcellular Location Annotation
messages: Endoplasmic reticulum
messages: Golgi apparatus
messages: Lysosome

309801:TRD RS04070
gene id: 309801:TRD_RS04070
uniprot id: B9KZG5
names: Function
names: Similarity
messages: Belongs to the trehalose phosphatase family.
messages: Removes the phosphate from trehalose 6-phosphate to produce free trehalose.

309801:TRD RS13545
gene id: 309801:TRD_RS13545
uniprot id: B9KZS6
names: Caution
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the shikimate kinase family.
messages: Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).
messages: Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
messages: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.
messages: Cytoplasm
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Monomer.

309801:TRD RS01830
gene id: 309801:TRD_RS01830
uniprot id: B9KY53
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS12760
gene id: 309801:TRD_RS12760
uniprot id: B9L4T1
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS05685
gene id: 309801:TRD_RS05685
uniprot id: B9L1F9
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CcmB/CycW/HelB family.
messages: Cell inner membrane
messages: Membrane
messages: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes.

309801:TRD RS05770
gene id: 309801:TRD_RS05770
uniprot id: B9L1H7
names: Activity Regulation
names: Function
names: Miscellaneous
names: Similarity
names: Subunit
messages: Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.
messages: Belongs to the CTP synthase family.
messages: CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.
messages: Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
messages: Homotetramer.

309801:TRD RS06690
gene id: 309801:TRD_RS06690
uniprot id: B9L2M3
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL27 family.

309801:TRD RS04705
gene id: 309801:TRD_RS04705
uniprot id: B9L019
names: Function
names: Induction
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
messages: Belongs to the peptidase S16 family.
messages: By heat shock.
messages: Cytoplasm
messages: Homohexamer. Organized in a ring with a central cavity.

309801:TRD RS07610
gene id: 309801:TRD_RS07610
uniprot id: B9L0D4
names: Function
names: Similarity
messages: Acts on leucine, isoleucine and valine.
messages: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS05740
gene id: 309801:TRD_RS05740
uniprot id: B9L1H0
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase gamma chain family.
messages: Cell membrane
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.
messages: Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.

309801:TRD RS06920
gene id: 309801:TRD_RS06920
uniprot id: B9KZL1
names: Similarity
messages: Belongs to the metallophosphoesterase superfamily. YfcE family.

309801:TRD RS03760
gene id: 309801:TRD_RS03760
uniprot id: B9KZA6
names: Similarity
messages: Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family.

309801:TRD RS01700
gene id: 309801:TRD_RS01700
uniprot id: B9KY24
names: Similarity
messages: Belongs to the homoserine dehydrogenase family.

309801:TRD RS08825
gene id: 309801:TRD_RS08825
uniprot id: B9L1Y8
names: Similarity
messages: Belongs to the pterin-4-alpha-carbinolamine dehydratase family.

309801:TRD RS07525
gene id: 309801:TRD_RS07525
uniprot id: B9L0B7
names: Function
names: Similarity
messages: Acts on leucine, isoleucine and valine.
messages: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.

309801:TRD RS07425
gene id: 309801:TRD_RS07425
uniprot id: B9L094
names: Similarity
messages: Belongs to the peptidase S8 family.

309801:TRD RS05560
gene id: 309801:TRD_RS05560
uniprot id: B9L1D4
names: Similarity
messages: Belongs to the BtpA family.

309801:TRD RS04890
gene id: 309801:TRD_RS04890
uniprot id: B9L0I9
names: Similarity
messages: Belongs to the carbohydrate kinase PfkB family.

309801:TRD RS02345
gene id: 309801:TRD_RS02345
uniprot id: B9KYG2
names: Function
messages: Translation factor necessary for the incorporation of selenocysteine into proteins. It probably replaces EF-Tu for the insertion of selenocysteine directed by the UGA codon. SelB binds GTP and GDP.

309801:TRD RS03965
gene id: 309801:TRD_RS03965
uniprot id: B9KZE5
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the AIR synthase family.
messages: Cytoplasm

309801:TRD RS12400
gene id: 309801:TRD_RS12400
uniprot id: B9L4J5
names: Function
names: Similarity
messages: Belongs to the anhydro-N-acetylmuramic acid kinase family.
messages: Catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.

309801:TRD RS03665
gene id: 309801:TRD_RS03665
uniprot id: B9KZ87
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RuvC family.
messages: Binds 2 Mg(2+) ion per subunit.
messages: Cytoplasm
messages: Homodimer which binds Holliday junction (HJ) DNA. The HJ becomes 2-fold symmetrical on binding to RuvC with unstacked arms; it has a different conformation from HJ DNA in complex with RuvA. In the full resolvosome a probable DNA-RuvA(4)-RuvB(12)-RuvC(2) complex forms which resolves the HJ.
messages: The RuvA-RuvB-RuvC complex processes Holliday junction (HJ) DNA during genetic recombination and DNA repair. Endonuclease that resolves HJ intermediates. Cleaves cruciform DNA by making single-stranded nicks across the HJ at symmetrical positions within the homologous arms, yielding a 5'-phosphate and a 3'-hydroxyl group; requires a central core of homology in the junction. The consensus cleavage sequence is 5'-(A/T)TT(C/G)-3'. Cleavage occurs on the 3'-side of the TT dinucleotide at the point of strand exchange. HJ branch migration catalyzed by RuvA-RuvB allows RuvC to scan DNA until it finds its consensus sequence, where it cleaves and resolves the cruciform DNA.

309801:TRD RS09445
gene id: 309801:TRD_RS09445
uniprot id: B9L5B1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
messages: Cell membrane
messages: Membrane
messages: Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin.

309801:TRD RS10260
gene id: 309801:TRD_RS10260
uniprot id: B9L370
names: Similarity
messages: Belongs to the bacterial solute-binding protein ModA family.

309801:TRD RS13895
gene id: 309801:TRD_RS13895
uniprot id: B9L3M5
names: Subcellular Location Annotation
messages: Cell membrane
messages: Membrane

309801:TRD RS05265
gene id: 309801:TRD_RS05265
uniprot id: B9L0R2
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the UPF0702 family.
messages: Cell membrane
messages: Membrane

309801:TRD RS03560
gene id: 309801:TRD_RS03560
uniprot id: B9KZ65
names: Similarity
messages: Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.

309801:TRD RS05170
gene id: 309801:TRD_RS05170
uniprot id: B9L0P3
names: Similarity
messages: Belongs to the YggT family.

309801:TRD RS04520
gene id: 309801:TRD_RS04520
uniprot id: B9KZY6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL4 family.
messages: Forms part of the polypeptide exit tunnel.
messages: One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
messages: Part of the 50S ribosomal subunit.

309801:TRD RS07315
gene id: 309801:TRD_RS07315
uniprot id: B9L070
names: Subcellular Location Annotation
messages: Endoplasmic reticulum
messages: Golgi apparatus
messages: Lysosome

309801:TRD RS07580
gene id: 309801:TRD_RS07580
uniprot id: B9L0C8
names: Function
names: Similarity
names: Subunit
messages: Belongs to the short-chain dehydrogenases/reductases (SDR) family.
messages: Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis.
messages: Homotetramer.

309801:TRD RS01840
gene id: 309801:TRD_RS01840
uniprot id: B9KY56
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ThiG family.
messages: Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
messages: Cytoplasm
messages: Homotetramer. Forms heterodimers with either ThiH or ThiS.

309801:TRD RS03415
gene id: 309801:TRD_RS03415
uniprot id: B9KZ37
names: Function
names: Subcellular Location Annotation
names: Subunit
messages: Cytoplasm
messages: Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.
messages: Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.

309801:TRD RS05830
gene id: 309801:TRD_RS05830
uniprot id: B9L1I8
names: Caution
names: Subunit
messages: Homotetramer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS08995
gene id: 309801:TRD_RS08995
uniprot id: B9L226
names: Function
names: Similarity
names: Subunit
messages: Belongs to the MinC family.
messages: Cell division inhibitor that blocks the formation of polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings. Prevents FtsZ polymerization.
messages: Interacts with MinD and FtsZ.

309801:TRD RS01640
gene id: 309801:TRD_RS01640
uniprot id: B9KY11
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the methylthiotransferase family. MiaB subfamily.
messages: Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.
messages: Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
messages: Cytoplasm
messages: Monomer.

309801:TRD RS03670
gene id: 309801:TRD_RS03670
uniprot id: B9KZ88
names: Similarity
messages: Belongs to the TlyA family.

309801:TRD RS01915
gene id: 309801:TRD_RS01915
uniprot id: B9KY71
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the DapA family.
messages: Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
messages: Cytoplasm
messages: Homotetramer; dimer of dimers.
messages: Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.

309801:TRD RS06675
gene id: 309801:TRD_RS06675
uniprot id: B9L2M0
names: Function
messages: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

309801:TRD RS01750
gene id: 309801:TRD_RS01750
uniprot id: B9KY35
names: Similarity
messages: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily.

309801:TRD RS13905
gene id: 309801:TRD_RS13905
uniprot id: B9L3N8
names: Similarity
messages: Belongs to the carbohydrate kinase PfkB family.

309801:TRD RS06730
gene id: 309801:TRD_RS06730
uniprot id: B9L2N0
names: Similarity
messages: Belongs to the small heat shock protein (HSP20) family.

309801:TRD RS04800
gene id: 309801:TRD_RS04800
uniprot id: B9L037
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the radical SAM superfamily. MoaA family.
messages: Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.
messages: Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.
messages: Monomer and homodimer.

309801:TRD RS06985
gene id: 309801:TRD_RS06985
uniprot id: B9KZM6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MgtC/SapB family.
messages: Membrane

309801:TRD RS02415
gene id: 309801:TRD_RS02415
uniprot id: B9KYH6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03630
gene id: 309801:TRD_RS03630
uniprot id: B9KZ80
names: Similarity
messages: Belongs to the complex I 51 kDa subunit family.

309801:TRD RS13035
gene id: 309801:TRD_RS13035
uniprot id: B9L4Z3
names: Similarity
messages: Belongs to the creatininase superfamily.

309801:TRD RS02045
gene id: 309801:TRD_RS02045
uniprot id: B9KY98
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ClpA/ClpB family.
messages: Cytoplasm
messages: Homohexamer. The oligomerization is ATP-dependent.
messages: Homohexamer; The oligomerization is ATP-dependent.
messages: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE.

309801:TRD RS13370
gene id: 309801:TRD_RS13370
uniprot id: B9L571
names: Similarity
messages: Belongs to the extradiol ring-cleavage dioxygenase family.

309801:TRD RS00055
gene id: 309801:TRD_RS00055
uniprot id: B9L1B1
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12015
gene id: 309801:TRD_RS12015
uniprot id: B9L4B1
names: Cofactor
names: Similarity
names: Subunit
messages: Belongs to the RtcB family.
messages: Binds 2 manganese ions per subunit.
messages: Monomer.

309801:TRD RS08065
gene id: 309801:TRD_RS08065
uniprot id: B9L111
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: A Gly-cisPro motif from one monomer fits into the active site of the other monomer to allow specific chiral rejection of L-amino acids.
messages: An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.
messages: Belongs to the DTD family.
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS09900
gene id: 309801:TRD_RS09900
uniprot id: B9L2X6
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the VKOR family.
messages: Membrane

309801:TRD RS01660
gene id: 309801:TRD_RS01660
uniprot id: B9KY15
names: PTM
names: Similarity
names: Subunit
messages: Belongs to the gamma-glutamyltransferase family.
messages: Cleaved by autocatalysis into a large and a small subunit.
messages: This enzyme consists of two polypeptide chains, which are synthesized in precursor form from a single polypeptide.

309801:TRD RS01250
gene id: 309801:TRD_RS01250
uniprot id: B9KXS7
names: Function
names: Similarity
names: Subunit
messages: Belongs to the SbcD family.
messages: Heterodimer of SbcC and SbcD.
messages: SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity.

309801:TRD RS00520
gene id: 309801:TRD_RS00520
uniprot id: B9KXC2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the TrpA family.
messages: Tetramer of two alpha and two beta chains.
messages: The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.

309801:TRD RS03980
gene id: 309801:TRD_RS03980
uniprot id: B9KZE8
names: Domain
names: Similarity
messages: Belongs to the PurH family.
messages: The IMP cyclohydrolase activity resides in the N-terminal region.

309801:TRD RS10095
gene id: 309801:TRD_RS10095
uniprot id: B9L327
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS09050
gene id: 309801:TRD_RS09050
uniprot id: B9L237
names: Function
names: Similarity
messages: Belongs to the MreC family.
messages: Involved in formation and maintenance of cell shape.

309801:TRD RS02525
gene id: 309801:TRD_RS02525
uniprot id: B9KYK0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the dCTP deaminase family.
messages: Catalyzes the deamination of dCTP to dUTP.
messages: Homotrimer.

309801:TRD RS12180
gene id: 309801:TRD_RS12180
uniprot id: B9L4E7
names: Similarity
messages: Belongs to the AOR/FOR family.

309801:TRD RS10400
gene id: 309801:TRD_RS10400
uniprot id: B9L398
names: Similarity
messages: Belongs to the isochorismate synthase family.

309801:TRD RS13910
gene id: 309801:TRD_RS13910
uniprot id: B9L3Q1
names: Similarity
messages: Belongs to the sigma-70 factor family. ECF subfamily.

309801:TRD RS08755
gene id: 309801:TRD_RS08755
uniprot id: B9L1X3
names: Similarity
messages: Belongs to the peptidase A31 family.

309801:TRD RS00050
gene id: 309801:TRD_RS00050
uniprot id: B9L1B0
names: Caution
names: Similarity
messages: Belongs to the peptidase C56 family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS02785
gene id: 309801:TRD_RS02785
uniprot id: B9KYQ9
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 3 subfamily.
messages: Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
messages: Consists of three domains: the N-terminal catalytic domain, the anticodon-binding domain and the C-terminal extension.
messages: Cytoplasm
messages: Homodimer.

309801:TRD RS01990
gene id: 309801:TRD_RS01990
uniprot id: B9KY87
names: Similarity
messages: Belongs to the AAA ATPase family. RarA/MGS1/WRNIP1 subfamily.

309801:TRD RS03705
gene id: 309801:TRD_RS03705
uniprot id: B9KZ95
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TatA/E family.
messages: Cell membrane
messages: Forms a complex with TatC.
messages: Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.

309801:TRD RS11260
gene id: 309801:TRD_RS11260
uniprot id: B9L3U2
names: Subcellular Location Annotation
messages: Cell membrane
messages: Membrane

309801:TRD RS05990
gene id: 309801:TRD_RS05990
uniprot id: B9L1L9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS05940
gene id: 309801:TRD_RS05940
uniprot id: B9L1L0
names: Function
names: Similarity
messages: Belongs to the pyruvate, phosphate/water dikinase regulatory protein family. PDRP subfamily.
messages: Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.

309801:TRD RS08405
gene id: 309801:TRD_RS08405
uniprot id: B9L188
names: Caution
names: Function
names: Similarity
messages: ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
messages: Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS10620
gene id: 309801:TRD_RS10620
uniprot id: B9L3F3
names: Similarity
messages: Belongs to the peptidase S11 family.

309801:TRD RS12085
gene id: 309801:TRD_RS12085
uniprot id: B9L4C8
names: Similarity
messages: Belongs to the flagella basal body rod proteins family.

309801:TRD RS03305
gene id: 309801:TRD_RS03305
uniprot id: B9KZ10
names: Similarity
messages: Belongs to the UPF0434 family.

309801:TRD RS07045
gene id: 309801:TRD_RS07045
uniprot id: B9KZN8
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS04415
gene id: 309801:TRD_RS04415
uniprot id: B9KZW5
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the IF-1 family.
messages: Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.
messages: Cytoplasm
messages: One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.

309801:TRD RS05790
gene id: 309801:TRD_RS05790
uniprot id: B9L1I1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the class-I aminoacyl-tRNA synthetase family.
messages: Cytoplasm

309801:TRD RS03135
gene id: 309801:TRD_RS03135
uniprot id: B9KYX6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL12 family.
messages: Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.
messages: Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors.

309801:TRD RS09005
gene id: 309801:TRD_RS09005
uniprot id: B9L228
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the MreD family.
messages: Membrane

309801:TRD RS07915
gene id: 309801:TRD_RS07915
uniprot id: B9L0Y0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
messages: Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-ketoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).
messages: Homodimer.

309801:TRD RS01145
gene id: 309801:TRD_RS01145
uniprot id: B9KXQ1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the SmpB family.
messages: Cytoplasm
messages: Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation.

309801:TRD RS04560
gene id: 309801:TRD_RS04560
uniprot id: B9KZZ4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase beta chain family.
messages: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
messages: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

309801:TRD RS10130
gene id: 309801:TRD_RS10130
uniprot id: B9L337
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS02855
gene id: 309801:TRD_RS02855
uniprot id: B9KYS0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS15 family.
messages: Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
messages: Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.

309801:TRD RS09115
gene id: 309801:TRD_RS09115
uniprot id: B9L2Q9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS03775
gene id: 309801:TRD_RS03775
uniprot id: B9KZB0
names: Function
names: Similarity
messages: Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.
messages: Belongs to the Fmt family.

309801:TRD RS05135
gene id: 309801:TRD_RS05135
uniprot id: B9L0N5
names: Similarity
messages: Belongs to the P(II) protein family.

309801:TRD RS12985
gene id: 309801:TRD_RS12985
uniprot id: B9L4Y0
names: Similarity
messages: Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.

309801:TRD RS07675
gene id: 309801:TRD_RS07675
uniprot id: P96133
names: Function
names: Induction
names: Similarity
messages: Acts as a chaperone.
messages: Belongs to the heat shock protein 70 family.
messages: By stress conditions e.g. heat shock (By similarity).

309801:TRD RS11310
gene id: 309801:TRD_RS11310
uniprot id: B9L3V2
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ABC-2 integral membrane protein family.
messages: Cell membrane
messages: Membrane

309801:TRD RS06495
gene id: 309801:TRD_RS06495
uniprot id: B9L2I1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the ferrochelatase family.
messages: Catalyzes the ferrous insertion into protoporphyrin IX.
messages: Cytoplasm

309801:TRD RS09480
gene id: 309801:TRD_RS09480
uniprot id: B9L5B8
names: Similarity
messages: Belongs to the flagella basal body rod proteins family.

309801:TRD RS01085
gene id: 309801:TRD_RS01085
uniprot id: B9KXN8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the UPF0410 family.
messages: Membrane

309801:TRD RS08645
gene id: 309801:TRD_RS08645
uniprot id: B9L1V1
names: Cofactor
names: Similarity
messages: Belongs to the peptidase M42 family.
messages: Binds 2 divalent metal cations per subunit.

309801:TRD RS02530
gene id: 309801:TRD_RS02530
uniprot id: B9KYK1
names: Similarity
messages: Belongs to the Cob(I)alamin adenosyltransferase family.

309801:TRD RS12100
gene id: 309801:TRD_RS12100
uniprot id: B9L4D1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Bacterial flagellum basal body
messages: Belongs to the flagella basal body rod proteins family.
messages: Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
messages: The basal body constitutes a major portion of the flagellar organelle and consists of a number of rings mounted on a central rod.

309801:TRD RS03050
gene id: 309801:TRD_RS03050
uniprot id: B9KYW2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the peptidase S24 family.
messages: Homodimer.
messages: Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.

309801:TRD RS02970
gene id: 309801:TRD_RS02970
uniprot id: B9KYU6
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the SecD/SecF family. SecD subfamily.
messages: Cell membrane
messages: Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Membrane
messages: Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.

309801:TRD RS03130
gene id: 309801:TRD_RS03130
uniprot id: B9KYX5
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL10 family.
messages: Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.
messages: Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.

309801:TRD RS02945
gene id: 309801:TRD_RS02945
uniprot id: B9KYU1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the PurK/PurT family.
messages: Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
messages: Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
messages: Homodimer.

309801:TRD RS05680
gene id: 309801:TRD_RS05680
uniprot id: B9L1F8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CcmC/CycZ/HelC family.
messages: Membrane

309801:TRD RS09535
gene id: 309801:TRD_RS09535
uniprot id: B9L5D1
names: Cofactor
messages: Binds 4 [4Fe-4S] clusters per subunit.

309801:TRD RS10660
gene id: 309801:TRD_RS10660
uniprot id: B9L3G1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS06810
gene id: 309801:TRD_RS06810
uniprot id: B9L2P9
names: Caution
names: Cofactor
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the DnaJ family.
messages: Binds 2 Zn(2+) ions per monomer.
messages: Cytoplasm
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
messages: The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.

309801:TRD RS11225
gene id: 309801:TRD_RS11225
uniprot id: B9L3T5
names: Function
names: Similarity
messages: Belongs to the DNA mismatch repair MutS family.
messages: This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.

309801:TRD RS11960
gene id: 309801:TRD_RS11960
uniprot id: B9L499
names: Similarity
messages: Belongs to the peptidase M29 family.

309801:TRD RS01545
gene id: 309801:TRD_RS01545
uniprot id: B9KXZ1
names: Similarity
messages: Belongs to the cytochrome b560 family.

309801:TRD RS07060
gene id: 309801:TRD_RS07060
uniprot id: B9KZP1
names: Similarity
messages: Belongs to the DNA glycosylase MPG family.

309801:TRD RS00890
gene id: 309801:TRD_RS00890
uniprot id: B9KXJ7
names: Similarity
messages: Belongs to the peptidase C40 family.

309801:TRD RS09475
gene id: 309801:TRD_RS09475
uniprot id: B9L5B7
names: Similarity
messages: Belongs to the flagella basal body rod proteins family.

309801:TRD RS06470
gene id: 309801:TRD_RS06470
uniprot id: B9L2H6
names: Similarity
messages: Belongs to the UPF0166 family.

309801:TRD RS12365
gene id: 309801:TRD_RS12365
uniprot id: B9L4I7
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane
messages: Membrane

309801:TRD RS03420
gene id: 309801:TRD_RS03420
uniprot id: B9KZ38
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the FGAMS family.
messages: Cytoplasm
messages: Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.
messages: Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL.

309801:TRD RS13070
gene id: 309801:TRD_RS13070
uniprot id: B9L502
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the argininosuccinate synthase family. Type 1 subfamily.
messages: Cytoplasm
messages: Homotetramer.

309801:TRD RS02725
gene id: 309801:TRD_RS02725
uniprot id: B9KYP6
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the quinolinate synthase family. Type 2 subfamily.
messages: Binds 1 [4Fe-4S] cluster per subunit.
messages: Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
messages: Cytoplasm

309801:TRD RS05260
gene id: 309801:TRD_RS05260
uniprot id: B9L0R1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the TACO1 family.
messages: Cytoplasm

309801:TRD RS04470
gene id: 309801:TRD_RS04470
uniprot id: B9KZX6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL24 family.
messages: One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
messages: One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
messages: Part of the 50S ribosomal subunit.

309801:TRD RS10520
gene id: 309801:TRD_RS10520
uniprot id: B9L3C6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS00630
gene id: 309801:TRD_RS00630
uniprot id: B9KXE4
names: Similarity
messages: Belongs to the four-carbon acid sugar kinase family.

309801:TRD RS02490
gene id: 309801:TRD_RS02490
uniprot id: B9KYJ1
names: Similarity
messages: Belongs to the bacterial ribosomal protein bS21 family.

309801:TRD RS05070
gene id: 309801:TRD_RS05070
uniprot id: B9L0M2
names: Function
messages: Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).

309801:TRD RS03370
gene id: 309801:TRD_RS03370
uniprot id: B9KZ27
names: Subcellular Location Annotation
messages: Cytoplasm

309801:TRD RS06540
gene id: 309801:TRD_RS06540
uniprot id: B9L2J0
names: Similarity
messages: Belongs to the 4-hydroxy-2-oxovalerate aldolase family.

309801:TRD RS04990
gene id: 309801:TRD_RS04990
uniprot id: B9L0K8
names: Function
names: Similarity
names: Subunit
messages: Belongs to the MoaC family.
messages: Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).
messages: Homohexamer; trimer of dimers.

309801:TRD RS03095
gene id: 309801:TRD_RS03095
uniprot id: B9KYW9
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
messages: Cytoplasm
messages: Monomer.
messages: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.

309801:TRD RS01585
gene id: 309801:TRD_RS01585
uniprot id: B9KY00
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RNA methyltransferase RsmE family.
messages: Cytoplasm
messages: Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.

309801:TRD RS09655
gene id: 309801:TRD_RS09655
uniprot id: B9L5F6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS01720
gene id: 309801:TRD_RS01720
uniprot id: B9KY28
names: Similarity
messages: Belongs to the glycosyltransferase 20 family.

309801:TRD RS05515
gene id: 309801:TRD_RS05515
uniprot id: B9L0W2
names: Caution
names: Function
names: Similarity
messages: Belongs to the GART family.
messages: Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS13865
gene id: 309801:TRD_RS13865
uniprot id: B9L3E7
names: Similarity
messages: Belongs to the universal stress protein A family.

309801:TRD RS08175
gene id: 309801:TRD_RS08175
uniprot id: B9L135
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the SMC family.
messages: Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.
messages: Cytoplasm
messages: Homodimer.
messages: Required for chromosome condensation and partitioning.

309801:TRD RS01420
gene id: 309801:TRD_RS01420
uniprot id: B9KXW0
names: Similarity
messages: Belongs to the 3-oxoacid CoA-transferase subunit B family.

309801:TRD RS13915
gene id: 309801:TRD_RS13915
uniprot id: B9L3R2
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS02500
gene id: 309801:TRD_RS02500
uniprot id: B9KYJ3
names: Function
names: Similarity
messages: Belongs to the TenA family.
messages: Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway.

309801:TRD RS07845
gene id: 309801:TRD_RS07845
uniprot id: B9L0I0
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS08320
gene id: 309801:TRD_RS08320
uniprot id: B9L171
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I 30 kDa subunit family.
messages: Cell membrane
messages: NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.
messages: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

309801:TRD RS00115
gene id: 309801:TRD_RS00115
uniprot id: B9L1C3
names: Similarity
messages: Belongs to the HypE family.

309801:TRD RS12195
gene id: 309801:TRD_RS12195
uniprot id: B9L4F0
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the DedA family.
messages: Cell membrane
messages: Membrane

309801:TRD RS11785
gene id: 309801:TRD_RS11785
uniprot id: B9L459
names: Similarity
messages: Belongs to the peptidase M24B family.

309801:TRD RS06725
gene id: 309801:TRD_RS06725
uniprot id: B9L2M9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the major facilitator superfamily. TCR/Tet family.
messages: Membrane

309801:TRD RS12690
gene id: 309801:TRD_RS12690
uniprot id: B9L4R5
names: Function
messages: Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate.

309801:TRD RS05895
gene id: 309801:TRD_RS05895
uniprot id: B9L1K1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).
messages: Belongs to the AccA family.
messages: Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
messages: Cytoplasm

309801:TRD RS10545
gene id: 309801:TRD_RS10545
uniprot id: B9L3D5
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family. Azg-like subfamily.
messages: Cell membrane
messages: Membrane

309801:TRD RS06100
gene id: 309801:TRD_RS06100
uniprot id: B9L1N9
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the GroES chaperonin family.
messages: Cytoplasm
messages: Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.
messages: Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.

309801:TRD RS02965
gene id: 309801:TRD_RS02965
uniprot id: B9KYU5
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the SecD/SecF family. SecF subfamily.
messages: Cell membrane
messages: Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.
messages: Membrane
messages: Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.

309801:TRD RS13330
gene id: 309801:TRD_RS13330
uniprot id: B9L563
names: Similarity
messages: Belongs to the peptidase S33 family.

309801:TRD RS04410
gene id: 309801:TRD_RS04410
uniprot id: B9KZW4
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL36 family.

309801:TRD RS05490
gene id: 309801:TRD_RS05490
uniprot id: B9L0V7
names: Similarity
messages: Belongs to the phosphohexose mutase family.

309801:TRD RS07955
gene id: 309801:TRD_RS07955
uniprot id: B9L0Y8
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the elongation factor P family.
messages: Cytoplasm
messages: Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

309801:TRD RS05220
gene id: 309801:TRD_RS05220
uniprot id: B9L0Q3
names: Similarity
names: Subunit
messages: Belongs to the ALAD family.
messages: Homooctamer.

309801:TRD RS00330
gene id: 309801:TRD_RS00330
uniprot id: B9L289
names: Similarity
messages: Belongs to the thioredoxin family.

309801:TRD RS02755
gene id: 309801:TRD_RS02755
uniprot id: B9KYQ3
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNase Z family.
messages: Binds 2 Zn(2+) ions.
messages: Homodimer.
messages: Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA.

309801:TRD RS08330
gene id: 309801:TRD_RS08330
uniprot id: B9L173
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 1 family.
messages: Cell membrane
messages: NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.
messages: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.

309801:TRD RS05380
gene id: 309801:TRD_RS05380
uniprot id: B9L0T5
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
messages: Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.
messages: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

309801:TRD RS10125
gene id: 309801:TRD_RS10125
uniprot id: B9L336
names: Function
names: Similarity
names: Subunit
messages: Belongs to the TrpB family.
messages: Tetramer of two alpha and two beta chains.
messages: The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine.

309801:TRD RS00305
gene id: 309801:TRD_RS00305
uniprot id: B9L283
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the D-alanine--D-alanine ligase family.
messages: Binds 2 magnesium or manganese ions per subunit.
messages: Cell wall formation.
messages: Cytoplasm

309801:TRD RS09110
gene id: 309801:TRD_RS09110
uniprot id: B9L2Q8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS01940
gene id: 309801:TRD_RS01940
uniprot id: B9KY76
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the SelA family.
messages: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
messages: Cytoplasm

309801:TRD RS08655
gene id: 309801:TRD_RS08655
uniprot id: B9L1V3
names: Similarity
messages: Belongs to the YggT family.

309801:TRD RS03330
gene id: 309801:TRD_RS03330
uniprot id: B9KZ15
names: Cofactor
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the class-II aminoacyl-tRNA synthetase family.
messages: Binds 1 zinc ion per subunit.
messages: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
messages: Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.
messages: Cytoplasm

309801:TRD RS05765
gene id: 309801:TRD_RS05765
uniprot id: B9L1H5
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase A chain family.
messages: Cell membrane
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.
messages: Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
messages: Membrane

309801:TRD RS11125
gene id: 309801:TRD_RS11125
uniprot id: B9L3R1
names: Similarity
messages: Belongs to the band 7/mec-2 family. Flotillin subfamily.

309801:TRD RS10575
gene id: 309801:TRD_RS10575
uniprot id: B9L3E2
names: Function
names: Similarity
messages: Belongs to the mandelate racemase/muconate lactonizing enzyme family. MenC type 1 subfamily.
messages: Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 2-succinylbenzoate (OSB).

309801:TRD RS01020
gene id: 309801:TRD_RS01020
uniprot id: B9KXM4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS05240
gene id: 309801:TRD_RS05240
uniprot id: B9L0Q7
names: Similarity
messages: Belongs to the CDP-alcohol phosphatidyltransferase class-I family.

309801:TRD RS00490
gene id: 309801:TRD_RS00490
uniprot id: B9L2C0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the anthranilate synthase component I family.
messages: Heterotetramer consisting of two non-identical subunits: a beta subunit (TrpG) and a large alpha subunit (TrpE).
messages: Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia.

309801:TRD RS00955
gene id: 309801:TRD_RS00955
uniprot id: B9KXL0
names: Similarity
messages: Belongs to the KHG/KDPG aldolase family.

309801:TRD RS04420
gene id: 309801:TRD_RS04420
uniprot id: B9KZW6
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
messages: Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.
messages: Monomer.
messages: Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.

309801:TRD RS13090
gene id: 309801:TRD_RS13090
uniprot id: B9L507
names: Caution
names: Function
names: Similarity
names: Subunit
messages: Belongs to the shikimate dehydrogenase family.
messages: Homodimer.
messages: Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS04370
gene id: 309801:TRD_RS04370
uniprot id: B9KZV6
names: Similarity
messages: Belongs to the universal ribosomal protein uS9 family.

309801:TRD RS03835
gene id: 309801:TRD_RS03835
uniprot id: B9KZC2
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS07290
gene id: 309801:TRD_RS07290
uniprot id: B9L065
names: Similarity
messages: Belongs to the glutamine synthetase family.

309801:TRD RS12390
gene id: 309801:TRD_RS12390
uniprot id: B9L4J3
names: Cofactor
names: Similarity
messages: Belongs to the metallo-dependent hydrolases superfamily. NagA family.
messages: Binds 1 divalent metal cation per subunit.

309801:TRD RS02330
gene id: 309801:TRD_RS02330
uniprot id: B9KYF9
names: Function
names: Similarity
messages: Belongs to the DMRL synthase family.
messages: Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.

309801:TRD RS07540
gene id: 309801:TRD_RS07540
uniprot id: B9L0C0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the helicase family. PriA subfamily.
messages: Component of the primosome.
messages: Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA.

309801:TRD RS04430
gene id: 309801:TRD_RS04430
uniprot id: B9KZW8
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the SecY/SEC61-alpha family.
messages: Cell membrane
messages: Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.
messages: Membrane
messages: The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.

309801:TRD RS00535
gene id: 309801:TRD_RS00535
uniprot id: B9KXC5
names: Similarity
names: Subcellular Location Annotation
messages: Cytoplasm
messages: In the C-terminal section; belongs to the PRA-PH family.
messages: In the N-terminal section; belongs to the PRA-CH family.

309801:TRD RS04930
gene id: 309801:TRD_RS04930
uniprot id: B9L0J6
names: Caution
names: Cofactor
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the class-II aminoacyl-tRNA synthetase family.
messages: Binds 1 zinc ion per subunit.
messages: Cytoplasm
messages: Homodimer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS05095
gene id: 309801:TRD_RS05095
uniprot id: B9L0M7
names: Similarity
messages: Belongs to the aspartate/glutamate racemases family.

309801:TRD RS09785
gene id: 309801:TRD_RS09785
uniprot id: B9L2U8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CRISPR system Cmr5 family.
messages: Cytoplasm

309801:TRD RS10265
gene id: 309801:TRD_RS10265
uniprot id: B9L371
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
messages: Cell membrane
messages: Membrane
messages: Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane.

309801:TRD RS00550
gene id: 309801:TRD_RS00550
uniprot id: B9KXC8
names: Similarity
messages: Belongs to the bacterial ribosomal protein bS16 family.

309801:TRD RS08485
gene id: 309801:TRD_RS08485
uniprot id: B9L1R8
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the GTP-binding SRP family. SRP54 subfamily.
messages: Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.
messages: Cytoplasm
messages: Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.
messages: Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY.

309801:TRD RS02905
gene id: 309801:TRD_RS02905
uniprot id: B9KYT3
names: Cofactor
names: Function
names: Similarity
messages: Belongs to the histidinol dehydrogenase family.
messages: Binds 1 zinc ion per subunit.
messages: Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.

309801:TRD RS06385
gene id: 309801:TRD_RS06385
uniprot id: B9L2F7
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS06795
gene id: 309801:TRD_RS06795
uniprot id: B9L2P4
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS00195
gene id: 309801:TRD_RS00195
uniprot id: B9L259
names: Similarity
messages: Belongs to the enoyl-CoA hydratase/isomerase family.

309801:TRD RS08595
gene id: 309801:TRD_RS08595
uniprot id: B9L1U0
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS10760
gene id: 309801:TRD_RS10760
uniprot id: B9L3I1
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS04600
gene id: 309801:TRD_RS04600
uniprot id: B9L002
names: Activity Regulation
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Allosterically activated by GTP. Inhibited by UTP.
messages: Belongs to the UMP kinase family.
messages: Catalyzes the reversible phosphorylation of UMP to UDP.
messages: Cytoplasm
messages: Homohexamer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

309801:TRD RS04825
gene id: 309801:TRD_RS04825
uniprot id: B9L042
names: Similarity
messages: Belongs to the UPF0102 family.

309801:TRD RS00655
gene id: 309801:TRD_RS00655
uniprot id: B9KXE9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the binding-protein-dependent transport system permease family.
messages: Cell membrane

309801:TRD RS09985
gene id: 309801:TRD_RS09985
uniprot id: B9L2Z8
names: Similarity
messages: Belongs to the proline racemase family.

309801:TRD RS03475
gene id: 309801:TRD_RS03475
uniprot id: B9KZ49
names: Cofactor
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the peptidase M48B family.
messages: Binds 1 zinc ion per subunit.
messages: Cell membrane
messages: Membrane

309801:TRD RS03400
gene id: 309801:TRD_RS03400
uniprot id: B9KZ34
names: Similarity
messages: Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.

309801:TRD RS05520
gene id: 309801:TRD_RS05520
uniprot id: B9L0W3
names: Function
names: Subunit
messages: Catalyzes the synthesis of GMP from XMP.
messages: Homodimer.

309801:TRD RS01505
gene id: 309801:TRD_RS01505
uniprot id: B9KXY0
names: Similarity
messages: Belongs to the extradiol ring-cleavage dioxygenase family.

309801:TRD RS11505
gene id: 309801:TRD_RS11505
uniprot id: B9L3Z6
names: Subcellular Location Annotation
messages: Membrane

309801:TRD RS12730
gene id: 309801:TRD_RS12730
uniprot id: B9L4S3
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the Lgt family.
messages: Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
messages: Cell membrane

309801:TRD RS04475
gene id: 309801:TRD_RS04475
uniprot id: B9KZX7
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL14 family.
messages: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
messages: Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.

309801:TRD RS02930
gene id: 309801:TRD_RS02930
uniprot id: B9KYT8
names: Activity Regulation
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the enolase family.
messages: Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.
messages: Cell surface
messages: Cytoplasm
messages: Secreted
messages: The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein.

309801:TRD RS13020
gene id: 309801:TRD_RS13020
uniprot id: B9L4Z0
names: Similarity
messages: Belongs to the HAD-like hydrolase superfamily. S-2-haloalkanoic acid dehalogenase family.

309801:TRD RS03280
gene id: 309801:TRD_RS03280
uniprot id: B9KZ05
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the beta sliding clamp family.
messages: Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.
messages: Cytoplasm
messages: Forms a ring-shaped head-to-tail homodimer around DNA.

309801:TRD RS03245
gene id: 309801:TRD_RS03245
uniprot id: B9KYZ8
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the cytochrome c oxidase subunit 3 family.
messages: Cell membrane
messages: Membrane

309801:TRD RS09870
gene id: 309801:TRD_RS09870
uniprot id: B9L2W8
names: Similarity
messages: Belongs to the sigma-70 factor family. ECF subfamily.

309801:TRD RS11220
gene id: 309801:TRD_RS11220
uniprot id: B9L3T4
names: Function
names: Similarity
messages: Belongs to the DNA mismatch repair MutL/HexB family.
messages: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.

309801:TRD RS00085
gene id: 309801:TRD_RS00085
uniprot id: B9L1B7
names: Function
messages: CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).

309801:TRD RS03405
gene id: 309801:TRD_RS03405
uniprot id: B9KZ35
names: Similarity
messages: Belongs to the SAICAR synthetase family.