1690221:DDQ41 RS08275
gene id: 1690221:DDQ41_RS08275
uniprot id: A0A2S1Z8Y8
names: Similarity
messages: Belongs to the bacterial histone-like protein family.

1690221:DDQ41 RS19000
gene id: 1690221:DDQ41_RS19000
uniprot id: A0A2S1Z2X2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL15 family.
messages: Binds to the 23S rRNA.
messages: Part of the 50S ribosomal subunit.

1690221:DDQ41 RS18895
gene id: 1690221:DDQ41_RS18895
uniprot id: A0A2S1Z2V2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS10 family.
messages: Involved in the binding of tRNA to the ribosomes.
messages: Part of the 30S ribosomal subunit.

1690221:DDQ41 RS18990
gene id: 1690221:DDQ41_RS18990
uniprot id: A0A2S1Z2U3
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS5 family.
messages: Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.
messages: Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.
messages: The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.
messages: With S4 and S12 plays an important role in translational accuracy.

1690221:DDQ41 RS20655
gene id: 1690221:DDQ41_RS20655
uniprot id: A0A2S1Z3M5
names: Similarity
messages: Belongs to the GPN-loop GTPase family.

1690221:DDQ41 RS06735
gene id: 1690221:DDQ41_RS06735
uniprot id: A0A2S1YXC1
names: Function
names: Similarity
names: Subunit
messages: ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
messages: Belongs to the ClpX chaperone family.
messages: Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.

1690221:DDQ41 RS01200
gene id: 1690221:DDQ41_RS01200
uniprot id: A0A2S1YUS9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the SsgA family.
messages: Cell septum

1690221:DDQ41 RS18955
gene id: 1690221:DDQ41_RS18955
uniprot id: A0A2S1Z2L6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL24 family.
messages: One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
messages: One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
messages: Part of the 50S ribosomal subunit.

1690221:DDQ41 RS19855
gene id: 1690221:DDQ41_RS19855
uniprot id: A0A2S1Z360
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
messages: Binds 1 zinc ion per subunit.
messages: Binds the 23S rRNA.
messages: Part of the 50S ribosomal subunit.

1690221:DDQ41 RS08665
gene id: 1690221:DDQ41_RS08665
uniprot id: A0A2S1YXZ7
names: Similarity
messages: Belongs to the UPF0434 family.

1690221:DDQ41 RS11445
gene id: 1690221:DDQ41_RS11445
uniprot id: A0A2S1YZ86
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase subunit omega family.
messages: Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
messages: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

1690221:DDQ41 RS08295
gene id: 1690221:DDQ41_RS08295
uniprot id: A0A2S1YY36
names: Similarity
messages: Belongs to the sigma-70 factor family. ECF subfamily.

1690221:DDQ41 RS15800
gene id: 1690221:DDQ41_RS15800
uniprot id: A0A2S1Z1F7
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL34 family.

1690221:DDQ41 RS11180
gene id: 1690221:DDQ41_RS11180
uniprot id: A0A2S1YZ46
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase-binding protein RbpA family.
messages: Bind 1 Zn(2+) per subunit.
messages: Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
messages: Forms a complex with the RNAP catalytic core and with free principal sigma factors.

1690221:DDQ41 RS23755
gene id: 1690221:DDQ41_RS23755
uniprot id: A0A2S1ZA05
names: Activity Regulation
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Allosterically activated by GTP. Inhibited by UTP.
messages: Belongs to the UMP kinase family.
messages: Catalyzes the reversible phosphorylation of UMP to UDP.
messages: Cytoplasm
messages: Homohexamer.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

1690221:DDQ41 RS23200
gene id: 1690221:DDQ41_RS23200
uniprot id: A0A2S1Z4R7
names: Cofactor
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.
messages: Belongs to the WhiB family.
messages: Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.
messages: Cytoplasm
messages: The Fe-S cluster can be nitrosylated by nitric oxide (NO).
messages: Upon Fe-S cluster removal intramolecular disulfide bonds are formed.

1690221:DDQ41 RS18865
gene id: 1690221:DDQ41_RS18865
uniprot id: A0A2S1Z2P9
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS7 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.
messages: Part of the 30S ribosomal subunit. Contacts proteins S9 and S11.

1690221:DDQ41 RS08695
gene id: 1690221:DDQ41_RS08695
uniprot id: A0A2S1YY35
names: Cofactor
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.
messages: Belongs to the WhiB family.
messages: Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.
messages: Cytoplasm
messages: The Fe-S cluster can be nitrosylated by nitric oxide (NO).
messages: Upon Fe-S cluster removal intramolecular disulfide bonds are formed.

1690221:DDQ41 RS19035
gene id: 1690221:DDQ41_RS19035
uniprot id: A0A2S1Z2R6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS11 family.
messages: Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
messages: Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.

1690221:DDQ41 RS05660
gene id: 1690221:DDQ41_RS05660
uniprot id: A0A388SYF0
names: Caution
messages: The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

1690221:DDQ41 RS01510
gene id: 1690221:DDQ41_RS01510
uniprot id: A0A2S1YVQ0
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL20 family.
messages: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

1690221:DDQ41 RS18935
gene id: 1690221:DDQ41_RS18935
uniprot id: A0A2S1Z2T3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL16 family.
messages: Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.
messages: Part of the 50S ribosomal subunit.

1690221:DDQ41 RS22640
gene id: 1690221:DDQ41_RS22640
uniprot id: A0A2S1Z5V8
names: Cofactor
names: Function
messages: Binds 1 [3Fe-4S] cluster.
messages: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

1690221:DDQ41 RS06585
gene id: 1690221:DDQ41_RS06585
uniprot id: A0A2S1YWZ6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bL21 family.
messages: Part of the 50S ribosomal subunit. Contacts protein L20.
messages: This protein binds to 23S rRNA in the presence of protein L20.

1690221:DDQ41 RS20635
gene id: 1690221:DDQ41_RS20635
uniprot id: A0A2S1Z3H6
names: Similarity
messages: Belongs to the GPN-loop GTPase family.

1690221:DDQ41 RS23665
gene id: 1690221:DDQ41_RS23665
uniprot id: A0A2S1Z6C1
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: A probable RNA-binding protein.
messages: Belongs to the KhpA RNA-binding protein family.
messages: Cytoplasm

1690221:DDQ41 RS19040
gene id: 1690221:DDQ41_RS19040
uniprot id: A0A2S1Z2U7
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase alpha chain family.
messages: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
messages: Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
messages: The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.

1690221:DDQ41 RS17835
gene id: 1690221:DDQ41_RS17835
uniprot id: A0A2S1Z3J1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PPase family.
messages: Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
messages: Cytoplasm
messages: Homohexamer.

1690221:DDQ41 RS20830
gene id: 1690221:DDQ41_RS20830
uniprot id: A0A2S1Z4Z9
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL32 family.

1690221:DDQ41 RS02355
gene id: 1690221:DDQ41_RS02355
uniprot id: A0A2S1YVD3
names: Function
names: Similarity
messages: Belongs to the WhiA family.
messages: Involved in cell division and chromosome segregation.

1690221:DDQ41 RS18925
gene id: 1690221:DDQ41_RS18925
uniprot id: A0A2S1Z427
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL22 family.
messages: Part of the 50S ribosomal subunit.
messages: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
messages: This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.

1690221:DDQ41 RS02705
gene id: 1690221:DDQ41_RS02705
uniprot id: A0A2S1YVI3
names: Subcellular Location Annotation
messages: Cytoplasm

1690221:DDQ41 RS18995
gene id: 1690221:DDQ41_RS18995
uniprot id: A0A2S1Z2R3
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL30 family.
messages: Part of the 50S ribosomal subunit.

1690221:DDQ41 RS15665
gene id: 1690221:DDQ41_RS15665
uniprot id: A0A2S1Z189
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bS18 family.
messages: Binds as a heterodimer with protein bS6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein bS6.

1690221:DDQ41 RS20795
gene id: 1690221:DDQ41_RS20795
uniprot id: A0A2S1Z3N0
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL28 family.

1690221:DDQ41 RS18800
gene id: 1690221:DDQ41_RS18800
uniprot id: A0A2S1Z2L1
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL10 family.
messages: Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.
messages: Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.

1690221:DDQ41 RS15675
gene id: 1690221:DDQ41_RS15675
uniprot id: A0A2S1Z2G3
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bS6 family.
messages: Binds together with bS18 to 16S ribosomal RNA.

1690221:DDQ41 RS07865
gene id: 1690221:DDQ41_RS07865
uniprot id: A0A2S1YXL1
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.
messages: Cell membrane
messages: Membrane

1690221:DDQ41 RS18915
gene id: 1690221:DDQ41_RS18915
uniprot id: A0A2S1Z2Q8
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL2 family.
messages: One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.
messages: Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome.

1690221:DDQ41 RS18455
gene id: 1690221:DDQ41_RS18455
uniprot id: A0A2S1Z2F0
names: Subcellular Location Annotation
messages: Cytoplasm

1690221:DDQ41 RS23730
gene id: 1690221:DDQ41_RS23730
uniprot id: A0A2S1Z516
names: Function
names: Similarity
messages: Belongs to the sigma-70 factor family.
messages: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.

1690221:DDQ41 RS24680
gene id: 1690221:DDQ41_RS24680
uniprot id: A0A2S1Z5C7
names: Caution
names: Function
names: Similarity
messages: Belongs to the dUTPase family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.

1690221:DDQ41 RS18860
gene id: 1690221:DDQ41_RS18860
uniprot id: A0A2S1Z2N4
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS12 family.
messages: Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.
messages: With S4 and S5 plays an important role in translational accuracy.

1690221:DDQ41 RS19240
gene id: 1690221:DDQ41_RS19240
uniprot id: A0A2S1Z307
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the GroES chaperonin family.
messages: Cytoplasm
messages: Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.
messages: Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel.

1690221:DDQ41 RS18740
gene id: 1690221:DDQ41_RS18740
uniprot id: A0A388SZJ6
names: Caution
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL33 family.
messages: The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

1690221:DDQ41 RS17550
gene id: 1690221:DDQ41_RS17550
uniprot id: A0A2S1Z291
names: Similarity
messages: Belongs to the anti-sigma-factor antagonist family.

1690221:DDQ41 RS19025
gene id: 1690221:DDQ41_RS19025
uniprot id: A0A2S1Z2Q0
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL36 family.

1690221:DDQ41 RS18950
gene id: 1690221:DDQ41_RS18950
uniprot id: A0A2S1Z2Z8
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL14 family.
messages: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
messages: Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.

1690221:DDQ41 RS13865
gene id: 1690221:DDQ41_RS13865
uniprot id: A0A2S1Z0F9
names: Subcellular Location Annotation
messages: Cytoplasm

1690221:DDQ41 RS11010
gene id: 1690221:DDQ41_RS11010
uniprot id: A0A2S1YZ16
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the sbp family.
messages: Cell membrane

1690221:DDQ41 RS18965
gene id: 1690221:DDQ41_RS18965
uniprot id: A0A2S1Z2R8
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.
messages: Binds 1 zinc ion per subunit.
messages: Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
messages: Part of the 30S ribosomal subunit. Contacts proteins S3 and S10.

1690221:DDQ41 RS29875
gene id: 1690221:DDQ41_RS29875
uniprot id: A0A2S1Z7T3
names: Subcellular Location Annotation
messages: Membrane

1690221:DDQ41 RS23760
gene id: 1690221:DDQ41_RS23760
uniprot id: A0A2S1Z9R3
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the RRF family.
messages: Cytoplasm
messages: Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

1690221:DDQ41 RS18975
gene id: 1690221:DDQ41_RS18975
uniprot id: A0A2S1Z2P0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS8 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.

1690221:DDQ41 RS01515
gene id: 1690221:DDQ41_RS01515
uniprot id: A0A2S1YUN6
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL35 family.

1690221:DDQ41 RS19020
gene id: 1690221:DDQ41_RS19020
uniprot id: A0A2S1Z2T1
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the IF-1 family.
messages: Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.
messages: Cytoplasm
messages: One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.

1690221:DDQ41 RS18505
gene id: 1690221:DDQ41_RS18505
uniprot id: A0A2S1Z2I8
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 3 family.
messages: Cell membrane
messages: NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.
messages: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.

1690221:DDQ41 RS05740
gene id: 1690221:DDQ41_RS05740
uniprot id: A0A2S1YWQ2
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.
messages: 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.
messages: Belongs to the acyl carrier protein (ACP) family.
messages: Carrier of the growing fatty acid chain in fatty acid biosynthesis.
messages: Cytoplasm