13451:BOP53 gp062
gene id: 13451:BOP53_gp062
uniprot id: A0A1I9RG38
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 3 family.
messages: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
messages: Mitochondrion membrane
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp002
gene id: 13451:BOP53_gp002
uniprot id: A0A1I9RG91
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL2 family.
messages: Part of the 50S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp067
gene id: 13451:BOP53_gp067
uniprot id: A0A1I9RG33
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsaA/PsaB family.
messages: Membrane
messages: PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin.
messages: The PsaA/B heterodimer binds the P700 chlorophyll special pair and subsequent electron acceptors. PSI consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The eukaryotic PSI reaction center is composed of at least 11 subunits.
messages: chloroplast thylakoid membrane

13451:BOP53 gp003
gene id: 13451:BOP53_gp003
uniprot id: A0A1I9RG90
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL23 family.
messages: Binds to 23S rRNA.
messages: Part of the 50S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp030
gene id: 13451:BOP53_gp030
uniprot id: A0A1I9RG68
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL22 family.
messages: Part of the 50S ribosomal subunit.
messages: The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
messages: This protein binds specifically to 23S rRNA.
messages: chloroplast

13451:BOP53 gp007
gene id: 13451:BOP53_gp007
uniprot id: A0A1I9RG73
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS7 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp065
gene id: 13451:BOP53_gp065
uniprot id: A0A1I9RG35
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS4 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.
messages: With S5 and S12 plays an important role in translational accuracy.
messages: chloroplast

13451:BOP53 gp079
gene id: 13451:BOP53_gp079
uniprot id: A0A1I9RG22
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase alpha/beta chains family.
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has four main subunits: a, b, b' and c.
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.
messages: Membrane
messages: Mitochondrion inner membrane
messages: Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
messages: chloroplast thylakoid membrane

13451:BOP53 gp046
gene id: 13451:BOP53_gp046
uniprot id: A0A1I9RG54
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the bacterial ribosomal protein bL20 family.
messages: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
messages: chloroplast

13451:BOP53 gp048
gene id: 13451:BOP53_gp048
uniprot id: A0A1I9RG52
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the bacterial ribosomal protein bL33 family.
messages: chloroplast

13451:BOP53 gp066
gene id: 13451:BOP53_gp066
uniprot id: A0A1I9RG34
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the Ycf3 family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Seems to be required for the assembly of the photosystem I complex.
messages: chloroplast thylakoid membrane

13451:BOP53 gp041
gene id: 13451:BOP53_gp041
uniprot id: A0A1I9RG57
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the PsbT family.
messages: Seems to play a role in the dimerization of PSII.
messages: chloroplast thylakoid membrane

13451:BOP53 gp029
gene id: 13451:BOP53_gp029
uniprot id: A0A1I9RG92
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the universal ribosomal protein uS19 family.
messages: Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
messages: chloroplast

13451:BOP53 gp032
gene id: 13451:BOP53_gp032
uniprot id: A0A1I9RG66
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL16 family.
messages: Part of the 50S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp077
gene id: 13451:BOP53_gp077
uniprot id: A0A1I9RG23
names: Caution
names: Function
names: Miscellaneous
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase C chain family.
messages: F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.
messages: F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has four main subunits: a(1), b(1), b'(1) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta, b and b' chains.
messages: In plastids the F-type ATPase is also known as CF(1)CF(0).
messages: Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Membrane
messages: This protein is one of the chains of the nonenzymatic membrane component (F0) of mitochondrial ATPase.
messages: chloroplast thylakoid membrane

13451:BOP53 gp015
gene id: 13451:BOP53_gp015
uniprot id: A0A1I9RG80
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 4L family.
messages: Membrane
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp049
gene id: 13451:BOP53_gp049
uniprot id: A0A1I9RG51
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the PsaJ family.
messages: May help in the organization of the PsaE and PsaF subunits.
messages: Membrane
messages: chloroplast thylakoid membrane

13451:BOP53 gp034
gene id: 13451:BOP53_gp034
uniprot id: A0A1I9RG64
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS8 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp060
gene id: 13451:BOP53_gp060
uniprot id: A0A1I9RG40
names: Cofactor
names: Function
names: Miscellaneous
names: PTM
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RuBisCO large chain family. Type I subfamily.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Heterohexadecamer of 8 large chains and 8 small chains; disulfide-linked. The disulfide link is formed within the large subunit homodimers.
messages: RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
messages: The basic functional RuBisCO is composed of a large chain homodimer in a 'head-to-tail' conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric 'cap' on each end of the 'barrel'.
messages: The disulfide bond which can form in the large chain dimeric partners within the hexadecamer appears to be associated with oxidative stress and protein turnover.
messages: chloroplast

13451:BOP53 gp051
gene id: 13451:BOP53_gp051
uniprot id: A0A1I9RG49
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PetL family.
messages: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetL is important for photoautotrophic growth as well as for electron transfer efficiency and stability of the cytochrome b6-f complex.
messages: Membrane
messages: The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.
messages: chloroplast thylakoid membrane

13451:BOP53 gp012
gene id: 13451:BOP53_gp012
uniprot id: A0A1I9RG83
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 1 family.
messages: Cell membrane
messages: Membrane
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp050
gene id: 13451:BOP53_gp050
uniprot id: A0A1I9RG50
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PetG family.
messages: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. PetG is required for either the stability or assembly of the cytochrome b6-f complex.
messages: Membrane
messages: The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.
messages: chloroplast thylakoid membrane

13451:BOP53 gp080
gene id: 13451:BOP53_gp080
uniprot id: A0A1I9RG21
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbI family.
messages: Membrane
messages: One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp026
gene id: 13451:BOP53_gp026
uniprot id: A0A1I9RG72
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the Ycf2 family.
messages: Probable ATPase of unknown function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis.
messages: chloroplast stroma

13451:BOP53 gp053
gene id: 13451:BOP53_gp053
uniprot id: A0A1I9RG47
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbE/PsbF family.
messages: Heterodimer of an alpha subunit and a beta subunit. PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: Membrane
messages: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
messages: With its partner (PsbE) binds heme. PSII binds additional chlorophylls, carotenoids and specific lipids.
messages: chloroplast thylakoid membrane

13451:BOP53 gp006
gene id: 13451:BOP53_gp006
uniprot id: A0A1I9RG88
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 2 family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Membrane
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp011
gene id: 13451:BOP53_gp011
uniprot id: A0A1I9RG84
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I 49 kDa subunit family.
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp075
gene id: 13451:BOP53_gp075
uniprot id: A0A1I9RG25
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the universal ribosomal protein uS2 family.
messages: chloroplast

13451:BOP53 gp074
gene id: 13451:BOP53_gp074
uniprot id: A0A1I9RG26
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.
messages: Binds 1 Mg(2+) ion per subunit.
messages: Binds 1 Zn(2+) ion per subunit.
messages: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
messages: In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
messages: chloroplast

13451:BOP53 gp082
gene id: 13451:BOP53_gp082
uniprot id: A0A1I9RG19
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the bacterial ribosomal protein bS16 family.
messages: chloroplast

13451:BOP53 gp063
gene id: 13451:BOP53_gp063
uniprot id: A0A1I9RG37
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I 20 kDa subunit family.
messages: Binds 1 [4Fe-4S] cluster.
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp023
gene id: 13451:BOP53_gp023
uniprot id: A0A1I9RG73
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS7 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp081
gene id: 13451:BOP53_gp081
uniprot id: A0A1I9RG20
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbK family.
messages: Membrane
messages: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp071
gene id: 13451:BOP53_gp071
uniprot id: A0A1I9RG29
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbB/PsbC family. PsbC subfamily.
messages: Membrane
messages: One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp054
gene id: 13451:BOP53_gp054
uniprot id: A0A1I9RG46
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbL family.
messages: Membrane
messages: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface and is required for correct PSII assembly and/or dimerization.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp070
gene id: 13451:BOP53_gp070
uniprot id: A0A1I9RG30
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the PsbZ family.
messages: Controls the interaction of photosystem II (PSII) cores with the light-harvesting antenna.
messages: chloroplast thylakoid membrane

13451:BOP53 gp061
gene id: 13451:BOP53_gp061
uniprot id: A0A1I9RG39
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase epsilon chain family.
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.
messages: Produces ATP from ADP in the presence of a proton gradient across the membrane.
messages: chloroplast thylakoid membrane

13451:BOP53 gp072
gene id: 13451:BOP53_gp072
uniprot id: A0A1I9RG28
names: Function
names: Miscellaneous
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: 2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.
messages: Belongs to the reaction center PufL/M/PsbA/D family.
messages: Membrane
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbD) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex.
messages: chloroplast thylakoid membrane

13451:BOP53 gp027
gene id: 13451:BOP53_gp027
uniprot id: A0A1I9RG90
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL23 family.
messages: Binds to 23S rRNA.
messages: Part of the 50S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp016
gene id: 13451:BOP53_gp016
uniprot id: A0A1I9RG79
names: Cofactor
names: Function
names: Subcellular Location Annotation
names: Subunit
messages: Apoprotein for the two 4Fe-4S centers FA and FB of photosystem I (PSI); essential for photochemical activity. FB is the terminal electron acceptor of PSI, donating electrons to ferredoxin. The C-terminus interacts with PsaA/B/D and helps assemble the protein into the PSI complex. Required for binding of PsaD and PsaE to PSI. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn.
messages: Binds 2 [4Fe-4S] clusters. Cluster 2 is most probably the spectroscopically characterized electron acceptor FA and cluster 1 is most probably FB.
messages: The eukaryotic PSI reaction center is composed of at least 11 subunits.
messages: chloroplast thylakoid membrane

13451:BOP53 gp073
gene id: 13451:BOP53_gp073
uniprot id: A0A1I9RG27
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PetN family.
messages: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
messages: Membrane
messages: The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.
messages: chloroplast thylakoid membrane

13451:BOP53 gp014
gene id: 13451:BOP53_gp014
uniprot id: A0A1I9RG81
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I subunit 6 family.
messages: Membrane
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp037
gene id: 13451:BOP53_gp037
uniprot id: A0A1I9RG61
names: Domain
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the RNA polymerase alpha chain family.
messages: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
messages: In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
messages: The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.
messages: chloroplast

13451:BOP53 gp001
gene id: 13451:BOP53_gp001
uniprot id: A0A1I9RG92
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the universal ribosomal protein uS19 family.
messages: Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
messages: chloroplast

13451:BOP53 gp059
gene id: 13451:BOP53_gp059
uniprot id: A0A1I9RG41
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the PsaI family.
messages: May help in the organization of the PsaL subunit.
messages: Membrane
messages: chloroplast thylakoid membrane

13451:BOP53 gp028
gene id: 13451:BOP53_gp028
uniprot id: A0A1I9RG70
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL2 family.
messages: Part of the 50S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp052
gene id: 13451:BOP53_gp052
uniprot id: A0A1I9RG48
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbE/PsbF family.
messages: Heterodimer of an alpha subunit and a beta subunit. PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: Membrane
messages: This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
messages: With its partner (PsbF) binds heme. PSII binds additional chlorophylls, carotenoids and specific lipids.
messages: chloroplast thylakoid membrane

13451:BOP53 gp056
gene id: 13451:BOP53_gp056
uniprot id: A0A1I9RG44
names: Cofactor
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the cytochrome f family.
messages: Binds 1 heme group covalently.
messages: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
messages: Membrane
messages: The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.
messages: chloroplast thylakoid membrane

13451:BOP53 gp045
gene id: 13451:BOP53_gp045
uniprot id: A0A1I9RG93
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS12 family.
messages: Part of the 30S ribosomal subunit.
messages: With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
messages: chloroplast

13451:BOP53 gp042
gene id: 13451:BOP53_gp042
uniprot id: A0A1I9RG56
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbB/PsbC family. PsbB subfamily.
messages: Membrane
messages: One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp057
gene id: 13451:BOP53_gp057
uniprot id: A0A1I9RG43
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the CemA family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: May be involved in proton extrusion. Indirectly promotes efficient inorganic carbon uptake into chloroplasts.
messages: Membrane
messages: chloroplast inner membrane

13451:BOP53 gp031
gene id: 13451:BOP53_gp031
uniprot id: A0A1I9RG67
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS3 family.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp044
gene id: 13451:BOP53_gp044
uniprot id: A0A1I9RG93
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS12 family.
messages: Part of the 30S ribosomal subunit.
messages: With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
messages: chloroplast

13451:BOP53 gp036
gene id: 13451:BOP53_gp036
uniprot id: A0A1I9RG62
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS11 family.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp004
gene id: 13451:BOP53_gp004
uniprot id: A0A1I9RG72
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the Ycf2 family.
messages: Probable ATPase of unknown function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis.
messages: chloroplast stroma

13451:BOP53 gp040
gene id: 13451:BOP53_gp040
uniprot id: A0A1I9RG58
names: Caution
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the PsbN family.
messages: May play a role in photosystem I and II biogenesis.
messages: Membrane
messages: Originally thought to be a component of PSII; based on experiments in Synechocystis, N.tabacum and barley, and its absence from PSII in T.elongatus and T.vulcanus, this is probably not true.
messages: chloroplast thylakoid membrane

13451:BOP53 gp010
gene id: 13451:BOP53_gp010
uniprot id: A0A1I9RG85
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS15 family.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp069
gene id: 13451:BOP53_gp069
uniprot id: A0A1I9RG31
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uS14 family.
messages: Binds 16S rRNA, required for the assembly of 30S particles.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp018
gene id: 13451:BOP53_gp018
uniprot id: A0A1I9RG77
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the CcmF/CycK/Ccl1/NrfE/CcsA family.
messages: May interact with Ccs1.
messages: Membrane
messages: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
messages: chloroplast thylakoid membrane

13451:BOP53 gp038
gene id: 13451:BOP53_gp038
uniprot id: A0A1I9RG60
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the cytochrome b family. PetD subfamily.
messages: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
messages: Membrane
messages: The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer.
messages: chloroplast thylakoid membrane

13451:BOP53 gp076
gene id: 13451:BOP53_gp076
uniprot id: A0A1I9RG24
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the ATPase A chain family.
messages: F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has four main subunits: a, b, b' and c.
messages: Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
messages: Membrane
messages: chloroplast thylakoid membrane

13451:BOP53 gp068
gene id: 13451:BOP53_gp068
uniprot id: A0A1I9RG32
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsaA/PsaB family.
messages: Membrane
messages: PsaA and PsaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which transfers an electron from the donor P700 chlorophyll pair to the spectroscopically characterized acceptors A0, A1, FX, FA and FB in turn. Oxidized P700 is reduced on the lumenal side of the thylakoid membrane by plastocyanin.
messages: The PsaA/B heterodimer binds the P700 chlorophyll special pair and subsequent electron acceptors. PSI consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The eukaryotic PSI reaction center is composed of at least 11 subunits.
messages: chloroplast thylakoid membrane

13451:BOP53 gp055
gene id: 13451:BOP53_gp055
uniprot id: A0A1I9RG45
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbJ family.
messages: One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp033
gene id: 13451:BOP53_gp033
uniprot id: A0A1I9RG65
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the universal ribosomal protein uL14 family.
messages: Binds to 23S rRNA.
messages: Part of the 50S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp084
gene id: 13451:BOP53_gp084
uniprot id: A0A1I9RG17
names: Function
names: Miscellaneous
names: PTM
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: 2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.
messages: Belongs to the reaction center PufL/M/PsbA/D family.
messages: C-terminally processed by CtpA; processing is essential to allow assembly of the oxygen-evolving complex and thus photosynthetic growth.
messages: Herbicides such as atrazine, BNT, diuron or ioxynil bind in the Q(B) binding site and block subsequent electron transfer.
messages: Membrane
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbD) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors.
messages: Tyr-161 forms a radical intermediate that is referred to as redox-active TyrZ, YZ or Y-Z.
messages: chloroplast thylakoid membrane

13451:BOP53 gp017
gene id: 13451:BOP53_gp017
uniprot id: A0A1I9RG78
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the complex I subunit 4 family.
messages: Membrane

13451:BOP53 gp039
gene id: 13451:BOP53_gp039
uniprot id: A0A1I9RG59
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the PsbH family.
messages: Membrane
messages: One of the components of the core complex of photosystem II (PSII), required for its stability and/or assembly. PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.
messages: PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, numerous small proteins, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.
messages: chloroplast thylakoid membrane

13451:BOP53 gp064
gene id: 13451:BOP53_gp064
uniprot id: A0A1I9RG36
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the complex I 30 kDa subunit family.
messages: Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
messages: Mitochondrion inner membrane
messages: NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus.
messages: NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
messages: chloroplast thylakoid membrane

13451:BOP53 gp047
gene id: 13451:BOP53_gp047
uniprot id: A0A1I9RG53
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the bacterial ribosomal protein bS18 family.
messages: Part of the 30S ribosomal subunit.
messages: chloroplast

13451:BOP53 gp058
gene id: 13451:BOP53_gp058
uniprot id: A0A1I9RG42
names: Function
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the Ycf4 family.
messages: Membrane
messages: Seems to be required for the assembly of the photosystem I complex.
messages: chloroplast thylakoid membrane