http://togogenome.org/gene/521674:PLIM_RS22070 ^@ http://purl.uniprot.org/uniprot/D5SMD4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DnaA family.|||Cytoplasm|||Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. http://togogenome.org/gene/521674:PLIM_RS02870 ^@ http://purl.uniprot.org/uniprot/D5SQD3 ^@ Similarity ^@ Belongs to the AAA ATPase family. RarA/MGS1/WRNIP1 subfamily. http://togogenome.org/gene/521674:PLIM_RS11385 ^@ http://purl.uniprot.org/uniprot/D5SMY3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS04045 ^@ http://purl.uniprot.org/uniprot/D5SRS5 ^@ Function|||Similarity ^@ Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.|||Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). http://togogenome.org/gene/521674:PLIM_RS02345 ^@ http://purl.uniprot.org/uniprot/D5SPR6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS10410 ^@ http://purl.uniprot.org/uniprot/D5SYR1 ^@ Similarity ^@ Belongs to the peptidase S1C family. http://togogenome.org/gene/521674:PLIM_RS18775 ^@ http://purl.uniprot.org/uniprot/D5SVV4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS16470 ^@ http://purl.uniprot.org/uniprot/D5STI7 ^@ Cofactor|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the HMBS family.|||Binds 1 dipyrromethane group covalently.|||Monomer.|||Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.|||The porphobilinogen subunits are added to the dipyrromethane group. http://togogenome.org/gene/521674:PLIM_RS15295 ^@ http://purl.uniprot.org/uniprot/D5SS73 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS06060 ^@ http://purl.uniprot.org/uniprot/D5SU24 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/521674:PLIM_RS07360 ^@ http://purl.uniprot.org/uniprot/D5SVI7 ^@ Domain|||Similarity ^@ Belongs to the PurH family.|||The IMP cyclohydrolase activity resides in the N-terminal region. http://togogenome.org/gene/521674:PLIM_RS18020 ^@ http://purl.uniprot.org/uniprot/D5SV27 ^@ Similarity ^@ Belongs to the histone deacetylase family. http://togogenome.org/gene/521674:PLIM_RS04400 ^@ http://purl.uniprot.org/uniprot/D5SSD4 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 3 Mg(2+) ions per subunit.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS06450 ^@ http://purl.uniprot.org/uniprot/D5SUN0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the major facilitator superfamily. Proton-dependent oligopeptide transporter (POT/PTR) (TC 2.A.17) family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS12645 ^@ http://purl.uniprot.org/uniprot/D5SPD7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the GcvT family.|||The glycine cleavage system catalyzes the degradation of glycine.|||The glycine cleavage system is composed of four proteins: P, T, L and H. http://togogenome.org/gene/521674:PLIM_RS21170 ^@ http://purl.uniprot.org/uniprot/D5SZ28 ^@ Function|||PTM|||Similarity ^@ Acetylated. Deacetylation by the SIR2-homolog deacetylase activates the enzyme.|||Belongs to the ATP-dependent AMP-binding enzyme family.|||Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. http://togogenome.org/gene/521674:PLIM_RS06035 ^@ http://purl.uniprot.org/uniprot/D5SU18 ^@ Function|||Subcellular Location Annotation ^@ Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.|||Bacterial flagellum basal body http://togogenome.org/gene/521674:PLIM_RS07250 ^@ http://purl.uniprot.org/uniprot/D5SVG6 ^@ Similarity ^@ Belongs to the peptidase S49 family. http://togogenome.org/gene/521674:PLIM_RS07305 ^@ http://purl.uniprot.org/uniprot/D5SVH7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS06815 ^@ http://purl.uniprot.org/uniprot/D5SV84 ^@ Similarity ^@ Belongs to the ComB family. http://togogenome.org/gene/521674:PLIM_RS13670 ^@ http://purl.uniprot.org/uniprot/D5SQM0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.|||Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS15000 ^@ http://purl.uniprot.org/uniprot/D5SS17 ^@ Similarity ^@ Belongs to the peptidase S51 family. http://togogenome.org/gene/521674:PLIM_RS12705 ^@ http://purl.uniprot.org/uniprot/D5SPE9 ^@ Domain|||Function|||Similarity ^@ Belongs to the vitamin-B12 dependent methionine synthase family.|||Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.|||Modular enzyme with four functionally distinct domains. The isolated Hcy-binding domain catalyzes methyl transfer from free methylcobalamin to homocysteine. The Hcy-binding domain in association with the pterin-binding domain catalyzes the methylation of cob(I)alamin by methyltetrahydrofolate and the methylation of homocysteine. The B12-binding domain binds the cofactor. The AdoMet activation domain binds S-adenosyl-L-methionine. Under aerobic conditions cob(I)alamin can be converted to inactive cob(II)alamin. Reductive methylation by S-adenosyl-L-methionine and flavodoxin regenerates methylcobalamin. http://togogenome.org/gene/521674:PLIM_RS01630 ^@ http://purl.uniprot.org/uniprot/D5SP12 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS05840 ^@ http://purl.uniprot.org/uniprot/D5STY0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS06365 ^@ http://purl.uniprot.org/uniprot/D5SUL3 ^@ Similarity ^@ Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. http://togogenome.org/gene/521674:PLIM_RS00550 ^@ http://purl.uniprot.org/uniprot/D5SN32 ^@ Similarity ^@ Belongs to the type II topoisomerase GyrA/ParC subunit family. http://togogenome.org/gene/521674:PLIM_RS17555 ^@ http://purl.uniprot.org/uniprot/D5SUH3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the imidazoleglycerol-phosphate dehydratase family.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS16020 ^@ http://purl.uniprot.org/uniprot/D5SSY4 ^@ Function|||Similarity ^@ Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.|||Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition. http://togogenome.org/gene/521674:PLIM_RS22140 ^@ http://purl.uniprot.org/uniprot/D5SN28 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the YqgF HJR family.|||Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS05745 ^@ http://purl.uniprot.org/uniprot/D5STV9 ^@ Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. SDR39U1 subfamily. http://togogenome.org/gene/521674:PLIM_RS17395 ^@ http://purl.uniprot.org/uniprot/D5SUE5 ^@ Cofactor|||Similarity ^@ Belongs to the RtcB family.|||Binds 2 manganese ions per subunit. http://togogenome.org/gene/521674:PLIM_RS00320 ^@ http://purl.uniprot.org/uniprot/D5SMJ5 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.|||Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.|||Cytoplasm|||Homodimer or homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Non-allosteric. http://togogenome.org/gene/521674:PLIM_RS13340 ^@ http://purl.uniprot.org/uniprot/D5SQ44 ^@ Function|||Similarity|||Subunit ^@ Belongs to the GcvP family. N-terminal subunit subfamily.|||The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits. http://togogenome.org/gene/521674:PLIM_RS22095 ^@ http://purl.uniprot.org/uniprot/D5SMF6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS17560 ^@ http://purl.uniprot.org/uniprot/D5SUH4 ^@ Similarity|||Subunit ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS09980 ^@ http://purl.uniprot.org/uniprot/D5SXR8 ^@ Function|||Similarity ^@ Belongs to the DHPS family.|||Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives. http://togogenome.org/gene/521674:PLIM_RS19870 ^@ http://purl.uniprot.org/uniprot/D5SX55 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 23 kDa subunit family.|||Binds 2 [4Fe-4S] clusters per subunit.|||Cell inner membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS18010 ^@ http://purl.uniprot.org/uniprot/D5SV25 ^@ Cofactor|||Function ^@ Binds 2 [4Fe-4S] clusters.|||Component of a complex that catalyzes the oxidation of glycolate to glyoxylate. http://togogenome.org/gene/521674:PLIM_RS13910 ^@ http://purl.uniprot.org/uniprot/D5SQR5 ^@ Subcellular Location Annotation ^@ Periplasm http://togogenome.org/gene/521674:PLIM_RS19565 ^@ http://purl.uniprot.org/uniprot/D5SWM3 ^@ Similarity ^@ Belongs to the AlaDH/PNT family. http://togogenome.org/gene/521674:PLIM_RS08395 ^@ http://purl.uniprot.org/uniprot/D5SWU8 ^@ Function|||Similarity ^@ Belongs to the sigma-70 factor family.|||Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. http://togogenome.org/gene/521674:PLIM_RS17170 ^@ http://purl.uniprot.org/uniprot/D5SU98 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase S14 family.|||Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.|||Cytoplasm|||Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes. http://togogenome.org/gene/521674:PLIM_RS03720 ^@ http://purl.uniprot.org/uniprot/D5SRL3 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS02315 ^@ http://purl.uniprot.org/uniprot/D5SPR0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL1 family.|||Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.|||Part of the 50S ribosomal subunit.|||Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA. http://togogenome.org/gene/521674:PLIM_RS10600 ^@ http://purl.uniprot.org/uniprot/D5SYU8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the guanylate kinase family.|||Cytoplasm|||Essential for recycling GMP and indirectly, cGMP. http://togogenome.org/gene/521674:PLIM_RS02480 ^@ http://purl.uniprot.org/uniprot/D5SQ70 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS12 family.|||Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.|||With S4 and S5 plays an important role in translational accuracy. http://togogenome.org/gene/521674:PLIM_RS00195 ^@ http://purl.uniprot.org/uniprot/D5SMG9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the beta sliding clamp family.|||Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.|||Cytoplasm|||Forms a ring-shaped head-to-tail homodimer around DNA. http://togogenome.org/gene/521674:PLIM_RS21400 ^@ http://purl.uniprot.org/uniprot/D5SZ76 ^@ Similarity ^@ Belongs to the polysaccharide synthase family. http://togogenome.org/gene/521674:PLIM_RS22535 ^@ http://purl.uniprot.org/uniprot/D5SU25 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/521674:PLIM_RS07725 ^@ http://purl.uniprot.org/uniprot/D5SW38 ^@ Function|||Similarity ^@ Belongs to the PstS family.|||Involved in the system for phosphate transport across the cytoplasmic membrane. http://togogenome.org/gene/521674:PLIM_RS19875 ^@ http://purl.uniprot.org/uniprot/D5SX56 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 6 family.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS15895 ^@ http://purl.uniprot.org/uniprot/D5SSW0 ^@ Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the FliG family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS17295 ^@ http://purl.uniprot.org/uniprot/D5SUC4 ^@ Caution|||Function|||Similarity ^@ Belongs to the DXR family.|||Catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS07825 ^@ http://purl.uniprot.org/uniprot/D5SW57 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS08000 ^@ http://purl.uniprot.org/uniprot/D5SW90 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RnpA family.|||Consists of a catalytic RNA component (M1 or rnpB) and a protein subunit.|||RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. http://togogenome.org/gene/521674:PLIM_RS21260 ^@ http://purl.uniprot.org/uniprot/D5SZ44 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the IF-1 family.|||Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.|||Cytoplasm|||One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. http://togogenome.org/gene/521674:PLIM_RS01185 ^@ http://purl.uniprot.org/uniprot/D5SNT0 ^@ Similarity ^@ Belongs to the SufE family. http://togogenome.org/gene/521674:PLIM_RS17810 ^@ http://purl.uniprot.org/uniprot/D5SUY8 ^@ Cofactor|||Function|||Similarity ^@ Binds 1 zinc ion.|||Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.|||In the C-terminal section; belongs to the HTP reductase family.|||In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family. http://togogenome.org/gene/521674:PLIM_RS20430 ^@ http://purl.uniprot.org/uniprot/D5SXZ2 ^@ Caution|||Function|||Similarity ^@ Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. http://togogenome.org/gene/521674:PLIM_RS15455 ^@ http://purl.uniprot.org/uniprot/D5SSA5 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS15240 ^@ http://purl.uniprot.org/uniprot/D5SS63 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the adenylate kinase family.|||Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.|||Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis. Some bacteria have evolved a zinc-coordinating structure that stabilizes the LID domain.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS13190 ^@ http://purl.uniprot.org/uniprot/D5SQ12 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. http://togogenome.org/gene/521674:PLIM_RS18780 ^@ http://purl.uniprot.org/uniprot/D5SVV5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family.|||Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS20150 ^@ http://purl.uniprot.org/uniprot/D5SXB1 ^@ Similarity ^@ Belongs to the heat shock protein 70 family. http://togogenome.org/gene/521674:PLIM_RS22835 ^@ http://purl.uniprot.org/uniprot/D5SMN2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS00305 ^@ http://purl.uniprot.org/uniprot/D5SMJ1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS13905 ^@ http://purl.uniprot.org/uniprot/D5SQR4 ^@ Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the flagella basal body rod proteins family. http://togogenome.org/gene/521674:PLIM_RS20535 ^@ http://purl.uniprot.org/uniprot/D5SY11 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome c oxidase subunit 3 family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS06860 ^@ http://purl.uniprot.org/uniprot/D5SV93 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 49 kDa subunit family.|||Cell inner membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS16700 ^@ http://purl.uniprot.org/uniprot/D5STN3 ^@ Function|||Similarity ^@ Belongs to the glucose-1-phosphate thymidylyltransferase family.|||Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. http://togogenome.org/gene/521674:PLIM_RS12255 ^@ http://purl.uniprot.org/uniprot/D5SP61 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS16260 ^@ http://purl.uniprot.org/uniprot/D5STF0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS03415 ^@ http://purl.uniprot.org/uniprot/D5SR18 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS12970 ^@ http://purl.uniprot.org/uniprot/D5SPW9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS12905 ^@ http://purl.uniprot.org/uniprot/D5SPV6 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.|||Binds 2 magnesium ions per tetramer.|||Cytoplasm|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/521674:PLIM_RS01360 ^@ http://purl.uniprot.org/uniprot/D5SNW4 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 4L family.|||Cell inner membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS04800 ^@ http://purl.uniprot.org/uniprot/D5SSL8 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Belongs to the prokaryotic/mitochondrial release factor family.|||Cytoplasm|||Methylated by PrmC. Methylation increases the termination efficiency of RF1.|||Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. http://togogenome.org/gene/521674:PLIM_RS05905 ^@ http://purl.uniprot.org/uniprot/D5STZ2 ^@ Function|||Similarity ^@ Belongs to the sigma-70 factor family.|||Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. http://togogenome.org/gene/521674:PLIM_RS15035 ^@ http://purl.uniprot.org/uniprot/D5SS24 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the chaperonin (HSP60) family.|||Cytoplasm|||Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. http://togogenome.org/gene/521674:PLIM_RS10725 ^@ http://purl.uniprot.org/uniprot/D5SYX4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0126 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS01465 ^@ http://purl.uniprot.org/uniprot/D5SNY6 ^@ Similarity ^@ Belongs to the arginase family. Agmatinase subfamily. http://togogenome.org/gene/521674:PLIM_RS15160 ^@ http://purl.uniprot.org/uniprot/D5SS49 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS14880 ^@ http://purl.uniprot.org/uniprot/D5SRZ3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GSP G family.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS03595 ^@ http://purl.uniprot.org/uniprot/D5SR53 ^@ Similarity ^@ Belongs to the RecJ family. http://togogenome.org/gene/521674:PLIM_RS21090 ^@ http://purl.uniprot.org/uniprot/D5SZ13 ^@ Similarity ^@ Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS21590 ^@ http://purl.uniprot.org/uniprot/D5SZB1 ^@ Caution|||Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS19865 ^@ http://purl.uniprot.org/uniprot/D5SX54 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 1 family.|||Cell inner membrane|||Cell membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. http://togogenome.org/gene/521674:PLIM_RS21130 ^@ http://purl.uniprot.org/uniprot/D5SZ20 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS12195 ^@ http://purl.uniprot.org/uniprot/D5SP49 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS09395 ^@ http://purl.uniprot.org/uniprot/D5SYB3 ^@ Similarity ^@ Belongs to the peptidase S1C family. http://togogenome.org/gene/521674:PLIM_RS07060 ^@ http://purl.uniprot.org/uniprot/D5SVD3 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS17930 ^@ http://purl.uniprot.org/uniprot/D5SV11 ^@ Similarity ^@ Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. http://togogenome.org/gene/521674:PLIM_RS07545 ^@ http://purl.uniprot.org/uniprot/D5SW04 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.|||Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS16015 ^@ http://purl.uniprot.org/uniprot/D5SSY3 ^@ Function|||Similarity ^@ Belongs to the cyclophilin-type PPIase family.|||PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. http://togogenome.org/gene/521674:PLIM_RS04870 ^@ http://purl.uniprot.org/uniprot/D5SSN2 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS08865 ^@ http://purl.uniprot.org/uniprot/D5SXH2 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.|||Binds 1 potassium ion per subunit.|||Cytoplasm|||Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.|||Homodimer. Heterotetramer of two MnmE and two MnmG subunits.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS00680 ^@ http://purl.uniprot.org/uniprot/D5SN60 ^@ Similarity ^@ Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/521674:PLIM_RS15090 ^@ http://purl.uniprot.org/uniprot/D5SS34 ^@ Similarity ^@ Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. http://togogenome.org/gene/521674:PLIM_RS12315 ^@ http://purl.uniprot.org/uniprot/D5SP73 ^@ Similarity ^@ Belongs to the UPF0051 (ycf24) family. http://togogenome.org/gene/521674:PLIM_RS00480 ^@ http://purl.uniprot.org/uniprot/D5SMM3 ^@ Similarity ^@ Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. http://togogenome.org/gene/521674:PLIM_RS01400 ^@ http://purl.uniprot.org/uniprot/D5SNX2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS19465 ^@ http://purl.uniprot.org/uniprot/D5SWK2 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS14975 ^@ http://purl.uniprot.org/uniprot/D5SS12 ^@ Similarity ^@ Belongs to the DSD1 family. http://togogenome.org/gene/521674:PLIM_RS02560 ^@ http://purl.uniprot.org/uniprot/D5SQ86 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL5 family.|||Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA and the P site tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.|||This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. http://togogenome.org/gene/521674:PLIM_RS03375 ^@ http://purl.uniprot.org/uniprot/D5SR12 ^@ Similarity ^@ Belongs to the bacterial sugar transferase family. http://togogenome.org/gene/521674:PLIM_RS08770 ^@ http://purl.uniprot.org/uniprot/D5SXF4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.|||Homotetramer.|||Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. http://togogenome.org/gene/521674:PLIM_RS00640 ^@ http://purl.uniprot.org/uniprot/D5SN52 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS16820 ^@ http://purl.uniprot.org/uniprot/D5STQ7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RRF family.|||Cytoplasm|||Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another. http://togogenome.org/gene/521674:PLIM_RS21110 ^@ http://purl.uniprot.org/uniprot/D5SZ16 ^@ Caution|||Cofactor|||Function|||PTM|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PanD family.|||Binds 1 pyruvoyl group covalently per subunit.|||Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.|||Cytoplasm|||Heterooctamer of four alpha and four beta subunits.|||Is synthesized initially as an inactive proenzyme, which is activated by self-cleavage at a specific serine bond to produce a beta-subunit with a hydroxyl group at its C-terminus and an alpha-subunit with a pyruvoyl group at its N-terminus.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS09105 ^@ http://purl.uniprot.org/uniprot/D5SXL9 ^@ Similarity ^@ Belongs to the bacterial microcompartments protein family. http://togogenome.org/gene/521674:PLIM_RS02330 ^@ http://purl.uniprot.org/uniprot/D5SPR3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase beta chain family.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription. http://togogenome.org/gene/521674:PLIM_RS09960 ^@ http://purl.uniprot.org/uniprot/D5SYM3 ^@ Similarity ^@ Belongs to the glutamine synthetase family. http://togogenome.org/gene/521674:PLIM_RS20380 ^@ http://purl.uniprot.org/uniprot/D5SXY2 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS06840 ^@ http://purl.uniprot.org/uniprot/D5SV89 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DNA polymerase type-C family. DnaE2 subfamily.|||Cytoplasm|||DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. http://togogenome.org/gene/521674:PLIM_RS09045 ^@ http://purl.uniprot.org/uniprot/D5SXK7 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.|||Binds 1 pyridoxal phosphate per subunit.|||Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS13890 ^@ http://purl.uniprot.org/uniprot/D5SQR1 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 13 family. http://togogenome.org/gene/521674:PLIM_RS20465 ^@ http://purl.uniprot.org/uniprot/D5SXZ8 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 13 family. http://togogenome.org/gene/521674:PLIM_RS19750 ^@ http://purl.uniprot.org/uniprot/D5SX29 ^@ Similarity ^@ Belongs to the bacterial secretin family. http://togogenome.org/gene/521674:PLIM_RS13955 ^@ http://purl.uniprot.org/uniprot/D5SQS5 ^@ Similarity ^@ Belongs to the DapA family. http://togogenome.org/gene/521674:PLIM_RS02610 ^@ http://purl.uniprot.org/uniprot/D5SQ96 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase alpha chain family.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.|||The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements. http://togogenome.org/gene/521674:PLIM_RS19335 ^@ http://purl.uniprot.org/uniprot/D5SWH7 ^@ Function|||Similarity ^@ Belongs to the bacterioferritin family.|||Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. http://togogenome.org/gene/521674:PLIM_RS17590 ^@ http://purl.uniprot.org/uniprot/D5SUU6 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS21520 ^@ http://purl.uniprot.org/uniprot/D5SZ96 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS17375 ^@ http://purl.uniprot.org/uniprot/D5SUE1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the glycosyltransferase 87 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS00940 ^@ http://purl.uniprot.org/uniprot/D5SNB0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the diaminopimelate epimerase family.|||Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS08090 ^@ http://purl.uniprot.org/uniprot/D5SWP2 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the IPP transferase family.|||Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS13465 ^@ http://purl.uniprot.org/uniprot/D5SQI2 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsA/MreB family.|||Cytoplasm|||Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.|||Forms polymers.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS07635 ^@ http://purl.uniprot.org/uniprot/D5SW20 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.|||Could methylate the ribose at the nucleotide 34 wobble position in tRNA.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS07410 ^@ http://purl.uniprot.org/uniprot/D5SVJ6 ^@ Similarity ^@ Belongs to the UPF0301 (AlgH) family. http://togogenome.org/gene/521674:PLIM_RS06440 ^@ http://purl.uniprot.org/uniprot/D5SUM8 ^@ Similarity ^@ Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. http://togogenome.org/gene/521674:PLIM_RS17545 ^@ http://purl.uniprot.org/uniprot/D5SUH1 ^@ Caution|||Function|||Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily.|||Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS15905 ^@ http://purl.uniprot.org/uniprot/D5SSW2 ^@ Subcellular Location Annotation ^@ Cytoplasm http://togogenome.org/gene/521674:PLIM_RS06575 ^@ http://purl.uniprot.org/uniprot/D5SUQ3 ^@ Similarity ^@ Belongs to the bacterial histone-like protein family. http://togogenome.org/gene/521674:PLIM_RS00880 ^@ http://purl.uniprot.org/uniprot/D5SN99 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase alpha/beta chains family.|||Cell inner membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. http://togogenome.org/gene/521674:PLIM_RS06750 ^@ http://purl.uniprot.org/uniprot/D5SUT9 ^@ Similarity ^@ Belongs to the transferase hexapeptide repeat family. http://togogenome.org/gene/521674:PLIM_RS06960 ^@ http://purl.uniprot.org/uniprot/D5SVB3 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecD/SecF family. SecD subfamily.|||Belongs to the SecD/SecF family. SecF subfamily.|||Cell inner membrane|||Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.|||Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. http://togogenome.org/gene/521674:PLIM_RS18345 ^@ http://purl.uniprot.org/uniprot/D5SVM0 ^@ Cofactor|||Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.|||Binds 1 FAD per subunit. http://togogenome.org/gene/521674:PLIM_RS04480 ^@ http://purl.uniprot.org/uniprot/D5SSE9 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.|||Cytoplasm|||Homotetramer.|||Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate.|||There are 2 substrate-binding sites: the catalytic A site, and the non-catalytic B site that may play a role in the transfer of substrate or product between the active site and the solvent. Alternatively, the B site may bind allosteric effectors. http://togogenome.org/gene/521674:PLIM_RS08570 ^@ http://purl.uniprot.org/uniprot/D5SWY2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC transporter superfamily. ABCF family. Uup subfamily.|||Cytoplasm|||Probably plays a role in ribosome assembly or function. May be involved in resolution of branched DNA intermediates that result from template switching in postreplication gaps. Binds DNA and has ATPase activity. http://togogenome.org/gene/521674:PLIM_RS01290 ^@ http://purl.uniprot.org/uniprot/D5SNV1 ^@ Similarity ^@ Belongs to the UPF0047 family. http://togogenome.org/gene/521674:PLIM_RS06545 ^@ http://purl.uniprot.org/uniprot/D5SUP7 ^@ Subcellular Location Annotation ^@ Cytoplasm http://togogenome.org/gene/521674:PLIM_RS09340 ^@ http://purl.uniprot.org/uniprot/D5SXR3 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the heat shock protein 90 family.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Molecular chaperone. Has ATPase activity. http://togogenome.org/gene/521674:PLIM_RS09485 ^@ http://purl.uniprot.org/uniprot/D5SYD1 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FGAMS family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.|||Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL. http://togogenome.org/gene/521674:PLIM_RS17790 ^@ http://purl.uniprot.org/uniprot/D5SUY5 ^@ Similarity ^@ Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. http://togogenome.org/gene/521674:PLIM_RS08140 ^@ http://purl.uniprot.org/uniprot/D5SWQ2 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/521674:PLIM_RS13950 ^@ http://purl.uniprot.org/uniprot/D5SQS4 ^@ Function|||Similarity ^@ Belongs to the proline racemase family.|||Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Displays no proline racemase activity. http://togogenome.org/gene/521674:PLIM_RS19415 ^@ http://purl.uniprot.org/uniprot/D5SWJ3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS17765 ^@ http://purl.uniprot.org/uniprot/D5SUY0 ^@ Function|||Similarity ^@ Belongs to the MsrA Met sulfoxide reductase family.|||Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. http://togogenome.org/gene/521674:PLIM_RS15665 ^@ http://purl.uniprot.org/uniprot/D5SSS2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS07760 ^@ http://purl.uniprot.org/uniprot/D5SW45 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS19235 ^@ http://purl.uniprot.org/uniprot/D5SWF9 ^@ Similarity ^@ Belongs to the SIS family. GutQ/KpsF subfamily. http://togogenome.org/gene/521674:PLIM_RS17235 ^@ http://purl.uniprot.org/uniprot/D5SUA9 ^@ Cofactor|||Function|||Similarity ^@ Adenine glycosylase active on G-A mispairs.|||Belongs to the Nth/MutY family.|||Binds 1 [4Fe-4S] cluster. http://togogenome.org/gene/521674:PLIM_RS21935 ^@ http://purl.uniprot.org/uniprot/D5SZG2 ^@ Similarity ^@ Belongs to the N(4)/N(6)-methyltransferase family. http://togogenome.org/gene/521674:PLIM_RS01370 ^@ http://purl.uniprot.org/uniprot/D5SNW6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 4 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS16090 ^@ http://purl.uniprot.org/uniprot/D5SSZ6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS18570 ^@ http://purl.uniprot.org/uniprot/D5SVR7 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the adenosylhomocysteinase family.|||Binds 1 NAD(+) per subunit.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. http://togogenome.org/gene/521674:PLIM_RS11745 ^@ http://purl.uniprot.org/uniprot/D5SNJ1 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL28 family. http://togogenome.org/gene/521674:PLIM_RS23005 ^@ http://purl.uniprot.org/uniprot/D5SR92 ^@ Caution|||Subcellular Location Annotation ^@ Cell inner membrane|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS09440 ^@ http://purl.uniprot.org/uniprot/D5SYC2 ^@ Similarity ^@ Belongs to the inositol monophosphatase superfamily. http://togogenome.org/gene/521674:PLIM_RS00990 ^@ http://purl.uniprot.org/uniprot/D5SNB9 ^@ Function|||Similarity ^@ Belongs to the NadC/ModD family.|||Involved in the catabolism of quinolinic acid (QA). http://togogenome.org/gene/521674:PLIM_RS20735 ^@ http://purl.uniprot.org/uniprot/D5SY50 ^@ Similarity ^@ Belongs to the TrpF family. http://togogenome.org/gene/521674:PLIM_RS02545 ^@ http://purl.uniprot.org/uniprot/D5SQ83 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS17 family.|||One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS14815 ^@ http://purl.uniprot.org/uniprot/D5SRY4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS03920 ^@ http://purl.uniprot.org/uniprot/D5SRQ0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the AIR synthase family.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS02120 ^@ http://purl.uniprot.org/uniprot/D5SPM9 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS18850 ^@ http://purl.uniprot.org/uniprot/D5SVW9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PPase family.|||Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.|||Cytoplasm|||Homohexamer. http://togogenome.org/gene/521674:PLIM_RS02115 ^@ http://purl.uniprot.org/uniprot/D5SPM8 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS08835 ^@ http://purl.uniprot.org/uniprot/D5SXG6 ^@ Similarity ^@ Belongs to the UPF0047 family. http://togogenome.org/gene/521674:PLIM_RS03630 ^@ http://purl.uniprot.org/uniprot/D5SR60 ^@ Caution|||Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurCDEF family. MurE subfamily.|||Carboxylation is probably crucial for Mg(2+) binding and, consequently, for the gamma-phosphate positioning of ATP.|||Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS02510 ^@ http://purl.uniprot.org/uniprot/D5SQ76 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL23 family.|||One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.|||Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome. http://togogenome.org/gene/521674:PLIM_RS11595 ^@ http://purl.uniprot.org/uniprot/D5SNG4 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS18920 ^@ http://purl.uniprot.org/uniprot/D5SVY2 ^@ Function|||Similarity ^@ Belongs to the dus family.|||Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. http://togogenome.org/gene/521674:PLIM_RS01025 ^@ http://purl.uniprot.org/uniprot/D5SNC5 ^@ Similarity ^@ Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family. http://togogenome.org/gene/521674:PLIM_RS17405 ^@ http://purl.uniprot.org/uniprot/D5SUE6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS15040 ^@ http://purl.uniprot.org/uniprot/D5SS25 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GroES chaperonin family.|||Cytoplasm|||Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.|||Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel. http://togogenome.org/gene/521674:PLIM_RS13660 ^@ http://purl.uniprot.org/uniprot/D5SQL8 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS04455 ^@ http://purl.uniprot.org/uniprot/D5SSE5 ^@ Similarity ^@ Belongs to the helicase family. UvrD subfamily. http://togogenome.org/gene/521674:PLIM_RS10300 ^@ http://purl.uniprot.org/uniprot/D5SYP0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-3 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS18510 ^@ http://purl.uniprot.org/uniprot/D5SVQ6 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/521674:PLIM_RS02490 ^@ http://purl.uniprot.org/uniprot/D5SQ72 ^@ Similarity ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. http://togogenome.org/gene/521674:PLIM_RS22530 ^@ http://purl.uniprot.org/uniprot/D5STY9 ^@ Function|||Similarity ^@ Belongs to the GTP-binding SRP family.|||Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum. http://togogenome.org/gene/521674:PLIM_RS07815 ^@ http://purl.uniprot.org/uniprot/D5SW55 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M42 family.|||Binds 2 divalent metal cations per subunit. http://togogenome.org/gene/521674:PLIM_RS21060 ^@ http://purl.uniprot.org/uniprot/D5SZ08 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/521674:PLIM_RS00460 ^@ http://purl.uniprot.org/uniprot/D5SMM0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS06295 ^@ http://purl.uniprot.org/uniprot/D5SUK0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the HsdR family.|||Subunit R is required for both nuclease and ATPase activities, but not for modification.|||The type I restriction/modification system is composed of three polypeptides R, M and S. http://togogenome.org/gene/521674:PLIM_RS09155 ^@ http://purl.uniprot.org/uniprot/D5SXM9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.|||Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.|||Monomer.|||Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed. http://togogenome.org/gene/521674:PLIM_RS12370 ^@ http://purl.uniprot.org/uniprot/D5SP82 ^@ Similarity ^@ Belongs to the LarC family. http://togogenome.org/gene/521674:PLIM_RS08255 ^@ http://purl.uniprot.org/uniprot/D5SWS2 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ArgJ family.|||Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.|||Cytoplasm|||Heterotetramer of two alpha and two beta chains.|||Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway. http://togogenome.org/gene/521674:PLIM_RS21300 ^@ http://purl.uniprot.org/uniprot/D5SZ51 ^@ Similarity ^@ Belongs to the pseudouridine synthase RsuA family. http://togogenome.org/gene/521674:PLIM_RS06570 ^@ http://purl.uniprot.org/uniprot/D5SUQ2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.|||Catalyzes the oxidation of L-aspartate to iminoaspartate.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS19615 ^@ http://purl.uniprot.org/uniprot/D5SWN2 ^@ Caution|||Similarity ^@ Belongs to the globin family. Two-domain flavohemoproteins subfamily.|||In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS01840 ^@ http://purl.uniprot.org/uniprot/D5SPH7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL21 family.|||Part of the 50S ribosomal subunit. Contacts protein L20.|||This protein binds to 23S rRNA in the presence of protein L20. http://togogenome.org/gene/521674:PLIM_RS09320 ^@ http://purl.uniprot.org/uniprot/D5SXR0 ^@ Similarity ^@ Belongs to the myo-inositol 1-phosphate synthase family. http://togogenome.org/gene/521674:PLIM_RS09905 ^@ http://purl.uniprot.org/uniprot/D5SYL3 ^@ Domain|||Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CheB family.|||Contains a C-terminal catalytic domain, and an N-terminal region which modulates catalytic activity.|||Cytoplasm|||Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.|||Phosphorylated by CheA. Phosphorylation of the N-terminal regulatory domain activates the methylesterase activity. http://togogenome.org/gene/521674:PLIM_RS09220 ^@ http://purl.uniprot.org/uniprot/D5SXP2 ^@ Similarity ^@ Belongs to the heat shock protein 90 family. http://togogenome.org/gene/521674:PLIM_RS14445 ^@ http://purl.uniprot.org/uniprot/D5SRE0 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the radical SAM superfamily. MqnC family.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2). http://togogenome.org/gene/521674:PLIM_RS08810 ^@ http://purl.uniprot.org/uniprot/D5SXG1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS09290 ^@ http://purl.uniprot.org/uniprot/D5SXQ5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the QueA family.|||Cytoplasm|||Monomer.|||Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). http://togogenome.org/gene/521674:PLIM_RS12880 ^@ http://purl.uniprot.org/uniprot/D5SPV0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the gamma-glutamyl phosphate reductase family.|||Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS11600 ^@ http://purl.uniprot.org/uniprot/D5SNG5 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the Lgt family.|||Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.|||Cell inner membrane http://togogenome.org/gene/521674:PLIM_RS16370 ^@ http://purl.uniprot.org/uniprot/D5STH0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.|||Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane.|||The complex is composed of two ATP-binding proteins (CysA), two transmembrane proteins (CysT and CysW) and a solute-binding protein (CysP). http://togogenome.org/gene/521674:PLIM_RS12215 ^@ http://purl.uniprot.org/uniprot/D5SP52 ^@ Similarity ^@ Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. http://togogenome.org/gene/521674:PLIM_RS11650 ^@ http://purl.uniprot.org/uniprot/D5SNH3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS13200 ^@ http://purl.uniprot.org/uniprot/D5SQ14 ^@ Function|||Similarity ^@ Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.|||Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition. http://togogenome.org/gene/521674:PLIM_RS20900 ^@ http://purl.uniprot.org/uniprot/D5SY83 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the FliR/MopE/SpaR family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS11185 ^@ http://purl.uniprot.org/uniprot/D5SMU4 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A Gly-cisPro motif from one monomer fits into the active site of the other monomer to allow specific chiral rejection of L-amino acids.|||An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.|||Belongs to the DTD family.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS09100 ^@ http://purl.uniprot.org/uniprot/D5SXL8 ^@ Similarity ^@ Belongs to the bacterial microcompartments protein family. http://togogenome.org/gene/521674:PLIM_RS01605 ^@ http://purl.uniprot.org/uniprot/D5SP07 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.|||Belongs to the CsrA/RsmA family.|||Cytoplasm|||Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core. http://togogenome.org/gene/521674:PLIM_RS11155 ^@ http://purl.uniprot.org/uniprot/D5SMT7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.|||Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.|||Cytoplasm|||Mitochondrion http://togogenome.org/gene/521674:PLIM_RS00420 ^@ http://purl.uniprot.org/uniprot/D5SML4 ^@ Function|||Similarity ^@ Belongs to the NadD family.|||Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). http://togogenome.org/gene/521674:PLIM_RS12885 ^@ http://purl.uniprot.org/uniprot/D5SPV1 ^@ Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the FliM family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS03690 ^@ http://purl.uniprot.org/uniprot/D5SRK7 ^@ Function|||Similarity ^@ Belongs to the RecR family.|||May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. http://togogenome.org/gene/521674:PLIM_RS12205 ^@ http://purl.uniprot.org/uniprot/D5SP51 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS19200 ^@ http://purl.uniprot.org/uniprot/D5SWF2 ^@ Caution|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS14690 ^@ http://purl.uniprot.org/uniprot/D5SRJ0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS02110 ^@ http://purl.uniprot.org/uniprot/D5SPM7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GSP F family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS04395 ^@ http://purl.uniprot.org/uniprot/D5SSD3 ^@ Similarity ^@ Belongs to the DegT/DnrJ/EryC1 family. http://togogenome.org/gene/521674:PLIM_RS05255 ^@ http://purl.uniprot.org/uniprot/D5ST92 ^@ Similarity ^@ Belongs to the BlaI transcriptional regulatory family. http://togogenome.org/gene/521674:PLIM_RS04270 ^@ http://purl.uniprot.org/uniprot/D5SRW9 ^@ Subcellular Location Annotation ^@ Cytoplasm http://togogenome.org/gene/521674:PLIM_RS00065 ^@ http://purl.uniprot.org/uniprot/D5SME4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurB family.|||Cell wall formation.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS05315 ^@ http://purl.uniprot.org/uniprot/D5STA4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS04805 ^@ http://purl.uniprot.org/uniprot/D5SSL9 ^@ Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL31 family. Type B subfamily.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS19980 ^@ http://purl.uniprot.org/uniprot/D5SX75 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS09710 ^@ http://purl.uniprot.org/uniprot/D5SYH5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the KdpC family.|||Cell inner membrane|||Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.|||The system is composed of three essential subunits: KdpA, KdpB and KdpC. http://togogenome.org/gene/521674:PLIM_RS08565 ^@ http://purl.uniprot.org/uniprot/D5SWY1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.|||Cell inner membrane|||Membrane|||Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. http://togogenome.org/gene/521674:PLIM_RS11470 ^@ http://purl.uniprot.org/uniprot/D5SMZ8 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.|||Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs. http://togogenome.org/gene/521674:PLIM_RS11605 ^@ http://purl.uniprot.org/uniprot/D5SNG6 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the pantothenate synthetase family.|||Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.|||Cytoplasm|||Homodimer.|||The reaction proceeds by a bi uni uni bi ping pong mechanism. http://togogenome.org/gene/521674:PLIM_RS07795 ^@ http://purl.uniprot.org/uniprot/D5SW51 ^@ Caution|||Similarity|||Subunit ^@ Belongs to the glutaminase family.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS23225 ^@ http://purl.uniprot.org/uniprot/D5SV05 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS18055 ^@ http://purl.uniprot.org/uniprot/D5SV35 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subunit ^@ Belongs to the IMPDH/GMPR family.|||Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH. http://togogenome.org/gene/521674:PLIM_RS13920 ^@ http://purl.uniprot.org/uniprot/D5SQR7 ^@ Function|||Subcellular Location Annotation ^@ Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.|||Bacterial flagellum basal body http://togogenome.org/gene/521674:PLIM_RS05885 ^@ http://purl.uniprot.org/uniprot/D5STY8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.|||Cell membrane|||Membrane|||Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin. http://togogenome.org/gene/521674:PLIM_RS16165 ^@ http://purl.uniprot.org/uniprot/D5ST11 ^@ Similarity ^@ In the N-terminal section; belongs to the CRISPR-associated nuclease Cas3-HD family.|||In the central section; belongs to the CRISPR-associated helicase Cas3 family. http://togogenome.org/gene/521674:PLIM_RS17540 ^@ http://purl.uniprot.org/uniprot/D5SUH0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DnaA family.|||Cytoplasm|||Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. http://togogenome.org/gene/521674:PLIM_RS06200 ^@ http://purl.uniprot.org/uniprot/D5SUI3 ^@ Caution|||Function|||Similarity ^@ Belongs to the glucose-6-phosphate dehydrogenase family.|||Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS02580 ^@ http://purl.uniprot.org/uniprot/D5SQ90 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL18 family.|||Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.|||This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. http://togogenome.org/gene/521674:PLIM_RS06830 ^@ http://purl.uniprot.org/uniprot/D5SV87 ^@ Function|||Similarity ^@ Belongs to the AIR carboxylase family. Class I subfamily.|||Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). http://togogenome.org/gene/521674:PLIM_RS16965 ^@ http://purl.uniprot.org/uniprot/D5SU60 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS13555 ^@ http://purl.uniprot.org/uniprot/D5SQJ9 ^@ Similarity ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/521674:PLIM_RS07370 ^@ http://purl.uniprot.org/uniprot/D5SVI9 ^@ Similarity ^@ Belongs to the aspartokinase family. http://togogenome.org/gene/521674:PLIM_RS13210 ^@ http://purl.uniprot.org/uniprot/D5SQ16 ^@ Similarity ^@ Belongs to the fabD family. http://togogenome.org/gene/521674:PLIM_RS04530 ^@ http://purl.uniprot.org/uniprot/D5SSF9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bS18 family.|||Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6. http://togogenome.org/gene/521674:PLIM_RS01580 ^@ http://purl.uniprot.org/uniprot/D5SP01 ^@ Similarity ^@ Belongs to the DNA polymerase type-Y family. http://togogenome.org/gene/521674:PLIM_RS13500 ^@ http://purl.uniprot.org/uniprot/D5SQI9 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bS6 family.|||Binds together with S18 to 16S ribosomal RNA. http://togogenome.org/gene/521674:PLIM_RS02570 ^@ http://purl.uniprot.org/uniprot/D5SQ88 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS8 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts proteins S5 and S12. http://togogenome.org/gene/521674:PLIM_RS14920 ^@ http://purl.uniprot.org/uniprot/D5SS02 ^@ Similarity ^@ Belongs to the OMP decarboxylase family. Type 2 subfamily. http://togogenome.org/gene/521674:PLIM_RS16720 ^@ http://purl.uniprot.org/uniprot/D5STN7 ^@ Similarity ^@ Belongs to the FKBP-type PPIase family. http://togogenome.org/gene/521674:PLIM_RS00340 ^@ http://purl.uniprot.org/uniprot/D5SMJ9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS18390 ^@ http://purl.uniprot.org/uniprot/D5SVN0 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS13740 ^@ http://purl.uniprot.org/uniprot/D5SQN5 ^@ Similarity ^@ Belongs to the GTP cyclohydrolase I type 2/NIF3 family. http://togogenome.org/gene/521674:PLIM_RS08550 ^@ http://purl.uniprot.org/uniprot/D5SWX8 ^@ Similarity ^@ Belongs to the UPF0178 family. http://togogenome.org/gene/521674:PLIM_RS23165 ^@ http://purl.uniprot.org/uniprot/D5SUC6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TerC family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS11120 ^@ http://purl.uniprot.org/uniprot/D5SMT0 ^@ Similarity ^@ Belongs to the peptidase S49 family. http://togogenome.org/gene/521674:PLIM_RS01760 ^@ http://purl.uniprot.org/uniprot/D5SPG2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.|||Belongs to the CsrA/RsmA family.|||Cytoplasm|||Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core. http://togogenome.org/gene/521674:PLIM_RS16265 ^@ http://purl.uniprot.org/uniprot/D5STF1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS22235 ^@ http://purl.uniprot.org/uniprot/D5SNW3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 6 family.|||Cell membrane|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS10580 ^@ http://purl.uniprot.org/uniprot/D5SYU4 ^@ Function|||Subcellular Location Annotation ^@ Catalyzes the Claisen rearrangement of chorismate to prephenate and the decarboxylation/dehydration of prephenate to phenylpyruvate.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS10570 ^@ http://purl.uniprot.org/uniprot/D5SYU2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ClpA/ClpB family.|||Cytoplasm|||Homohexamer. The oligomerization is ATP-dependent.|||Homohexamer; The oligomerization is ATP-dependent.|||Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. http://togogenome.org/gene/521674:PLIM_RS14560 ^@ http://purl.uniprot.org/uniprot/D5SRG4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the pyrroline-5-carboxylate reductase family.|||Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS17775 ^@ http://purl.uniprot.org/uniprot/D5SUY2 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the IspH family.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. http://togogenome.org/gene/521674:PLIM_RS21010 ^@ http://purl.uniprot.org/uniprot/D5SYA5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS14605 ^@ http://purl.uniprot.org/uniprot/D5SRH3 ^@ Function|||Similarity ^@ Belongs to the NAD-dependent DNA ligase family. LigA subfamily.|||DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. http://togogenome.org/gene/521674:PLIM_RS04790 ^@ http://purl.uniprot.org/uniprot/D5SSL6 ^@ Similarity ^@ Belongs to the Skp family. http://togogenome.org/gene/521674:PLIM_RS17330 ^@ http://purl.uniprot.org/uniprot/D5SUD2 ^@ Similarity ^@ Belongs to the metallophosphoesterase superfamily. YfcE family. http://togogenome.org/gene/521674:PLIM_RS03265 ^@ http://purl.uniprot.org/uniprot/D5SQZ0 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/521674:PLIM_RS08185 ^@ http://purl.uniprot.org/uniprot/D5SWR1 ^@ Cofactor ^@ Binds 1 zinc ion per subunit. http://togogenome.org/gene/521674:PLIM_RS13305 ^@ http://purl.uniprot.org/uniprot/D5SQ38 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase RluA family.|||Responsible for synthesis of pseudouridine from uracil. http://togogenome.org/gene/521674:PLIM_RS01170 ^@ http://purl.uniprot.org/uniprot/D5SNS8 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ribonuclease III family.|||Cytoplasm|||Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS20525 ^@ http://purl.uniprot.org/uniprot/D5SY09 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome c oxidase subunit 3 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS14705 ^@ http://purl.uniprot.org/uniprot/D5SRJ3 ^@ Caution|||Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0056 (MarC) family.|||Cell inner membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane http://togogenome.org/gene/521674:PLIM_RS03890 ^@ http://purl.uniprot.org/uniprot/D5SRP4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS4 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S5 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/521674:PLIM_RS17010 ^@ http://purl.uniprot.org/uniprot/D5SU69 ^@ Cofactor|||Miscellaneous|||Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.|||Binds 1 FAD per subunit.|||The active site is a redox-active disulfide bond. http://togogenome.org/gene/521674:PLIM_RS03570 ^@ http://purl.uniprot.org/uniprot/D5SR48 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS21970 ^@ http://purl.uniprot.org/uniprot/D5SZG9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.|||Belongs to the CsrA/RsmA family.|||Cytoplasm|||Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core. http://togogenome.org/gene/521674:PLIM_RS16845 ^@ http://purl.uniprot.org/uniprot/D5STR2 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DapB family.|||Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.|||Cytoplasm|||Homotetramer.|||Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction. http://togogenome.org/gene/521674:PLIM_RS16365 ^@ http://purl.uniprot.org/uniprot/D5STG9 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Membrane|||Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane.|||The complex is composed of two ATP-binding proteins (CysA), two transmembrane proteins (CysT and CysW) and a solute-binding protein (CysP). http://togogenome.org/gene/521674:PLIM_RS01690 ^@ http://purl.uniprot.org/uniprot/D5SP24 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0382 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS10495 ^@ http://purl.uniprot.org/uniprot/D5SYS8 ^@ Similarity|||Subunit ^@ Belongs to the CarA family.|||Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate. http://togogenome.org/gene/521674:PLIM_RS10165 ^@ http://purl.uniprot.org/uniprot/D5SXV8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS01705 ^@ http://purl.uniprot.org/uniprot/D5SP27 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytidylate kinase family. Type 1 subfamily.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS14720 ^@ http://purl.uniprot.org/uniprot/D5SRJ6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS01235 ^@ http://purl.uniprot.org/uniprot/D5SNU0 ^@ Similarity ^@ Belongs to the thioredoxin family. http://togogenome.org/gene/521674:PLIM_RS18185 ^@ http://purl.uniprot.org/uniprot/D5SV62 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/521674:PLIM_RS08870 ^@ http://purl.uniprot.org/uniprot/D5SXH3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the OXA1/ALB3/YidC family. Type 1 subfamily.|||Cell inner membrane|||Interacts with the Sec translocase complex via SecD. Specifically interacts with transmembrane segments of nascent integral membrane proteins during membrane integration.|||Membrane|||Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. http://togogenome.org/gene/521674:PLIM_RS05370 ^@ http://purl.uniprot.org/uniprot/D5STB5 ^@ Caution|||Function|||Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. Fucose synthase subfamily.|||Catalyzes the two-step NADP-dependent conversion of GDP-4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS00800 ^@ http://purl.uniprot.org/uniprot/D5SN84 ^@ Similarity ^@ Belongs to the Mg-chelatase subunits D/I family. ComM subfamily. http://togogenome.org/gene/521674:PLIM_RS17840 ^@ http://purl.uniprot.org/uniprot/D5SUZ3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.|||Cell inner membrane|||Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner. http://togogenome.org/gene/521674:PLIM_RS00055 ^@ http://purl.uniprot.org/uniprot/D5SME2 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the D-alanine--D-alanine ligase family.|||Binds 2 magnesium or manganese ions per subunit.|||Cell wall formation.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS19215 ^@ http://purl.uniprot.org/uniprot/D5SWF5 ^@ Similarity ^@ Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS16620 ^@ http://purl.uniprot.org/uniprot/D5STL7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CN hydrolase family. Apolipoprotein N-acyltransferase subfamily.|||Catalyzes the phospholipid dependent N-acylation of the N-terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS19345 ^@ http://purl.uniprot.org/uniprot/D5SWH9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS01375 ^@ http://purl.uniprot.org/uniprot/D5SNW7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 2 family.|||Cell inner membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS06105 ^@ http://purl.uniprot.org/uniprot/D5SU32 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS18005 ^@ http://purl.uniprot.org/uniprot/D5SV24 ^@ Function|||Similarity ^@ Belongs to the iron/manganese superoxide dismutase family.|||Destroys radicals which are normally produced within the cells and which are toxic to biological systems. http://togogenome.org/gene/521674:PLIM_RS22185 ^@ http://purl.uniprot.org/uniprot/D5SN83 ^@ Function|||Similarity ^@ Belongs to the LpxK family.|||Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). http://togogenome.org/gene/521674:PLIM_RS07765 ^@ http://purl.uniprot.org/uniprot/D5SW46 ^@ Similarity ^@ Belongs to the phosphate acetyltransferase and butyryltransferase family. http://togogenome.org/gene/521674:PLIM_RS04420 ^@ http://purl.uniprot.org/uniprot/D5SSD7 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the tRNA pseudouridine synthase TruA family.|||Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS05850 ^@ http://purl.uniprot.org/uniprot/D5STY2 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Homodimer.|||Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. http://togogenome.org/gene/521674:PLIM_RS15660 ^@ http://purl.uniprot.org/uniprot/D5SSS0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS09725 ^@ http://purl.uniprot.org/uniprot/D5SYH8 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS03315 ^@ http://purl.uniprot.org/uniprot/D5SR00 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the 2-oxoacid dehydrogenase family.|||Binds 1 lipoyl cofactor covalently.|||E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2). http://togogenome.org/gene/521674:PLIM_RS12600 ^@ http://purl.uniprot.org/uniprot/D5SPC8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RuvA family.|||Forms a complex with RuvB.|||The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. http://togogenome.org/gene/521674:PLIM_RS07890 ^@ http://purl.uniprot.org/uniprot/D5SW67 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS06400 ^@ http://purl.uniprot.org/uniprot/D5SUM1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA.|||Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. BipA subfamily.|||Cytoplasm|||Monomer. http://togogenome.org/gene/521674:PLIM_RS15355 ^@ http://purl.uniprot.org/uniprot/D5SS85 ^@ Function|||Similarity ^@ Belongs to the PINc/VapC protein family.|||Toxic component of a toxin-antitoxin (TA) system. An RNase. http://togogenome.org/gene/521674:PLIM_RS02590 ^@ http://purl.uniprot.org/uniprot/D5SQ92 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL15 family.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS02215 ^@ http://purl.uniprot.org/uniprot/D5SPP6 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS13935 ^@ http://purl.uniprot.org/uniprot/D5SQS0 ^@ Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum|||Belongs to the flagella basal body rod proteins family.|||Secreted http://togogenome.org/gene/521674:PLIM_RS11190 ^@ http://purl.uniprot.org/uniprot/D5SMU5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).|||Belongs to the AccA family.|||Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS01660 ^@ http://purl.uniprot.org/uniprot/D5SP19 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the aconitase/IPM isomerase family. LeuC type 1 subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/521674:PLIM_RS06720 ^@ http://purl.uniprot.org/uniprot/D5SUT3 ^@ Similarity ^@ Belongs to the nitroreductase family. http://togogenome.org/gene/521674:PLIM_RS12995 ^@ http://purl.uniprot.org/uniprot/D5SPX5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the chaperonin (HSP60) family.|||Cytoplasm|||Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.|||Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. http://togogenome.org/gene/521674:PLIM_RS05245 ^@ http://purl.uniprot.org/uniprot/D5ST90 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS00335 ^@ http://purl.uniprot.org/uniprot/D5SMJ8 ^@ Similarity ^@ Belongs to the peptidase M24B family. http://togogenome.org/gene/521674:PLIM_RS06910 ^@ http://purl.uniprot.org/uniprot/D5SVA3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the Iojap/RsfS family.|||Cytoplasm|||Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.|||Interacts with ribosomal protein L14 (rplN). http://togogenome.org/gene/521674:PLIM_RS07620 ^@ http://purl.uniprot.org/uniprot/D5SW18 ^@ Similarity ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/521674:PLIM_RS06865 ^@ http://purl.uniprot.org/uniprot/D5SV94 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 30 kDa subunit family.|||Cell inner membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS08505 ^@ http://purl.uniprot.org/uniprot/D5SWX1 ^@ Caution ^@ Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS04495 ^@ http://purl.uniprot.org/uniprot/D5SSF2 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bS20 family.|||Binds directly to 16S ribosomal RNA. http://togogenome.org/gene/521674:PLIM_RS19545 ^@ http://purl.uniprot.org/uniprot/D5SWL9 ^@ Cofactor ^@ Binds 2 Zn(2+) ions per subunit. http://togogenome.org/gene/521674:PLIM_RS00785 ^@ http://purl.uniprot.org/uniprot/D5SN81 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GSP F family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS07290 ^@ http://purl.uniprot.org/uniprot/D5SVH3 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/521674:PLIM_RS15910 ^@ http://purl.uniprot.org/uniprot/D5SSW3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the FliJ family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS10150 ^@ http://purl.uniprot.org/uniprot/D5SXV5 ^@ Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily. http://togogenome.org/gene/521674:PLIM_RS09240 ^@ http://purl.uniprot.org/uniprot/D5SXP5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS03030 ^@ http://purl.uniprot.org/uniprot/D5SQG7 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS18235 ^@ http://purl.uniprot.org/uniprot/D5SV71 ^@ Function|||Similarity ^@ Acts on leucine, isoleucine and valine.|||Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/521674:PLIM_RS04730 ^@ http://purl.uniprot.org/uniprot/D5SSK4 ^@ Similarity ^@ Belongs to the helicase family. RecG subfamily. http://togogenome.org/gene/521674:PLIM_RS01965 ^@ http://purl.uniprot.org/uniprot/D5SPK1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the polyribonucleotide nucleotidyltransferase family.|||Cytoplasm|||Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction. http://togogenome.org/gene/521674:PLIM_RS00510 ^@ http://purl.uniprot.org/uniprot/D5SN23 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the radical SAM superfamily. MqnE family.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate. http://togogenome.org/gene/521674:PLIM_RS21020 ^@ http://purl.uniprot.org/uniprot/D5SYZ9 ^@ Cofactor|||Similarity ^@ Belongs to the WrbA family.|||Binds 1 FMN per monomer. http://togogenome.org/gene/521674:PLIM_RS08205 ^@ http://purl.uniprot.org/uniprot/D5SWR5 ^@ Similarity ^@ Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. http://togogenome.org/gene/521674:PLIM_RS00945 ^@ http://purl.uniprot.org/uniprot/D5SNB1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.|||Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS19885 ^@ http://purl.uniprot.org/uniprot/D5SX58 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS08020 ^@ http://purl.uniprot.org/uniprot/D5SW94 ^@ Similarity|||Subunit ^@ Belongs to the ALAD family.|||Homooctamer. http://togogenome.org/gene/521674:PLIM_RS10710 ^@ http://purl.uniprot.org/uniprot/D5SYX1 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the zinc-containing alcohol dehydrogenase family.|||Binds 2 Zn(2+) ions per subunit.|||Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2-amino-3-ketobutyrate.|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/521674:PLIM_RS21415 ^@ http://purl.uniprot.org/uniprot/D5SZ79 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. FtsY subfamily.|||Cell inner membrane|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).|||Membrane|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. http://togogenome.org/gene/521674:PLIM_RS02205 ^@ http://purl.uniprot.org/uniprot/D5SPP4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS10195 ^@ http://purl.uniprot.org/uniprot/D5SXW4 ^@ Similarity ^@ Belongs to the galactose-1-phosphate uridylyltransferase type 1 family. http://togogenome.org/gene/521674:PLIM_RS04835 ^@ http://purl.uniprot.org/uniprot/D5SSM6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS13915 ^@ http://purl.uniprot.org/uniprot/D5SQR6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.|||Bacterial flagellum basal body|||Belongs to the FlgH family. http://togogenome.org/gene/521674:PLIM_RS04200 ^@ http://purl.uniprot.org/uniprot/D5SRV5 ^@ Similarity ^@ Belongs to the bacterial secretin family. http://togogenome.org/gene/521674:PLIM_RS13150 ^@ http://purl.uniprot.org/uniprot/D5SQ04 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TACO1 family.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS14110 ^@ http://purl.uniprot.org/uniprot/D5SR75 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RNase PH family.|||Homohexameric ring arranged as a trimer of dimers.|||Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. http://togogenome.org/gene/521674:PLIM_RS07770 ^@ http://purl.uniprot.org/uniprot/D5SW47 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/521674:PLIM_RS10065 ^@ http://purl.uniprot.org/uniprot/D5SXT6 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the radical SAM superfamily. 7-carboxy-7-deazaguanine synthase family.|||Binds 1 S-adenosyl-L-methionine per subunit.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS06475 ^@ http://purl.uniprot.org/uniprot/D5SUN4 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphoglycerate kinase family.|||Cytoplasm|||Monomer. http://togogenome.org/gene/521674:PLIM_RS06215 ^@ http://purl.uniprot.org/uniprot/D5SUI6 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Allosterically activated by fructose 1,6-bisphosphate (FBP).|||Belongs to the LDH/MDH superfamily. LDH family.|||Catalyzes the conversion of lactate to pyruvate.|||Cytoplasm|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS20435 ^@ http://purl.uniprot.org/uniprot/D5SXZ3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RNA methyltransferase RsmE family.|||Cytoplasm|||Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS11935 ^@ http://purl.uniprot.org/uniprot/D5SNN0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PNP synthase family.|||Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.|||Cytoplasm|||Homooctamer; tetramer of dimers.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS07655 ^@ http://purl.uniprot.org/uniprot/D5SW24 ^@ Similarity ^@ Belongs to the SIMIBI class G3E GTPase family. ZNG1 subfamily. http://togogenome.org/gene/521674:PLIM_RS19855 ^@ http://purl.uniprot.org/uniprot/D5SX52 ^@ Similarity ^@ Belongs to the complex I 51 kDa subunit family. http://togogenome.org/gene/521674:PLIM_RS08410 ^@ http://purl.uniprot.org/uniprot/D5SWV2 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bS1 family.|||Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. http://togogenome.org/gene/521674:PLIM_RS06855 ^@ http://purl.uniprot.org/uniprot/D5SV92 ^@ Similarity ^@ Belongs to the SOS response-associated peptidase family. http://togogenome.org/gene/521674:PLIM_RS21530 ^@ http://purl.uniprot.org/uniprot/D5SZ98 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.|||Mediates influx of magnesium ions.|||Membrane http://togogenome.org/gene/521674:PLIM_RS16940 ^@ http://purl.uniprot.org/uniprot/D5SU56 ^@ Caution|||Function|||Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.|||Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS02605 ^@ http://purl.uniprot.org/uniprot/D5SQ95 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS11 family.|||Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.|||Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3. http://togogenome.org/gene/521674:PLIM_RS11165 ^@ http://purl.uniprot.org/uniprot/D5SMT9 ^@ Similarity ^@ Belongs to the threonine aldolase family. http://togogenome.org/gene/521674:PLIM_RS22230 ^@ http://purl.uniprot.org/uniprot/D5SNT2 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS12635 ^@ http://purl.uniprot.org/uniprot/D5SPD5 ^@ Similarity ^@ Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. http://togogenome.org/gene/521674:PLIM_RS08800 ^@ http://purl.uniprot.org/uniprot/D5SXF9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS00885 ^@ http://purl.uniprot.org/uniprot/D5SNA0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase gamma chain family.|||Cell inner membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. http://togogenome.org/gene/521674:PLIM_RS13040 ^@ http://purl.uniprot.org/uniprot/D5SPY3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS21210 ^@ http://purl.uniprot.org/uniprot/D5SZ35 ^@ Cofactor|||Similarity ^@ Belongs to the PTPS family. QueD subfamily.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/521674:PLIM_RS13535 ^@ http://purl.uniprot.org/uniprot/D5SQJ5 ^@ Similarity ^@ Belongs to the FPG family. http://togogenome.org/gene/521674:PLIM_RS08740 ^@ http://purl.uniprot.org/uniprot/D5SXE9 ^@ Similarity ^@ Belongs to the DEAD box helicase family. http://togogenome.org/gene/521674:PLIM_RS03460 ^@ http://purl.uniprot.org/uniprot/D5SR27 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the ribulose-phosphate 3-epimerase family.|||Binds 1 divalent metal cation per subunit.|||Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. http://togogenome.org/gene/521674:PLIM_RS05855 ^@ http://purl.uniprot.org/uniprot/D5STY3 ^@ Caution|||Function|||Similarity ^@ Belongs to the LDH/MDH superfamily. MDH type 2 family.|||Catalyzes the reversible oxidation of malate to oxaloacetate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS09210 ^@ http://purl.uniprot.org/uniprot/D5SXP0 ^@ Similarity ^@ Belongs to the GARS family. http://togogenome.org/gene/521674:PLIM_RS12640 ^@ http://purl.uniprot.org/uniprot/D5SPD6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS04720 ^@ http://purl.uniprot.org/uniprot/D5SSK1 ^@ Function|||Similarity ^@ Belongs to the ApbE family.|||Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. http://togogenome.org/gene/521674:PLIM_RS00890 ^@ http://purl.uniprot.org/uniprot/D5SNA1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase alpha/beta chains family.|||Cell inner membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. http://togogenome.org/gene/521674:PLIM_RS11505 ^@ http://purl.uniprot.org/uniprot/D5SNE6 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the endoribonuclease YbeY family.|||Binds 1 zinc ion.|||Cytoplasm|||Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. http://togogenome.org/gene/521674:PLIM_RS10490 ^@ http://purl.uniprot.org/uniprot/D5SYS7 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the NDK family.|||Cytoplasm|||Homotetramer.|||Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. http://togogenome.org/gene/521674:PLIM_RS05290 ^@ http://purl.uniprot.org/uniprot/D5ST98 ^@ Similarity ^@ Belongs to the CobT family. http://togogenome.org/gene/521674:PLIM_RS11070 ^@ http://purl.uniprot.org/uniprot/D5SMR9 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translation factor that gates the progression of the 70S ribosomal initiation complex (IC, containing tRNA(fMet) in the P-site) into the translation elongation cycle by using a mechanism sensitive to the ATP/ADP ratio. Binds to the 70S ribosome E-site where it modulates the state of the translating ribosome during subunit translocation. ATP hydrolysis probably frees it from the ribosome, which can enter the elongation phase.|||Belongs to the ABC transporter superfamily. ABCF family. Translational throttle EttA subfamily.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. Probably contacts ribosomal proteins L1, L5, L33 and S7, the 16S and 23S rRNA and the P-site containing tRNA(fMet).|||The P-site tRNA interaction motif (PtIM domain) probably interacts with the P-site tRNA(fMet) as well as the 23S rRNA.|||The arm domain is inserted in the first ABC transporter domain. Probably contacts ribosomal protein L1. http://togogenome.org/gene/521674:PLIM_RS10575 ^@ http://purl.uniprot.org/uniprot/D5SYU3 ^@ Function|||Induction|||Similarity ^@ Acts as a chaperone.|||Belongs to the heat shock protein 70 family.|||By stress conditions e.g. heat shock. http://togogenome.org/gene/521674:PLIM_RS06795 ^@ http://purl.uniprot.org/uniprot/D5SV80 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/521674:PLIM_RS07930 ^@ http://purl.uniprot.org/uniprot/D5SW75 ^@ Function|||Similarity|||Subunit ^@ Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.|||Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS11540 ^@ http://purl.uniprot.org/uniprot/D5SNF3 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DtxR/MntR family.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS02905 ^@ http://purl.uniprot.org/uniprot/D5SQE1 ^@ Similarity ^@ Belongs to the YciI family. http://togogenome.org/gene/521674:PLIM_RS20345 ^@ http://purl.uniprot.org/uniprot/D5SXX8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS06120 ^@ http://purl.uniprot.org/uniprot/D5SU35 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the 'phage' integrase family. XerC subfamily.|||Belongs to the 'phage' integrase family. XerD subfamily.|||Cytoplasm|||Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.|||Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. http://togogenome.org/gene/521674:PLIM_RS13345 ^@ http://purl.uniprot.org/uniprot/D5SQ45 ^@ Function ^@ The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. http://togogenome.org/gene/521674:PLIM_RS14645 ^@ http://purl.uniprot.org/uniprot/D5SRI0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS14005 ^@ http://purl.uniprot.org/uniprot/D5SQT5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TatA/E family.|||Cell inner membrane|||Forms a complex with TatC.|||Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. http://togogenome.org/gene/521674:PLIM_RS13335 ^@ http://purl.uniprot.org/uniprot/D5SQ43 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the GcvH family.|||Binds 1 lipoyl cofactor covalently.|||The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. http://togogenome.org/gene/521674:PLIM_RS10585 ^@ http://purl.uniprot.org/uniprot/D5SYU5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the triosephosphate isomerase family.|||Cytoplasm|||Homodimer.|||Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P). http://togogenome.org/gene/521674:PLIM_RS14870 ^@ http://purl.uniprot.org/uniprot/D5SRZ0 ^@ Similarity ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/521674:PLIM_RS11060 ^@ http://purl.uniprot.org/uniprot/D5SMR7 ^@ Similarity ^@ Belongs to the Fur family. http://togogenome.org/gene/521674:PLIM_RS06635 ^@ http://purl.uniprot.org/uniprot/D5SUR5 ^@ Similarity ^@ Belongs to the Gfo/Idh/MocA family. Glycosyl hydrolase 109 subfamily. http://togogenome.org/gene/521674:PLIM_RS13880 ^@ http://purl.uniprot.org/uniprot/D5SQQ9 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Probable transporter of a GTP-driven Fe(2+) uptake system. http://togogenome.org/gene/521674:PLIM_RS02595 ^@ http://purl.uniprot.org/uniprot/D5SQ93 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecY/SEC61-alpha family.|||Cell inner membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.|||Membrane|||The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. http://togogenome.org/gene/521674:PLIM_RS00770 ^@ http://purl.uniprot.org/uniprot/D5SN79 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS04500 ^@ http://purl.uniprot.org/uniprot/D5SSF3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS02475 ^@ http://purl.uniprot.org/uniprot/D5SQ69 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase beta' chain family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 2 Zn(2+) ions per subunit.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription. http://togogenome.org/gene/521674:PLIM_RS08790 ^@ http://purl.uniprot.org/uniprot/D5SXF7 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. http://togogenome.org/gene/521674:PLIM_RS02600 ^@ http://purl.uniprot.org/uniprot/D5SQ94 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS13 family.|||Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.|||Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome. http://togogenome.org/gene/521674:PLIM_RS15410 ^@ http://purl.uniprot.org/uniprot/D5SS96 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.|||Belongs to the CsrA/RsmA family.|||Cytoplasm|||Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core. http://togogenome.org/gene/521674:PLIM_RS13230 ^@ http://purl.uniprot.org/uniprot/D5SQ21 ^@ Function|||Similarity ^@ Belongs to the beta-class carbonic anhydrase family.|||Reversible hydration of carbon dioxide. http://togogenome.org/gene/521674:PLIM_RS22965 ^@ http://purl.uniprot.org/uniprot/D5SQL3 ^@ Similarity ^@ Belongs to the type-I restriction system S methylase family. http://togogenome.org/gene/521674:PLIM_RS15925 ^@ http://purl.uniprot.org/uniprot/D5SSW6 ^@ Similarity ^@ Belongs to the FlgD family. http://togogenome.org/gene/521674:PLIM_RS18025 ^@ http://purl.uniprot.org/uniprot/D5SV28 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS12750 ^@ http://purl.uniprot.org/uniprot/D5SPS7 ^@ Similarity ^@ Belongs to the Dps family. http://togogenome.org/gene/521674:PLIM_RS08695 ^@ http://purl.uniprot.org/uniprot/D5SX08 ^@ Similarity ^@ Belongs to the peptidase C56 family. http://togogenome.org/gene/521674:PLIM_RS14535 ^@ http://purl.uniprot.org/uniprot/D5SRF8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the HisA/HisF family.|||Cytoplasm|||Heterodimer of HisH and HisF.|||IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. http://togogenome.org/gene/521674:PLIM_RS12495 ^@ http://purl.uniprot.org/uniprot/D5SPA7 ^@ Subunit ^@ Homodimer. http://togogenome.org/gene/521674:PLIM_RS10210 ^@ http://purl.uniprot.org/uniprot/D5SXW7 ^@ Similarity ^@ Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. http://togogenome.org/gene/521674:PLIM_RS00080 ^@ http://purl.uniprot.org/uniprot/D5SME7 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the thymidylate synthase ThyX family.|||Binds 4 FAD per tetramer. Each FAD binding site is formed by three monomers.|||Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS20110 ^@ http://purl.uniprot.org/uniprot/D5SXA2 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS12550 ^@ http://purl.uniprot.org/uniprot/D5SPB8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS11880 ^@ http://purl.uniprot.org/uniprot/D5SNL9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS12165 ^@ http://purl.uniprot.org/uniprot/D5SP42 ^@ Function|||Similarity|||Subunit ^@ Belongs to the transferase hexapeptide repeat family. LpxD subfamily.|||Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.|||Homotrimer. http://togogenome.org/gene/521674:PLIM_RS07945 ^@ http://purl.uniprot.org/uniprot/D5SW78 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ammonia transporter channel (TC 1.A.11.2) family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS13145 ^@ http://purl.uniprot.org/uniprot/D5SQ03 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RecA family.|||Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS19500 ^@ http://purl.uniprot.org/uniprot/D5SWL0 ^@ Similarity ^@ Belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily. http://togogenome.org/gene/521674:PLIM_RS17985 ^@ http://purl.uniprot.org/uniprot/D5SV20 ^@ Function|||Similarity ^@ Belongs to the glycogen phosphorylase family.|||Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. http://togogenome.org/gene/521674:PLIM_RS08840 ^@ http://purl.uniprot.org/uniprot/D5SXG7 ^@ Subunit ^@ Homodimer. http://togogenome.org/gene/521674:PLIM_RS16590 ^@ http://purl.uniprot.org/uniprot/D5STL0 ^@ Similarity ^@ Belongs to the AHA1 family. http://togogenome.org/gene/521674:PLIM_RS17600 ^@ http://purl.uniprot.org/uniprot/D5SUU8 ^@ Similarity ^@ Belongs to the asparagine synthetase family. http://togogenome.org/gene/521674:PLIM_RS11735 ^@ http://purl.uniprot.org/uniprot/D5SNI9 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the GTP cyclohydrolase II family.|||Binds 1 zinc ion per subunit.|||Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.|||Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.|||In the N-terminal section; belongs to the DHBP synthase family. http://togogenome.org/gene/521674:PLIM_RS08245 ^@ http://purl.uniprot.org/uniprot/D5SWS1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS00860 ^@ http://purl.uniprot.org/uniprot/D5SN95 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase A chain family.|||Cell inner membrane|||Cell membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.|||Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.|||Membrane http://togogenome.org/gene/521674:PLIM_RS19560 ^@ http://purl.uniprot.org/uniprot/D5SWM2 ^@ Similarity ^@ Belongs to the Orn/Lys/Arg decarboxylase class-II family. http://togogenome.org/gene/521674:PLIM_RS14230 ^@ http://purl.uniprot.org/uniprot/D5SR99 ^@ Function|||Similarity ^@ Belongs to the GHMP kinase family. IspE subfamily.|||Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. http://togogenome.org/gene/521674:PLIM_RS06950 ^@ http://purl.uniprot.org/uniprot/D5SVB1 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the queuine tRNA-ribosyltransferase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).|||Homodimer. Within each dimer, one monomer is responsible for RNA recognition and catalysis, while the other monomer binds to the replacement base PreQ1. http://togogenome.org/gene/521674:PLIM_RS13970 ^@ http://purl.uniprot.org/uniprot/D5SQS8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0187 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS04090 ^@ http://purl.uniprot.org/uniprot/D5SRT4 ^@ Function|||Similarity ^@ Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.|||Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. http://togogenome.org/gene/521674:PLIM_RS14215 ^@ http://purl.uniprot.org/uniprot/D5SR96 ^@ Similarity ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. http://togogenome.org/gene/521674:PLIM_RS20530 ^@ http://purl.uniprot.org/uniprot/D5SY10 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS16835 ^@ http://purl.uniprot.org/uniprot/D5STR0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS10320 ^@ http://purl.uniprot.org/uniprot/D5SYP4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0187 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS09195 ^@ http://purl.uniprot.org/uniprot/D5SXN7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the major facilitator superfamily. TCR/Tet family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS11075 ^@ http://purl.uniprot.org/uniprot/D5SMS0 ^@ Caution|||Function|||Similarity ^@ Belongs to the UbiX/PAD1 family.|||Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS01955 ^@ http://purl.uniprot.org/uniprot/D5SPK0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS15 family.|||Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.|||Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA. http://togogenome.org/gene/521674:PLIM_RS10605 ^@ http://purl.uniprot.org/uniprot/D5SYU9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RNA polymerase subunit omega family.|||Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.|||The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription. http://togogenome.org/gene/521674:PLIM_RS06345 ^@ http://purl.uniprot.org/uniprot/D5SUK9 ^@ Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. http://togogenome.org/gene/521674:PLIM_RS16330 ^@ http://purl.uniprot.org/uniprot/D5STG2 ^@ Function|||Similarity ^@ Belongs to the ribonucleoside diphosphate reductase class-2 family.|||Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. http://togogenome.org/gene/521674:PLIM_RS02555 ^@ http://purl.uniprot.org/uniprot/D5SQ85 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL24 family.|||One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.|||One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS22610 ^@ http://purl.uniprot.org/uniprot/D5SVE9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS22440 ^@ http://purl.uniprot.org/uniprot/D5SSL0 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS01855 ^@ http://purl.uniprot.org/uniprot/D5SPI0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the PEP-utilizing enzyme family.|||Cytoplasm|||General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr). http://togogenome.org/gene/521674:PLIM_RS03535 ^@ http://purl.uniprot.org/uniprot/D5SR41 ^@ Similarity ^@ Belongs to the peptidase S41A family. http://togogenome.org/gene/521674:PLIM_RS09405 ^@ http://purl.uniprot.org/uniprot/D5SYB5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS04810 ^@ http://purl.uniprot.org/uniprot/D5SSM0 ^@ Similarity ^@ Belongs to the NADH dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS08900 ^@ http://purl.uniprot.org/uniprot/D5SXH9 ^@ Activity Regulation|||Caution|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.|||Belongs to the CTP synthase family.|||CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.|||Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS02130 ^@ http://purl.uniprot.org/uniprot/D5SPN0 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS11480 ^@ http://purl.uniprot.org/uniprot/D5SNE1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.|||Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS08830 ^@ http://purl.uniprot.org/uniprot/D5SXG5 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the chorismate synthase family.|||Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Reduced FMN (FMNH(2)). http://togogenome.org/gene/521674:PLIM_RS00490 ^@ http://purl.uniprot.org/uniprot/D5SN19 ^@ Function|||Similarity|||Subunit ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.|||Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).|||Homotetramer. http://togogenome.org/gene/521674:PLIM_RS10685 ^@ http://purl.uniprot.org/uniprot/D5SYW5 ^@ Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. http://togogenome.org/gene/521674:PLIM_RS02535 ^@ http://purl.uniprot.org/uniprot/D5SQ81 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL16 family.|||Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS12005 ^@ http://purl.uniprot.org/uniprot/D5SNP5 ^@ Similarity ^@ Belongs to the heat shock protein 70 family. http://togogenome.org/gene/521674:PLIM_RS07720 ^@ http://purl.uniprot.org/uniprot/D5SW37 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.|||Cell membrane|||Membrane|||Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane. http://togogenome.org/gene/521674:PLIM_RS23285 ^@ http://purl.uniprot.org/uniprot/D5SWI2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS21265 ^@ http://purl.uniprot.org/uniprot/D5SZ45 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNase H family.|||Binds 1 Mg(2+) ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.|||Cytoplasm|||Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS00325 ^@ http://purl.uniprot.org/uniprot/D5SMJ6 ^@ Function|||Subunit ^@ Acetyl-CoA carboxylase is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and the two subunits of carboxyl transferase in a 2:2 complex.|||This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. http://togogenome.org/gene/521674:PLIM_RS03695 ^@ http://purl.uniprot.org/uniprot/D5SRK8 ^@ Similarity ^@ Belongs to the sigma-54 factor family. http://togogenome.org/gene/521674:PLIM_RS17270 ^@ http://purl.uniprot.org/uniprot/D5SUB9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum|||Belongs to the bacterial flagellin family.|||Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.|||Secreted http://togogenome.org/gene/521674:PLIM_RS16095 ^@ http://purl.uniprot.org/uniprot/D5SSZ7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS06235 ^@ http://purl.uniprot.org/uniprot/D5SUJ0 ^@ Similarity ^@ Belongs to the Gfo/Idh/MocA family. Glycosyl hydrolase 109 subfamily. http://togogenome.org/gene/521674:PLIM_RS10690 ^@ http://purl.uniprot.org/uniprot/D5SYW7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the adenylosuccinate synthetase family.|||Binds 1 Mg(2+) ion per subunit.|||Cytoplasm|||Homodimer.|||Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP. http://togogenome.org/gene/521674:PLIM_RS10680 ^@ http://purl.uniprot.org/uniprot/D5SYW4 ^@ Caution|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.|||Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer.|||The C-terminal coiled-coil domain is crucial for aminoacylation activity.|||ValRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated threonine is translocated from the active site to the editing site. http://togogenome.org/gene/521674:PLIM_RS13505 ^@ http://purl.uniprot.org/uniprot/D5SQJ0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PTH family.|||Cytoplasm|||Monomer.|||The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. http://togogenome.org/gene/521674:PLIM_RS06515 ^@ http://purl.uniprot.org/uniprot/D5SUP1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the DEAD box helicase family. DeaD/CsdA subfamily.|||Cytoplasm|||DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. http://togogenome.org/gene/521674:PLIM_RS11770 ^@ http://purl.uniprot.org/uniprot/D5SNJ7 ^@ Function|||Similarity ^@ Belongs to the aconitase/IPM isomerase family.|||Catalyzes the isomerization of citrate to isocitrate via cis-aconitate. http://togogenome.org/gene/521674:PLIM_RS13570 ^@ http://purl.uniprot.org/uniprot/D5SQK2 ^@ Similarity ^@ Belongs to the protease inhibitor I11 (ecotin) family. http://togogenome.org/gene/521674:PLIM_RS14075 ^@ http://purl.uniprot.org/uniprot/D5SQU9 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS18500 ^@ http://purl.uniprot.org/uniprot/D5SVQ3 ^@ Function|||Similarity ^@ Belongs to the DMRL synthase family.|||Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. http://togogenome.org/gene/521674:PLIM_RS03260 ^@ http://purl.uniprot.org/uniprot/D5SQY9 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the IspG family.|||Binds 1 [4Fe-4S] cluster.|||Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. http://togogenome.org/gene/521674:PLIM_RS12400 ^@ http://purl.uniprot.org/uniprot/D5SP88 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the succinate/malate CoA ligase beta subunit family.|||Binds 1 Mg(2+) ion per subunit.|||Heterotetramer of two alpha and two beta subunits.|||Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. http://togogenome.org/gene/521674:PLIM_RS15230 ^@ http://purl.uniprot.org/uniprot/D5SS61 ^@ Similarity ^@ Belongs to the threonine synthase family. http://togogenome.org/gene/521674:PLIM_RS16150 ^@ http://purl.uniprot.org/uniprot/D5ST08 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS01650 ^@ http://purl.uniprot.org/uniprot/D5SP17 ^@ Function|||Similarity|||Subunit ^@ Belongs to the LeuD family. LeuD type 1 subfamily.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/521674:PLIM_RS06980 ^@ http://purl.uniprot.org/uniprot/D5SVB7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS23245 ^@ http://purl.uniprot.org/uniprot/D5SVQ1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CoaE family.|||Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS04895 ^@ http://purl.uniprot.org/uniprot/D5ST19 ^@ Function ^@ Condensation of UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. http://togogenome.org/gene/521674:PLIM_RS21380 ^@ http://purl.uniprot.org/uniprot/D5SZ72 ^@ Caution|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the argininosuccinate synthase family. Type 1 subfamily.|||Cytoplasm|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS12580 ^@ http://purl.uniprot.org/uniprot/D5SPC4 ^@ Caution|||Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS01245 ^@ http://purl.uniprot.org/uniprot/D5SNU2 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase TruD family.|||Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs. http://togogenome.org/gene/521674:PLIM_RS14220 ^@ http://purl.uniprot.org/uniprot/D5SR97 ^@ Cofactor|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.|||Binds 1 pyridoxal phosphate per subunit.|||Cytoplasm|||Homodimer.|||May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis. http://togogenome.org/gene/521674:PLIM_RS08905 ^@ http://purl.uniprot.org/uniprot/D5SXI0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.|||Belongs to the KdsB family.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS03750 ^@ http://purl.uniprot.org/uniprot/D5SRL9 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS16970 ^@ http://purl.uniprot.org/uniprot/D5SU62 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).|||Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS11830 ^@ http://purl.uniprot.org/uniprot/D5SNK9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the 6-phosphogluconate dehydrogenase family.|||Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS06650 ^@ http://purl.uniprot.org/uniprot/D5SUR9 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the xylose isomerase family.|||Binds 2 magnesium ions per subunit.|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/521674:PLIM_RS13510 ^@ http://purl.uniprot.org/uniprot/D5SQJ1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.|||Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.|||This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. http://togogenome.org/gene/521674:PLIM_RS19790 ^@ http://purl.uniprot.org/uniprot/D5SX38 ^@ Similarity ^@ Belongs to the SAICAR synthetase family. http://togogenome.org/gene/521674:PLIM_RS07235 ^@ http://purl.uniprot.org/uniprot/D5SVG3 ^@ Similarity ^@ Belongs to the metallophosphoesterase superfamily. YfcE family. http://togogenome.org/gene/521674:PLIM_RS15200 ^@ http://purl.uniprot.org/uniprot/D5SS56 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome c oxidase subunit 2 family.|||Binds a copper A center.|||Cell membrane|||Membrane|||Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). http://togogenome.org/gene/521674:PLIM_RS06075 ^@ http://purl.uniprot.org/uniprot/D5SU27 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/521674:PLIM_RS11705 ^@ http://purl.uniprot.org/uniprot/D5SNI3 ^@ Similarity ^@ Belongs to the peptidase A24 family. http://togogenome.org/gene/521674:PLIM_RS08665 ^@ http://purl.uniprot.org/uniprot/D5SX01 ^@ Similarity ^@ Belongs to the aldehyde dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS15305 ^@ http://purl.uniprot.org/uniprot/D5SS74 ^@ Similarity ^@ Belongs to the intimin/invasin family. http://togogenome.org/gene/521674:PLIM_RS19825 ^@ http://purl.uniprot.org/uniprot/D5SX46 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 3 family.|||Cell membrane|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. http://togogenome.org/gene/521674:PLIM_RS21410 ^@ http://purl.uniprot.org/uniprot/D5SZ78 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SmpB family.|||Cytoplasm|||Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation. http://togogenome.org/gene/521674:PLIM_RS01700 ^@ http://purl.uniprot.org/uniprot/D5SP26 ^@ Similarity ^@ Belongs to the peptidase C56 family. http://togogenome.org/gene/521674:PLIM_RS06130 ^@ http://purl.uniprot.org/uniprot/D5SU37 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SurE nucleotidase family.|||Binds 1 divalent metal cation per subunit.|||Cytoplasm|||Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates. http://togogenome.org/gene/521674:PLIM_RS15195 ^@ http://purl.uniprot.org/uniprot/D5SS55 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the heme-copper respiratory oxidase family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS06605 ^@ http://purl.uniprot.org/uniprot/D5SUQ9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS11775 ^@ http://purl.uniprot.org/uniprot/D5SNJ8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the protoporphyrinogen/coproporphyrinogen oxidase family. Coproporphyrinogen III oxidase subfamily.|||Cytoplasm|||Involved in coproporphyrin-dependent heme b biosynthesis. Catalyzes the oxidation of coproporphyrinogen III to coproporphyrin III. http://togogenome.org/gene/521674:PLIM_RS12900 ^@ http://purl.uniprot.org/uniprot/D5SPV4 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bL20 family.|||Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. http://togogenome.org/gene/521674:PLIM_RS14885 ^@ http://purl.uniprot.org/uniprot/D5SRZ4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the NnrE/AIBP family.|||Binds 1 potassium ion per subunit.|||Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX. http://togogenome.org/gene/521674:PLIM_RS22805 ^@ http://purl.uniprot.org/uniprot/D5SYV1 ^@ Similarity ^@ Belongs to the UPF0162 family. http://togogenome.org/gene/521674:PLIM_RS12795 ^@ http://purl.uniprot.org/uniprot/D5SPT5 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.|||Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS16035 ^@ http://purl.uniprot.org/uniprot/D5SSY7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family.|||Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis.|||Homotetramer. http://togogenome.org/gene/521674:PLIM_RS11010 ^@ http://purl.uniprot.org/uniprot/D5SMQ8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'-UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.|||Belongs to the CsrA/RsmA family.|||Cytoplasm|||Homodimer; the beta-strands of each monomer intercalate to form a hydrophobic core, while the alpha-helices form wings that extend away from the core. http://togogenome.org/gene/521674:PLIM_RS03985 ^@ http://purl.uniprot.org/uniprot/D5SRR5 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS14045 ^@ http://purl.uniprot.org/uniprot/D5SQU3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the GroES chaperonin family.|||Heptamer of 7 subunits arranged in a ring.|||Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel. http://togogenome.org/gene/521674:PLIM_RS12305 ^@ http://purl.uniprot.org/uniprot/D5SP71 ^@ Similarity ^@ Belongs to the ABC transporter superfamily. Ycf16 family. http://togogenome.org/gene/521674:PLIM_RS10635 ^@ http://purl.uniprot.org/uniprot/D5SYV5 ^@ Similarity ^@ Belongs to the KHG/KDPG aldolase family. http://togogenome.org/gene/521674:PLIM_RS04660 ^@ http://purl.uniprot.org/uniprot/D5SSI9 ^@ Function|||Similarity ^@ Belongs to the sigma-70 factor family.|||Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. http://togogenome.org/gene/521674:PLIM_RS00910 ^@ http://purl.uniprot.org/uniprot/D5SNA5 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bS16 family. http://togogenome.org/gene/521674:PLIM_RS14890 ^@ http://purl.uniprot.org/uniprot/D5SRZ5 ^@ Similarity ^@ Belongs to the ParB family. http://togogenome.org/gene/521674:PLIM_RS11510 ^@ http://purl.uniprot.org/uniprot/D5SNE7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS22975 ^@ http://purl.uniprot.org/uniprot/D5SQR3 ^@ Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the flagella basal body rod proteins family. http://togogenome.org/gene/521674:PLIM_RS22240 ^@ http://purl.uniprot.org/uniprot/D5SP11 ^@ Similarity ^@ Belongs to the PspA/IM30 family. http://togogenome.org/gene/521674:PLIM_RS22450 ^@ http://purl.uniprot.org/uniprot/D5ST31 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS17465 ^@ http://purl.uniprot.org/uniprot/D5SUF7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS09120 ^@ http://purl.uniprot.org/uniprot/D5SXM2 ^@ Caution|||Function|||Similarity ^@ Belongs to the GART family.|||Catalyzes the transfer of a formyl group from 10-formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS19895 ^@ http://purl.uniprot.org/uniprot/D5SX60 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 2 family.|||Cell inner membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS07465 ^@ http://purl.uniprot.org/uniprot/D5SVY9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.|||CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.|||Homodimer, forms a heterotetramer with a Cas1 homodimer. http://togogenome.org/gene/521674:PLIM_RS13855 ^@ http://purl.uniprot.org/uniprot/D5SQQ5 ^@ Similarity ^@ Belongs to the glutamate synthase family. http://togogenome.org/gene/521674:PLIM_RS18805 ^@ http://purl.uniprot.org/uniprot/D5SVW0 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. http://togogenome.org/gene/521674:PLIM_RS09250 ^@ http://purl.uniprot.org/uniprot/D5SXP7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Bacterial microcompartment|||Belongs to the EutC family.|||Binds between the large and small subunits.|||Catalyzes the deamination of various vicinal amino-alcohols to oxo compounds. Allows this organism to utilize ethanolamine as the sole source of nitrogen and carbon in the presence of external vitamin B12.|||The basic unit is a heterodimer which dimerizes to form tetramers. The heterotetramers trimerize; 6 large subunits form a core ring with 6 small subunits projecting outwards. http://togogenome.org/gene/521674:PLIM_RS02800 ^@ http://purl.uniprot.org/uniprot/D5SQC0 ^@ Similarity ^@ Belongs to the sigma-70 factor family. ECF subfamily. http://togogenome.org/gene/521674:PLIM_RS16410 ^@ http://purl.uniprot.org/uniprot/D5STH8 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.|||Belongs to the EF-Ts family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS11290 ^@ http://purl.uniprot.org/uniprot/D5SMW6 ^@ Similarity ^@ Belongs to the TrpC family. http://togogenome.org/gene/521674:PLIM_RS14030 ^@ http://purl.uniprot.org/uniprot/D5SQU0 ^@ Function|||Similarity ^@ Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.|||Belongs to the Fmt family. http://togogenome.org/gene/521674:PLIM_RS18430 ^@ http://purl.uniprot.org/uniprot/D5SVN8 ^@ Similarity ^@ Belongs to the heat shock protein 70 family. http://togogenome.org/gene/521674:PLIM_RS11720 ^@ http://purl.uniprot.org/uniprot/D5SNI6 ^@ Similarity ^@ Belongs to the P(II) protein family. http://togogenome.org/gene/521674:PLIM_RS12590 ^@ http://purl.uniprot.org/uniprot/D5SPC6 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the RuvC family.|||Binds 1 Mg(2+) ion per subunit.|||Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. http://togogenome.org/gene/521674:PLIM_RS02040 ^@ http://purl.uniprot.org/uniprot/D5SPL3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Mrp/NBP35 ATP-binding proteins family.|||Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.|||Homodimer.|||In the C-terminal section; belongs to the Mrp/NBP35 ATP-binding proteins family.|||In the N-terminal section; belongs to the MIP18 family. http://togogenome.org/gene/521674:PLIM_RS11300 ^@ http://purl.uniprot.org/uniprot/D5SMW8 ^@ Similarity ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. http://togogenome.org/gene/521674:PLIM_RS09635 ^@ http://purl.uniprot.org/uniprot/D5SYF9 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SUA5 family.|||Cytoplasm|||Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. http://togogenome.org/gene/521674:PLIM_RS02485 ^@ http://purl.uniprot.org/uniprot/D5SQ71 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS7 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA.|||Part of the 30S ribosomal subunit. Contacts proteins S9 and S11. http://togogenome.org/gene/521674:PLIM_RS00135 ^@ http://purl.uniprot.org/uniprot/D5SMF7 ^@ Similarity ^@ Belongs to the SUI1 family. http://togogenome.org/gene/521674:PLIM_RS07915 ^@ http://purl.uniprot.org/uniprot/D5SW72 ^@ Similarity ^@ Belongs to the peptidase C56 family. http://togogenome.org/gene/521674:PLIM_RS23155 ^@ http://purl.uniprot.org/uniprot/D5SU93 ^@ Similarity ^@ Belongs to the barstar family. http://togogenome.org/gene/521674:PLIM_RS09715 ^@ http://purl.uniprot.org/uniprot/D5SYH6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS08805 ^@ http://purl.uniprot.org/uniprot/D5SXG0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS00665 ^@ http://purl.uniprot.org/uniprot/D5SN57 ^@ Function|||Similarity|||Subunit ^@ Belongs to the MoaC family.|||Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).|||Homohexamer; trimer of dimers. http://togogenome.org/gene/521674:PLIM_RS13720 ^@ http://purl.uniprot.org/uniprot/D5SQN2 ^@ Function|||Similarity|||Subunit ^@ Catalyzes the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer).|||Homodimer.|||In the C-terminal section; belongs to the MurCDEF family. http://togogenome.org/gene/521674:PLIM_RS20540 ^@ http://purl.uniprot.org/uniprot/D5SY12 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the GPI family.|||Catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS13490 ^@ http://purl.uniprot.org/uniprot/D5SQI7 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bL9 family.|||Binds to the 23S rRNA. http://togogenome.org/gene/521674:PLIM_RS00870 ^@ http://purl.uniprot.org/uniprot/D5SN97 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase B chain family.|||Cell inner membrane|||Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).|||F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.|||F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane http://togogenome.org/gene/521674:PLIM_RS06990 ^@ http://purl.uniprot.org/uniprot/D5SVB9 ^@ Function|||Similarity ^@ Belongs to the UxaE family.|||Catalyzes the epimerization of D-tagaturonate (D-TagA) to D-fructuronate (D-FruA). http://togogenome.org/gene/521674:PLIM_RS24540 ^@ http://purl.uniprot.org/uniprot/D5SYE3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase A24 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS03355 ^@ http://purl.uniprot.org/uniprot/D5SR08 ^@ Similarity ^@ Belongs to the pirin family. http://togogenome.org/gene/521674:PLIM_RS12695 ^@ http://purl.uniprot.org/uniprot/D5SPE7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS11100 ^@ http://purl.uniprot.org/uniprot/D5SMS5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the class II fructose-bisphosphate aldolase family.|||Binds 2 Zn(2+) ions per subunit. One is catalytic and the other provides a structural contribution.|||Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. http://togogenome.org/gene/521674:PLIM_RS18140 ^@ http://purl.uniprot.org/uniprot/D5SV54 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MscL family.|||Cell inner membrane|||Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.|||Homopentamer.|||Membrane http://togogenome.org/gene/521674:PLIM_RS13805 ^@ http://purl.uniprot.org/uniprot/D5SQP8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome ubiquinol oxidase subunit 2 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS06925 ^@ http://purl.uniprot.org/uniprot/D5SVA6 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS13380 ^@ http://purl.uniprot.org/uniprot/D5SQ52 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the enolase family.|||Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.|||Cell surface|||Cytoplasm|||Secreted|||The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein. http://togogenome.org/gene/521674:PLIM_RS13220 ^@ http://purl.uniprot.org/uniprot/D5SQ19 ^@ Similarity ^@ Belongs to the oxoprolinase family. http://togogenome.org/gene/521674:PLIM_RS07295 ^@ http://purl.uniprot.org/uniprot/D5SVH4 ^@ Similarity ^@ Belongs to the disproportionating enzyme family. http://togogenome.org/gene/521674:PLIM_RS09245 ^@ http://purl.uniprot.org/uniprot/D5SXP6 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Bacterial microcompartment|||Belongs to the EutB family.|||Binds between the large and small subunits.|||Catalyzes the deamination of various vicinal amino-alcohols to oxo compounds. Allows this organism to utilize ethanolamine as the sole source of nitrogen and carbon in the presence of vitamin B12.|||The basic unit is a heterodimer which dimerizes to form tetramers. The heterotetramers trimerize; 6 large subunits form a core ring with 6 small subunits projecting outwards. http://togogenome.org/gene/521674:PLIM_RS02285 ^@ http://purl.uniprot.org/uniprot/D5SPQ5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.|||Cytoplasm|||Monomer.|||This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. http://togogenome.org/gene/521674:PLIM_RS03860 ^@ http://purl.uniprot.org/uniprot/D5SRN7 ^@ Function|||Similarity ^@ Belongs to the RecO family.|||Involved in DNA repair and RecF pathway recombination. http://togogenome.org/gene/521674:PLIM_RS04235 ^@ http://purl.uniprot.org/uniprot/D5SRW2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS15550 ^@ http://purl.uniprot.org/uniprot/D5SSP8 ^@ Similarity ^@ Belongs to the heat shock protein 70 family. http://togogenome.org/gene/521674:PLIM_RS12575 ^@ http://purl.uniprot.org/uniprot/D5SPC3 ^@ Similarity ^@ Belongs to the FPP/GGPP synthase family. http://togogenome.org/gene/521674:PLIM_RS13280 ^@ http://purl.uniprot.org/uniprot/D5SQ33 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the MotA family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS08635 ^@ http://purl.uniprot.org/uniprot/D5SWZ5 ^@ Similarity ^@ Belongs to the LysR transcriptional regulatory family. http://togogenome.org/gene/521674:PLIM_RS10695 ^@ http://purl.uniprot.org/uniprot/D5SYW8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the DedA family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS14530 ^@ http://purl.uniprot.org/uniprot/D5SRF7 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M48 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/521674:PLIM_RS03340 ^@ http://purl.uniprot.org/uniprot/D5SR04 ^@ Similarity ^@ Belongs to the heat shock protein 70 family. http://togogenome.org/gene/521674:PLIM_RS15185 ^@ http://purl.uniprot.org/uniprot/D5SS53 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.|||Carbon 2 of the heme B porphyrin ring is defined according to the Fischer nomenclature.|||Cell inner membrane|||Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.|||Membrane http://togogenome.org/gene/521674:PLIM_RS01590 ^@ http://purl.uniprot.org/uniprot/D5SP04 ^@ Function|||Similarity ^@ Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.|||Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. http://togogenome.org/gene/521674:PLIM_RS16405 ^@ http://purl.uniprot.org/uniprot/D5STH7 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UMP kinase family.|||Catalyzes the reversible phosphorylation of UMP to UDP.|||Cytoplasm|||Homohexamer.|||Inhibited by UTP.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS14440 ^@ http://purl.uniprot.org/uniprot/D5SRD9 ^@ Function|||Similarity ^@ Belongs to the MqnA/MqnD family. MqnA subfamily.|||Catalyzes the dehydration of chorismate into 3-[(1-carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2). http://togogenome.org/gene/521674:PLIM_RS12815 ^@ http://purl.uniprot.org/uniprot/D5SPT8 ^@ Function|||Similarity ^@ Belongs to the GreA/GreB family.|||Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. http://togogenome.org/gene/521674:PLIM_RS18565 ^@ http://purl.uniprot.org/uniprot/D5SVR6 ^@ Similarity ^@ Belongs to the cytidine and deoxycytidylate deaminase family. http://togogenome.org/gene/521674:PLIM_RS12570 ^@ http://purl.uniprot.org/uniprot/D5SPC2 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the transketolase family. DXPS subfamily.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 thiamine pyrophosphate per subunit.|||Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS15045 ^@ http://purl.uniprot.org/uniprot/D5SS26 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the chaperonin (HSP60) family.|||Cytoplasm|||Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.|||Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. http://togogenome.org/gene/521674:PLIM_RS07570 ^@ http://purl.uniprot.org/uniprot/D5SW09 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS08465 ^@ http://purl.uniprot.org/uniprot/D5SWW3 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PanB family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.|||Cytoplasm|||Homodecamer; pentamer of dimers. http://togogenome.org/gene/521674:PLIM_RS18225 ^@ http://purl.uniprot.org/uniprot/D5SV69 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS20515 ^@ http://purl.uniprot.org/uniprot/D5SY07 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytochrome c oxidase subunit 2 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS10715 ^@ http://purl.uniprot.org/uniprot/D5SYX2 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.|||Binds 1 pyridoxal phosphate per subunit.|||Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS11695 ^@ http://purl.uniprot.org/uniprot/D5SNI1 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.|||Binds 2 Zn(2+) ions per subunit.|||Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS24525 ^@ http://purl.uniprot.org/uniprot/D5SSG1 ^@ Similarity ^@ Belongs to the MoaD family. http://togogenome.org/gene/521674:PLIM_RS13275 ^@ http://purl.uniprot.org/uniprot/D5SQ32 ^@ Similarity ^@ Belongs to the MotB family. http://togogenome.org/gene/521674:PLIM_RS12605 ^@ http://purl.uniprot.org/uniprot/D5SPC9 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the IspF family.|||Binds 1 divalent metal cation per subunit.|||Homotrimer.|||Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS11640 ^@ http://purl.uniprot.org/uniprot/D5SNH1 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.|||Binds 1 Mn(2+) ion per subunit.|||Cytoplasm|||Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. http://togogenome.org/gene/521674:PLIM_RS07470 ^@ http://purl.uniprot.org/uniprot/D5SVZ0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CRISPR-associated endonuclease Cas1 family.|||CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.|||Homodimer, forms a heterotetramer with a Cas2 homodimer. http://togogenome.org/gene/521674:PLIM_RS04510 ^@ http://purl.uniprot.org/uniprot/D5SSF4 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the flotillin-like FloA family.|||Cell membrane|||Found in functional membrane microdomains (FMM) that may be equivalent to eukaryotic membrane rafts FMMs are highly dynamic and increase in number as cells age. Flotillins are thought to be important factors in membrane fluidity.|||Homooligomerizes.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane raft http://togogenome.org/gene/521674:PLIM_RS14685 ^@ http://purl.uniprot.org/uniprot/D5SRI9 ^@ Similarity ^@ Belongs to the anti-sigma-factor antagonist family. http://togogenome.org/gene/521674:PLIM_RS16920 ^@ http://purl.uniprot.org/uniprot/D5SU52 ^@ Function|||Similarity ^@ Belongs to the dTDP-4-dehydrorhamnose reductase family.|||Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. http://togogenome.org/gene/521674:PLIM_RS11315 ^@ http://purl.uniprot.org/uniprot/D5SMX1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the type IA topoisomerase family.|||Monomer.|||Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone. http://togogenome.org/gene/521674:PLIM_RS07195 ^@ http://purl.uniprot.org/uniprot/D5SVF5 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the type III secretion exporter family.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin. http://togogenome.org/gene/521674:PLIM_RS08210 ^@ http://purl.uniprot.org/uniprot/D5SWR6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS12395 ^@ http://purl.uniprot.org/uniprot/D5SP87 ^@ Function|||Similarity|||Subunit ^@ Belongs to the succinate/malate CoA ligase alpha subunit family.|||Heterotetramer of two alpha and two beta subunits.|||Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. http://togogenome.org/gene/521674:PLIM_RS00905 ^@ http://purl.uniprot.org/uniprot/D5SNA4 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA methyltransferase TrmD family.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Specifically methylates guanosine-37 in various tRNAs. http://togogenome.org/gene/521674:PLIM_RS21735 ^@ http://purl.uniprot.org/uniprot/D5SN07 ^@ Similarity ^@ Belongs to the pterin-4-alpha-carbinolamine dehydratase family. http://togogenome.org/gene/521674:PLIM_RS02750 ^@ http://purl.uniprot.org/uniprot/D5SQB1 ^@ Similarity ^@ Belongs to the peptidase S51 family. http://togogenome.org/gene/521674:PLIM_RS11645 ^@ http://purl.uniprot.org/uniprot/D5SNH2 ^@ Similarity ^@ Belongs to the cytochrome P450 family. http://togogenome.org/gene/521674:PLIM_RS03835 ^@ http://purl.uniprot.org/uniprot/D5SRN4 ^@ Function|||Similarity ^@ Belongs to the FGGY kinase family.|||Catalyzes the phosphorylation of D-xylulose to D-xylulose 5-phosphate. http://togogenome.org/gene/521674:PLIM_RS06135 ^@ http://purl.uniprot.org/uniprot/D5SU38 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS20310 ^@ http://purl.uniprot.org/uniprot/D5SXX2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Bacterial flagellum basal body|||Belongs to the flagella basal body rod proteins family.|||Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.|||The basal body constitutes a major portion of the flagellar organelle and consists of a number of rings mounted on a central rod. http://togogenome.org/gene/521674:PLIM_RS16990 ^@ http://purl.uniprot.org/uniprot/D5SU66 ^@ Similarity ^@ Belongs to the trans-sulfuration enzymes family. http://togogenome.org/gene/521674:PLIM_RS12990 ^@ http://purl.uniprot.org/uniprot/D5SPX4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GroES chaperonin family.|||Cytoplasm|||Heptamer of 7 subunits arranged in a ring. Interacts with the chaperonin GroEL.|||Together with the chaperonin GroEL, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding. GroES binds to the apical surface of the GroEL ring, thereby capping the opening of the GroEL channel. http://togogenome.org/gene/521674:PLIM_RS09690 ^@ http://purl.uniprot.org/uniprot/D5SYH0 ^@ Similarity ^@ Belongs to the aldehyde dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS13440 ^@ http://purl.uniprot.org/uniprot/D5SQH7 ^@ Similarity ^@ Belongs to the asparagine synthetase family. http://togogenome.org/gene/521674:PLIM_RS07800 ^@ http://purl.uniprot.org/uniprot/D5SW52 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS12190 ^@ http://purl.uniprot.org/uniprot/D5SP48 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the glycosyltransferase group 1 family.|||Cell membrane|||Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP-Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A. http://togogenome.org/gene/521674:PLIM_RS07850 ^@ http://purl.uniprot.org/uniprot/D5SW61 ^@ Similarity ^@ Belongs to the tRNA(His) guanylyltransferase family. http://togogenome.org/gene/521674:PLIM_RS11815 ^@ http://purl.uniprot.org/uniprot/D5SNK6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS02735 ^@ http://purl.uniprot.org/uniprot/D5SQA9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS16740 ^@ http://purl.uniprot.org/uniprot/D5STP0 ^@ Similarity ^@ Belongs to the cysteine synthase/cystathionine beta-synthase family. http://togogenome.org/gene/521674:PLIM_RS01905 ^@ http://purl.uniprot.org/uniprot/D5SPJ0 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the PAPS reductase family. CysH subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the formation of sulfite from adenosine 5'-phosphosulfate (APS) using thioredoxin as an electron donor.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS02325 ^@ http://purl.uniprot.org/uniprot/D5SPR2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL12 family.|||Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation.|||Homodimer. Part of the ribosomal stalk of the 50S ribosomal subunit. Forms a multimeric L10(L12)X complex, where L10 forms an elongated spine to which 2 to 4 L12 dimers bind in a sequential fashion. Binds GTP-bound translation factors. http://togogenome.org/gene/521674:PLIM_RS16890 ^@ http://purl.uniprot.org/uniprot/D5SU46 ^@ Subcellular Location Annotation ^@ Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS06695 ^@ http://purl.uniprot.org/uniprot/D5SUS8 ^@ Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the glutamyl-tRNA reductase family.|||Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).|||During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.|||Homodimer.|||Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization. http://togogenome.org/gene/521674:PLIM_RS00255 ^@ http://purl.uniprot.org/uniprot/D5SMI1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS20065 ^@ http://purl.uniprot.org/uniprot/D5SX94 ^@ Similarity ^@ Belongs to the Cob(I)alamin adenosyltransferase family. http://togogenome.org/gene/521674:PLIM_RS12220 ^@ http://purl.uniprot.org/uniprot/D5SP53 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS13770 ^@ http://purl.uniprot.org/uniprot/D5SQP1 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TatC family.|||Cell inner membrane|||Forms a complex with TatA.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane|||Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. http://togogenome.org/gene/521674:PLIM_RS14785 ^@ http://purl.uniprot.org/uniprot/D5SRX7 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acts as a magnesium transporter.|||Belongs to the SLC41A transporter family.|||Cell membrane|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane http://togogenome.org/gene/521674:PLIM_RS06430 ^@ http://purl.uniprot.org/uniprot/D5SUM6 ^@ Caution|||Function|||Miscellaneous|||Similarity ^@ Belongs to the thiamine-monophosphate kinase family.|||Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate. http://togogenome.org/gene/521674:PLIM_RS17415 ^@ http://purl.uniprot.org/uniprot/D5SUE7 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS11760 ^@ http://purl.uniprot.org/uniprot/D5SNJ4 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).|||Belongs to the GatB/GatE family. GatB subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/521674:PLIM_RS19270 ^@ http://purl.uniprot.org/uniprot/D5SWG6 ^@ Similarity ^@ Belongs to the FKBP-type PPIase family. http://togogenome.org/gene/521674:PLIM_RS19715 ^@ http://purl.uniprot.org/uniprot/D5SX22 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the transaldolase family. Type 2 subfamily.|||Cytoplasm|||Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway. http://togogenome.org/gene/521674:PLIM_RS09940 ^@ http://purl.uniprot.org/uniprot/D5SYL9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS14675 ^@ http://purl.uniprot.org/uniprot/D5SRI6 ^@ Similarity ^@ Belongs to the Gfo/Idh/MocA family. Glycosyl hydrolase 109 subfamily. http://togogenome.org/gene/521674:PLIM_RS16640 ^@ http://purl.uniprot.org/uniprot/D5STM1 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the IlvD/Edd family.|||Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.|||Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS07705 ^@ http://purl.uniprot.org/uniprot/D5SW34 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PhoU family.|||Cytoplasm|||Homodimer.|||Plays a role in the regulation of phosphate uptake. http://togogenome.org/gene/521674:PLIM_RS09110 ^@ http://purl.uniprot.org/uniprot/D5SXM0 ^@ Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Bacterial microcompartment|||Belongs to the PduL family.|||Formed by 2 beta-barrels, each is capped on both ends by short alpha-helices.|||Full-length protein forms large oligomers. Possible homotrimer and monomer, when purified in the absence of the encapsulation peptide (EP, residues 1-20). The EP may influence oligomerization.|||Part of a bacterial microcompartment (BMC) locus required for growth on plant and algal sugars, including L-fucose and L-rhamnose (PubMed:24487526). Thought to be active on lactyl-CoA in a lactaldehyde-degradation pathway (Probable). CoA is regenerated within the BMC via this enzyme, although there must also be cofactor transport across the BMC. Directly targeted to the BMC (Probable).|||There are 2 Zn(2+) ions per monomer; Zn(2+) and CoA bind inbetween the 2 domains in each monomer. http://togogenome.org/gene/521674:PLIM_RS20315 ^@ http://purl.uniprot.org/uniprot/D5SXX3 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Bacterial flagellum basal body|||Belongs to the flagella basal body rod proteins family.|||The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod. The rod consists of about 26 subunits of FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to build up the proximal portion of the rod with about 6 subunits each. http://togogenome.org/gene/521674:PLIM_RS00260 ^@ http://purl.uniprot.org/uniprot/D5SMI2 ^@ Similarity ^@ Belongs to the DprA/Smf family. http://togogenome.org/gene/521674:PLIM_RS08615 ^@ http://purl.uniprot.org/uniprot/D5SWZ1 ^@ Function|||Similarity ^@ ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.|||Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily. http://togogenome.org/gene/521674:PLIM_RS06540 ^@ http://purl.uniprot.org/uniprot/D5SUP6 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.|||In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS00895 ^@ http://purl.uniprot.org/uniprot/D5SNA2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase epsilon chain family.|||Cell inner membrane|||F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/521674:PLIM_RS08425 ^@ http://purl.uniprot.org/uniprot/D5SWV5 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.|||Belongs to the AAA ATPase family.|||Binds 1 zinc ion per subunit.|||Cell inner membrane|||Homohexamer.|||In the C-terminal section; belongs to the peptidase M41 family.|||In the central section; belongs to the AAA ATPase family. http://togogenome.org/gene/521674:PLIM_RS18175 ^@ http://purl.uniprot.org/uniprot/D5SV60 ^@ Function|||Similarity|||Subunit ^@ Belongs to the 2-oxoacid dehydrogenase family.|||Forms a 24-polypeptide structural core with octahedral symmetry.|||The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). http://togogenome.org/gene/521674:PLIM_RS11885 ^@ http://purl.uniprot.org/uniprot/D5SNM0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS07900 ^@ http://purl.uniprot.org/uniprot/D5SW69 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAD kinase family.|||Cytoplasm|||Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS13430 ^@ http://purl.uniprot.org/uniprot/D5SQH5 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phosphofructokinase type A (PFKA) family. PPi-dependent PFK group II subfamily. Clade 'B2' sub-subfamily.|||Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Non-allosteric. http://togogenome.org/gene/521674:PLIM_RS15025 ^@ http://purl.uniprot.org/uniprot/D5SS22 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GrpE family.|||Cytoplasm|||Homodimer.|||Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. http://togogenome.org/gene/521674:PLIM_RS07785 ^@ http://purl.uniprot.org/uniprot/D5SW49 ^@ Similarity ^@ Belongs to the heat shock protein 70 family. http://togogenome.org/gene/521674:PLIM_RS12200 ^@ http://purl.uniprot.org/uniprot/D5SP50 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecA family.|||Cell inner membrane|||Cytoplasm|||Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.|||Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. http://togogenome.org/gene/521674:PLIM_RS22760 ^@ http://purl.uniprot.org/uniprot/D5SXU6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS00915 ^@ http://purl.uniprot.org/uniprot/D5SNA6 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. SRP54 subfamily.|||Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. http://togogenome.org/gene/521674:PLIM_RS05815 ^@ http://purl.uniprot.org/uniprot/D5STX5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase S26 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS13135 ^@ http://purl.uniprot.org/uniprot/D5SQ01 ^@ Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.|||Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS23260 ^@ http://purl.uniprot.org/uniprot/D5SVU1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GSP K family.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS04210 ^@ http://purl.uniprot.org/uniprot/D5SRV7 ^@ Similarity ^@ Belongs to the peptidase A24 family. http://togogenome.org/gene/521674:PLIM_RS11365 ^@ http://purl.uniprot.org/uniprot/D5SMY0 ^@ Caution|||Function|||Similarity ^@ Belongs to the thymidylate kinase family.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis. http://togogenome.org/gene/521674:PLIM_RS02320 ^@ http://purl.uniprot.org/uniprot/D5SPR1 ^@ Similarity ^@ Belongs to the universal ribosomal protein uL10 family. http://togogenome.org/gene/521674:PLIM_RS16395 ^@ http://purl.uniprot.org/uniprot/D5STH5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpA family.|||Tetramer of two alpha and two beta chains.|||The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. http://togogenome.org/gene/521674:PLIM_RS12310 ^@ http://purl.uniprot.org/uniprot/D5SP72 ^@ Similarity ^@ Belongs to the UPF0051 (ycf24) family. http://togogenome.org/gene/521674:PLIM_RS22205 ^@ http://purl.uniprot.org/uniprot/D5SND8 ^@ Cofactor|||Domain|||Function|||Similarity|||Subunit ^@ Belongs to the DnaG primase family.|||Binds 1 zinc ion per monomer.|||Contains an N-terminal zinc-binding domain, a central core domain that contains the primase activity, and a C-terminal DnaB-binding domain.|||Monomer. Interacts with DnaB.|||RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. http://togogenome.org/gene/521674:PLIM_RS12475 ^@ http://purl.uniprot.org/uniprot/D5SPA2 ^@ Similarity ^@ Belongs to the PEP-utilizing enzyme family. http://togogenome.org/gene/521674:PLIM_RS07040 ^@ http://purl.uniprot.org/uniprot/D5SVC8 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase A8 family.|||Cell inner membrane|||Lacks conserved residue(s) required for the propagation of feature annotation.|||This protein specifically catalyzes the removal of signal peptides from prolipoproteins. http://togogenome.org/gene/521674:PLIM_RS12520 ^@ http://purl.uniprot.org/uniprot/D5SPB2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the RuvB family.|||Forms a complex with RuvA.|||The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. http://togogenome.org/gene/521674:PLIM_RS02150 ^@ http://purl.uniprot.org/uniprot/D5SPN3 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. http://togogenome.org/gene/521674:PLIM_RS11715 ^@ http://purl.uniprot.org/uniprot/D5SNI5 ^@ Similarity ^@ Belongs to the P(II) protein family. http://togogenome.org/gene/521674:PLIM_RS05920 ^@ http://purl.uniprot.org/uniprot/D5STZ4 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/521674:PLIM_RS04850 ^@ http://purl.uniprot.org/uniprot/D5SSM9 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS15325 ^@ http://purl.uniprot.org/uniprot/D5SS78 ^@ Function|||Similarity ^@ Belongs to the ketopantoate reductase family.|||Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. http://togogenome.org/gene/521674:PLIM_RS10125 ^@ http://purl.uniprot.org/uniprot/D5SXU9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS19840 ^@ http://purl.uniprot.org/uniprot/D5SX49 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I 49 kDa subunit family.|||Cell inner membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS02575 ^@ http://purl.uniprot.org/uniprot/D5SQ89 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL6 family.|||Part of the 50S ribosomal subunit.|||This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. http://togogenome.org/gene/521674:PLIM_RS19890 ^@ http://purl.uniprot.org/uniprot/D5SX59 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the complex I subunit 4 family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS09530 ^@ http://purl.uniprot.org/uniprot/D5SYE0 ^@ Function|||Similarity ^@ Belongs to the DNA mismatch repair MutL/HexB family.|||This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. http://togogenome.org/gene/521674:PLIM_RS05275 ^@ http://purl.uniprot.org/uniprot/D5ST96 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS17200 ^@ http://purl.uniprot.org/uniprot/D5SUA3 ^@ Similarity ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. http://togogenome.org/gene/521674:PLIM_RS12895 ^@ http://purl.uniprot.org/uniprot/D5SPV3 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL35 family. http://togogenome.org/gene/521674:PLIM_RS09540 ^@ http://purl.uniprot.org/uniprot/D5SYE2 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the shikimate kinase family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.|||Cytoplasm|||Monomer. http://togogenome.org/gene/521674:PLIM_RS09835 ^@ http://purl.uniprot.org/uniprot/D5SYK0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the elongation factor P family.|||Cytoplasm|||Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. http://togogenome.org/gene/521674:PLIM_RS08150 ^@ http://purl.uniprot.org/uniprot/D5SWQ4 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurCDEF family.|||Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS13940 ^@ http://purl.uniprot.org/uniprot/D5SQS2 ^@ Similarity ^@ Belongs to the bacterial flagellin family. http://togogenome.org/gene/521674:PLIM_RS19845 ^@ http://purl.uniprot.org/uniprot/D5SX50 ^@ Cofactor|||Similarity ^@ Belongs to the complex I 24 kDa subunit family.|||Binds 1 [2Fe-2S] cluster. http://togogenome.org/gene/521674:PLIM_RS14415 ^@ http://purl.uniprot.org/uniprot/D5SRD4 ^@ Similarity ^@ Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. http://togogenome.org/gene/521674:PLIM_RS09740 ^@ http://purl.uniprot.org/uniprot/D5SYI1 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS19710 ^@ http://purl.uniprot.org/uniprot/D5SX21 ^@ Similarity ^@ Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. http://togogenome.org/gene/521674:PLIM_RS03360 ^@ http://purl.uniprot.org/uniprot/D5SR09 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS10045 ^@ http://purl.uniprot.org/uniprot/D5SXT3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS06165 ^@ http://purl.uniprot.org/uniprot/D5SU43 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the ketol-acid reductoisomerase family.|||Binds 2 magnesium ions per subunit.|||Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS05295 ^@ http://purl.uniprot.org/uniprot/D5ST99 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CobS family.|||Cell inner membrane|||Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.|||Membrane http://togogenome.org/gene/521674:PLIM_RS16400 ^@ http://purl.uniprot.org/uniprot/D5STH6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpB family.|||Tetramer of two alpha and two beta chains.|||The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. http://togogenome.org/gene/521674:PLIM_RS09095 ^@ http://purl.uniprot.org/uniprot/D5SXL7 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the acetokinase family.|||Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Mg(2+). Can also accept Mn(2+). http://togogenome.org/gene/521674:PLIM_RS04365 ^@ http://purl.uniprot.org/uniprot/D5SSC6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PlsY family.|||Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.|||Cell inner membrane|||Probably interacts with PlsX. http://togogenome.org/gene/521674:PLIM_RS14990 ^@ http://purl.uniprot.org/uniprot/D5SS15 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS18930 ^@ http://purl.uniprot.org/uniprot/D5SVY4 ^@ Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the flagella basal body rod proteins family. http://togogenome.org/gene/521674:PLIM_RS23280 ^@ http://purl.uniprot.org/uniprot/D5SWG3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS04080 ^@ http://purl.uniprot.org/uniprot/D5SRT2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Catalyzes the attachment of tryptophan to tRNA(Trp).|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS13860 ^@ http://purl.uniprot.org/uniprot/D5SQQ6 ^@ Similarity ^@ Belongs to the LysR transcriptional regulatory family. http://togogenome.org/gene/521674:PLIM_RS02565 ^@ http://purl.uniprot.org/uniprot/D5SQ87 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.|||Binds 1 zinc ion per subunit.|||Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.|||Part of the 30S ribosomal subunit. Contacts proteins S3 and S10. http://togogenome.org/gene/521674:PLIM_RS11690 ^@ http://purl.uniprot.org/uniprot/D5SNI0 ^@ Similarity ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. http://togogenome.org/gene/521674:PLIM_RS12410 ^@ http://purl.uniprot.org/uniprot/D5SP90 ^@ Similarity ^@ Belongs to the PTPS family. QueD subfamily. http://togogenome.org/gene/521674:PLIM_RS12380 ^@ http://purl.uniprot.org/uniprot/D5SP84 ^@ Function|||PTM|||Similarity ^@ An intermediate of this reaction is the autophosphorylated ppk in which a phosphate is covalently linked to a histidine residue through a N-P bond.|||Belongs to the polyphosphate kinase 1 (PPK1) family.|||Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). http://togogenome.org/gene/521674:PLIM_RS06665 ^@ http://purl.uniprot.org/uniprot/D5SUS2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the bacterial CoaD family.|||Cytoplasm|||Homohexamer.|||Reversibly transfers an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. http://togogenome.org/gene/521674:PLIM_RS14525 ^@ http://purl.uniprot.org/uniprot/D5SRF6 ^@ Function|||Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.|||Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate. http://togogenome.org/gene/521674:PLIM_RS18575 ^@ http://purl.uniprot.org/uniprot/D5SVR8 ^@ Similarity ^@ Belongs to the CinA family. http://togogenome.org/gene/521674:PLIM_RS11990 ^@ http://purl.uniprot.org/uniprot/D5SNP2 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PRA-CH family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 zinc ion per subunit.|||Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS06905 ^@ http://purl.uniprot.org/uniprot/D5SVA2 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Monomer. http://togogenome.org/gene/521674:PLIM_RS09830 ^@ http://purl.uniprot.org/uniprot/D5SYJ9 ^@ Function|||Similarity ^@ Belongs to the glycosyltransferase 104 family.|||Protein-arginine rhamnosyltransferase that catalyzes the transfer of a single rhamnose to elongation factor P (EF-P) on 'Lys-32', a modification required for EF-P-dependent rescue of polyproline stalled ribosomes. http://togogenome.org/gene/521674:PLIM_RS00900 ^@ http://purl.uniprot.org/uniprot/D5SNA3 ^@ Function|||Similarity ^@ Belongs to the bacterial ribosomal protein bL19 family.|||This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. http://togogenome.org/gene/521674:PLIM_RS07260 ^@ http://purl.uniprot.org/uniprot/D5SVG8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS12270 ^@ http://purl.uniprot.org/uniprot/D5SP64 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS01030 ^@ http://purl.uniprot.org/uniprot/D5SNC6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS19350 ^@ http://purl.uniprot.org/uniprot/D5SWI0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ExbD/TolR family.|||Cell membrane http://togogenome.org/gene/521674:PLIM_RS17285 ^@ http://purl.uniprot.org/uniprot/D5SUC2 ^@ Function|||Similarity ^@ Belongs to the MoeA family.|||Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. http://togogenome.org/gene/521674:PLIM_RS21025 ^@ http://purl.uniprot.org/uniprot/D5SZ00 ^@ Caution|||Function|||Similarity ^@ Belongs to the NrdR family.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR-boxes. http://togogenome.org/gene/521674:PLIM_RS11750 ^@ http://purl.uniprot.org/uniprot/D5SNJ2 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).|||Belongs to the GatC family.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/521674:PLIM_RS11125 ^@ http://purl.uniprot.org/uniprot/D5SMT1 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. Uronate isomerase family. http://togogenome.org/gene/521674:PLIM_RS02550 ^@ http://purl.uniprot.org/uniprot/D5SQ84 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL14 family.|||Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8. http://togogenome.org/gene/521674:PLIM_RS11435 ^@ http://purl.uniprot.org/uniprot/D5SMZ2 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the thiolase-like superfamily. FabH family.|||Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.|||Cytoplasm|||Homodimer.|||The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH. http://togogenome.org/gene/521674:PLIM_RS22945 ^@ http://purl.uniprot.org/uniprot/D5SQ41 ^@ Similarity ^@ Belongs to the low molecular weight phosphotyrosine protein phosphatase family. http://togogenome.org/gene/521674:PLIM_RS09410 ^@ http://purl.uniprot.org/uniprot/D5SYB6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS05960 ^@ http://purl.uniprot.org/uniprot/D5SU02 ^@ Similarity ^@ Belongs to the peptidase S41A family. http://togogenome.org/gene/521674:PLIM_RS04470 ^@ http://purl.uniprot.org/uniprot/D5SSE8 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bS21 family. http://togogenome.org/gene/521674:PLIM_RS00355 ^@ http://purl.uniprot.org/uniprot/D5SMK2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS02520 ^@ http://purl.uniprot.org/uniprot/D5SQ78 ^@ Function|||Similarity ^@ Belongs to the universal ribosomal protein uS19 family.|||Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. http://togogenome.org/gene/521674:PLIM_RS22190 ^@ http://purl.uniprot.org/uniprot/D5SN98 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the ATPase delta chain family.|||Cell inner membrane|||F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.|||F-type ATPases have 2 components, F(1) - the catalytic core - and F(0) - the membrane proton channel. F(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). F(0) has three main subunits: a(1), b(2) and c(10-14). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. F(1) is attached to F(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.|||This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction. http://togogenome.org/gene/521674:PLIM_RS09455 ^@ http://purl.uniprot.org/uniprot/D5SYC5 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.|||Belongs to the UppP family.|||Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS09705 ^@ http://purl.uniprot.org/uniprot/D5SYH4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.|||Cell inner membrane|||Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system and for the release of the potassium ions to the cytoplasm.|||The system is composed of three essential subunits: KdpA, KdpB and KdpC. http://togogenome.org/gene/521674:PLIM_RS12955 ^@ http://purl.uniprot.org/uniprot/D5SPW5 ^@ Similarity ^@ Belongs to the peptidase S41A family. http://togogenome.org/gene/521674:PLIM_RS06030 ^@ http://purl.uniprot.org/uniprot/D5SU17 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SMC family.|||Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible hinge near the middle of the molecule. These domains are separated by coiled-coil structures.|||Cytoplasm|||Homodimer.|||Required for chromosome condensation and partitioning. http://togogenome.org/gene/521674:PLIM_RS11170 ^@ http://purl.uniprot.org/uniprot/D5SMU1 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the histidinol dehydrogenase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS14995 ^@ http://purl.uniprot.org/uniprot/D5SS16 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS07165 ^@ http://purl.uniprot.org/uniprot/D5SVF0 ^@ Similarity ^@ Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 5 (UDGb) family. http://togogenome.org/gene/521674:PLIM_RS04040 ^@ http://purl.uniprot.org/uniprot/D5SRS4 ^@ Caution|||Function|||Similarity ^@ Belongs to the ATP:guanido phosphotransferase family.|||Catalyzes the specific phosphorylation of arginine residues in proteins.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS11410 ^@ http://purl.uniprot.org/uniprot/D5SMY7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PNP/MTAP phosphorylase family.|||Homotrimer.|||The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. http://togogenome.org/gene/521674:PLIM_RS09515 ^@ http://purl.uniprot.org/uniprot/D5SYD6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS13170 ^@ http://purl.uniprot.org/uniprot/D5SQ08 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.|||Cytoplasm|||One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex. http://togogenome.org/gene/521674:PLIM_RS18810 ^@ http://purl.uniprot.org/uniprot/D5SVW1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS02925 ^@ http://purl.uniprot.org/uniprot/D5SQE5 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Monomer. Associates with 30S ribosomal subunit, binds 16S rRNA.|||One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS05845 ^@ http://purl.uniprot.org/uniprot/D5STY1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the glycosyltransferase 4 family. MraY subfamily.|||Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.|||Cell inner membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS21510 ^@ http://purl.uniprot.org/uniprot/D5SZ94 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the TspO/BZRP family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS07980 ^@ http://purl.uniprot.org/uniprot/D5SW85 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-alcohol phosphatidyltransferase class-I family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS20550 ^@ http://purl.uniprot.org/uniprot/D5SY14 ^@ Similarity ^@ Belongs to the methylenetetrahydrofolate reductase family. http://togogenome.org/gene/521674:PLIM_RS20285 ^@ http://purl.uniprot.org/uniprot/D5SXD8 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS08975 ^@ http://purl.uniprot.org/uniprot/D5SXJ3 ^@ Function|||Subcellular Location Annotation ^@ Cytoplasm|||Nucleus|||Repair polymerase that plays a key role in base-excision repair. Has 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity that removes the 5' sugar phosphate and also acts as a DNA polymerase that adds one nucleotide to the 3' end of the arising single-nucleotide gap. Conducts 'gap-filling' DNA synthesis in a stepwise distributive fashion rather than in a processive fashion as for other DNA polymerases. http://togogenome.org/gene/521674:PLIM_RS16840 ^@ http://purl.uniprot.org/uniprot/D5STR1 ^@ Caution|||Function|||Similarity ^@ Belongs to the NAD synthetase family.|||Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.|||In the C-terminal section; belongs to the NAD synthetase family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS02305 ^@ http://purl.uniprot.org/uniprot/D5SPQ8 ^@ Function|||Similarity ^@ Belongs to the NusG family.|||Participates in transcription elongation, termination and antitermination. http://togogenome.org/gene/521674:PLIM_RS12100 ^@ http://purl.uniprot.org/uniprot/D5SNQ8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the 'phage' integrase family. XerC subfamily.|||Cytoplasm|||Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.|||Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. http://togogenome.org/gene/521674:PLIM_RS17680 ^@ http://purl.uniprot.org/uniprot/D5SUW3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.|||Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS20680 ^@ http://purl.uniprot.org/uniprot/D5SY39 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the methyltransferase superfamily. RsmH family.|||Cytoplasm|||Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. http://togogenome.org/gene/521674:PLIM_RS01350 ^@ http://purl.uniprot.org/uniprot/D5SNW2 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 1 family.|||Cell inner membrane|||Cell membrane|||Membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. http://togogenome.org/gene/521674:PLIM_RS12130 ^@ http://purl.uniprot.org/uniprot/D5SP34 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS03475 ^@ http://purl.uniprot.org/uniprot/D5SR29 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein (AccB), biotin carboxylase (AccC) and two subunits each of ACCase subunit alpha (AccA) and ACCase subunit beta (AccD).|||Belongs to the AccD/PCCB family.|||Binds 1 zinc ion per subunit.|||Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS02460 ^@ http://purl.uniprot.org/uniprot/D5SQ66 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS19220 ^@ http://purl.uniprot.org/uniprot/D5SWF6 ^@ Similarity ^@ Belongs to the peptidase S1C family. http://togogenome.org/gene/521674:PLIM_RS01720 ^@ http://purl.uniprot.org/uniprot/D5SP30 ^@ Caution|||Cofactor|||Similarity|||Subunit ^@ Belongs to the CarB family.|||Binds 4 Mg(2+) or Mn(2+) ions per subunit.|||Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS02175 ^@ http://purl.uniprot.org/uniprot/D5SPN8 ^@ Similarity ^@ Belongs to the UPF0337 (CsbD) family. http://togogenome.org/gene/521674:PLIM_RS18710 ^@ http://purl.uniprot.org/uniprot/D5SVU2 ^@ PTM|||Similarity ^@ Belongs to the sulfatase family.|||The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS12615 ^@ http://purl.uniprot.org/uniprot/D5SPD1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.|||Belongs to the RNR ribonuclease family. RNase R subfamily.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS02310 ^@ http://purl.uniprot.org/uniprot/D5SPQ9 ^@ Function|||PTM|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL11 family.|||Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.|||One or more lysine residues are methylated.|||Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex. http://togogenome.org/gene/521674:PLIM_RS07065 ^@ http://purl.uniprot.org/uniprot/D5SVD4 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DapA family.|||Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).|||Cytoplasm|||Homotetramer; dimer of dimers.|||Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB. http://togogenome.org/gene/521674:PLIM_RS11200 ^@ http://purl.uniprot.org/uniprot/D5SMU8 ^@ Similarity ^@ Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. http://togogenome.org/gene/521674:PLIM_RS00345 ^@ http://purl.uniprot.org/uniprot/D5SMK0 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.|||Belongs to the AAA ATPase family.|||Binds 1 zinc ion per subunit.|||Cell inner membrane|||Homohexamer.|||In the C-terminal section; belongs to the peptidase M41 family.|||In the central section; belongs to the AAA ATPase family. http://togogenome.org/gene/521674:PLIM_RS02505 ^@ http://purl.uniprot.org/uniprot/D5SQ75 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL4 family.|||Forms part of the polypeptide exit tunnel.|||One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/521674:PLIM_RS07090 ^@ http://purl.uniprot.org/uniprot/D5SVD8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the helicase family. PriA subfamily.|||Component of the primosome.|||Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA. http://togogenome.org/gene/521674:PLIM_RS10120 ^@ http://purl.uniprot.org/uniprot/D5SXU8 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M3 family.|||Binds 1 zinc ion. http://togogenome.org/gene/521674:PLIM_RS01665 ^@ http://purl.uniprot.org/uniprot/D5SP20 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS02615 ^@ http://purl.uniprot.org/uniprot/D5SQ97 ^@ Similarity|||Subunit ^@ Belongs to the bacterial ribosomal protein bL17 family.|||Part of the 50S ribosomal subunit. Contacts protein L32. http://togogenome.org/gene/521674:PLIM_RS07100 ^@ http://purl.uniprot.org/uniprot/D5SVE0 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M42 family.|||Binds 2 divalent metal cations per subunit. http://togogenome.org/gene/521674:PLIM_RS09035 ^@ http://purl.uniprot.org/uniprot/D5SXK5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the ThiC family.|||Binds 1 [4Fe-4S] cluster per subunit. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. http://togogenome.org/gene/521674:PLIM_RS04195 ^@ http://purl.uniprot.org/uniprot/D5SRV4 ^@ Caution ^@ Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS22800 ^@ http://purl.uniprot.org/uniprot/D5SYU6 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SecG family.|||Cell membrane|||Involved in protein export. Participates in an early event of protein translocation.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane http://togogenome.org/gene/521674:PLIM_RS20910 ^@ http://purl.uniprot.org/uniprot/D5SY85 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the FliP/MopC/SpaP family.|||Cell membrane|||Membrane|||Plays a role in the flagellum-specific transport system. http://togogenome.org/gene/521674:PLIM_RS03625 ^@ http://purl.uniprot.org/uniprot/D5SR59 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MurCDEF family. MurF subfamily.|||Cytoplasm|||Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. http://togogenome.org/gene/521674:PLIM_RS01045 ^@ http://purl.uniprot.org/uniprot/D5SND0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the glycosyltransferase 28 family. MurG subfamily.|||Cell inner membrane|||Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc-(pentapeptide)GlcNAc (lipid intermediate II).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS10810 ^@ http://purl.uniprot.org/uniprot/D5SYZ1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS01250 ^@ http://purl.uniprot.org/uniprot/D5SNU3 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the polypeptide deformylase family.|||Binds 1 Fe(2+) ion.|||Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. http://togogenome.org/gene/521674:PLIM_RS13295 ^@ http://purl.uniprot.org/uniprot/D5SQ36 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MCH family.|||Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl-H(4)MPT.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS03955 ^@ http://purl.uniprot.org/uniprot/D5SRQ8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the exbB/tolQ family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS09305 ^@ http://purl.uniprot.org/uniprot/D5SXQ7 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MraZ family.|||Forms oligomers.|||nucleoid http://togogenome.org/gene/521674:PLIM_RS05910 ^@ http://purl.uniprot.org/uniprot/D5STZ3 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.|||Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only aminotransferase known to utilize SAM as an amino donor.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS11725 ^@ http://purl.uniprot.org/uniprot/D5SNI7 ^@ Activity Regulation|||Caution|||Domain|||Function|||Similarity ^@ Belongs to the GlnD family.|||Has four distinct domains: an N-terminal nucleotidyltransferase (NT) domain responsible for UTase activity, a central HD domain that encodes UR activity, and two C-terminal ACT domains that seem to have a role in glutamine sensing.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.|||Uridylyltransferase (UTase) activity is inhibited by glutamine, while glutamine activates uridylyl-removing (UR) activity. http://togogenome.org/gene/521674:PLIM_RS11710 ^@ http://purl.uniprot.org/uniprot/D5SNI4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ammonia transporter channel (TC 1.A.11.2) family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS13205 ^@ http://purl.uniprot.org/uniprot/D5SQ15 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation ^@ 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.|||4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.|||Belongs to the acyl carrier protein (ACP) family.|||Carrier of the growing fatty acid chain in fatty acid biosynthesis.|||Cytoplasm http://togogenome.org/gene/521674:PLIM_RS08035 ^@ http://purl.uniprot.org/uniprot/D5SW97 ^@ Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. http://togogenome.org/gene/521674:PLIM_RS15175 ^@ http://purl.uniprot.org/uniprot/D5SS51 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS14085 ^@ http://purl.uniprot.org/uniprot/D5SQV1 ^@ Similarity ^@ Belongs to the carotenoid/retinoid oxidoreductase family. http://togogenome.org/gene/521674:PLIM_RS01215 ^@ http://purl.uniprot.org/uniprot/D5SNT5 ^@ Similarity ^@ Belongs to the bacterial ribosomal protein bL27 family. http://togogenome.org/gene/521674:PLIM_RS02965 ^@ http://purl.uniprot.org/uniprot/D5SQF4 ^@ Similarity ^@ Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. http://togogenome.org/gene/521674:PLIM_RS11655 ^@ http://purl.uniprot.org/uniprot/D5SNH4 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.|||Binds 2 magnesium ions per tetramer.|||Cytoplasm|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/521674:PLIM_RS10155 ^@ http://purl.uniprot.org/uniprot/D5SXV6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS08710 ^@ http://purl.uniprot.org/uniprot/D5SXE3 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.|||Nucleus http://togogenome.org/gene/521674:PLIM_RS21305 ^@ http://purl.uniprot.org/uniprot/D5SZ53 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the PyrK family.|||Binds 1 FAD per subunit.|||Binds 1 [2Fe-2S] cluster per subunit.|||Heterotetramer of 2 PyrK and 2 PyrD type B subunits.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). http://togogenome.org/gene/521674:PLIM_RS10655 ^@ http://purl.uniprot.org/uniprot/D5SYV8 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FtsK/SpoIIIE/SftA family.|||Homohexamer. Forms a ring that surrounds DNA.|||Membrane http://togogenome.org/gene/521674:PLIM_RS02530 ^@ http://purl.uniprot.org/uniprot/D5SQ80 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS3 family.|||Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.|||Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14. http://togogenome.org/gene/521674:PLIM_RS24545 ^@ http://purl.uniprot.org/uniprot/D5SYG6 ^@ Similarity ^@ Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. http://togogenome.org/gene/521674:PLIM_RS14970 ^@ http://purl.uniprot.org/uniprot/D5SS11 ^@ Cofactor|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. NagA family.|||Binds 1 divalent metal cation per subunit. http://togogenome.org/gene/521674:PLIM_RS22585 ^@ http://purl.uniprot.org/uniprot/D5SV95 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the complex I subunit 3 family.|||Cell inner membrane|||Cell membrane|||NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.|||NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. http://togogenome.org/gene/521674:PLIM_RS00995 ^@ http://purl.uniprot.org/uniprot/D5SNC0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS14010 ^@ http://purl.uniprot.org/uniprot/D5SQT6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TatA/E family.|||Cell inner membrane|||Forms a complex with TatC.|||Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. http://togogenome.org/gene/521674:PLIM_RS17420 ^@ http://purl.uniprot.org/uniprot/D5SUE8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GSP F family.|||Membrane http://togogenome.org/gene/521674:PLIM_RS10015 ^@ http://purl.uniprot.org/uniprot/D5SXS6 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS20905 ^@ http://purl.uniprot.org/uniprot/D5SY84 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Bacterial flagellum basal body|||Belongs to the FliQ/MopD/SpaQ family.|||Cell membrane|||Membrane|||Role in flagellar biosynthesis. http://togogenome.org/gene/521674:PLIM_RS12870 ^@ http://purl.uniprot.org/uniprot/D5SPU9 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 1 subfamily.|||Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS.|||Consists of three domains: the N-terminal catalytic domain, the editing domain and the C-terminal anticodon-binding domain.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS19025 ^@ http://purl.uniprot.org/uniprot/D5SWB8 ^@ Function|||Similarity ^@ Belongs to the pseudouridine synthase RluA family.|||Responsible for synthesis of pseudouridine from uracil. http://togogenome.org/gene/521674:PLIM_RS16825 ^@ http://purl.uniprot.org/uniprot/D5STQ8 ^@ Similarity ^@ Belongs to the pyruvate kinase family. http://togogenome.org/gene/521674:PLIM_RS01100 ^@ http://purl.uniprot.org/uniprot/D5SNE0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ABC-2 integral membrane protein family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS07650 ^@ http://purl.uniprot.org/uniprot/D5SW23 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS01480 ^@ http://purl.uniprot.org/uniprot/D5SNY8 ^@ Function|||Similarity ^@ Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.|||Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate. http://togogenome.org/gene/521674:PLIM_RS10115 ^@ http://purl.uniprot.org/uniprot/D5SXU7 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the Maf family. YceF subfamily.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Nucleoside triphosphate pyrophosphatase that hydrolyzes 7-methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. http://togogenome.org/gene/521674:PLIM_RS18180 ^@ http://purl.uniprot.org/uniprot/D5SV61 ^@ Similarity ^@ Belongs to the LysR transcriptional regulatory family. http://togogenome.org/gene/521674:PLIM_RS04125 ^@ http://purl.uniprot.org/uniprot/D5SRU1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS22555 ^@ http://purl.uniprot.org/uniprot/D5SUL2 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/521674:PLIM_RS11450 ^@ http://purl.uniprot.org/uniprot/D5SMZ5 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the AdoMet synthase family.|||Binds 1 potassium ion per subunit.|||Binds 2 divalent ions per subunit.|||Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.|||Cytoplasm|||Homotetramer; dimer of dimers. http://togogenome.org/gene/521674:PLIM_RS17945 ^@ http://purl.uniprot.org/uniprot/D5SV13 ^@ Caution|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. http://togogenome.org/gene/521674:PLIM_RS05980 ^@ http://purl.uniprot.org/uniprot/D5SU07 ^@ Similarity ^@ Belongs to the protease inhibitor I39 (alpha-2-macroglobulin) family. Bacterial alpha-2-macroglobulin subfamily. http://togogenome.org/gene/521674:PLIM_RS11995 ^@ http://purl.uniprot.org/uniprot/D5SNP3 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ATP phosphoribosyltransferase family. Long subfamily.|||Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.|||Cytoplasm|||Feedback inhibited by histidine. http://togogenome.org/gene/521674:PLIM_RS23450 ^@ http://purl.uniprot.org/uniprot/D5SN15 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS14095 ^@ http://purl.uniprot.org/uniprot/D5SR72 ^@ Similarity ^@ Belongs to the carotenoid/retinoid oxidoreductase family. http://togogenome.org/gene/521674:PLIM_RS17125 ^@ http://purl.uniprot.org/uniprot/D5SU90 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/521674:PLIM_RS20710 ^@ http://purl.uniprot.org/uniprot/D5SY45 ^@ Similarity ^@ Belongs to the UDPGP type 1 family. http://togogenome.org/gene/521674:PLIM_RS16110 ^@ http://purl.uniprot.org/uniprot/D5ST00 ^@ Similarity ^@ Belongs to the bacterial sugar transferase family. http://togogenome.org/gene/521674:PLIM_RS11965 ^@ http://purl.uniprot.org/uniprot/D5SNN7 ^@ Similarity ^@ Belongs to the universal stress protein A family. http://togogenome.org/gene/521674:PLIM_RS02525 ^@ http://purl.uniprot.org/uniprot/D5SQ79 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL22 family.|||Part of the 50S ribosomal subunit.|||The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.|||This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.|||This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g., L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. http://togogenome.org/gene/521674:PLIM_RS09950 ^@ http://purl.uniprot.org/uniprot/D5SYM1 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 57 family. http://togogenome.org/gene/521674:PLIM_RS05860 ^@ http://purl.uniprot.org/uniprot/D5STY4 ^@ Function|||Similarity ^@ Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.|||Synthesizes alpha-1,4-glucan chains using ADP-glucose. http://togogenome.org/gene/521674:PLIM_RS00330 ^@ http://purl.uniprot.org/uniprot/D5SMJ7 ^@ Function ^@ This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. http://togogenome.org/gene/521674:PLIM_RS00425 ^@ http://purl.uniprot.org/uniprot/D5SML5 ^@ Similarity ^@ Belongs to the GSP E family. http://togogenome.org/gene/521674:PLIM_RS08875 ^@ http://purl.uniprot.org/uniprot/D5SXH4 ^@ Similarity ^@ Belongs to the metallophosphoesterase superfamily. YfcE family. http://togogenome.org/gene/521674:PLIM_RS23355 ^@ http://purl.uniprot.org/uniprot/D5SXD9 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A monovalent cation. Ammonium or potassium.|||Belongs to the type III pantothenate kinase family.|||Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS14435 ^@ http://purl.uniprot.org/uniprot/D5SRD8 ^@ Similarity ^@ Belongs to the homoserine dehydrogenase family. http://togogenome.org/gene/521674:PLIM_RS12505 ^@ http://purl.uniprot.org/uniprot/D5SPA9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.|||Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.|||Monomer.|||Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed. http://togogenome.org/gene/521674:PLIM_RS17470 ^@ http://purl.uniprot.org/uniprot/D5SUF8 ^@ PTM ^@ The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity. http://togogenome.org/gene/521674:PLIM_RS02515 ^@ http://purl.uniprot.org/uniprot/D5SQ77 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL2 family.|||One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome. http://togogenome.org/gene/521674:PLIM_RS09700 ^@ http://purl.uniprot.org/uniprot/D5SYH3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the KdpA family.|||Cell inner membrane|||Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds the periplasmic potassium ions and delivers the ions to the membrane domain of KdpB through an intramembrane tunnel.|||The system is composed of three essential subunits: KdpA, KdpB and KdpC. http://togogenome.org/gene/521674:PLIM_RS06835 ^@ http://purl.uniprot.org/uniprot/D5SV88 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PurK/PurT family.|||Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).|||Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).|||Homodimer. http://togogenome.org/gene/521674:PLIM_RS19390 ^@ http://purl.uniprot.org/uniprot/D5SWI8 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the MsrP family.|||Binds 1 Mo-molybdopterin (Mo-MPT) cofactor per subunit.|||Heterodimer of a catalytic subunit (MsrP) and a heme-binding subunit (MsrQ).|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Part of the MsrPQ system that repairs oxidized cell envelope proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated cell envelope proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide.|||Periplasm http://togogenome.org/gene/521674:PLIM_RS01615 ^@ http://purl.uniprot.org/uniprot/D5SP09 ^@ Function|||Similarity ^@ Belongs to the APS kinase family.|||Catalyzes the synthesis of activated sulfate. http://togogenome.org/gene/521674:PLIM_RS07835 ^@ http://purl.uniprot.org/uniprot/D5SW58 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the drug/metabolite transporter (DMT) superfamily. Small multidrug resistance (SMR) (TC 2.A.7.1) family.|||Cell membrane|||Membrane http://togogenome.org/gene/521674:PLIM_RS09205 ^@ http://purl.uniprot.org/uniprot/D5SXN9 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the aspartate-semialdehyde dehydrogenase family.|||Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/521674:PLIM_RS03160 ^@ http://purl.uniprot.org/uniprot/D5SQX5 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the peptidase M32 family.|||Binds 1 zinc ion per subunit.|||Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. http://togogenome.org/gene/521674:PLIM_RS10625 ^@ http://purl.uniprot.org/uniprot/D5SYV3 ^@ Similarity ^@ Belongs to the anti-sigma-factor antagonist family. http://togogenome.org/gene/521674:PLIM_RS16420 ^@ http://purl.uniprot.org/uniprot/D5STH9 ^@ Similarity ^@ Belongs to the universal ribosomal protein uS2 family. http://togogenome.org/gene/521674:PLIM_RS04280 ^@ http://purl.uniprot.org/uniprot/D5SRX1 ^@ Cofactor|||PTM|||Subcellular Location Annotation ^@ Binds 2 heme groups per subunit.|||Binds 2 heme groups.|||Periplasm http://togogenome.org/gene/521674:PLIM_RS01160 ^@ http://purl.uniprot.org/uniprot/D5SNS6 ^@ Function|||Similarity ^@ Belongs to the sigma-70 factor family.|||Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-S contributes to the protection against external stress, thus playing a role in cellular fitness and survival.