http://togogenome.org/gene/47304:DFR88_RS10570 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVC8 ^@ Similarity ^@ Belongs to the glutaredoxin family. http://togogenome.org/gene/47304:DFR88_RS06560 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3L1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo5/eukaryotic RPB5 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS09910 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUC2 ^@ Function|||Similarity ^@ Belongs to the type-2 OGG1 family.|||Catalyzes the excision of an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 8-oxoG) from DNA. Also cleaves the DNA backbone at apurinic/apyrimidinic sites (AP sites). http://togogenome.org/gene/47304:DFR88_RS09475 ^@ http://purl.uniprot.org/uniprot/A0A4D8S782 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the UMP kinase family.|||Catalyzes the reversible phosphorylation of UMP to UDP.|||Cytoplasm|||Homohexamer.|||Inhibited by UTP.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS00660 ^@ http://purl.uniprot.org/uniprot/A0A4D8RPY0 ^@ Similarity ^@ In the N-terminal section; belongs to the CRISPR-associated nuclease Cas3-HD family.|||In the central section; belongs to the CRISPR-associated helicase Cas3 family. http://togogenome.org/gene/47304:DFR88_RS08300 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU73 ^@ Cofactor|||Similarity ^@ Binds 1 Mg(2+) ion per subunit.|||Binds 1 [4Fe-4S] cluster per subunit.|||In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. http://togogenome.org/gene/47304:DFR88_RS05105 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4Z5 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS05275 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW47 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS01990 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3F9 ^@ Similarity ^@ Belongs to the HupF/HypC family. http://togogenome.org/gene/47304:DFR88_RS01705 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3B0 ^@ Similarity ^@ Belongs to the selenium-binding protein family. http://togogenome.org/gene/47304:DFR88_RS03110 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV27 ^@ Similarity ^@ Belongs to the pterin-4-alpha-carbinolamine dehydratase family. http://togogenome.org/gene/47304:DFR88_RS03955 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXQ4 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the PurK/PurT family.|||Homodimer.|||Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS10720 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5R1 ^@ Similarity ^@ Belongs to the citrate synthase family. http://togogenome.org/gene/47304:DFR88_RS06130 ^@ http://purl.uniprot.org/uniprot/A0A4D8SEL0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecY/SEC61-alpha family.|||Cell membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma (SecE) subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. May interact with SecDF, and other proteins may be involved.|||Membrane|||The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. http://togogenome.org/gene/47304:DFR88_RS07920 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZT6 ^@ Similarity ^@ Belongs to the SIMIBI class G3E GTPase family. ArgK/MeaB subfamily. http://togogenome.org/gene/47304:DFR88_RS04590 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVT1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS11755 ^@ http://purl.uniprot.org/uniprot/A0A4D8S181 ^@ Similarity ^@ In the C-terminal section; belongs to the prokaryotic molybdopterin-containing oxidoreductase family. http://togogenome.org/gene/47304:DFR88_RS09920 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV15 ^@ Similarity ^@ Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/47304:DFR88_RS09785 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGS1 ^@ Caution|||Function|||Similarity ^@ Belongs to the Nre family.|||Involved in DNA damage repair.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS01515 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1L0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS08145 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXI8 ^@ Similarity ^@ Belongs to the complex I 20 kDa subunit family. http://togogenome.org/gene/47304:DFR88_RS09510 ^@ http://purl.uniprot.org/uniprot/A0A4D8S713 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the eIF-5A family.|||Cytoplasm|||Functions by promoting the formation of the first peptide bond. http://togogenome.org/gene/47304:DFR88_RS11090 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUZ1 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the PurK/PurT family.|||Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).|||Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS06260 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSP8 ^@ Similarity ^@ Belongs to the isocitrate and isopropylmalate dehydrogenases family. http://togogenome.org/gene/47304:DFR88_RS04635 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6H7 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family.|||In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/47304:DFR88_RS11220 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ03 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS06835 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ73 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the aTrm56 family.|||Cytoplasm|||Homodimer.|||Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. http://togogenome.org/gene/47304:DFR88_RS01310 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQ81 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS06540 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1R5 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL30 family. http://togogenome.org/gene/47304:DFR88_RS09615 ^@ http://purl.uniprot.org/uniprot/A0A4D8S524 ^@ Function|||Similarity|||Subunit ^@ Belongs to the diphthine synthase family.|||Homodimer.|||S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis. http://togogenome.org/gene/47304:DFR88_RS07060 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1Z7 ^@ Function|||Similarity ^@ Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily.|||Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate. http://togogenome.org/gene/47304:DFR88_RS06670 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3N0 ^@ Similarity ^@ Belongs to the serine/threonine dehydratase family. http://togogenome.org/gene/47304:DFR88_RS00615 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQG9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS06940 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3S3 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the adenosylhomocysteinase family.|||Binds 1 NAD(+) per subunit.|||Cytoplasm|||May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. http://togogenome.org/gene/47304:DFR88_RS04385 ^@ http://purl.uniprot.org/uniprot/A0A4D8SDG5 ^@ Similarity ^@ Belongs to the DODA-type extradiol aromatic ring-opening dioxygenase family. http://togogenome.org/gene/47304:DFR88_RS05520 ^@ http://purl.uniprot.org/uniprot/A0A4D8S569 ^@ Activity Regulation|||Caution|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.|||Belongs to the CTP synthase family.|||CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.|||Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS00420 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW09 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS08530 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW05 ^@ Cofactor|||Function|||PTM|||Similarity|||Subunit ^@ Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.|||Binds 1 pyruvoyl group covalently per subunit.|||Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.|||Heterotetramer of two alpha and two beta chains arranged as a dimer of alpha/beta heterodimers.|||Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain. http://togogenome.org/gene/47304:DFR88_RS11155 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYZ6 ^@ Cofactor|||Function ^@ Binds 1 [3Fe-4S] cluster.|||Binds 1 [4Fe-4S] cluster.|||Binds 1 zinc ion.|||Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. http://togogenome.org/gene/47304:DFR88_RS05720 ^@ http://purl.uniprot.org/uniprot/A0A4D8S184 ^@ Similarity ^@ Belongs to the peptidase M24B family. http://togogenome.org/gene/47304:DFR88_RS02530 ^@ http://purl.uniprot.org/uniprot/A0A4D8SII0 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the NrfD family.|||Membrane http://togogenome.org/gene/47304:DFR88_RS06125 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYR6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the archaeal adenylate kinase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS07400 ^@ http://purl.uniprot.org/uniprot/A0A4D8S406 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic release factor 1 family. Pelota subfamily.|||Cytoplasm|||May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity.|||Monomer.|||The N-terminal domain has the RNA-binding Sm fold. It harbors the endoribonuclease activity. http://togogenome.org/gene/47304:DFR88_RS03010 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX88 ^@ Similarity ^@ Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 5 (UDGb) family. http://togogenome.org/gene/47304:DFR88_RS06760 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5Y1 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the GGGP/HepGP synthase family. Group II subfamily.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. http://togogenome.org/gene/47304:DFR88_RS08555 ^@ http://purl.uniprot.org/uniprot/A0A4D8SG20 ^@ Similarity ^@ Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. http://togogenome.org/gene/47304:DFR88_RS00510 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQF1 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS08245 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU62 ^@ Similarity ^@ Belongs to the 3-hydroxyacyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS06210 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT86 ^@ Similarity ^@ Belongs to the universal ribosomal protein uL29 family. http://togogenome.org/gene/47304:DFR88_RS01475 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQB1 ^@ Cofactor|||Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase M48B family.|||Binds 1 zinc ion per subunit.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS06520 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6L9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS7 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS07010 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1Y7 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the archaeal MetE family.|||Binds 1 zinc ion per subunit.|||Catalyzes the transfer of a methyl group to L-homocysteine resulting in methionine formation. The physiological methyl donor is unknown.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS11180 ^@ http://purl.uniprot.org/uniprot/A0A4D8SHQ5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS10375 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3T8 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS05915 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2Q0 ^@ Similarity ^@ Belongs to the glutaredoxin family. http://togogenome.org/gene/47304:DFR88_RS11920 ^@ http://purl.uniprot.org/uniprot/A0A4D8S8K8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS04905 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2W7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS08630 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTR2 ^@ Function|||Similarity ^@ Belongs to the ATPase alpha/beta chains family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. http://togogenome.org/gene/47304:DFR88_RS07685 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTC6 ^@ Function|||Similarity ^@ Belongs to the CbiD family.|||Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. http://togogenome.org/gene/47304:DFR88_RS10170 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYG5 ^@ Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL20 family.|||Part of the 50S ribosomal subunit. Binds 23S rRNA. http://togogenome.org/gene/47304:DFR88_RS07500 ^@ http://purl.uniprot.org/uniprot/A0A4D8SFJ5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the IPP isomerase type 2 family.|||Cytoplasm|||Homooctamer. Dimer of tetramers.|||Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). http://togogenome.org/gene/47304:DFR88_RS00975 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQ24 ^@ Similarity ^@ Belongs to the class-I fumarase family. http://togogenome.org/gene/47304:DFR88_RS07935 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2N4 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase T1B family.|||Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.|||Cytoplasm|||The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.|||The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity. http://togogenome.org/gene/47304:DFR88_RS06625 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5V6 ^@ Caution|||Function|||Miscellaneous|||Similarity ^@ Belongs to the thiamine-monophosphate kinase family.|||Catalyzes the ATP-dependent phosphorylation of thiamine-monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Reaction mechanism of ThiL seems to utilize a direct, inline transfer of the gamma-phosphate of ATP to TMP rather than a phosphorylated enzyme intermediate. http://togogenome.org/gene/47304:DFR88_RS03760 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1W7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS07055 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3Y5 ^@ Function|||Similarity ^@ Belongs to the GTP-dependent DPCK family.|||Catalyzes the GTP-dependent phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A (CoA). http://togogenome.org/gene/47304:DFR88_RS08875 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZY2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the GHMP kinase family. Archaeal shikimate kinase subfamily.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS08470 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6Q1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the PRA-PH family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS09555 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWM4 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Acetylated. Deacetylation by the SIR2-homolog deacetylase may regulate its activity.|||Belongs to the histone-like Alba family.|||Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes.|||Chromosome|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/47304:DFR88_RS08635 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4L7 ^@ Function|||Similarity ^@ Belongs to the V-ATPase E subunit family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/47304:DFR88_RS07980 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZU5 ^@ Similarity ^@ Belongs to the MCM family. http://togogenome.org/gene/47304:DFR88_RS04415 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVP2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS08260 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZM6 ^@ Caution|||Cofactor|||Similarity|||Subunit ^@ Belongs to the CarB family.|||Binds 4 Mg(2+) or Mn(2+) ions per subunit.|||Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS04695 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRU0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS05965 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3A1 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Binds 1 FMN per subunit.|||Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'-phosphopantotheine.|||In the C-terminal section; belongs to the PPC synthetase family.|||In the N-terminal section; belongs to the HFCD (homo-oligomeric flavin containing Cys decarboxylase) superfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS06390 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYY1 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL21 family. http://togogenome.org/gene/47304:DFR88_RS03370 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXE4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PPase family.|||Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.|||Cytoplasm|||Homohexamer. http://togogenome.org/gene/47304:DFR88_RS11060 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0X5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07015 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT17 ^@ Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS15 family.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS00950 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWA5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS03335 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZY1 ^@ Function|||Similarity ^@ Belongs to the eIF-1A family.|||Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. http://togogenome.org/gene/47304:DFR88_RS01155 ^@ http://purl.uniprot.org/uniprot/A0A4D8SIF2 ^@ Caution|||Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peroxiredoxin family. Prx6 subfamily.|||Cytoplasm|||Homodecamer. Pentamer of dimers that assemble into a ring structure.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule.|||Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. http://togogenome.org/gene/47304:DFR88_RS09875 ^@ http://purl.uniprot.org/uniprot/A0A4D8S589 ^@ Similarity ^@ Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/47304:DFR88_RS09950 ^@ http://purl.uniprot.org/uniprot/A0A4D8S575 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the enolase family.|||Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.|||Cell surface|||Cytoplasm|||Secreted|||The covalent binding to the substrate causes inactivation of the enzyme, and possibly serves as a signal for the export of the protein. http://togogenome.org/gene/47304:DFR88_RS11525 ^@ http://purl.uniprot.org/uniprot/A0A4D8S144 ^@ Subcellular Location Annotation ^@ Early endosome|||Endosome http://togogenome.org/gene/47304:DFR88_RS08750 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUF2 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the thymidylate synthase ThyX family.|||Binds 4 FAD per tetramer. Each FAD binding site is formed by three monomers.|||Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.|||Homotetramer. http://togogenome.org/gene/47304:DFR88_RS06315 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3H0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RRP4 family.|||Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with an hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers.|||Cytoplasm|||Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. http://togogenome.org/gene/47304:DFR88_RS11480 ^@ http://purl.uniprot.org/uniprot/A0A4D8SHW4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the helicase family. Hel308 subfamily.|||DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks.|||Monomer. http://togogenome.org/gene/47304:DFR88_RS00605 ^@ http://purl.uniprot.org/uniprot/A0A4D8RPX0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07145 ^@ http://purl.uniprot.org/uniprot/A0A4D8S636 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the THI4 family.|||Homooctamer; tetramer of dimers.|||Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS05835 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSE7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. LysJ subfamily.|||Binds 1 pyridoxal phosphate per subunit.|||Cytoplasm|||Homodimer.|||Involved in both the arginine and lysine biosynthetic pathways. http://togogenome.org/gene/47304:DFR88_RS06275 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWK4 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. http://togogenome.org/gene/47304:DFR88_RS02145 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUL9 ^@ Cofactor|||PTM|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.|||Binds 2 nickel ions per subunit.|||Carbamylation allows a single lysine to coordinate two nickel ions.|||Carboxylation allows a single lysine to coordinate two nickel ions.|||Cytoplasm|||Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme. http://togogenome.org/gene/47304:DFR88_RS03790 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXM5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS05660 ^@ http://purl.uniprot.org/uniprot/A0A4D8S386 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TPP enzyme family.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS08345 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4F8 ^@ Function|||Similarity ^@ Belongs to the TYW3 family.|||S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wyosine derivatives biosynthesis pathway. Probably methylates N-4 position of wybutosine-86 to produce wybutosine-72. http://togogenome.org/gene/47304:DFR88_RS07420 ^@ http://purl.uniprot.org/uniprot/A0A4D8S677 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.|||Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).|||Cytoplasm|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS05830 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1A8 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the peptidase M20A family. LysK subfamily.|||Binds 2 Zn(2+) or Co(2+) ions per subunit.|||Catalyzes the release of L-lysine from [LysW]-gamma-L-lysine and the release of L-ornithine from [LysW]-L-ornithine.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS05770 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZM4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS08580 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUC4 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products.|||Belongs to the Holliday junction resolvase Hjc family.|||Binds 1 Mg(2+) ion per subunit.|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS06305 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSQ8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNase PH family. Rrp42 subfamily.|||Component of the archaeal exosome complex. Forms a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. The hexameric ring associates with a trimer of Rrp4 and/or Csl4 subunits.|||Cytoplasm|||Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. http://togogenome.org/gene/47304:DFR88_RS09925 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYC5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS08870 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6X8 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the chorismate synthase family.|||Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Reduced FMN (FMNH(2)). http://togogenome.org/gene/47304:DFR88_RS06205 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3E8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic/archaeal RNase P protein component 1 family.|||Consists of a catalytic RNA component and at least 4-5 protein subunits.|||Cytoplasm|||Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. http://togogenome.org/gene/47304:DFR88_RS07125 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3V7 ^@ Similarity ^@ Belongs to the protein kinase superfamily. BUD32 family. http://togogenome.org/gene/47304:DFR88_RS09720 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0B1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS07485 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZL7 ^@ Similarity ^@ Belongs to the MEMO1 family. http://togogenome.org/gene/47304:DFR88_RS05475 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2N5 ^@ Similarity ^@ Belongs to the SIS family. PHI subfamily. http://togogenome.org/gene/47304:DFR88_RS06910 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ86 ^@ Similarity ^@ Belongs to the HerA family. http://togogenome.org/gene/47304:DFR88_RS10725 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVF9 ^@ Similarity ^@ Belongs to the UPF0111 family. http://togogenome.org/gene/47304:DFR88_RS08210 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZL6 ^@ Cofactor ^@ Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. http://togogenome.org/gene/47304:DFR88_RS03005 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3X5 ^@ Function|||Similarity ^@ Belongs to the THEP1 NTPase family.|||Has nucleotide phosphatase activity towards ATP, GTP, CTP, TTP and UTP. May hydrolyze nucleoside diphosphates with lower efficiency. http://togogenome.org/gene/47304:DFR88_RS07345 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZA6 ^@ Similarity ^@ Belongs to the HerA family. http://togogenome.org/gene/47304:DFR88_RS11095 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5Z2 ^@ Function|||Similarity ^@ Belongs to the AIR carboxylase family. Class I subfamily.|||Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). http://togogenome.org/gene/47304:DFR88_RS11100 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVM2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS10235 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0J4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the beta-RFA-P synthase family.|||Catalyzes the condensation of 4-aminobenzoate (pABA) with 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to produce beta-ribofuranosylaminobenzene 5'-phosphate (beta-RFA-P).|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS05150 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSQ9 ^@ Similarity ^@ Belongs to the peptidase M1 family. http://togogenome.org/gene/47304:DFR88_RS09855 ^@ http://purl.uniprot.org/uniprot/A0A4D8S591 ^@ Similarity ^@ Belongs to the TrpF family. http://togogenome.org/gene/47304:DFR88_RS03225 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRU4 ^@ Similarity ^@ Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. http://togogenome.org/gene/47304:DFR88_RS07415 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6W7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the archaeal DnaG primase family.|||Forms a ternary complex with MCM helicase and DNA. Component of the archaeal exosome complex.|||RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome. http://togogenome.org/gene/47304:DFR88_RS01110 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWD8 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. S-2-haloalkanoic acid dehalogenase family. http://togogenome.org/gene/47304:DFR88_RS07045 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZB5 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic RPB7/RPC8 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Forms 2 domains with an elongated structure; Rpo4 packs into the hinge region between the 2 domains.|||Nucleus|||Part of the RNA polymerase complex. Forms a stalk with Rpo4 that extends from the main structure. http://togogenome.org/gene/47304:DFR88_RS04865 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2N6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS06155 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT79 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL19 family.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS09155 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4X5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS09525 ^@ http://purl.uniprot.org/uniprot/A0A4D8RY58 ^@ Function|||Similarity ^@ Belongs to the deoxyhypusine synthase family.|||Catalyzes the NAD-dependent oxidative cleavage of spermidine and the subsequent transfer of the butylamine moiety of spermidine to the epsilon-amino group of a specific lysine residue of the eIF-5A precursor protein to form the intermediate deoxyhypusine residue. http://togogenome.org/gene/47304:DFR88_RS08460 ^@ http://purl.uniprot.org/uniprot/A0A4D8SJ41 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PRA-CH family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 zinc ion per subunit.|||Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS06385 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYX3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic RPB4 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. This subunit is less well bound than the others.|||Part of the RNA polymerase complex. Forms a stalk with Rpo7 that extends from the main structure. http://togogenome.org/gene/47304:DFR88_RS04490 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1K6 ^@ Similarity ^@ Belongs to the WrbA family. http://togogenome.org/gene/47304:DFR88_RS06300 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1K9 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL43 family. Putative zinc-binding subfamily.|||Binds to the 23S rRNA.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS04355 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSC6 ^@ Similarity ^@ Belongs to the LDH/MDH superfamily. http://togogenome.org/gene/47304:DFR88_RS03125 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6D9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS03055 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3Y6 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the IlvD/Edd family.|||Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.|||Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS09035 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUK6 ^@ Similarity ^@ In the C-terminal section; belongs to the transferase hexapeptide repeat family.|||In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family. http://togogenome.org/gene/47304:DFR88_RS07000 ^@ http://purl.uniprot.org/uniprot/A0A4D8SF75 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PCNA family.|||Homotrimer. The subunits circularize to form a toroid; DNA passes through its center. Replication factor C (RFC) is required to load the toroid on the DNA.|||Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication.|||Sliding clamp subunit. Responsible for tethering the catalytic subunit of DNA polymerase to DNA during high-speed replication. http://togogenome.org/gene/47304:DFR88_RS11405 ^@ http://purl.uniprot.org/uniprot/A0A4D8S8A8 ^@ Similarity ^@ Belongs to the tRNA methyltransferase O family. http://togogenome.org/gene/47304:DFR88_RS07300 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2A2 ^@ Function|||Similarity ^@ Belongs to the adenylate kinase family. AK6 subfamily.|||Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. http://togogenome.org/gene/47304:DFR88_RS05630 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6S6 ^@ Similarity ^@ Belongs to the pseudouridine synthase TruD family. http://togogenome.org/gene/47304:DFR88_RS09830 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0U4 ^@ Similarity ^@ Belongs to the myo-inositol 1-phosphate synthase family. http://togogenome.org/gene/47304:DFR88_RS02065 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1V0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS06510 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5T5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS10 family.|||Involved in the binding of tRNA to the ribosomes.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS11520 ^@ http://purl.uniprot.org/uniprot/A0A4D8S745 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the endonuclease V family.|||Cytoplasm|||DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA. http://togogenome.org/gene/47304:DFR88_RS05495 ^@ http://purl.uniprot.org/uniprot/A0A4D8S323 ^@ Similarity ^@ Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. http://togogenome.org/gene/47304:DFR88_RS09340 ^@ http://purl.uniprot.org/uniprot/A0A4D8S056 ^@ Function|||Miscellaneous|||Similarity|||Subunit ^@ A single active site specifically recognizes both ATP and CTP and is responsible for their addition.|||Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Archaeal CCA-adding enzyme subfamily.|||Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS01090 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0F6 ^@ Similarity ^@ Belongs to the pirin family. http://togogenome.org/gene/47304:DFR88_RS11820 ^@ http://purl.uniprot.org/uniprot/A0A4D8SI81 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the NiCoT transporter (TC 2.A.52) family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS06720 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSX8 ^@ Function|||Similarity ^@ Belongs to the CDC6/cdc18 family.|||Involved in regulation of DNA replication. http://togogenome.org/gene/47304:DFR88_RS07120 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT44 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the HAM1 NTPase family.|||Binds 1 Mg(2+) ion per subunit.|||Homodimer.|||Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. http://togogenome.org/gene/47304:DFR88_RS11925 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1A5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS06950 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTL0 ^@ Similarity ^@ Belongs to the FKBP-type PPIase family. http://togogenome.org/gene/47304:DFR88_RS00440 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYC6 ^@ Function|||Similarity ^@ Belongs to the PINc/VapC protein family.|||Toxic component of a toxin-antitoxin (TA) system. An RNase. http://togogenome.org/gene/47304:DFR88_RS07450 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT91 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS11 family.|||Located on the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS06825 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5Z1 ^@ Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. http://togogenome.org/gene/47304:DFR88_RS05775 ^@ http://purl.uniprot.org/uniprot/A0A4D8S196 ^@ Function ^@ Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. http://togogenome.org/gene/47304:DFR88_RS06240 ^@ http://purl.uniprot.org/uniprot/A0A4D8SEP5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL4 family.|||Forms part of the polypeptide exit tunnel.|||One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS01645 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUC9 ^@ Similarity ^@ Belongs to the thymidylate kinase family. http://togogenome.org/gene/47304:DFR88_RS01920 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4Q1 ^@ Similarity ^@ Belongs to the HupF/HypC family. http://togogenome.org/gene/47304:DFR88_RS06705 ^@ http://purl.uniprot.org/uniprot/A0A4D8SF13 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the archaeal NMN adenylyltransferase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS11745 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ79 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the FdhD family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. http://togogenome.org/gene/47304:DFR88_RS08660 ^@ http://purl.uniprot.org/uniprot/A0A4D8S072 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-alcohol phosphatidyltransferase class-I family.|||Binds 2 Mg(2+) or Mn(2+) ions per subunit.|||Catalyzes the formation of archaetidylinositol phosphate (AIP) from CDP-archaeol (CDP-ArOH or CDP-2,3-bis-(O-phytanyl)-sn-glycerol) and 1L-myo-inositol 1-phosphate (IP or 1D-myo-inositol 3-phosphate). AIP is a precursor of archaetidyl-myo-inositol (AI), an ether-type inositol phospholipid ubiquitously distributed in archaea membranes and essential for glycolipid biosynthesis in archaea.|||Cell membrane|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08715 ^@ http://purl.uniprot.org/uniprot/A0A4D8S086 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS09360 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGI8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS09575 ^@ http://purl.uniprot.org/uniprot/A0A4D8S542 ^@ Similarity ^@ Belongs to the helicase family. RAD25/XPB subfamily. http://togogenome.org/gene/47304:DFR88_RS08290 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTK6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the AIR synthase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS00985 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0C6 ^@ Similarity ^@ Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. http://togogenome.org/gene/47304:DFR88_RS03750 ^@ http://purl.uniprot.org/uniprot/A0A4D8S059 ^@ Cofactor|||Similarity ^@ Belongs to the peptidase M1 family.|||Binds 1 zinc ion per subunit. http://togogenome.org/gene/47304:DFR88_RS04115 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXT4 ^@ Similarity ^@ Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIA subfamily. http://togogenome.org/gene/47304:DFR88_RS02160 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWR8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.|||Cytoplasm|||Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.|||Homodimer. UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel. http://togogenome.org/gene/47304:DFR88_RS03320 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXC9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eIF-2-beta/eIF-5 family.|||Heterotrimer composed of an alpha, a beta and a gamma chain.|||eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. http://togogenome.org/gene/47304:DFR88_RS02020 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQK1 ^@ Similarity ^@ Belongs to the glycosyl hydrolase 31 family. http://togogenome.org/gene/47304:DFR88_RS08650 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6T3 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. http://togogenome.org/gene/47304:DFR88_RS05840 ^@ http://purl.uniprot.org/uniprot/A0A4D8S387 ^@ Similarity ^@ Belongs to the RimK family. LysX subfamily. http://togogenome.org/gene/47304:DFR88_RS08915 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXX0 ^@ Function|||Similarity ^@ Belongs to the DPH1/DPH2 family.|||Catalyzes the first step of diphthamide biosynthesis, i.e. the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-L-methionine (SAM) to the C2 position of the imidazole ring of the target histidine residue in translation elongation factor 2 (EF-2). http://togogenome.org/gene/47304:DFR88_RS01985 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUJ0 ^@ Similarity ^@ Belongs to the HupF/HypC family. http://togogenome.org/gene/47304:DFR88_RS05405 ^@ http://purl.uniprot.org/uniprot/A0A4D8SE23 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS04990 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4X0 ^@ Similarity ^@ Belongs to the ETF alpha-subunit/FixB family. http://togogenome.org/gene/47304:DFR88_RS09600 ^@ http://purl.uniprot.org/uniprot/A0A4D8S093 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TYW1 family.|||Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Component of the wyosine derivatives biosynthesis pathway that catalyzes the condensation of N-methylguanine with 2 carbon atoms from pyruvate to form the tricyclic 4-demethylwyosine (imG-14) on guanosine-37 of tRNA(Phe).|||Cytoplasm|||Monomer. http://togogenome.org/gene/47304:DFR88_RS08495 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4L1 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ATP phosphoribosyltransferase family. Long subfamily.|||Catalyzes the condensation of ATP and 5-phosphoribose 1-diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.|||Cytoplasm|||Feedback inhibited by histidine. http://togogenome.org/gene/47304:DFR88_RS05115 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYA3 ^@ Subunit ^@ Heterotetramer of one alpha, one beta, one delta and one gamma chain. http://togogenome.org/gene/47304:DFR88_RS06545 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVV4 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA polymerase beta' chain family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms part of the jaw domain.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS06180 ^@ http://purl.uniprot.org/uniprot/A0A4D8SEM7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL5 family.|||Part of the 50S ribosomal subunit; contacts the 5S rRNA and probably tRNA. Forms a bridge to the 30S subunit in the 70S ribosome.|||This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. http://togogenome.org/gene/47304:DFR88_RS08935 ^@ http://purl.uniprot.org/uniprot/A0A4D8SJ55 ^@ Similarity ^@ Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. http://togogenome.org/gene/47304:DFR88_RS00945 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZD1 ^@ Similarity ^@ Belongs to the LDH2/MDH2 oxidoreductase family. http://togogenome.org/gene/47304:DFR88_RS09305 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4Y4 ^@ Similarity ^@ Belongs to the GPN-loop GTPase family. http://togogenome.org/gene/47304:DFR88_RS02780 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1E9 ^@ Caution|||Cofactor|||Domain|||Function|||Similarity|||Subunit ^@ Belongs to the SMC family. RAD50 subfamily.|||Binds 1 zinc ion per homodimer.|||Homodimer. Forms a heterotetramer composed of two Mre11 subunits and two Rad50 subunits.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex.|||The two conserved Cys that bind zinc constitute the zinc-hook, which separates the large intramolecular coiled coil regions. The 2 Cys residues coordinate one molecule of zinc with the help of the 2 Cys residues of the zinc-hook of another Rad50 molecule, thereby forming a V-shaped homodimer. http://togogenome.org/gene/47304:DFR88_RS03575 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRZ6 ^@ Similarity ^@ Belongs to the precorrin methyltransferase family. http://togogenome.org/gene/47304:DFR88_RS09780 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0T4 ^@ Similarity ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. http://togogenome.org/gene/47304:DFR88_RS07570 ^@ http://purl.uniprot.org/uniprot/A0A4D8SFK6 ^@ Similarity ^@ Belongs to the UPF0173 family. http://togogenome.org/gene/47304:DFR88_RS07510 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2E2 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS05110 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYA4 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS05740 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWC3 ^@ Activity Regulation|||Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Activated by a monovalent cation that binds near, but not in, the active site. The most likely occupant of the site in vivo is potassium. Ion binding induces a conformational change that may alter substrate affinity.|||Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.|||Belongs to the carbohydrate kinase pfkB family.|||Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Requires a divalent cation, most likely magnesium in vivo, as an electrophilic catalyst to aid phosphoryl group transfer. It is the chelate of the metal and the nucleotide that is the actual substrate. http://togogenome.org/gene/47304:DFR88_RS10640 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1A2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the ammonia transporter channel (TC 1.A.11.2) family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS11000 ^@ http://purl.uniprot.org/uniprot/A0A4D8S838 ^@ Similarity ^@ Belongs to the aconitase/IPM isomerase family. http://togogenome.org/gene/47304:DFR88_RS07455 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWI2 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase subunit family.|||Binds 1 [3Fe-4S] cluster.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS06515 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYZ2 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. http://togogenome.org/gene/47304:DFR88_RS10220 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYH6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the 'phage' integrase family. XerA subfamily.|||Cytoplasm|||Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. http://togogenome.org/gene/47304:DFR88_RS10690 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0R4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07025 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTM2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CbiX family. CbiXS subfamily.|||Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis.|||Homotetramer; dimer of dimers. http://togogenome.org/gene/47304:DFR88_RS11325 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVQ5 ^@ Similarity ^@ Belongs to the RutC family. http://togogenome.org/gene/47304:DFR88_RS09310 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3C7 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the ribose-phosphate pyrophosphokinase family. Class III (archaeal) subfamily.|||Binds 2 Mg(2+) ions per subunit.|||Cytoplasm|||Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P). http://togogenome.org/gene/47304:DFR88_RS06980 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ51 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the spermidine/spermine synthase family.|||Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.|||Homodimer or homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS07430 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZK6 ^@ Similarity ^@ Belongs to the UPF0047 family. http://togogenome.org/gene/47304:DFR88_RS09480 ^@ http://purl.uniprot.org/uniprot/A0A4D8S074 ^@ Function|||PTM|||Similarity|||Subcellular Location Annotation|||Subunit ^@ A probable chromatin protein, binds double-strand DNA without sequence specificity. Constrains negative DNA supercoils.|||Belongs to the Cren7 family.|||Cytoplasm|||Methylated at multiple sites, to varying extents.|||Monomer. http://togogenome.org/gene/47304:DFR88_RS01640 ^@ http://purl.uniprot.org/uniprot/A0A4D8RR02 ^@ Similarity ^@ Belongs to the thymidylate kinase family. http://togogenome.org/gene/47304:DFR88_RS05470 ^@ http://purl.uniprot.org/uniprot/A0A4D8S353 ^@ Similarity ^@ Belongs to the DeoC/FbaB aldolase family. http://togogenome.org/gene/47304:DFR88_RS07580 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2F9 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 2 subfamily.|||Cytoplasm|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/47304:DFR88_RS09860 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV05 ^@ Similarity ^@ Belongs to the anthranilate synthase component I family. http://togogenome.org/gene/47304:DFR88_RS06875 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2S6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo8 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS11435 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV55 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS08390 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTM4 ^@ Similarity|||Subunit ^@ Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.|||Heterooligomer of catalytic and regulatory chains. http://togogenome.org/gene/47304:DFR88_RS06225 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5M2 ^@ Function|||Similarity ^@ Belongs to the universal ribosomal protein uS19 family.|||Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. http://togogenome.org/gene/47304:DFR88_RS06320 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTA4 ^@ Similarity ^@ Belongs to the SDO1/SBDS family. http://togogenome.org/gene/47304:DFR88_RS10415 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0L9 ^@ Caution|||Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08905 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4R4 ^@ Similarity ^@ Belongs to the glutaredoxin family. http://togogenome.org/gene/47304:DFR88_RS06280 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5N2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.|||Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS08595 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZT4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PdxS/SNZ family.|||Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively.|||In the presence of PdxT, forms a dodecamer of heterodimers. http://togogenome.org/gene/47304:DFR88_RS05930 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYP1 ^@ Function|||Similarity ^@ Belongs to the ATP-dependent DNA ligase family.|||DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. http://togogenome.org/gene/47304:DFR88_RS03155 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZU7 ^@ Similarity ^@ Belongs to the FPP/GGPP synthase family. http://togogenome.org/gene/47304:DFR88_RS03765 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS27 ^@ Similarity ^@ Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family. http://togogenome.org/gene/47304:DFR88_RS05400 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYF1 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07410 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX75 ^@ Similarity ^@ Belongs to the DNA polymerase type-B family. http://togogenome.org/gene/47304:DFR88_RS02960 ^@ http://purl.uniprot.org/uniprot/A0A4D8SCP8 ^@ Similarity ^@ Belongs to the AP endonuclease 2 family. http://togogenome.org/gene/47304:DFR88_RS03630 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRB2 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DNA polymerase type-Y family.|||Binds 2 magnesium ions per subunit.|||Cytoplasm|||Monomer.|||Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis. http://togogenome.org/gene/47304:DFR88_RS07065 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT33 ^@ Similarity ^@ Belongs to the AAA ATPase family. CDC48 subfamily. http://togogenome.org/gene/47304:DFR88_RS09625 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU71 ^@ Similarity ^@ Belongs to the TFIIB family. http://togogenome.org/gene/47304:DFR88_RS06500 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWQ5 ^@ Domain|||Function|||Miscellaneous|||Similarity ^@ Belongs to the CobB/CbiA family.|||Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source.|||Comprises of two domains. The C-terminal domain contains the binding site for glutamine and catalyzes the hydrolysis of this substrate to glutamate and ammonia. The N-terminal domain is anticipated to bind ATP and cobyrinate and catalyzes the ultimate synthesis of the diamide product. The ammonia produced via the glutaminase domain is probably translocated to the adjacent domain via a molecular tunnel, where it reacts with an activated intermediate.|||The a and c carboxylates of cobyrinate are activated for nucleophilic attack via formation of a phosphorylated intermediate by ATP. CbiA catalyzes first the amidation of the c-carboxylate, and then that of the a-carboxylate. http://togogenome.org/gene/47304:DFR88_RS02615 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1B3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the TatC family.|||Cell membrane|||Forms a complex with TatA.|||Membrane|||Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. http://togogenome.org/gene/47304:DFR88_RS08340 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTL6 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the radical SAM superfamily. 7-carboxy-7-deazaguanine synthase family.|||Binds 1 S-adenosyl-L-methionine per subunit.|||Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS00015 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTG2 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAD kinase family.|||Cytoplasm|||Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08325 ^@ http://purl.uniprot.org/uniprot/A0A4D8SFY2 ^@ Similarity ^@ Belongs to the SAICAR synthetase family. http://togogenome.org/gene/47304:DFR88_RS08450 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4H8 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.|||Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).|||Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.|||Cytoplasm|||Homodimer. The tRNA molecule binds across the dimer. http://togogenome.org/gene/47304:DFR88_RS05285 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYD8 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS06245 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3J3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL3 family.|||One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L24e. http://togogenome.org/gene/47304:DFR88_RS10175 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7L9 ^@ Function|||Similarity ^@ Belongs to the eIF-6 family.|||Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. http://togogenome.org/gene/47304:DFR88_RS04470 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSE6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TPP enzyme family.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS01655 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWN6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the pyrroline-5-carboxylate reductase family.|||Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS05665 ^@ http://purl.uniprot.org/uniprot/A0A4D8S175 ^@ Function ^@ Catalyzes the synthesis of GMP from XMP. http://togogenome.org/gene/47304:DFR88_RS07295 ^@ http://purl.uniprot.org/uniprot/A0A4D8S436 ^@ Function|||Similarity|||Subunit ^@ Belongs to the Mrp/NBP35 ATP-binding proteins family.|||Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS07945 ^@ http://purl.uniprot.org/uniprot/A0A4D8S489 ^@ Function|||Similarity|||Subunit ^@ Belongs to the activator 1 small subunits family. RfcS subfamily.|||Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).|||Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. http://togogenome.org/gene/47304:DFR88_RS00010 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQ61 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS00130 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQ77 ^@ Function|||Similarity ^@ Belongs to the PINc/VapC protein family.|||Toxic component of a toxin-antitoxin (TA) system. An RNase. http://togogenome.org/gene/47304:DFR88_RS06465 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYY3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PCNA family.|||Homotrimer. The subunits circularize to form a toroid; DNA passes through its center. Replication factor C (RFC) is required to load the toroid on the DNA.|||Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. http://togogenome.org/gene/47304:DFR88_RS09325 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUQ6 ^@ Similarity ^@ Belongs to the UPF0201 family. http://togogenome.org/gene/47304:DFR88_RS08275 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1T4 ^@ Caution|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the argininosuccinate synthase family. Type 1 subfamily.|||Cytoplasm|||Homotetramer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08730 ^@ http://purl.uniprot.org/uniprot/A0A4D8S336 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS01380 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU76 ^@ Function ^@ Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. http://togogenome.org/gene/47304:DFR88_RS08830 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4S0 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07720 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZF3 ^@ Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. http://togogenome.org/gene/47304:DFR88_RS05340 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYE4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS08925 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6Z0 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo11/eukaryotic RPB11/RPC19 RNA polymerase subunit family.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS09375 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3D4 ^@ Similarity ^@ Belongs to the short-chain dehydrogenases/reductases (SDR) family. http://togogenome.org/gene/47304:DFR88_RS06290 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYV6 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the prefoldin subunit beta family.|||Cytoplasm|||Heterohexamer of two alpha and four beta subunits.|||Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. http://togogenome.org/gene/47304:DFR88_RS09915 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5A1 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS11175 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1L9 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS10190 ^@ http://purl.uniprot.org/uniprot/A0A4D8SH02 ^@ Similarity ^@ Belongs to the PDCD5 family. http://togogenome.org/gene/47304:DFR88_RS07465 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTU0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL13 family.|||Part of the 50S ribosomal subunit.|||This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. http://togogenome.org/gene/47304:DFR88_RS05280 ^@ http://purl.uniprot.org/uniprot/A0A4D8S533 ^@ Similarity ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/47304:DFR88_RS06325 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWL6 ^@ Activity Regulation|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase T1A family.|||Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.|||Cytoplasm|||The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.|||The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity. http://togogenome.org/gene/47304:DFR88_RS05925 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYQ0 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the dCTP deaminase family.|||Catalyzes the deamination of dCTP to dUTP.|||Homotrimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS03890 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVF1 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the QueC family.|||Binds 1 zinc ion per subunit.|||Catalyzes the ATP-dependent conversion of 7-carboxy-7-deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). http://togogenome.org/gene/47304:DFR88_RS05455 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYH1 ^@ Similarity ^@ Belongs to the UDPGP type 2 family. http://togogenome.org/gene/47304:DFR88_RS05860 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5E2 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.|||Cytoplasm|||Involved in both the arginine and lysine biosynthetic pathways.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08480 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6R5 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the HisA/HisF family.|||Cytoplasm|||Heterodimer of HisH and HisF.|||IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. http://togogenome.org/gene/47304:DFR88_RS03105 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRS6 ^@ Caution|||Function|||Similarity ^@ Belongs to the CDC6/cdc18 family.|||Involved in regulation of DNA replication.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS09505 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU52 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. SRP54 subfamily.|||Composed of three domains: the N-terminal N domain, which is responsible for interactions with the ribosome, the central G domain, which binds GTP, and the C-terminal M domain, which binds the RNA and the signal sequence of the RNC.|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY.|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. Archaeal SRP consists of a 7S RNA molecule of 300 nucleotides and two protein subunits: SRP54 and SRP19. http://togogenome.org/gene/47304:DFR88_RS08510 ^@ http://purl.uniprot.org/uniprot/A0A4D8S572 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS06165 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5K8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL6 family.|||Part of the 50S ribosomal subunit.|||This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center. http://togogenome.org/gene/47304:DFR88_RS04790 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6Q6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS10060 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0Y7 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SHMT family.|||Catalyzes the reversible interconversion of serine and glycine with a modified folate serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS10130 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1W2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein P1/P2 family.|||Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.|||Part of the 50S ribosomal subunit. Homodimer, it forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion. http://togogenome.org/gene/47304:DFR88_RS07865 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4B7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS02865 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3V2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase NEP1 family.|||Homodimer.|||Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. http://togogenome.org/gene/47304:DFR88_RS08655 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZU3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic-type primase large subunit family.|||Binds 1 [4Fe-4S] cluster.|||Heterodimer of a small subunit (PriS) and a large subunit (PriL).|||Regulatory subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Stabilizes and modulates the activity of the small subunit, increasing the rate of DNA synthesis, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair. http://togogenome.org/gene/47304:DFR88_RS04730 ^@ http://purl.uniprot.org/uniprot/A0A4D8SDL9 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/47304:DFR88_RS04000 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4F2 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS04065 ^@ http://purl.uniprot.org/uniprot/A0A4D8SDA9 ^@ Similarity ^@ Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family.|||Belongs to the radical SAM superfamily. NifB family. http://togogenome.org/gene/47304:DFR88_RS07135 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWH5 ^@ Caution|||Cofactor|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eS31 family.|||Binds 1 zinc ion per subunit.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS03135 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX90 ^@ Similarity ^@ Belongs to the band 7/mec-2 family. http://togogenome.org/gene/47304:DFR88_RS08150 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6J3 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the SUA5 family.|||Cytoplasm|||Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. http://togogenome.org/gene/47304:DFR88_RS07505 ^@ http://purl.uniprot.org/uniprot/A0A4D8S464 ^@ Similarity ^@ Belongs to the FPP/GGPP synthase family. http://togogenome.org/gene/47304:DFR88_RS02440 ^@ http://purl.uniprot.org/uniprot/A0A4D8S182 ^@ Function|||Similarity|||Subunit ^@ Belongs to the LeuD family. LeuD type 2 subfamily.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/47304:DFR88_RS06355 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1M1 ^@ Similarity ^@ In the C-terminal section; belongs to the transferase hexapeptide repeat family.|||In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family. http://togogenome.org/gene/47304:DFR88_RS06185 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3I3 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS4 family. http://togogenome.org/gene/47304:DFR88_RS09835 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGT5 ^@ Similarity ^@ Belongs to the acylphosphatase family. http://togogenome.org/gene/47304:DFR88_RS10635 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0Q6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS05545 ^@ http://purl.uniprot.org/uniprot/A0A4D8S364 ^@ Similarity ^@ Belongs to the phosphohexose mutase family. http://togogenome.org/gene/47304:DFR88_RS08590 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6T0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the glutaminase PdxT/SNO family.|||Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.|||In the presence of PdxS, forms a dodecamer of heterodimers. Only shows activity in the heterodimer. http://togogenome.org/gene/47304:DFR88_RS12005 ^@ http://purl.uniprot.org/uniprot/A0A4D8S670 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS11840 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6C4 ^@ Caution|||Function|||Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. Glucose 1-dehydrogenase subfamily.|||Catalyzes the NAD(P)(+)-dependent oxidation of D-glucose to D-gluconate via gluconolactone. Can utilize both NAD(+) and NADP(+) as electron acceptor. Is involved in the degradation of glucose through a non-phosphorylative variant of the Entner-Doudoroff pathway.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS10705 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5K5 ^@ Caution|||Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peroxiredoxin family. Prx6 subfamily.|||Cytoplasm|||Homodecamer. Pentamer of dimers that assemble into a ring structure.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||The active site is a conserved redox-active cysteine residue, the peroxidatic cysteine (C(P)), which makes the nucleophilic attack on the peroxide substrate. The peroxide oxidizes the C(P)-SH to cysteine sulfenic acid (C(P)-SOH), which then reacts with another cysteine residue, the resolving cysteine (C(R)), to form a disulfide bridge. The disulfide is subsequently reduced by an appropriate electron donor to complete the catalytic cycle. In this 1-Cys peroxiredoxin, no C(R) is present and C(P) instead forms a disulfide with a cysteine from another protein or with a small thiol molecule.|||Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. http://togogenome.org/gene/47304:DFR88_RS11025 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5Q9 ^@ Similarity ^@ Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. http://togogenome.org/gene/47304:DFR88_RS03880 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1Z6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS00445 ^@ http://purl.uniprot.org/uniprot/A0A4D8SID4 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS07080 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6V5 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS25 family. http://togogenome.org/gene/47304:DFR88_RS02945 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX80 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. http://togogenome.org/gene/47304:DFR88_RS06890 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWY2 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS03655 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXJ6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the MscS (TC 1.A.23) family.|||Membrane http://togogenome.org/gene/47304:DFR88_RS06755 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWV3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SEC61-beta family.|||Cell membrane|||Component of the protein translocase complex. Heterotrimer consisting of alpha (SecY), beta (SecG) and gamma (SecE) subunits. Can form oligomers of the heterotrimer.|||Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex.|||Membrane http://togogenome.org/gene/47304:DFR88_RS05375 ^@ http://purl.uniprot.org/uniprot/A0A4D8S302 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS10930 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5V3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the GcvH family.|||Binds 1 lipoyl cofactor covalently.|||The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. http://togogenome.org/gene/47304:DFR88_RS05370 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS67 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TmcA family.|||Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||nucleolus http://togogenome.org/gene/47304:DFR88_RS11115 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0Y4 ^@ Similarity ^@ Belongs to the DNA polymerase type-B family. http://togogenome.org/gene/47304:DFR88_RS06680 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWU1 ^@ Function|||Similarity ^@ Belongs to the eukaryotic RecA-like protein family.|||Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. http://togogenome.org/gene/47304:DFR88_RS08920 ^@ http://purl.uniprot.org/uniprot/A0A4D8S308 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the CSL4 family.|||Component of the archaeal exosome complex. Forms a trimer of Rrp4 and/or Csl4 subunits. The trimer associates with an hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. Interacts with DnaG.|||Cytoplasm|||Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. http://togogenome.org/gene/47304:DFR88_RS04005 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXR1 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS06140 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1G5 ^@ Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL30 family.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS09295 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0K0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic-type primase small subunit family.|||Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. May also play a role in DNA repair.|||Heterodimer of a small subunit (PriS) and a large subunit (PriL). http://togogenome.org/gene/47304:DFR88_RS09300 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGH8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PCNA family.|||Homotrimer. The subunits circularize to form a toroid; DNA passes through its center. Replication factor C (RFC) is required to load the toroid on the DNA.|||Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. http://togogenome.org/gene/47304:DFR88_RS05680 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT03 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CobD/CbiB family.|||Cell membrane|||Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Membrane http://togogenome.org/gene/47304:DFR88_RS10185 ^@ http://purl.uniprot.org/uniprot/A0A4D8S113 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL39 family. http://togogenome.org/gene/47304:DFR88_RS10125 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGY9 ^@ Cofactor|||Domain|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.|||Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS09660 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0R2 ^@ Function|||Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.|||Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. http://togogenome.org/gene/47304:DFR88_RS09805 ^@ http://purl.uniprot.org/uniprot/A0A4D8S581 ^@ Function|||Similarity ^@ Belongs to the threonine synthase family.|||Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine. http://togogenome.org/gene/47304:DFR88_RS09090 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6S4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS06145 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSJ6 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS5 family.|||Part of the 30S ribosomal subunit. Contacts protein S4.|||The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S4 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/47304:DFR88_RS07825 ^@ http://purl.uniprot.org/uniprot/A0A4D8S471 ^@ Similarity|||Subunit ^@ Belongs to the Glu/Leu/Phe/Val dehydrogenases family.|||Homohexamer. http://togogenome.org/gene/47304:DFR88_RS07330 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTS5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS05635 ^@ http://purl.uniprot.org/uniprot/A0A4D8S592 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).|||Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.|||Binds 3 Mg(2+) cations per subunit. The strongest magnesium site (Mg1) is bound to the beta- and gamma-phosphates of ATP and four water molecules complete its coordination sphere.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS01375 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQV6 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS04435 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXY8 ^@ Similarity ^@ Belongs to the DNA photolyase family. http://togogenome.org/gene/47304:DFR88_RS06850 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1X4 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome association which triggers gate opening, and supports translocation of unfolded substrates.|||Belongs to the AAA ATPase family.|||Consists of three main regions, an N-terminal coiled-coil domain that may assist in substrate recognition, an interdomain involved in PAN hexamerization, and a C-terminal ATPase domain of the AAA type.|||Cytoplasm|||Homohexamer. The hexameric complex has a two-ring architecture resembling a top hat that caps the 20S proteasome core at one or both ends. Upon ATP-binding, the C-terminus of PAN interacts with the alpha-rings of the proteasome core by binding to the intersubunit pockets. http://togogenome.org/gene/47304:DFR88_RS10855 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6U5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.|||Membrane http://togogenome.org/gene/47304:DFR88_RS10410 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7R6 ^@ Function|||Miscellaneous|||Similarity|||Subcellular Location Annotation ^@ Belongs to the MGMT family.|||Cytoplasm|||Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.|||This enzyme catalyzes only one turnover and therefore is not strictly catalytic. According to one definition, an enzyme is a biocatalyst that acts repeatedly and over many reaction cycles. http://togogenome.org/gene/47304:DFR88_RS01180 ^@ http://purl.uniprot.org/uniprot/A0A4D8SBP4 ^@ Similarity ^@ Belongs to the sterol desaturase family. http://togogenome.org/gene/47304:DFR88_RS09590 ^@ http://purl.uniprot.org/uniprot/A0A4D8RY69 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).|||Belongs to the GatC family.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/47304:DFR88_RS08410 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6N9 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily.|||Binds 1 FMN per subunit.|||Catalyzes the conversion of dihydroorotate to orotate.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS06195 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1I0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL14 family.|||Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges. http://togogenome.org/gene/47304:DFR88_RS04875 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVY2 ^@ Similarity ^@ Belongs to the HerA family. http://togogenome.org/gene/47304:DFR88_RS10155 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5E8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SecE/SEC61-gamma family.|||Cell membrane|||Component of the Sec protein translocase complex. Heterotrimer consisting of SecY (alpha), SecG (beta) and SecE (gamma) subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. May interact with SecDF, and other proteins may be involved.|||Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. http://togogenome.org/gene/47304:DFR88_RS07590 ^@ http://purl.uniprot.org/uniprot/A0A4D8S435 ^@ Similarity ^@ Belongs to the CinA family. http://togogenome.org/gene/47304:DFR88_RS07995 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2Q1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the CDP-archaeol synthase family.|||Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1-phosphate (DGGGP) and CTP. This reaction is the third ether-bond-formation step in the biosynthesis of archaeal membrane lipids.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS06930 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1Y1 ^@ Domain|||Function|||Similarity|||Subunit ^@ Belongs to the FBP aldolase/phosphatase family.|||Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3-phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P).|||Consists of a single catalytic domain, but remodels its active-site architecture via a large structural change to exhibit dual activities.|||Homooctamer; dimer of tetramers. http://togogenome.org/gene/47304:DFR88_RS07540 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX94 ^@ Function|||Similarity ^@ Belongs to the archaeal SPP-like hydrolase family.|||Catalyzes the dephosphorylation of 2-phosphoglycolate. http://togogenome.org/gene/47304:DFR88_RS09710 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7C1 ^@ Function|||Similarity ^@ Belongs to the ribonucleoside diphosphate reductase class-2 family.|||Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. http://togogenome.org/gene/47304:DFR88_RS08620 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4M8 ^@ Function|||Similarity ^@ Belongs to the V-ATPase D subunit family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. http://togogenome.org/gene/47304:DFR88_RS10145 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3P9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL11 family.|||Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.|||Part of the ribosomal stalk of the 50S ribosomal subunit. Interacts with L10 and the large rRNA to form the base of the stalk. L10 forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex. http://togogenome.org/gene/47304:DFR88_RS07270 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZA0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family.|||Catalyzes the attachment of tryptophan to tRNA(Trp).|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS09520 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUU2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TOP6B family.|||Homodimer. Heterotetramer of two Top6A and two Top6B chains.|||Relaxes both positive and negative superturns and exhibits a strong decatenase activity. http://togogenome.org/gene/47304:DFR88_RS10165 ^@ http://purl.uniprot.org/uniprot/A0A4D8SJ73 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the prefoldin alpha subunit family.|||Belongs to the prefoldin subunit alpha family.|||Cytoplasm|||Heterohexamer of two alpha and four beta subunits.|||Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding. http://togogenome.org/gene/47304:DFR88_RS08425 ^@ http://purl.uniprot.org/uniprot/A0A4D8S027 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the UPF0056 (MarC) family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS09930 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7G8 ^@ Similarity ^@ Belongs to the AAA ATPase family. http://togogenome.org/gene/47304:DFR88_RS06535 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3P8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the NusA family.|||Cytoplasm|||Participates in transcription termination. http://togogenome.org/gene/47304:DFR88_RS10050 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7J7 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.|||Cytoplasm|||Homotetramer. http://togogenome.org/gene/47304:DFR88_RS11530 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1U7 ^@ Function|||Subunit ^@ Catalyzes the synthesis of GMP from XMP.|||Heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). http://togogenome.org/gene/47304:DFR88_RS04095 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS83 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS03165 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1L1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.|||Catalyzes the reversible phosphorylation of S-methyl-5'-thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates.|||Homohexamer. Dimer of a homotrimer. http://togogenome.org/gene/47304:DFR88_RS05030 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSP1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the heme-copper respiratory oxidase family.|||Membrane http://togogenome.org/gene/47304:DFR88_RS05625 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWA6 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the PTH2 family.|||Cytoplasm|||The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. http://togogenome.org/gene/47304:DFR88_RS03705 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS17 ^@ Similarity ^@ Belongs to the UPF0282 family. http://togogenome.org/gene/47304:DFR88_RS04290 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVR1 ^@ Similarity ^@ Belongs to the AAA ATPase family. CDC48 subfamily. http://togogenome.org/gene/47304:DFR88_RS10260 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW27 ^@ Similarity|||Subunit ^@ Belongs to the GTP cyclohydrolase I family.|||Homopolymer. http://togogenome.org/gene/47304:DFR88_RS08315 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZN5 ^@ Function|||Subcellular Location Annotation|||Subunit ^@ Cytoplasm|||Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.|||Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL. http://togogenome.org/gene/47304:DFR88_RS06905 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6M9 ^@ Similarity ^@ Belongs to the TCP-1 chaperonin family. http://togogenome.org/gene/47304:DFR88_RS06115 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5J5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the cytidylate kinase family. Type 2 subfamily.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS07375 ^@ http://purl.uniprot.org/uniprot/A0A4D8S447 ^@ Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family.|||Binds 3 Mg(2+) ions per subunit.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS03440 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2B8 ^@ Similarity ^@ Belongs to the AAA ATPase family. http://togogenome.org/gene/47304:DFR88_RS08865 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1U2 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the shikimate dehydrogenase family.|||Homodimer.|||Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS09745 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU92 ^@ Similarity ^@ Belongs to the TCP-1 chaperonin family. http://togogenome.org/gene/47304:DFR88_RS08025 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVY9 ^@ Similarity ^@ Belongs to the UPF0147 family. http://togogenome.org/gene/47304:DFR88_RS09530 ^@ http://purl.uniprot.org/uniprot/A0A4D8S793 ^@ Cofactor|||Similarity|||Subunit ^@ Belongs to the RtcB family.|||Binds 2 manganese ions per subunit.|||Monomer. http://togogenome.org/gene/47304:DFR88_RS04815 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVX1 ^@ Similarity ^@ Belongs to the aldehyde dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS00150 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVQ9 ^@ Function|||Similarity|||Subunit ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.|||Homodimer.|||Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). http://togogenome.org/gene/47304:DFR88_RS10160 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV59 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GTP-binding SRP family. FtsY subfamily.|||Cell membrane|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. http://togogenome.org/gene/47304:DFR88_RS06955 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWZ3 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the glycerol-1-phosphate dehydrogenase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the NAD(P)H-dependent reduction of dihydroxyacetonephosphate (DHAP or glycerone phosphate) to glycerol 1-phosphate (G1P). The G1P thus generated is used as the glycerophosphate backbone of phospholipids in the cellular membranes of Archaea.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS09675 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1V2 ^@ Function|||Similarity|||Subunit ^@ Belongs to the methyltransferase superfamily. Fibrillarin family.|||Interacts with nop5. Component of box C/D small ribonucleoprotein (sRNP) particles that contain rpl7ae, FlpA and nop5, plus a guide RNA.|||Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA. http://togogenome.org/gene/47304:DFR88_RS09515 ^@ http://purl.uniprot.org/uniprot/A0A4D8S532 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TOP6A family.|||Homodimer. Heterotetramer of two Top6A and two Top6B chains.|||Relaxes both positive and negative superturns and exhibits a strong decatenase activity. http://togogenome.org/gene/47304:DFR88_RS08475 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZR2 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the histidinol dehydrogenase family.|||Binds 1 zinc ion per subunit.|||Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine. http://togogenome.org/gene/47304:DFR88_RS01005 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWB5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TPP enzyme family.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS08485 ^@ http://purl.uniprot.org/uniprot/A0A4D8S038 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the imidazoleglycerol-phosphate dehydratase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS00870 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW30 ^@ Similarity ^@ Belongs to the BtpA family. http://togogenome.org/gene/47304:DFR88_RS08605 ^@ http://purl.uniprot.org/uniprot/A0A4D8SG27 ^@ Domain|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 3 subfamily.|||Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).|||Consists of three domains: the N-terminal catalytic domain, the anticodon-binding domain and the C-terminal extension.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS04025 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0B3 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS10065 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGX7 ^@ Similarity ^@ Belongs to the HMG-CoA reductase family. http://togogenome.org/gene/47304:DFR88_RS06255 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1P0 ^@ Similarity ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. http://togogenome.org/gene/47304:DFR88_RS09320 ^@ http://purl.uniprot.org/uniprot/A0A4D8S501 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the RNase Z family.|||Binds 2 Zn(2+) ions.|||Homodimer.|||Zinc phosphodiesterase, which displays some tRNA 3'-processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA. http://togogenome.org/gene/47304:DFR88_RS06990 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVW3 ^@ Similarity ^@ Belongs to the snRNP Sm proteins family. http://togogenome.org/gene/47304:DFR88_RS10085 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5D5 ^@ Cofactor|||Function|||PTM|||Similarity|||Subunit ^@ Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.|||Binds 1 pyruvoyl group covalently per subunit.|||Heterooctamer of four alpha and four beta chains arranged as a tetramer of alpha/beta heterodimers.|||Is synthesized initially as an inactive proenzyme. Formation of the active enzyme involves a self-maturation process in which the active site pyruvoyl group is generated from an internal serine residue via an autocatalytic post-translational modification. Two non-identical subunits are generated from the proenzyme in this reaction, and the pyruvate is formed at the N-terminus of the alpha chain, which is derived from the carboxyl end of the proenzyme. The post-translation cleavage follows an unusual pathway, termed non-hydrolytic serinolysis, in which the side chain hydroxyl group of the serine supplies its oxygen atom to form the C-terminus of the beta chain, while the remainder of the serine residue undergoes an oxidative deamination to produce ammonia and the pyruvoyl group blocking the N-terminus of the alpha chain.|||Specifically catalyzes the decarboxylation of L-arginine to agmatine. Has no S-adenosylmethionine decarboxylase (AdoMetDC) activity. http://togogenome.org/gene/47304:DFR88_RS03330 ^@ http://purl.uniprot.org/uniprot/A0A4D8S298 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. Thiolase family. http://togogenome.org/gene/47304:DFR88_RS06100 ^@ http://purl.uniprot.org/uniprot/A0A4D8RT68 ^@ Function|||Similarity ^@ Activates the tRNA-splicing ligase complex by facilitating the enzymatic turnover of catalytic subunit RtcB. Acts by promoting the guanylylation of RtcB, a key intermediate step in tRNA ligation. Can also alter the NTP specificity of RtcB such that ATP, dGTP or ITP is used efficiently.|||Belongs to the archease family. http://togogenome.org/gene/47304:DFR88_RS06360 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSR8 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS1 family. http://togogenome.org/gene/47304:DFR88_RS07530 ^@ http://purl.uniprot.org/uniprot/A0A4D8S426 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL8 family.|||Cytoplasm|||Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.|||Part of the 50S ribosomal subunit. Probably part of the RNase P complex. http://togogenome.org/gene/47304:DFR88_RS09465 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUS9 ^@ Function|||Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. Homocitrate synthase LYS20/LYS21 subfamily.|||Catalyzes the aldol-type condensation of 2-oxoglutarate with acetyl-CoA to yield homocitrate. Carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. http://togogenome.org/gene/47304:DFR88_RS00035 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVN8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the Dps family.|||Homododecamer. The 12 identical subunits form a hollow sphere into which the mineral iron core of up to 300 Fe(3+) can be deposited.|||Protects DNA from oxidative damage by sequestering intracellular Fe2+ ion and storing it in the form of Fe3+ oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe2+ ions, which prevents hydroxyl radical production by the Fenton reaction.|||nucleoid http://togogenome.org/gene/47304:DFR88_RS05825 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3B9 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the UPP synthase family.|||Binds 2 magnesium ions per subunit.|||Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS10820 ^@ http://purl.uniprot.org/uniprot/A0A4D8S410 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07160 ^@ http://purl.uniprot.org/uniprot/A0A4D8S404 ^@ Function|||Similarity|||Subunit ^@ Belongs to the tRNA-intron endonuclease family. Archaeal short subfamily.|||Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.|||Homotetramer; although the tetramer contains four active sites, only two participate in the cleavage. Therefore, it should be considered as a dimer of dimers. http://togogenome.org/gene/47304:DFR88_RS07845 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6E5 ^@ Similarity ^@ Belongs to the uracil-DNA glycosylase (UDG) superfamily. Type 4 (UDGa) family. http://togogenome.org/gene/47304:DFR88_RS03410 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRW9 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/47304:DFR88_RS03415 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV78 ^@ Similarity ^@ Belongs to the methylmalonyl-CoA epimerase family. http://togogenome.org/gene/47304:DFR88_RS01955 ^@ http://purl.uniprot.org/uniprot/A0A4D8SC67 ^@ Similarity|||Subunit ^@ Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family.|||Heterodimer of a large and a small subunit. http://togogenome.org/gene/47304:DFR88_RS03375 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXE3 ^@ Subunit ^@ Homodimer. http://togogenome.org/gene/47304:DFR88_RS00505 ^@ http://purl.uniprot.org/uniprot/A0A4D8S029 ^@ Subunit ^@ Heterotetramer of one alpha, one beta, one delta and one gamma chain. http://togogenome.org/gene/47304:DFR88_RS07760 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTY7 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS08985 ^@ http://purl.uniprot.org/uniprot/A0A4D8S702 ^@ Function|||Similarity|||Subunit ^@ Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.|||Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS08880 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0B7 ^@ Similarity ^@ Belongs to the EPSP synthase family. http://togogenome.org/gene/47304:DFR88_RS05290 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYD3 ^@ Similarity ^@ Belongs to the thioesterase PaaI family. http://togogenome.org/gene/47304:DFR88_RS02335 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWZ2 ^@ Function ^@ Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system. http://togogenome.org/gene/47304:DFR88_RS03325 ^@ http://purl.uniprot.org/uniprot/A0A4D8SCW6 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the methylthiotransferase family. CDKAL1 subfamily.|||Binds 1 or 2 [4Fe-4S] cluster. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.|||Catalyzes the methylthiolation of N6-threonylcarbamoyladenosine (t(6)A), leading to the formation of 2-methylthio-N6-threonylcarbamoyladenosine (ms(2)t(6)A) at position 37 in tRNAs that read codons beginning with adenine. http://togogenome.org/gene/47304:DFR88_RS10135 ^@ http://purl.uniprot.org/uniprot/A0A4D8S329 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL10 family.|||Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.|||Part of the 50S ribosomal subunit. Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Forms a heptameric L10(L12)2(L12)2(L12)2 complex, where L10 forms an elongated spine to which the L12 dimers bind in a sequential fashion. http://togogenome.org/gene/47304:DFR88_RS01480 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0P8 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the UppP family.|||Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP).|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS11930 ^@ http://purl.uniprot.org/uniprot/A0A4D8S238 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS08200 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXJ7 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/47304:DFR88_RS05855 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWE2 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the acetylglutamate kinase family. LysZ subfamily.|||Cytoplasm|||Involved in both the arginine and lysine biosynthetic pathways. Phosphorylates the LysW-bound precursors glutamate (for arginine biosynthesis), respectively alpha-aminoadipate (for lysine biosynthesis). http://togogenome.org/gene/47304:DFR88_RS02230 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6I5 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS01065 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW74 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS10270 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUI8 ^@ Caution|||Cofactor|||Function|||Similarity ^@ Belongs to the radical SAM superfamily. MoaA family.|||Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.|||Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS02435 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQR8 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the aconitase/IPM isomerase family. LeuC type 2 subfamily.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.|||Heterodimer of LeuC and LeuD. http://togogenome.org/gene/47304:DFR88_RS06650 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3S1 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the adenylosuccinate synthetase family.|||Binds 1 Mg(2+) ion per subunit.|||Cytoplasm|||Homodimer.|||Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP. http://togogenome.org/gene/47304:DFR88_RS08625 ^@ http://purl.uniprot.org/uniprot/A0A4D8S319 ^@ Function|||Similarity ^@ Belongs to the ATPase alpha/beta chains family.|||Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit. http://togogenome.org/gene/47304:DFR88_RS08305 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXL3 ^@ Cofactor|||Function|||Similarity ^@ Binds 1 Mg(2+) ion per subunit.|||Binds 1 [4Fe-4S] cluster per subunit.|||Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.|||In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family. http://togogenome.org/gene/47304:DFR88_RS05670 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSB4 ^@ Function|||Similarity ^@ Belongs to the CobB/CobQ family. CobQ subfamily.|||Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. http://togogenome.org/gene/47304:DFR88_RS00640 ^@ http://purl.uniprot.org/uniprot/A0A4D8SBF1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TPP enzyme family.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS06690 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ16 ^@ Similarity ^@ Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. http://togogenome.org/gene/47304:DFR88_RS05610 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSA7 ^@ Similarity ^@ Belongs to the AAA ATPase family. CDC48 subfamily. http://togogenome.org/gene/47304:DFR88_RS03720 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXK8 ^@ Similarity ^@ Belongs to the HAD-like hydrolase superfamily. http://togogenome.org/gene/47304:DFR88_RS07195 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ85 ^@ Similarity ^@ Belongs to the SUI1 family. http://togogenome.org/gene/47304:DFR88_RS01255 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQ72 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS03620 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2E0 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RNA 3'-terminal cyclase family. Type 1 subfamily.|||Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS06530 ^@ http://purl.uniprot.org/uniprot/A0A4D8SEW5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS12 family.|||Part of the 30S ribosomal subunit.|||With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. http://togogenome.org/gene/47304:DFR88_RS07440 ^@ http://purl.uniprot.org/uniprot/A0A4D8S456 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS13 family.|||Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement.|||Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome. http://togogenome.org/gene/47304:DFR88_RS09680 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3H5 ^@ Similarity ^@ Belongs to the NOP5/NOP56 family. http://togogenome.org/gene/47304:DFR88_RS02800 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3U3 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the NnrD/CARKD family.|||Belongs to the NnrE/AIBP family.|||Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.|||Binds 1 potassium ion per subunit.|||Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.|||Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.|||Homotetramer.|||In the C-terminal section; belongs to the NnrD/CARKD family.|||In the N-terminal section; belongs to the NnrE/AIBP family.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS01315 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0K5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS07445 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2D0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS4 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.|||Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.|||With S5 and S12 plays an important role in translational accuracy. http://togogenome.org/gene/47304:DFR88_RS01925 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0X9 ^@ Similarity ^@ Belongs to the HypD family. http://togogenome.org/gene/47304:DFR88_RS07715 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6C8 ^@ Subcellular Location Annotation ^@ Cell membrane http://togogenome.org/gene/47304:DFR88_RS03730 ^@ http://purl.uniprot.org/uniprot/A0A4D8SD45 ^@ Similarity ^@ Belongs to the 7 kDa DNA-binding/endoribonuclease P2 family. http://togogenome.org/gene/47304:DFR88_RS06600 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1S9 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).|||Belongs to the GatB/GatE family. GatB subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/47304:DFR88_RS08180 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTI9 ^@ Similarity ^@ Belongs to the transcriptional regulatory CopG/NikR family. http://togogenome.org/gene/47304:DFR88_RS02850 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRN8 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic release factor 1 family.|||Cytoplasm|||Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.|||Heterodimer of two subunits, one of which binds GTP. http://togogenome.org/gene/47304:DFR88_RS07225 ^@ http://purl.uniprot.org/uniprot/A0A4D8S943 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS05815 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYM1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the SRP19 family.|||Cytoplasm|||Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.|||Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. Archaeal SRP consists of a 7S RNA molecule of 300 nucleotides and two protein subunits: SRP54 and SRP19. http://togogenome.org/gene/47304:DFR88_RS08395 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4G9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the PyrI family.|||Binds 1 zinc ion per subunit.|||Contains catalytic and regulatory chains.|||Involved in allosteric regulation of aspartate carbamoyltransferase. http://togogenome.org/gene/47304:DFR88_RS06550 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4Z8 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNA polymerase beta' chain family.|||Binds at least 2 Zn(2+) per subunit.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms the clamp head domain.|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS06200 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSL7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS17 family.|||One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS06445 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTC2 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL14 family. http://togogenome.org/gene/47304:DFR88_RS08255 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6K5 ^@ Similarity ^@ Belongs to the RimK family. LysX subfamily. http://togogenome.org/gene/47304:DFR88_RS11170 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0Z3 ^@ Similarity ^@ Belongs to the DNA repair enzymes AP/ExoA family. http://togogenome.org/gene/47304:DFR88_RS01070 ^@ http://purl.uniprot.org/uniprot/A0A4D8SBM4 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the sirtuin family. Class U subfamily.|||Binds 1 zinc ion per subunit.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription. http://togogenome.org/gene/47304:DFR88_RS09550 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGM1 ^@ Caution|||Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Both the DNA unwinding and positive supercoiling activities require the cooperation of both domains. The cooperative action between the helicase-like and the topoisomerase domains is specific. The helicase-like domain probably does not directly unwind DNA but acts more likely by driving ATP-dependent conformational changes within the whole enzyme, functioning more like a protein motor. The 'latch' region of the N-terminal domain plays a regulatory role in the enzyme, repressing topoisomerase activity in the absence of ATP and therefore preventing the enzyme from acting as an ATP-independent relaxing enzyme; it also helps to coordinate nucleotide hydrolysis by the ATPase domain with the supercoiling activity of the topoisomerase domain.|||In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family.|||In the N-terminal section; belongs to the DEAD box helicase family. DDVD subfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication.|||Monomer.|||This enzyme is the only unique feature of hyperthermophilic bacteria/archaea discovered so far. It appears to be essential for adaptation to life at high temperatures. http://togogenome.org/gene/47304:DFR88_RS03610 ^@ http://purl.uniprot.org/uniprot/A0A4D8SD23 ^@ Similarity ^@ Belongs to the glutamine synthetase family. http://togogenome.org/gene/47304:DFR88_RS06135 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3H3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL15 family.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS04725 ^@ http://purl.uniprot.org/uniprot/A0A4D8RY32 ^@ Similarity ^@ Belongs to the enoyl-CoA hydratase/isomerase family. http://togogenome.org/gene/47304:DFR88_RS06640 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ36 ^@ Function|||Similarity ^@ Belongs to the phosphohexose mutase family.|||Catalyzes the ATP- and formate-dependent formylation of 5-aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates. http://togogenome.org/gene/47304:DFR88_RS10460 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYL6 ^@ Similarity ^@ Belongs to the diphosphomevalonate decarboxylase family. http://togogenome.org/gene/47304:DFR88_RS06615 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTF4 ^@ Similarity ^@ Belongs to the HTP reductase family. http://togogenome.org/gene/47304:DFR88_RS08355 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXM4 ^@ Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. http://togogenome.org/gene/47304:DFR88_RS06925 ^@ http://purl.uniprot.org/uniprot/A0A4D8S509 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS17 family. http://togogenome.org/gene/47304:DFR88_RS08160 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZX7 ^@ Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. http://togogenome.org/gene/47304:DFR88_RS06730 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3P0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA.|||Belongs to the TiaS family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS01735 ^@ http://purl.uniprot.org/uniprot/A0A4D8SC27 ^@ Function ^@ Catalyzes the formation of sulfite from adenosine 5'-phosphosulfate (APS) using thioredoxin as an electron donor. http://togogenome.org/gene/47304:DFR88_RS01170 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWE7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS09200 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU02 ^@ Similarity ^@ Belongs to the UDPGP type 2 family. http://togogenome.org/gene/47304:DFR88_RS03540 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXH6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the archaeal phosphopantothenate synthetase family.|||Catalyzes the condensation of (R)-4-phosphopantoate and beta-alanine to 4'-phosphopantothenate in the CoA biosynthesis pathway.|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS02560 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1A1 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.|||Membrane http://togogenome.org/gene/47304:DFR88_RS02575 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3Q4 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the VKOR family.|||Membrane http://togogenome.org/gene/47304:DFR88_RS06765 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ26 ^@ Subcellular Location Annotation ^@ Nucleus http://togogenome.org/gene/47304:DFR88_RS10255 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5C5 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the glutamine synthetase family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS10450 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5J9 ^@ Similarity ^@ Belongs to the PNP/UDP phosphorylase family. http://togogenome.org/gene/47304:DFR88_RS08910 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUI6 ^@ Similarity ^@ Belongs to the universal ribosomal protein uL16 family. http://togogenome.org/gene/47304:DFR88_RS10005 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWN2 ^@ Similarity ^@ Belongs to the UPF0051 (ycf24) family. http://togogenome.org/gene/47304:DFR88_RS04930 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVZ4 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the peptidase M32 family.|||Binds 1 zinc ion per subunit.|||Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues. http://togogenome.org/gene/47304:DFR88_RS00840 ^@ http://purl.uniprot.org/uniprot/A0A4D8SBH8 ^@ Function|||Similarity ^@ Belongs to the CRISPR-associated protein Cas5 family. Subtype I-A/Apern subfamily.|||CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). http://togogenome.org/gene/47304:DFR88_RS04100 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVJ0 ^@ Subunit ^@ Heterotetramer of one alpha, one beta, one delta and one gamma chain. http://togogenome.org/gene/47304:DFR88_RS08775 ^@ http://purl.uniprot.org/uniprot/A0A4D8SG71 ^@ Function|||Similarity ^@ Belongs to the iron/manganese superoxide dismutase family.|||Destroys radicals which are normally produced within the cells and which are toxic to biological systems. http://togogenome.org/gene/47304:DFR88_RS10325 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5H5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the NAC-alpha family.|||Contacts the emerging nascent chain on the ribosome.|||Homodimer. Interacts with the ribosome. Binds ribosomal RNA. http://togogenome.org/gene/47304:DFR88_RS05250 ^@ http://purl.uniprot.org/uniprot/A0A4D8S314 ^@ Similarity ^@ Belongs to the citrate synthase family. http://togogenome.org/gene/47304:DFR88_RS06170 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYT6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS8 family.|||One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS02095 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUK9 ^@ Similarity ^@ Belongs to the UPF0248 family. http://togogenome.org/gene/47304:DFR88_RS11080 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5R9 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the triosephosphate isomerase family.|||Cytoplasm|||Homotetramer; dimer of dimers.|||Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P). http://togogenome.org/gene/47304:DFR88_RS07030 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX08 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS6 family. http://togogenome.org/gene/47304:DFR88_RS05820 ^@ http://purl.uniprot.org/uniprot/A0A4D8SED9 ^@ Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eS8 family.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS07185 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX41 ^@ Similarity ^@ Belongs to the arginase family. Agmatinase subfamily. http://togogenome.org/gene/47304:DFR88_RS09975 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7I0 ^@ Similarity ^@ Belongs to the GcvT family. http://togogenome.org/gene/47304:DFR88_RS06190 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZN3 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL24 family.|||Located at the polypeptide exit tunnel on the outside of the subunit.|||One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS09250 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU15 ^@ Function|||Similarity ^@ Belongs to the NOP10 family.|||Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. http://togogenome.org/gene/47304:DFR88_RS05050 ^@ http://purl.uniprot.org/uniprot/A0A4D8RY92 ^@ Similarity ^@ Belongs to the cytochrome c oxidase subunit 2 family. http://togogenome.org/gene/47304:DFR88_RS06480 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3N5 ^@ Function|||Similarity ^@ Belongs to the DMRL synthase family.|||Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. http://togogenome.org/gene/47304:DFR88_RS11945 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4L2 ^@ Similarity ^@ Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS07310 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6P4 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS06585 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZ22 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS28 family. http://togogenome.org/gene/47304:DFR88_RS08310 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6L8 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the FGAMS family.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Monomer. Part of the FGAM synthase complex composed of 1 PurL, 1 PurQ and 2 PurS subunits.|||Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL. http://togogenome.org/gene/47304:DFR88_RS01365 ^@ http://purl.uniprot.org/uniprot/A0A4D8RQ89 ^@ Subcellular Location Annotation ^@ Cell membrane|||Membrane http://togogenome.org/gene/47304:DFR88_RS09595 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7A1 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).|||Belongs to the amidase family. GatA subfamily.|||Heterotrimer of A, B and C subunits. http://togogenome.org/gene/47304:DFR88_RS07955 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6R0 ^@ Function|||Similarity|||Subunit ^@ Belongs to the MoaC family.|||Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).|||Homohexamer; trimer of dimers. http://togogenome.org/gene/47304:DFR88_RS05590 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYI0 ^@ Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Belongs to the glutamyl-tRNA reductase family.|||Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).|||During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.|||Homodimer.|||Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization. http://togogenome.org/gene/47304:DFR88_RS04940 ^@ http://purl.uniprot.org/uniprot/A0A4D8RY72 ^@ Similarity ^@ Belongs to the UPF0237 family. http://togogenome.org/gene/47304:DFR88_RS02785 ^@ http://purl.uniprot.org/uniprot/A0A4D8S8S3 ^@ Activity Regulation|||Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the MRE11/RAD32 family.|||Binds 2 manganese ions per subunit.|||Homodimer. Forms a heterotetramer composed of two Mre11 subunits and two Rad50 subunits.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Nuclease activity is regulated by Rad50.|||Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity. http://togogenome.org/gene/47304:DFR88_RS10340 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYJ6 ^@ Cofactor|||Function|||Subunit ^@ Binds 2 [4Fe-4S] clusters. In this family the first cluster has a non-standard and varying [4Fe-4S] binding motif CX(2)CX(2)CX(4-5)CP.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.|||Heterodimer composed of an alpha and a beta subunit.|||Heterodimer of the IorA and IorB subunits. http://togogenome.org/gene/47304:DFR88_RS11880 ^@ http://purl.uniprot.org/uniprot/A0A4D8SI96 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/47304:DFR88_RS06595 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3R0 ^@ Function|||Similarity ^@ Belongs to the cytidine and deoxycytidylate deaminase family.|||This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. http://togogenome.org/gene/47304:DFR88_RS04410 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSD7 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS01860 ^@ http://purl.uniprot.org/uniprot/A0A4D8SIG8 ^@ Similarity|||Subunit ^@ Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family.|||Heterodimer of a large and a small subunit. http://togogenome.org/gene/47304:DFR88_RS07150 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZE4 ^@ Caution|||Function|||Similarity ^@ Belongs to the UbiX/PAD1 family.|||Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS06310 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2R3 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the RNase PH family. Rrp41 subfamily.|||Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails.|||Component of the archaeal exosome complex. Forms a hexameric ring-like arrangement composed of 3 Rrp41-Rrp42 heterodimers. The hexameric ring associates with a trimer of Rrp4 and/or Csl4 subunits.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS03495 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXG8 ^@ Similarity ^@ Belongs to the alpha-IPM synthase/homocitrate synthase family. http://togogenome.org/gene/47304:DFR88_RS10920 ^@ http://purl.uniprot.org/uniprot/A0A4D8S432 ^@ Similarity ^@ Belongs to the SfsA family. http://togogenome.org/gene/47304:DFR88_RS05425 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS78 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the TmcA family.|||Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||nucleolus http://togogenome.org/gene/47304:DFR88_RS03545 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXI0 ^@ Function|||Similarity ^@ Belongs to the GHMP kinase family. PoK subfamily.|||Phosphorylates (R)-pantoate to form (R)-4-phosphopantoate in the CoA biosynthesis pathway. http://togogenome.org/gene/47304:DFR88_RS06150 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3D8 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL18 family.|||Part of the 50S ribosomal subunit. Contacts the 5S and 23S rRNAs.|||This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. http://togogenome.org/gene/47304:DFR88_RS10140 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5A7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL1 family.|||Binds directly to 23S rRNA. Probably involved in E site tRNA release.|||Part of the 50S ribosomal subunit.|||Probably involved in E site tRNA release (By similarity). Binds directly to 23S rRNA.|||Protein L1 is also a translational repressor protein, it controls the translation of its operon by binding to its mRNA. http://togogenome.org/gene/47304:DFR88_RS02720 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1D8 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the DtdA deacylase family.|||Binds 2 Zn(2+) ions per subunit.|||D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.|||Monomer. http://togogenome.org/gene/47304:DFR88_RS00805 ^@ http://purl.uniprot.org/uniprot/A0A4D8RPZ7 ^@ Function|||Similarity|||Subunit ^@ Belongs to the CRISPR-associated endoribonuclease Cas2 protein family.|||CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.|||Homodimer, forms a heterotetramer with a Cas1 homodimer. http://togogenome.org/gene/47304:DFR88_RS05580 ^@ http://purl.uniprot.org/uniprot/A0A4D8S582 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS06220 ^@ http://purl.uniprot.org/uniprot/A0A4D8S919 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL22 family.|||Part of the 50S ribosomal subunit.|||The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.|||This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. http://togogenome.org/gene/47304:DFR88_RS06590 ^@ http://purl.uniprot.org/uniprot/A0A4D8SEY2 ^@ Activity Regulation|||Cofactor|||Function|||Similarity ^@ Allosterically activated by GTP.|||Belongs to the UPRTase family.|||Binds 1 Mg(2+) ion per subunit. The magnesium is bound as Mg-PRPP.|||Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate. http://togogenome.org/gene/47304:DFR88_RS08490 ^@ http://purl.uniprot.org/uniprot/A0A4D8SG08 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the HisA/HisF family.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS03535 ^@ http://purl.uniprot.org/uniprot/A0A4D8S466 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the PanB family.|||Binds 1 Mg(2+) ion per subunit.|||Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.|||Cytoplasm|||Homodecamer; pentamer of dimers. http://togogenome.org/gene/47304:DFR88_RS08680 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTS2 ^@ Similarity ^@ Belongs to the DNA polymerase type-B family. http://togogenome.org/gene/47304:DFR88_RS10150 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUG6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the SPT5 family.|||Belongs to the archaeal Spt5 family.|||Heterodimer composed of Spt4 and Spt5. Interacts with RNA polymerase (RNAP).|||Stimulates transcription elongation. http://togogenome.org/gene/47304:DFR88_RS03115 ^@ http://purl.uniprot.org/uniprot/A0A4D8SIL1 ^@ Similarity ^@ Belongs to the gamma-glutamylcyclotransferase family. http://togogenome.org/gene/47304:DFR88_RS10785 ^@ http://purl.uniprot.org/uniprot/A0A4D8SJ82 ^@ Similarity ^@ Belongs to the NADH dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS00620 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTS8 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the binding-protein-dependent transport system permease family.|||Cell membrane http://togogenome.org/gene/47304:DFR88_RS07035 ^@ http://purl.uniprot.org/uniprot/A0A4D8S619 ^@ Similarity ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EIF2G subfamily. http://togogenome.org/gene/47304:DFR88_RS06555 ^@ http://purl.uniprot.org/uniprot/A0A4D8RSU7 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the RNA polymerase beta chain family.|||Cytoplasm|||DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. http://togogenome.org/gene/47304:DFR88_RS03250 ^@ http://purl.uniprot.org/uniprot/A0A4D8SCV1 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the GHMP kinase family. Homoserine kinase subfamily.|||Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate.|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS09585 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUV2 ^@ Similarity ^@ Belongs to the CutA family. http://togogenome.org/gene/47304:DFR88_RS09690 ^@ http://purl.uniprot.org/uniprot/A0A4D8S563 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.|||Belongs to the asparaginase 1 family. GatD subfamily.|||Heterodimer of GatD and GatE. http://togogenome.org/gene/47304:DFR88_RS09205 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4Y2 ^@ Similarity ^@ Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS06215 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWJ6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uS3 family.|||Binds the lower part of the 30S subunit head.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS02790 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRM8 ^@ Similarity ^@ Belongs to the HerA family. http://togogenome.org/gene/47304:DFR88_RS07965 ^@ http://purl.uniprot.org/uniprot/A0A4D8S6G4 ^@ Function|||Similarity ^@ Belongs to the CDC6/cdc18 family.|||Involved in regulation of DNA replication. http://togogenome.org/gene/47304:DFR88_RS07050 ^@ http://purl.uniprot.org/uniprot/A0A4D8SF91 ^@ Function|||Similarity|||Subunit ^@ Belongs to the archaeal Spt4 family.|||Heterodimer composed of Spt4 and Spt5.|||Stimulates transcription elongation. http://togogenome.org/gene/47304:DFR88_RS07495 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZR4 ^@ Similarity ^@ Belongs to the isopentenyl phosphate kinase family. http://togogenome.org/gene/47304:DFR88_RS10080 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUF4 ^@ Similarity ^@ Belongs to the thiolase-like superfamily. UPF0219 family. http://togogenome.org/gene/47304:DFR88_RS02890 ^@ http://purl.uniprot.org/uniprot/A0A4D8SIJ8 ^@ Caution|||Cofactor|||Similarity|||Subunit ^@ Belongs to the ferredoxin--NADP reductase type 2 family.|||Binds 1 FAD per subunit.|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08010 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU21 ^@ Function ^@ Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of both single-stranded RNA (ssRNA) and single-stranded DNA (ssDNA). Exhibits a strong preference for ssRNA. http://togogenome.org/gene/47304:DFR88_RS07575 ^@ http://purl.uniprot.org/uniprot/A0A4D8S473 ^@ Caution|||Cofactor|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.|||Binds 2 magnesium ions per tetramer.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Tetramer of two alpha and two beta subunits. http://togogenome.org/gene/47304:DFR88_RS10180 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0I4 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL31 family. http://togogenome.org/gene/47304:DFR88_RS07565 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZM8 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.|||Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.|||Monomer.|||Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). http://togogenome.org/gene/47304:DFR88_RS09235 ^@ http://purl.uniprot.org/uniprot/A0A4D8SGG3 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eL42 family.|||Binds 1 zinc ion per subunit.|||Binds to the 23S rRNA.|||Part of the 50S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS09695 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUX4 ^@ Function|||Similarity|||Subunit ^@ Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.|||Belongs to the GatB/GatE family. GatE subfamily.|||Heterodimer of GatD and GatE. http://togogenome.org/gene/47304:DFR88_RS10490 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3V5 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the GcvH family.|||Binds 1 lipoyl cofactor covalently.|||The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. http://togogenome.org/gene/47304:DFR88_RS09840 ^@ http://purl.uniprot.org/uniprot/A0A4D8S557 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TrpB family.|||Tetramer of two alpha and two beta chains.|||The beta subunit is responsible for the synthesis of L-tryptophan from indole and L-serine. http://togogenome.org/gene/47304:DFR88_RS09335 ^@ http://purl.uniprot.org/uniprot/A0A4D8S760 ^@ Function|||Similarity ^@ Belongs to the 2H phosphoesterase superfamily. ThpR family.|||Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'-phosphomonoester. http://togogenome.org/gene/47304:DFR88_RS09850 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUB2 ^@ Caution|||Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the anthranilate phosphoribosyltransferase family.|||Binds 2 magnesium ions per monomer.|||Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS05575 ^@ http://purl.uniprot.org/uniprot/A0A4D8RW95 ^@ Cofactor|||Function|||Miscellaneous|||Similarity ^@ Belongs to the HMBS family.|||Binds 1 dipyrromethane group covalently.|||Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.|||The porphobilinogen subunits are added to the dipyrromethane group. http://togogenome.org/gene/47304:DFR88_RS05615 ^@ http://purl.uniprot.org/uniprot/A0A4D8S347 ^@ Function|||Similarity ^@ Belongs to the EF-1-beta/EF-1-delta family.|||Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. http://togogenome.org/gene/47304:DFR88_RS03305 ^@ http://purl.uniprot.org/uniprot/A0A4D8S424 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the RNase HII family.|||Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.|||Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding. http://togogenome.org/gene/47304:DFR88_RS07070 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3U4 ^@ Caution|||Domain|||Function|||Miscellaneous|||Similarity|||Subunit ^@ Both the DNA unwinding and positive supercoiling activities require the cooperation of both domains. The cooperative action between the helicase-like and the topoisomerase domains is specific. The helicase-like domain probably does not directly unwind DNA but acts more likely by driving ATP-dependent conformational changes within the whole enzyme, functioning more like a protein motor. The 'latch' region of the N-terminal domain plays a regulatory role in the enzyme, repressing topoisomerase activity in the absence of ATP and therefore preventing the enzyme from acting as an ATP-independent relaxing enzyme; it also helps to coordinate nucleotide hydrolysis by the ATPase domain with the supercoiling activity of the topoisomerase domain.|||In the C-terminal section; belongs to the prokaryotic type I/III topoisomerase family.|||In the N-terminal section; belongs to the DEAD box helicase family. DDVD subfamily.|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication.|||Monomer.|||This enzyme is the only unique feature of hyperthermophilic bacteria/archaea discovered so far. It appears to be essential for adaptation to life at high temperatures. http://togogenome.org/gene/47304:DFR88_RS08500 ^@ http://purl.uniprot.org/uniprot/A0A4D8S300 ^@ Similarity ^@ Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. http://togogenome.org/gene/47304:DFR88_RS09970 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYD5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the GcvP family. N-terminal subunit subfamily.|||The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits. http://togogenome.org/gene/47304:DFR88_RS11210 ^@ http://purl.uniprot.org/uniprot/A0A4D8RVN9 ^@ Similarity ^@ Belongs to the zinc-containing alcohol dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS07260 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX59 ^@ Similarity ^@ Belongs to the small heat shock protein (HSP20) family. http://togogenome.org/gene/47304:DFR88_RS07805 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4A9 ^@ Similarity ^@ Belongs to the PGI/PMI family. http://togogenome.org/gene/47304:DFR88_RS04090 ^@ http://purl.uniprot.org/uniprot/A0A4D8S242 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS05765 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3A9 ^@ Cofactor|||Function ^@ Binds 1 [3Fe-4S] cluster.|||Binds 1 [4Fe-4S] cluster.|||Binds 1 zinc ion.|||Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. http://togogenome.org/gene/47304:DFR88_RS07950 ^@ http://purl.uniprot.org/uniprot/A0A4D8RU12 ^@ Function|||Similarity|||Subunit ^@ Belongs to the activator 1 small subunits family. RfcL subfamily.|||Heteromultimer composed of small subunits (RfcS) and large subunits (RfcL).|||Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA. http://togogenome.org/gene/47304:DFR88_RS01345 ^@ http://purl.uniprot.org/uniprot/A0A4D8SBU7 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS07535 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTV0 ^@ Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 2 subfamily.|||Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).|||Cytoplasm http://togogenome.org/gene/47304:DFR88_RS03640 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS08 ^@ Similarity ^@ Belongs to the RuvB family. http://togogenome.org/gene/47304:DFR88_RS06230 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYU6 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL2 family.|||One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.|||Part of the 50S ribosomal subunit. Forms a bridge to the 30S subunit in the 70S ribosome. http://togogenome.org/gene/47304:DFR88_RS06345 ^@ http://purl.uniprot.org/uniprot/A0A4D8SES4 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL15 family. http://togogenome.org/gene/47304:DFR88_RS04630 ^@ http://purl.uniprot.org/uniprot/A0A4D8RRS7 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS04155 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS94 ^@ Similarity ^@ Belongs to the arginase family. Agmatinase subfamily. http://togogenome.org/gene/47304:DFR88_RS11075 ^@ http://purl.uniprot.org/uniprot/A0A4D8S737 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.|||Binds 1 Mn(2+) ion per subunit.|||Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS10195 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5B4 ^@ Function|||Similarity|||Subunit ^@ Belongs to the eukaryotic ribosomal protein eS19 family.|||May be involved in maturation of the 30S ribosomal subunit.|||Part of the 30S ribosomal subunit. http://togogenome.org/gene/47304:DFR88_RS08845 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTU9 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS06370 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTB3 ^@ Similarity ^@ Belongs to the eukaryotic/archaeal PrmC-related family. http://togogenome.org/gene/47304:DFR88_RS00875 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTX6 ^@ Similarity|||Subcellular Location Annotation ^@ Belongs to the purine-cytosine permease (2.A.39) family.|||Membrane http://togogenome.org/gene/47304:DFR88_RS05260 ^@ http://purl.uniprot.org/uniprot/A0A4D8RS46 ^@ Function|||Similarity ^@ Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.|||Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. http://togogenome.org/gene/47304:DFR88_RS10765 ^@ http://purl.uniprot.org/uniprot/A0A4D8S400 ^@ Similarity ^@ In the C-terminal section; belongs to the transposase 35 family.|||In the N-terminal section; belongs to the transposase 2 family. http://togogenome.org/gene/47304:DFR88_RS05335 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYE8 ^@ Similarity ^@ Belongs to the thioesterase PaaI family. http://togogenome.org/gene/47304:DFR88_RS08125 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTI3 ^@ Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the DtxR/MntR family.|||Cytoplasm|||Homodimer. http://togogenome.org/gene/47304:DFR88_RS11280 ^@ http://purl.uniprot.org/uniprot/A0A4D8S888 ^@ Similarity ^@ Belongs to the pyruvate kinase family. http://togogenome.org/gene/47304:DFR88_RS08860 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXW0 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.|||Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).|||Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS10310 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5D6 ^@ Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the GHMP kinase family. Mevalonate kinase subfamily.|||Catalyzes the phosphorylation of (R)-mevalonate (MVA) to (R)-mevalonate 5-phosphate (MVAP). Functions in the mevalonate (MVA) pathway leading to isopentenyl diphosphate (IPP), a key precursor for the biosynthesis of isoprenoid compounds such as archaeal membrane lipids.|||Cytoplasm|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS00980 ^@ http://purl.uniprot.org/uniprot/A0A4D8S8P3 ^@ Similarity ^@ Belongs to the class-I fumarase family. http://togogenome.org/gene/47304:DFR88_RS07140 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX31 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eS24 family. http://togogenome.org/gene/47304:DFR88_RS05585 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYJ2 ^@ Similarity|||Subunit ^@ Belongs to the ALAD family.|||Homooctamer. http://togogenome.org/gene/47304:DFR88_RS06160 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWI9 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL32 family. http://togogenome.org/gene/47304:DFR88_RS07130 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTP3 ^@ Caution|||Cofactor|||Function|||Similarity|||Subcellular Location Annotation ^@ Belongs to the KAE1 / TsaD family.|||Binds 1 Fe(2+) ion per subunit.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. http://togogenome.org/gene/47304:DFR88_RS07460 ^@ http://purl.uniprot.org/uniprot/A0A4D8S415 ^@ Similarity ^@ Belongs to the eukaryotic ribosomal protein eL18 family. http://togogenome.org/gene/47304:DFR88_RS06715 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1U6 ^@ Similarity ^@ Belongs to the UPF0215 family. http://togogenome.org/gene/47304:DFR88_RS09870 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7F6 ^@ Similarity ^@ Belongs to the TrpC family. http://togogenome.org/gene/47304:DFR88_RS08745 ^@ http://purl.uniprot.org/uniprot/A0A4D8S4N6 ^@ Similarity ^@ Belongs to the complex I subunit 3 family. http://togogenome.org/gene/47304:DFR88_RS07475 ^@ http://purl.uniprot.org/uniprot/A0A4D8S687 ^@ Cofactor|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the archaeal Rpo10/eukaryotic RPB10 RNA polymerase subunit family.|||Binds 1 zinc ion.|||Cytoplasm|||DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.|||Part of the RNA polymerase complex. http://togogenome.org/gene/47304:DFR88_RS01360 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYV1 ^@ Function|||Similarity|||Subunit ^@ Belongs to the TPP enzyme family.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS02010 ^@ http://purl.uniprot.org/uniprot/A0A4D8S1U3 ^@ Function|||Similarity ^@ Belongs to the HypA/HybF family.|||Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. http://togogenome.org/gene/47304:DFR88_RS08385 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2Y4 ^@ Caution|||Function|||Similarity|||Subunit ^@ Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.|||Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).|||Homodimer.|||Lacks conserved residue(s) required for the propagation of feature annotation. http://togogenome.org/gene/47304:DFR88_RS08840 ^@ http://purl.uniprot.org/uniprot/A0A4D8S352 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS04015 ^@ http://purl.uniprot.org/uniprot/A0A4D8SD98 ^@ Subcellular Location Annotation ^@ Membrane http://togogenome.org/gene/47304:DFR88_RS06885 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTJ9 ^@ Activity Regulation|||Caution|||Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the peptidase T1B family.|||Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.|||Cytoplasm|||Lacks conserved residue(s) required for the propagation of feature annotation.|||The 20S proteasome core is composed of 14 alpha and 14 beta subunits that assemble into four stacked heptameric rings, resulting in a barrel-shaped structure. The two inner rings, each composed of seven catalytic beta subunits, are sandwiched by two outer rings, each composed of seven alpha subunits. The catalytic chamber with the active sites is on the inside of the barrel. Has a gated structure, the ends of the cylinder being occluded by the N-termini of the alpha-subunits. Is capped at one or both ends by the proteasome regulatory ATPase, PAN.|||The formation of the proteasomal ATPase PAN-20S proteasome complex, via the docking of the C-termini of PAN into the intersubunit pockets in the alpha-rings, triggers opening of the gate for substrate entry. Interconversion between the open-gate and close-gate conformations leads to a dynamic regulation of the 20S proteasome proteolysis activity. http://togogenome.org/gene/47304:DFR88_RS08815 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZX2 ^@ Similarity ^@ Belongs to the glutamate synthase family. http://togogenome.org/gene/47304:DFR88_RS06570 ^@ http://purl.uniprot.org/uniprot/A0A4D8RWR7 ^@ Function|||Similarity ^@ Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.|||Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. http://togogenome.org/gene/47304:DFR88_RS00515 ^@ http://purl.uniprot.org/uniprot/A0A4D8RTQ4 ^@ Function|||Subunit ^@ Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS09980 ^@ http://purl.uniprot.org/uniprot/A0A4D8S0F9 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the GcvH family.|||Binds 1 lipoyl cofactor covalently.|||The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.|||The glycine cleavage system is composed of four proteins: P, T, L and H. http://togogenome.org/gene/47304:DFR88_RS08640 ^@ http://purl.uniprot.org/uniprot/A0A4D8RUD3 ^@ Similarity ^@ Belongs to the V-ATPase F subunit family. http://togogenome.org/gene/47304:DFR88_RS00800 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYI8 ^@ Cofactor|||Function|||Similarity ^@ Belongs to the CRISPR-associated exonuclease Cas4 family.|||CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).|||Mg(2+) or Mn(2+) required for ssDNA cleavage activity. http://togogenome.org/gene/47304:DFR88_RS08885 ^@ http://purl.uniprot.org/uniprot/A0A4D8SG94 ^@ Function|||Similarity|||Subunit ^@ Belongs to the type-I 3-dehydroquinase family.|||Homodimer.|||Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis-dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. http://togogenome.org/gene/47304:DFR88_RS08015 ^@ http://purl.uniprot.org/uniprot/A0A4D8RXG9 ^@ Similarity ^@ Belongs to the thymidylate kinase family. http://togogenome.org/gene/47304:DFR88_RS06455 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5S5 ^@ Similarity ^@ Belongs to the HerA family. http://togogenome.org/gene/47304:DFR88_RS06235 ^@ http://purl.uniprot.org/uniprot/A0A4D8RYU5 ^@ Function|||Similarity|||Subunit ^@ Belongs to the universal ribosomal protein uL23 family.|||Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome.|||Part of the 50S ribosomal subunit. Contacts protein L29. http://togogenome.org/gene/47304:DFR88_RS06330 ^@ http://purl.uniprot.org/uniprot/A0A4D8S5Q1 ^@ Function|||Similarity|||Subcellular Location Annotation|||Subunit ^@ Belongs to the eukaryotic/archaeal RNase P protein component 2 family.|||Consists of a catalytic RNA component and at least 4-5 protein subunits.|||Cytoplasm|||Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. http://togogenome.org/gene/47304:DFR88_RS03050 ^@ http://purl.uniprot.org/uniprot/A0A4D8RV17 ^@ Function|||Similarity ^@ Belongs to the MsrA Met sulfoxide reductase family.|||Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. http://togogenome.org/gene/47304:DFR88_RS09845 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3K4 ^@ Function ^@ The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. http://togogenome.org/gene/47304:DFR88_RS05265 ^@ http://purl.uniprot.org/uniprot/A0A4D8S2X4 ^@ Similarity ^@ Belongs to the PrpD family. http://togogenome.org/gene/47304:DFR88_RS08565 ^@ http://purl.uniprot.org/uniprot/A0A4D8S310 ^@ Cofactor|||Function|||Similarity|||Subunit ^@ Belongs to the TPP enzyme family.|||Binds 1 Mg(2+) ion per subunit.|||Binds 1 thiamine pyrophosphate per subunit.|||Catalyzes the coenzyme A-dependent oxidative decarboxylation of different 2-oxoacids such as 2-oxoglutarate, pyruvate and 2-oxobutyrate to form their CoA derivatives.|||Heterodimer composed of an alpha and a beta subunit. http://togogenome.org/gene/47304:DFR88_RS07470 ^@ http://purl.uniprot.org/uniprot/A0A4D8RX84 ^@ Similarity ^@ Belongs to the universal ribosomal protein uS9 family. http://togogenome.org/gene/47304:DFR88_RS07480 ^@ http://purl.uniprot.org/uniprot/A0A4D8RZC1 ^@ Similarity ^@ Belongs to the universal ribosomal protein uS2 family. http://togogenome.org/gene/47304:DFR88_RS05295 ^@ http://purl.uniprot.org/uniprot/A0A4D8SDZ3 ^@ Similarity ^@ Belongs to the acyl-CoA dehydrogenase family. http://togogenome.org/gene/47304:DFR88_RS06365 ^@ http://purl.uniprot.org/uniprot/A0A4D8S3I0 ^@ Similarity ^@ Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. http://togogenome.org/gene/47304:DFR88_RS10580 ^@ http://purl.uniprot.org/uniprot/A0A4D8S7V1 ^@ Similarity ^@ Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.