An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.
The crystal structure of UehA in complex with ectoine-A comparison with other TRAP-T binding proteins.
Acta Crystallogr Sect F Struct Biol Cryst Commun
Acta Crystallogr. F Struct. Biol. Commun.
Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.
Ecological genomics of marine Roseobacters.
Bacterial SBP56 identified as a Cu-dependent methanethiol oxidase widely distributed in the biosphere.
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis.
The Ruegeria pomeroyi acuI gene has a role in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate.
Novel pathway for assimilation of dimethylsulphoniopropionate widespread in marine bacteria.
Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.
Degradation of the microbial stress protectants and chemical chaperones ectoine and hydroxyectoine by a bacterial hydrolase-deacetylase complex.
L-cysteate sulpho-lyase, a widespread pyridoxal 5'-phosphate-coupled desulphonative enzyme purified from Silicibacter pomeroyi DSS-3(T).
Degradation of polyphosphates by polyphosphate kinases from Ruegeria pomeroyi.
DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria.
Biochemical, kinetic, and spectroscopic characterization of Ruegeria pomeroyi DddW-A mononuclear iron-dependent DMSP lyase.
DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3.
Bacterial taxa that limit sulfur flux from the ocean.
Dimethylsulfoniopropionate-dependent demethylase (DmdA) from Pelagibacter ubique and Silicibacter pomeroyi.
HTHP: a novel class of hexameric, tyrosine-coordinated heme proteins.
Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.
Crystal structure and mutagenic analysis of GDOsp, a gentisate 1,2-dioxygenase from Silicibacter pomeroyi.
Crystal structure of DmdD, a crotonase superfamily enzyme that catalyzes the hydration and hydrolysis of methylthioacryloyl-CoA.
Balancing Specificity and Promiscuity in Enzyme Evolution: Multidimensional Activity Transitions in the Alkaline Phosphatase Superfamily.
Quaternary structure independent folding of voltage-gated ion channel pore domain subunits.
Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks.
Crystal structure of the alpha(6)beta(6) holoenzyme of propionyl-coenzyme A carboxylase.