47858:GA0070610 RS20705
gene id: 47858:GA0070610_RS20705
uniprot id: A0A1C5GDU5
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL28 family.

47858:GA0070610 RS16950
gene id: 47858:GA0070610_RS16950
uniprot id: A0A1C5GBM1
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL20 family.
messages: Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.

47858:GA0070610 RS01360
gene id: 47858:GA0070610_RS01360
uniprot id: A0A1C5G2H4
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL33 family.

47858:GA0070610 RS04520
gene id: 47858:GA0070610_RS04520
uniprot id: A0A1C5G4U3
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL27 family.

47858:GA0070610 RS01535
gene id: 47858:GA0070610_RS01535
uniprot id: A0A1C5G344
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS8 family.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.

47858:GA0070610 RS01585
gene id: 47858:GA0070610_RS01585
uniprot id: A0A1C5G352
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the IF-1 family.
messages: Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.
messages: Cytoplasm
messages: One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.

47858:GA0070610 RS18845
gene id: 47858:GA0070610_RS18845
uniprot id: A0A1C5GCF9
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the SsgA family.
messages: Cell septum

47858:GA0070610 RS01515
gene id: 47858:GA0070610_RS01515
uniprot id: A0A1C5G2K5
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL14 family.
messages: Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.
messages: Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.

47858:GA0070610 RS01500
gene id: 47858:GA0070610_RS01500
uniprot id: A0A1C5G2X2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL16 family.
messages: Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.
messages: Part of the 50S ribosomal subunit.

47858:GA0070610 RS01440
gene id: 47858:GA0070610_RS01440
uniprot id: A0A1C5G2N6
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS12 family.
messages: Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Contacts proteins S8 and S17. May interact with IF1 in the 30S initiation complex.
messages: With S4 and S5 plays an important role in translational accuracy.

47858:GA0070610 RS22695
gene id: 47858:GA0070610_RS22695
uniprot id: A0A1C5GEQ0
names: Cofactor
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.
messages: Belongs to the WhiB family.
messages: Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.
messages: Cytoplasm
messages: The Fe-S cluster can be nitrosylated by nitric oxide (NO).
messages: Upon Fe-S cluster removal intramolecular disulfide bonds are formed.

47858:GA0070610 RS01460
gene id: 47858:GA0070610_RS01460
uniprot id: A0A1C5G2J3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS10 family.
messages: Involved in the binding of tRNA to the ribosomes.
messages: Part of the 30S ribosomal subunit.

47858:GA0070610 RS17075
gene id: 47858:GA0070610_RS17075
uniprot id: A0A1C5GBC3
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase subunit omega family.
messages: Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
messages: The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

47858:GA0070610 RS13940
gene id: 47858:GA0070610_RS13940
uniprot id: A0A1C5GA46
names: Domain
names: Function
names: PTM
names: Similarity
names: Subunit
messages: Belongs to the prokaryotic ubiquitin-like protein family.
messages: Is modified by deamidation of its C-terminal glutamine to glutamate by the deamidase Dop, a prerequisite to the subsequent pupylation process.
messages: Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.
messages: Strongly interacts with the proteasome-associated ATPase ARC through a hydrophobic interface; the interacting region of Pup lies in its C-terminal half. There is one Pup binding site per ARC hexamer ring.
messages: The N-terminal unstructured half of Pup provides a signal required to initiate unfolding and degradation by the proteasome but is not needed for pupylation, while the C-terminal helical half of Pup interacts with ARC to target proteins to the proteasome.

47858:GA0070610 RS28085
gene id: 47858:GA0070610_RS28085
uniprot id: A0A1C5GHW2
names: Function
names: Similarity
names: Subunit
messages: Belongs to the bacterial ribosomal protein bS18 family.
messages: Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.
messages: Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.

47858:GA0070610 RS01485
gene id: 47858:GA0070610_RS01485
uniprot id: A0A1C5G333
names: Function
names: Similarity
messages: Belongs to the universal ribosomal protein uS19 family.
messages: Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.

47858:GA0070610 RS20665
gene id: 47858:GA0070610_RS20665
uniprot id: A0A1C5GDL2
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL32 family.

47858:GA0070610 RS01555
gene id: 47858:GA0070610_RS01555
uniprot id: A0A1C5G3E4
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uL30 family.
messages: Part of the 50S ribosomal subunit.

47858:GA0070610 RS01610
gene id: 47858:GA0070610_RS01610
uniprot id: A0A1C5G2M6
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase alpha chain family.
messages: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
messages: Homodimer. The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
messages: The N-terminal domain is essential for RNAP assembly and basal transcription, whereas the C-terminal domain is involved in interaction with transcriptional regulators and with upstream promoter elements.

47858:GA0070610 RS05505
gene id: 47858:GA0070610_RS05505
uniprot id: A0A1C5G4Z9
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.
messages: 4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by acpS.
messages: Belongs to the acyl carrier protein (ACP) family.
messages: Carrier of the growing fatty acid chain in fatty acid biosynthesis.
messages: Cytoplasm

47858:GA0070610 RS01600
gene id: 47858:GA0070610_RS01600
uniprot id: A0A1C5G2Y8
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS11 family.
messages: Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
messages: Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.

47858:GA0070610 RS02830
gene id: 47858:GA0070610_RS02830
uniprot id: A0A1C5G5R1
names: Cofactor
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
messages: Acts as a transcriptional regulator. Probably redox-responsive. The apo- but not holo-form probably binds DNA.
messages: Belongs to the WhiB family.
messages: Binds 1 [4Fe-4S] cluster per subunit. Following nitrosylation of the [4Fe-4S] cluster binds 1 [4Fe-8(NO)] cluster per subunit.
messages: Cytoplasm
messages: The Fe-S cluster can be nitrosylated by nitric oxide (NO).
messages: Upon Fe-S cluster removal intramolecular disulfide bonds are formed.

47858:GA0070610 RS13725
gene id: 47858:GA0070610_RS13725
uniprot id: A0A1C5GBP4
names: Caution
names: Function
names: Similarity
names: Subunit
messages: Belongs to the RNA polymerase-binding protein RbpA family.
messages: Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
messages: Forms a complex with the RNAP catalytic core and with free principal sigma factors.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.

47858:GA0070610 RS17635
gene id: 47858:GA0070610_RS17635
uniprot id: A0A1C5GC51
names: Subcellular Location Annotation
messages: Cytoplasm

47858:GA0070610 RS16955
gene id: 47858:GA0070610_RS16955
uniprot id: A0A1C5GBJ8
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL35 family.

47858:GA0070610 RS02465
gene id: 47858:GA0070610_RS02465
uniprot id: A0A1C5G3X0
names: Cofactor
names: Function
messages: Binds 1 [3Fe-4S] cluster.
messages: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

47858:GA0070610 RS01590
gene id: 47858:GA0070610_RS01590
uniprot id: A0A1C5G2R2
names: Similarity
messages: Belongs to the bacterial ribosomal protein bL36 family.

47858:GA0070610 RS28075
gene id: 47858:GA0070610_RS28075
uniprot id: A0A1C5GHS6
names: Function
names: Similarity
messages: Belongs to the bacterial ribosomal protein bS6 family.
messages: Binds together with S18 to 16S ribosomal RNA.

47858:GA0070610 RS20160
gene id: 47858:GA0070610_RS20160
uniprot id: A0A1C5GDJ7
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS15 family.
messages: Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
messages: One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
messages: Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.

47858:GA0070610 RS01505
gene id: 47858:GA0070610_RS01505
uniprot id: A0A1C5G3D6
names: Similarity
messages: Belongs to the universal ribosomal protein uL29 family.

47858:GA0070610 RS01550
gene id: 47858:GA0070610_RS01550
uniprot id: A0A1C5G2Y2
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS5 family.
messages: Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body.
messages: Part of the 30S ribosomal subunit. Contacts proteins S4 and S8.
messages: The N-terminal domain interacts with the head of the 30S subunit; the C-terminal domain interacts with the body and contacts protein S4. The interaction surface between S4 and S5 is involved in control of translational fidelity.
messages: With S4 and S12 plays an important role in translational accuracy.

47858:GA0070610 RS02535
gene id: 47858:GA0070610_RS02535
uniprot id: A0A1C5G3G1
names: Subcellular Location Annotation
messages: Cytoplasm