1582439:NPIRD3C RS03015
gene id: 1582439:NPIRD3C_RS03015
uniprot id: A0A0C5BXY5
names: Function
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Belongs to the eukaryotic ribosomal protein eL8 family.
messages: Cytoplasm
messages: Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
messages: Part of the 50S ribosomal subunit. Probably part of the RNase P complex.

1582439:NPIRD3C RS03165
gene id: 1582439:NPIRD3C_RS03165
uniprot id: A0A0C5BUI6
names: Function
names: PTM
names: Similarity
names: Subcellular Location Annotation
names: Subunit
messages: Acetylated. Deacetylation by the SIR2-homolog deacetylase may regulate its activity.
messages: Belongs to the histone-like Alba family.
messages: Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes.
messages: Chromosome
messages: Cytoplasm
messages: Homotetramer.

1582439:NPIRD3C RS01405
gene id: 1582439:NPIRD3C_RS01405
uniprot id: A0A0C5BTJ6
names: Function
names: Similarity
messages: Belongs to the TFIIB family.
messages: Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).

1582439:NPIRD3C RS03290
gene id: 1582439:NPIRD3C_RS03290
uniprot id: A0A0C5BUE3
names: Similarity
messages: Belongs to the complex I 20 kDa subunit family.

1582439:NPIRD3C RS09980
gene id: 1582439:NPIRD3C_RS09980
uniprot id: A0A0C5BU64
names: Similarity
names: Subcellular Location Annotation
messages: Belongs to the archaeal histone HMF family.
messages: Chromosome
messages: Cytoplasm

1582439:NPIRD3C RS10355
gene id: 1582439:NPIRD3C_RS10355
uniprot id: A0A0C5BYH0
names: Function
names: Similarity
messages: Belongs to the TBP family.
messages: General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.

1582439:NPIRD3C RS03020
gene id: 1582439:NPIRD3C_RS03020
uniprot id: A0A0C5BU76
names: Similarity
messages: Belongs to the eukaryotic ribosomal protein eS28 family.

1582439:NPIRD3C RS02990
gene id: 1582439:NPIRD3C_RS02990
uniprot id: A0A0C5BU71
names: Similarity
messages: Belongs to the snRNP Sm proteins family.

1582439:NPIRD3C RS02180
gene id: 1582439:NPIRD3C_RS02180
uniprot id: A0A0C5BPM7
names: Domain
names: Function
names: Similarity
names: Subunit
messages: Belongs to the TFE family.
messages: Monomer. Interaction with RNA polymerase subunits RpoF and RpoE is necessary for Tfe stimulatory transcription activity. Able to interact with Tbp and RNA polymerase in the absence of DNA promoter. Interacts both with the preinitiation and elongation complexes.
messages: The winged helix domain is involved in binding to DNA in the preinitiation complex.
messages: Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to translocate with the RNA polymerase following initiation and acts by binding to the non template strand of the transcription bubble in elongation complexes.

1582439:NPIRD3C RS07870
gene id: 1582439:NPIRD3C_RS07870
uniprot id: A0A0C5C0I2
names: Caution
names: Function
names: Similarity
messages: Belongs to the TFIIB family.
messages: Lacks conserved residue(s) required for the propagation of feature annotation.
messages: Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).

1582439:NPIRD3C RS06870
gene id: 1582439:NPIRD3C_RS06870
uniprot id: A0A0C5CBS5
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.
messages: Binds 1 zinc ion per subunit.
messages: Binds 16S rRNA, required for the assembly of 30S particles.
messages: Part of the 30S ribosomal subunit.

1582439:NPIRD3C RS08200
gene id: 1582439:NPIRD3C_RS08200
uniprot id: A0A0C5C0R1
names: Subcellular Location Annotation
messages: Membrane

1582439:NPIRD3C RS09215
gene id: 1582439:NPIRD3C_RS09215
uniprot id: A0A0C5CD61
names: Similarity
messages: Belongs to the universal ribosomal protein uS9 family.

1582439:NPIRD3C RS05490
gene id: 1582439:NPIRD3C_RS05490
uniprot id: A0A0C5BZB0
names: Function
names: Similarity
names: Subunit
messages: Belongs to the universal ribosomal protein uS10 family.
messages: Involved in the binding of tRNA to the ribosomes.
messages: Part of the 30S ribosomal subunit.

1582439:NPIRD3C RS02325
gene id: 1582439:NPIRD3C_RS02325
uniprot id: A0A0C5BXK7
names: Cofactor
names: Function
names: Similarity
names: Subunit
messages: Belongs to the eukaryotic ribosomal protein eL42 family.
messages: Binds 1 zinc ion per subunit.
messages: Binds to the 23S rRNA.
messages: Part of the 50S ribosomal subunit.