Leisingera methylohalidivorans DSM 14336 plasmid unnamed, complete sequence.
Leisingera methylohalidivorans DSM 14336
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
Submitted (30-SEP-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006774.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 404182\nSource DNA and Organism available from Hans-Peter Klenk\n(hpk@dsmz.de)\nSource DNA available from Hans-Peter Klenk (hpk@dsmz.de)\nOrganism available from Hans-Peter Klenk (hpk@dsmz.de)\nContacts: Hans-Peter Klenk (hpk@dsmz.de)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Leisingera methylohalidivorans MB2, DSM\n 14336\nlat_lon :: 38.90 -77.03\ncountry :: USA\nref_biomaterial :: ATCC BAA-92, DSM 14336, LMG 23656\nisol_growth_condt :: 12054249\nassembly :: ALLPATHS v. R37654\nfinishing_strategy :: Level 2: High-Quality Draft\nenvironment :: Aquatic; Sea water\nsequencing_meth :: WGS\nGOLD Stamp ID :: Gi10858\nCurrent Finishing Status :: Level 6: Finished\nType Strain :: Yes\nFunding Program :: DOE-CSP 2010\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Tide pool, USA.\nSource of Isolate :: Seawater collected from a tide pool\nTemperature Range :: Mesophile\nTemperature Optimum :: 20C\nSalinity :: Halophile\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nCurrent Finishing Status :: Finished\nAssembly Method :: ALLPATHS v. R37654\nGenome Coverage :: Unknown\nSequencing Technology :: 454-GS-FLX-Titanium; Illumina HiSeq\n 2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 02:35:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,555\nCDSs (total) :: 4,474\nGenes (coding) :: 4,288\nCDSs (with protein) :: 4,288\nGenes (RNA) :: 81\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 186\nCDSs (without protein) :: 186\nPseudo Genes (ambiguous residues) :: 0 of 186\nPseudo Genes (frameshifted) :: 84 of 186\nPseudo Genes (incomplete) :: 119 of 186\nPseudo Genes (internal stop) :: 70 of 186\nPseudo Genes (multiple problems) :: 73 of 186\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Leisingera methylohalidivorans
COORDINATES: similar to AA sequence:RefSeq:WP_007791945.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
CmpA/NrtA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296405.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296404.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823557.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611302.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011047130.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018898338.1
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: similar to AA sequence:RefSeq:WP_009819874.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004688981.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296397.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296398.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_008558193.1
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_006938502.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_006938501.1
GO:0005215 - transporter activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
efflux RND transporter periplasmic adaptor subunit
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017929850.1
COORDINATES: similar to AA sequence:RefSeq:WP_009812780.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018516653.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759231.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013960618.1
GO:0016151 - nickel cation binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011503894.1
GO:0016151 - nickel cation binding [Evidence IEA]; GO:0009039 - urease activity [Evidence IEA]
GO:0043419 - urea catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011569873.1
GO:0035550 - urease complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011047449.1
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008885750.1
COORDINATES: similar to AA sequence:RefSeq:WP_005615376.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960610.1
COORDINATES: similar to AA sequence:RefSeq:WP_009158995.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016530 - metallochaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960682.1
COORDINATES: similar to AA sequence:RefSeq:WP_008329912.1
COORDINATES: similar to AA sequence:RefSeq:WP_008329911.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558657.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009175352.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: protein motif:HMM:NF014430.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_008550793.1
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: similar to AA sequence:RefSeq:WP_003251175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012722418.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012927.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011537679.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537678.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537677.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011537676.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537674.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011537673.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011537672.1
COORDINATES: similar to AA sequence:RefSeq:WP_011537671.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0019808 - polyamine binding [Evidence IEA]
GO:0015846 - polyamine transport [Evidence IEA]
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011537670.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008560709.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294604.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558329.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_019294606.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294607.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010442667.1
COORDINATES: protein motif:HMM:NF014585.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011047430.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558290.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558301.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558176.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558377.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558203.1
COORDINATES: similar to AA sequence:RefSeq:WP_003522316.1
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014889242.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296951.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit F
COORDINATES: similar to AA sequence:RefSeq:NP_251685.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_008208348.1
NADH:ubiquinone reductase (Na(+)-transporting) subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_019296948.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
Na(+)-translocating NADH-quinone reductase subunit C
COORDINATES: similar to AA sequence:RefSeq:WP_019296947.1
GO:0022904 - respiratory electron transport chain [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_005977016.1
Na(+)-translocating NADH-quinone reductase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_012690561.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296944.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296943.1
COORDINATES: similar to AA sequence:RefSeq:WP_014881768.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296941.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_008558204.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296939.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296938.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296937.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296936.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296935.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331279.1
COORDINATES: similar to AA sequence:RefSeq:WP_008188570.1
COORDINATES: similar to AA sequence:RefSeq:WP_010440520.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019294361.1
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005854399.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294363.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121088.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294365.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558277.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294367.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014881615.1
GO:0050129 - N-formylglutamate deformylase activity [Evidence IEA]
GO:0019557 - histidine catabolic process to glutamate and formate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005980334.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558298.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011538197.1
sn-glycerol-3-phosphate import ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_011046005.1
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter permease UgpE
COORDINATES: similar to AA sequence:RefSeq:WP_011538195.1
sn-glycerol-3-phosphate ABC transporter permease UgpA
COORDINATES: similar to AA sequence:RefSeq:WP_008210136.1
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: similar to AA sequence:RefSeq:WP_008558299.1
COORDINATES: similar to AA sequence:RefSeq:WP_014880427.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967417.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558308.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294373.1
COORDINATES: similar to AA sequence:RefSeq:WP_006414450.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007702055.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294910.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011049359.1
COORDINATES: similar to AA sequence:RefSeq:WP_009831017.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208414.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558170.1
COORDINATES: similar to AA sequence:RefSeq:WP_009814528.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558291.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749706.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011570181.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294919.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294920.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960317.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558218.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536910.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536911.1
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005623284.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_008195767.1
COORDINATES: similar to AA sequence:RefSeq:WP_009469064.1
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297425.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558168.1
COORDINATES: similar to AA sequence:RefSeq:WP_008206590.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297423.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008203759.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558336.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010432311.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558328.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011969997.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0015948 - methanogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296975.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019296976.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208328.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296978.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008558344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558321.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_008558259.1
aspartate/glutamate racemase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019296983.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558331.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558279.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008558300.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296987.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558334.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558252.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558320.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008203825.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297000.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558181.1
GO:0008783 - agmatinase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297002.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF024795.2
COORDINATES: similar to AA sequence:RefSeq:WP_019294596.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558220.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558281.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294599.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558326.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294601.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009808528.1
GO:0007165 - signal transduction [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011150324.1
COORDINATES: similar to AA sequence:RefSeq:WP_009493037.1
COORDINATES: similar to AA sequence:RefSeq:WP_006387005.1
COORDINATES: similar to AA sequence:RefSeq:WP_007119823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008944862.1
COORDINATES: similar to AA sequence:RefSeq:WP_002945018.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011970598.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019460162.1
COORDINATES: similar to AA sequence:RefSeq:WP_006224908.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426737.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298051.1
COORDINATES: similar to AA sequence:RefSeq:WP_008279263.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019298053.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611339.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503434.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020041963.1
COORDINATES: similar to AA sequence:RefSeq:WP_007791928.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005850992.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005979993.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020041968.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]