Leisingera methylohalidivorans DSM 14336 plasmid unnamed2, complete sequence.
Leisingera methylohalidivorans DSM 14336
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Leisingera.
Submitted (30-SEP-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP006775.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 404182\nSource DNA and Organism available from Hans-Peter Klenk\n(hpk@dsmz.de)\nSource DNA available from Hans-Peter Klenk (hpk@dsmz.de)\nOrganism available from Hans-Peter Klenk (hpk@dsmz.de)\nContacts: Hans-Peter Klenk (hpk@dsmz.de)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nAnnotation by JGI-ORNL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Leisingera methylohalidivorans MB2, DSM\n 14336\nlat_lon :: 38.90 -77.03\ncountry :: USA\nref_biomaterial :: ATCC BAA-92, DSM 14336, LMG 23656\nisol_growth_condt :: 12054249\nassembly :: ALLPATHS v. R37654\nfinishing_strategy :: Level 2: High-Quality Draft\nenvironment :: Aquatic; Sea water\nsequencing_meth :: WGS\nGOLD Stamp ID :: Gi10858\nCurrent Finishing Status :: Level 6: Finished\nType Strain :: Yes\nFunding Program :: DOE-CSP 2010\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Tide pool, USA.\nSource of Isolate :: Seawater collected from a tide pool\nTemperature Range :: Mesophile\nTemperature Optimum :: 20C\nSalinity :: Halophile\nGram Staining :: Gram-\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nCurrent Finishing Status :: Finished\nAssembly Method :: ALLPATHS v. R37654\nGenome Coverage :: Unknown\nSequencing Technology :: 454-GS-FLX-Titanium; Illumina HiSeq\n 2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 02:35:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,555\nCDSs (total) :: 4,474\nGenes (coding) :: 4,288\nCDSs (with protein) :: 4,288\nGenes (RNA) :: 81\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 3\nPseudo Genes (total) :: 186\nCDSs (without protein) :: 186\nPseudo Genes (ambiguous residues) :: 0 of 186\nPseudo Genes (frameshifted) :: 84 of 186\nPseudo Genes (incomplete) :: 119 of 186\nPseudo Genes (internal stop) :: 70 of 186\nPseudo Genes (multiple problems) :: 73 of 186\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Leisingera methylohalidivorans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005853111.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611638.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008184171.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
Members of the family are the ATP-binding subunit of ABC transporters for substrates such as betaine, L-proline or other amino acids, choline, carnitine, etc. The substrate specificity is best determined from the substrate-binding subunit, rather than this subunit, as it interacts with the permease subunit and not with substrate directly; Derived by automated computational analysis using gene prediction method: Protein Homology.
betaine/proline/choline family ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014880792.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008184173.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008758740.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008758711.1
GO:0008168 - methyltransferase activity [Evidence IEA]
GO:0015948 - methanogenesis [Evidence IEA]
trimethylamine methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294824.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014881427.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014880785.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_014880784.1
GO:0047689 - aspartate racemase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007199951.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960753.1
putative sulfate exporter family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017265661.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611490.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611555.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009819789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196074.1
COORDINATES: similar to AA sequence:RefSeq:WP_007196075.1
COORDINATES: similar to AA sequence:RefSeq:WP_005860375.1
COORDINATES: protein motif:HMM:TIGR02122.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: protein motif:HMM:NF024854.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019581.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007427964.1
GO:0015103 - inorganic anion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018427226.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006939978.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008555224.1
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF013757.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010443480.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011454500.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611365.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335981.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331391.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF040974.1
COORDINATES: similar to AA sequence:RefSeq:WP_015918245.1
COORDINATES: similar to AA sequence:RefSeq:WP_010443421.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294468.1
COORDINATES: similar to AA sequence:RefSeq:WP_009502643.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558403.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889370.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB
COORDINATES: similar to AA sequence:RefSeq:WP_019294473.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294474.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019294475.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019294476.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019294478.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294479.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294480.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294481.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558409.1
GO:0015633 - ABC-type zinc transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006829 - zinc ion transport [Evidence IEA]
zinc ABC transporter ATP-binding protein ZnuC
COORDINATES: similar to AA sequence:RefSeq:WP_008558390.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558425.1
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558453.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807699.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294487.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294488.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807702.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008558432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018857937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187142.1
COORDINATES: similar to AA sequence:RefSeq:WP_018238875.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011102826.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017928745.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257301.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007117821.1
COORDINATES: similar to AA sequence:RefSeq:WP_005610214.1
COORDINATES: similar to AA sequence:RefSeq:WP_019620241.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014292046.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747254.1
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_011655330.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012640573.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009827366.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_020400040.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_010967849.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010188013.1
COORDINATES: similar to AA sequence:RefSeq:WP_014332409.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817478.1
COORDINATES: similar to AA sequence:RefSeq:WP_017989426.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_006939180.1
COORDINATES: protein motif:HMM:TIGR00654.1
GO:0016853 - isomerase activity [Evidence IEA]
PhzF family phenazine biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_011654624.1
COORDINATES: similar to AA sequence:RefSeq:WP_018430956.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0033225 - ATPase-coupled 2-aminoethylphosphonate transporter activity [Evidence IEA]
GO:0033223 - 2-aminoethylphosphonate transport [Evidence IEA]
putative 2-aminoethylphosphonate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019297882.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033225 - ATPase-coupled 2-aminoethylphosphonate transporter activity [Evidence IEA]
putative 2-aminoethylphosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016856211.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033226 - 2-aminoethylphosphonate binding [Evidence IEA]; GO:0033225 - ATPase-coupled 2-aminoethylphosphonate transporter activity [Evidence IEA]
putative 2-aminoethylphosphonate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF020253.2
glycine cleavage T C-terminal barrel domain-containing protein
COORDINATES: protein motif:HMM:NF013720.2
COORDINATES: similar to AA sequence:RefSeq:WP_005848490.1
COORDINATES: similar to AA sequence:RefSeq:WP_009809799.1
COORDINATES: similar to AA sequence:RefSeq:WP_009157314.1
COORDINATES: similar to AA sequence:RefSeq:WP_009160145.1
GO:0047400 - phosphonoacetate hydrolase activity [Evidence IEA]
GO:0019636 - phosphonoacetate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019298047.1
GO:0047304 - 2-aminoethylphosphonate-pyruvate transaminase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
2-aminoethylphosphonate--pyruvate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_013533042.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911139.1
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF025113.2
COORDINATES: similar to AA sequence:RefSeq:WP_007013910.1
COORDINATES: similar to AA sequence:RefSeq:WP_008435340.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817370.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815135.1
COORDINATES: similar to AA sequence:RefSeq:WP_009817807.1
COORDINATES: similar to AA sequence:RefSeq:WP_015499078.1
COORDINATES: protein motif:HMM:NF012935.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_043766079.1
COORDINATES: similar to AA sequence:RefSeq:WP_020673327.1
COORDINATES: similar to AA sequence:RefSeq:WP_007068491.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017956536.1
COORDINATES: similar to AA sequence:RefSeq:WP_003563912.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611129.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
COORDINATES: similar to AA sequence:RefSeq:WP_012187070.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:NF041278.1
COORDINATES: similar to AA sequence:RefSeq:WP_011453838.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819588.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008835964.1
COORDINATES: similar to AA sequence:RefSeq:WP_019140163.1
COORDINATES: similar to AA sequence:RefSeq:WP_010971443.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611905.1
COORDINATES: similar to AA sequence:RefSeq:WP_008759471.1
COORDINATES: similar to AA sequence:RefSeq:WP_052642793.1
COORDINATES: similar to AA sequence:RefSeq:WP_017275678.1
COORDINATES: similar to AA sequence:RefSeq:WP_011908460.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296416.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558522.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: protein motif:HMM:NF037928.2
COORDINATES: similar to AA sequence:RefSeq:WP_019296418.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558535.1
GO:0005384 - manganese ion transmembrane transporter activity [Evidence IEA]
GO:0030026 - cellular manganese ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558639.1
COORDINATES: similar to AA sequence:RefSeq:WP_014233953.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558641.1
COORDINATES: protein motif:HMM:NF012791.2
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014921639.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008196772.1
COORDINATES: similar to AA sequence:RefSeq:WP_052096176.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025304.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611442.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654976.1
COORDINATES: similar to AA sequence:RefSeq:WP_012179179.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558646.1
COORDINATES: protein motif:HMM:NF037360.2
COORDINATES: similar to AA sequence:RefSeq:WP_010961510.1
COORDINATES: similar to AA sequence:RefSeq:WP_019296395.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008558663.1
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: similar to AA sequence:RefSeq:WP_008558664.1
COORDINATES: protein motif:HMM:NF013832.2
COORDINATES: similar to AA sequence:RefSeq:WP_008558634.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570479.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570480.1
GO:0006096 - glycolytic process [Evidence IEA]
dihydrolipoamide acetyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630329.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_020042968.1
COORDINATES: similar to AA sequence:RefSeq:WP_017775776.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03168.1
1-phosphofructokinase family hexose kinase
COORDINATES: similar to AA sequence:RefSeq:WP_008558681.1
COORDINATES: similar to AA sequence:RefSeq:WP_009157880.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558490.1
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294492.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294493.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: similar to AA sequence:RefSeq:WP_019294494.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019294495.1
GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294496.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294497.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558491.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558433.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558478.1
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008562455.1
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019294513.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294512.1
GO:0015205 - nucleobase transmembrane transporter activity [Evidence IEA]
nucleobase:cation symporter-2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294510.1
COORDINATES: similar to AA sequence:RefSeq:WP_011540015.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209358.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395294.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558477.1
COORDINATES: similar to AA sequence:RefSeq:WP_005640636.1
GO:0004037 - allantoicase activity [Evidence IEA]; GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
bifunctional allantoicase/(S)-ureidoglycine aminohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_008558395.1
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0015689 - molybdate ion transport [Evidence IEA]
molybdenum ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294501.1
GO:0015098 - molybdate ion transmembrane transporter activity [Evidence IEA]
molybdate ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008558470.1
GO:0015412 - ABC-type molybdate transporter activity [Evidence IEA]; GO:0030973 - molybdate ion binding [Evidence IEA]
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294499.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807718.1
CheB methylesterase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558393.1
COORDINATES: protein motif:HMM:NF024857.2
GO:0043856 - anti-sigma factor antagonist activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209329.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297431.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019297432.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558427.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209322.1
COORDINATES: similar to AA sequence:RefSeq:WP_019297436.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558485.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558458.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558456.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209793.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008558420.1
type VI secretion system-associated protein TagF
COORDINATES: similar to AA sequence:RefSeq:WP_008558430.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_008558468.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_008558421.1
type VI secretion system baseplate subunit TssK
COORDINATES: similar to AA sequence:RefSeq:WP_008558452.1
type VI secretion system-associated FHA domain protein TagH
COORDINATES: similar to AA sequence:RefSeq:WP_008558462.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558504.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807592.1
type VI secretion system tip protein TssI/VgrG
COORDINATES: protein motif:HMM:NF017730.2
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010443394.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008558492.1
GO:0005216 - monoatomic ion channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009815957.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558416.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008558464.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_008558439.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_019294622.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_008558475.1
type VI secretion system accessory protein TagJ
COORDINATES: similar to AA sequence:RefSeq:WP_019294620.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_019294619.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558451.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008209764.1
COORDINATES: similar to AA sequence:RefSeq:WP_008558443.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294464.1
GO:0015252 - proton channel activity [Evidence IEA]
MotA/TolQ/ExbB proton channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019294465.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294466.1
COORDINATES: protein motif:HMM:NF025684.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF014713.2
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011646697.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017927537.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_004213238.1
COORDINATES: similar to AA sequence:RefSeq:WP_011646695.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007426736.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012442736.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009159537.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014285022.1
COORDINATES: protein motif:HMM:NF008501.0
Fe(3+) dicitrate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018077817.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_035026280.1