Flavobacterium jumunjinense strain HME7102 plasmid unnamed2.
Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.
Draft Genome Sequence of a Flavobacterium jumunjinense sp. nov. Isolated from a Lagoon in Korea
Submitted (20-JAN-2022) Interdisciplinary Program in Bioinfomatics, Seoul National University, 1, Gwanak-ro, Gwanak-gu, Seoul 08826, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP091287.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2021\nAssembly Method :: Flye v. 2.8.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 70.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/11/2022 20:15:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,274\nCDSs (total) :: 4,179\nGenes (coding) :: 4,149\nCDSs (with protein) :: 4,149\nGenes (RNA) :: 95\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 3\nPseudo Genes (total) :: 30\nCDSs (without protein) :: 30\nPseudo Genes (ambiguous residues) :: 0 of 30\nPseudo Genes (frameshifted) :: 7 of 30\nPseudo Genes (incomplete) :: 23 of 30\nPseudo Genes (internal stop) :: 3 of 30\nPseudo Genes (multiple problems) :: 3 of 30\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##
type strain of Flavobacterium jumunjinense
COORDINATES: protein motif:HMM:NF012485.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:TIGR03696.1
COORDINATES: similar to AA sequence:RefSeq:WP_012022705.1
COORDINATES: similar to AA sequence:RefSeq:WP_012022707.1