Bacteroides uniformis CL03T12C37 plasmid pBuniCL03T12-1, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering
Submitted (25-JAN-2021) Department of Medicine/Division of Infectious Diseases, Brigham & Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP072256.1.\nSequencing by the Institute for Genome Sciences, Genomics Resource\nCenter, School of Medicine, University of Maryland, 801 W.\nBaltimore Street, Baltimore, MD 21201, USA. Gene calling method:\nProdigal version 2.6.3. Annotated using a custom modification of\nProkka version 1.14.6.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-OCT-2020\nAssembly Method :: FALCON-Unzip v. 1.2.0\nAssembly Name :: BuniCL03T12C37_pbv2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 334x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 03:54:56\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,086\nCDSs (total) :: 4,008\nGenes (coding) :: 3,948\nCDSs (with protein) :: 3,948\nGenes (RNA) :: 78\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 2\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 16 of 60\nPseudo Genes (incomplete) :: 41 of 60\nPseudo Genes (internal stop) :: 18 of 60\nPseudo Genes (multiple problems) :: 12 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004295359.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004295357.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007660158.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011264142.1
COORDINATES: similar to AA sequence:RefSeq:WP_007557648.1
COORDINATES: similar to AA sequence:RefSeq:WP_008671636.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008675888.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004295351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007559169.1
COORDINATES: similar to AA sequence:RefSeq:WP_007559167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295346.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005647355.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008671630.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647353.1
COORDINATES: similar to AA sequence:RefSeq:WP_008671628.1
COORDINATES: similar to AA sequence:RefSeq:WP_008675898.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295339.1
COORDINATES: similar to AA sequence:RefSeq:WP_008671625.1
topoisomerase C-terminal repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005647345.1
COORDINATES: similar to AA sequence:RefSeq:WP_011264151.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295336.1
COORDINATES: similar to AA sequence:RefSeq:WP_007559152.1
COORDINATES: similar to AA sequence:RefSeq:WP_011264154.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647334.1
COORDINATES: similar to AA sequence:RefSeq:WP_007752779.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005647332.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647331.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647329.1
COORDINATES: similar to AA sequence:RefSeq:WP_008656891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008675920.1
COORDINATES: similar to AA sequence:RefSeq:WP_007559134.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647321.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647318.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765216.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765218.1
COORDINATES: similar to AA sequence:RefSeq:WP_008671657.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295375.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295374.1
COORDINATES: similar to AA sequence:RefSeq:WP_008675930.1
COORDINATES: similar to AA sequence:RefSeq:WP_007856468.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765224.1
COORDINATES: similar to AA sequence:RefSeq:WP_017141468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004295368.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765225.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004295365.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647287.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647285.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647280.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647278.1
COORDINATES: similar to AA sequence:RefSeq:WP_005647275.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765229.1
COORDINATES: similar to AA sequence:RefSeq:WP_008765230.1