Bacteroides caccae CL03T12C61 plasmid pBcacCL03T12-1, complete sequence.
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.
Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering
Submitted (25-JAN-2021) Department of Medicine/Division of Infectious Diseases, Brigham & Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP072259.1.\nSequencing by the Institute for Genome Sciences, Genomics Resource\nCenter, School of Medicine, University of Maryland, 801 W.\nBaltimore Street, Baltimore, MD 21201, USA. Gene calling method:\nProdigal version 2.6.3. Annotated using a custom modification of\nProkka version 1.14.6.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-OCT-2020\nAssembly Method :: FALCON-Unzip v. 1.2.0\nAssembly Name :: BcacCL03T12C61_pbv2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 164x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 03:42:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,595\nCDSs (total) :: 4,505\nGenes (coding) :: 4,391\nCDSs (with protein) :: 4,391\nGenes (RNA) :: 90\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 3\nPseudo Genes (total) :: 114\nCDSs (without protein) :: 114\nPseudo Genes (ambiguous residues) :: 0 of 114\nPseudo Genes (frameshifted) :: 36 of 114\nPseudo Genes (incomplete) :: 73 of 114\nPseudo Genes (internal stop) :: 33 of 114\nPseudo Genes (multiple problems) :: 24 of 114\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005683039.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005648588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008781630.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683042.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008675765.1
COORDINATES: similar to AA sequence:RefSeq:WP_004327437.1
COORDINATES: similar to AA sequence:RefSeq:WP_005683045.1
COORDINATES: similar to AA sequence:RefSeq:WP_005783253.1