Ochotona princeps isolate UAM:Mamm:113957 chromosome 1B, OchPri4.0, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona.
REFSEQ INFORMATION: The reference sequence is identical to\nCM025747.1.\nAssembly name: OchPri4.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of British\nColumbia Okanagan on 2020/09/21. The original whole-genome shotgun\nproject has the accession JACJUE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of British Columbia\n Okanagan\nAssembly Method :: Dovetail HiRise v. 2017\nAssembly Name :: OchPri4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: GCA_000292845.1\nGenome Coverage :: 23.68x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Ochotona princeps Annotation Release\n 102\nAnnotation Version :: 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
USA: Beaverhead-Deerlodge National Forest, Montana
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 20 Proteins
phosphatidylinositol-4-phosphate 5-kinase type 1 beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 18 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
phosphatidylinositol 4-phosphate 5-kinase type-1 beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
family with sequence similarity 189 member A2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
amyloid beta precursor protein binding family A member 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins
amyloid-beta A4 precursor protein-binding family A member 1
protein prenyltransferase alpha subunit repeat containing 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
protein prenyltransferase alpha subunit repeat-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
structural maintenance of chromosomes protein 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 6 Proteins
transient receptor potential cation channel subfamily M member 3, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 13 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X21
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 5 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 9 Proteins, and 19% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 17 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 11 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3 isoform X22
transient receptor potential cation channel subfamily M member 3 isoform X21
transient receptor potential cation channel subfamily M member 3, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 11 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 11 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 8 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 6 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 8 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X20
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 7 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X19
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 6 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X15
transient receptor potential cation channel subfamily M member 3, transcript variant X17
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 12 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 10 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X13
transient receptor potential cation channel subfamily M member 3, transcript variant X18
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 5 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 7 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 8 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3, transcript variant X2
transient receptor potential cation channel subfamily M member 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 9 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
transient receptor potential cation channel subfamily M member 3 isoform X16
transient receptor potential cation channel subfamily M member 3 isoform X12
transient receptor potential cation channel subfamily M member 3 isoform X7
transient receptor potential cation channel subfamily M member 3 isoform X11
transient receptor potential cation channel subfamily M member 3 isoform X6
transient receptor potential cation channel subfamily M member 3 isoform X20
transient receptor potential cation channel subfamily M member 3 isoform X19
transient receptor potential cation channel subfamily M member 3 isoform X15
transient receptor potential cation channel subfamily M member 3 isoform X17
transient receptor potential cation channel subfamily M member 3 isoform X14
transient receptor potential cation channel subfamily M member 3 isoform X9
transient receptor potential cation channel subfamily M member 3 isoform X13
transient receptor potential cation channel subfamily M member 3 isoform X18
transient receptor potential cation channel subfamily M member 3 isoform X8
transient receptor potential cation channel subfamily M member 3 isoform X4
transient receptor potential cation channel subfamily M member 3 isoform X10
transient receptor potential cation channel subfamily M member 3 isoform X5
transient receptor potential cation channel subfamily M member 3 isoform X3
transient receptor potential cation channel subfamily M member 3 isoform X2
transient receptor potential cation channel subfamily M member 3 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
cell migration inducing hyaluronidase 2, transcript variant X2
cell migration inducing hyaluronidase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
abhydrolase domain containing 17B, depalmitoylase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
alpha/beta hydrolase domain-containing protein 17B
chromosome 1B C9orf85 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
chromosome 1B C9orf85 homolog, transcript variant X1
uncharacterized protein C9orf85 homolog isoform X1
chromosome 1B C9orf85 homolog, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized protein C9orf85 homolog isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 mRNAs, 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
aldehyde dehydrogenase 1 family member A1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
RAR related orphan receptor B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 6 Proteins
RAR related orphan receptor B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 10 Proteins
transient receptor potential cation channel subfamily M member 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
transformer-2 protein homolog beta-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
transformer-2 protein homolog beta-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 82% coverage of the annotated genomic feature by RNAseq alignments
transformer-2 protein homolog beta-like isoform X1
transformer-2 protein homolog beta-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
proprotein convertase subtilisin/kexin type 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 14 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
proprotein convertase subtilisin/kexin type 5, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
proprotein convertase subtilisin/kexin type 5 isoform X1
proprotein convertase subtilisin/kexin type 5 isoform X2
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting 13 homolog A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting 13 homolog A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting 13 homolog A, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 40% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting-associated protein 13A isoform X1
vacuolar protein sorting-associated protein 13A isoform X2
vacuolar protein sorting-associated protein 13A isoform X3
vacuolar protein sorting 13 homolog A, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 30% coverage of the annotated genomic feature by RNAseq alignments
vacuolar protein sorting-associated protein 13A isoform X4
vacuolar protein sorting 13 homolog A, transcript variant X5
vacuolar protein sorting-associated protein 13A isoform X5
guanine nucleotide-binding protein subunit alpha-14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 31 Proteins
guanine nucleotide-binding protein G(q) subunit alpha
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 mRNAs, 29 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF01225
phosphoserine aminotransferase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 7 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
phosphoserine aminotransferase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 1 Protein, and 80% coverage of the annotated genomic feature by RNAseq alignments
phosphoserine aminotransferase isoform X1
phosphoserine aminotransferase isoform X2
TLE family member 4, transcriptional corepressor, transcript variant X19
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 12 Proteins, and 49% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 16 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 20 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 8 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 7 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X20
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 6 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X23
TLE family member 4, transcriptional corepressor, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 7 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X12
TLE family member 4, transcriptional corepressor, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 11 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 17 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 16 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X18
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 14 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 14 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 13 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 12 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 12 Proteins, and 56% coverage of the annotated genomic feature by RNAseq alignments
transducin-like enhancer protein 4 isoform X13
transducin-like enhancer protein 4 isoform X6
transducin-like enhancer protein 4 isoform X9
transducin-like enhancer protein 4 isoform X18
transducin-like enhancer protein 4 isoform X7
transducin-like enhancer protein 4 isoform X1
transducin-like enhancer protein 4 isoform X10
transducin-like enhancer protein 4 isoform X5
transducin-like enhancer protein 4 isoform X2
transducin-like enhancer protein 4 isoform X19
transducin-like enhancer protein 4 isoform X22
transducin-like enhancer protein 4 isoform X15
transducin-like enhancer protein 4 isoform X16
transducin-like enhancer protein 4 isoform X20
transducin-like enhancer protein 4 isoform X23
transducin-like enhancer protein 4 isoform X11
transducin-like enhancer protein 4 isoform X12
TLE family member 4, transcriptional corepressor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 13 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X17
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 7 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X21
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 6 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 4, transcriptional corepressor, transcript variant X14
TLE family member 4, transcriptional corepressor, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 7 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
transducin-like enhancer protein 4 isoform X3
transducin-like enhancer protein 4 isoform X4
transducin-like enhancer protein 4 isoform X17
transducin-like enhancer protein 4 isoform X21
transducin-like enhancer protein 4 isoform X14
transducin-like enhancer protein 4 isoform X8
TLE family member 1, transcriptional corepressor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 14 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 22% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 26% coverage of the annotated genomic feature by RNAseq alignments
TLE family member 1, transcriptional corepressor, transcript variant X7
TLE family member 1, transcriptional corepressor, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
transducin-like enhancer protein 1 isoform X10
transducin-like enhancer protein 1 isoform X9
transducin-like enhancer protein 1 isoform X3
transducin-like enhancer protein 1 isoform X5
transducin-like enhancer protein 1 isoform X2
transducin-like enhancer protein 1 isoform X8
transducin-like enhancer protein 1 isoform X6
transducin-like enhancer protein 1 isoform X7
transducin-like enhancer protein 1 isoform X1
transducin-like enhancer protein 1 isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
ras and EF-hand domain-containing protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
hippocampus abundant transcript-like protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
cathepsin L1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
cathepsin L1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins
cell division cycle 14B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 11 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
cell division cycle 14B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 13 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
dual specificity protein phosphatase CDC14B isoform X1
dual specificity protein phosphatase CDC14B isoform X2
cell division cycle 14B, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
dual specificity protein phosphatase CDC14B isoform X3
cell division cycle 14B, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
dual specificity protein phosphatase CDC14B isoform X4
cell division cycle 14B, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
dual specificity protein phosphatase CDC14B isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins
intracellular hyaluronan-binding protein 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
DNA excision repair protein ERCC-6-like 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 25 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: fructose-1,6-bisphosphatase isozyme 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
glycine dehydrogenase (decarboxylating), mitochondrial
ubiquitin like with PHD and ring finger domains 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 5 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments
RAN binding protein 6, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 8 Proteins, and 34% coverage of the annotated genomic feature by RNAseq alignments
RAN binding protein 6, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 43% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein KIAA2026 homolog
endoplasmic reticulum metallopeptidase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
RIC1 homolog, RAB6A GEF complex partner 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 2 Proteins
RIC1 homolog, RAB6A GEF complex partner 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein
guanine nucleotide exchange factor subunit RIC1 isoform X2
guanine nucleotide exchange factor subunit RIC1 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
plasminogen receptor with a C-terminal lysine
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
RNA terminal phosphate cyclase like 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 7 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
RNA terminal phosphate cyclase like 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
RNA 3'-terminal phosphate cyclase-like protein isoform X1
RNA 3'-terminal phosphate cyclase-like protein isoform X2
adenylate kinase 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
adenylate kinase 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 16 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
adenylate kinase 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 91% coverage of the annotated genomic feature by RNAseq alignments
adenylate kinase 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
GTP:AMP phosphotransferase AK3, mitochondrial isoform X1
GTP:AMP phosphotransferase AK3, mitochondrial isoform X2
GTP:AMP phosphotransferase AK3, mitochondrial isoform X3
GTP:AMP phosphotransferase AK3, mitochondrial isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
spermatogenesis associated 6-like protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 33% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transcription factor RFX3
histone-arginine methyltransferase CARM1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
potassium voltage-gated channel modifier subfamily V member 2
potassium voltage-gated channel subfamily V member 2
very low density lipoprotein receptor, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 15 Proteins, and 51% coverage of the annotated genomic feature by RNAseq alignments
very low density lipoprotein receptor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 7 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
very low density lipoprotein receptor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
very low-density lipoprotein receptor isoform X3
very low-density lipoprotein receptor isoform X2
very low-density lipoprotein receptor isoform X1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
probable global transcription activator SNF2L2 isoform X1
probable global transcription activator SNF2L2 isoform X2
doublesex and mab-3 related transcription factor 2
doublesex- and mab-3-related transcription factor 2
doublesex and mab-3 related transcription factor 3
doublesex- and mab-3-related transcription factor 3
doublesex and mab-3 related transcription factor 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 Proteins
doublesex- and mab-3-related transcription factor 1
KN motif and ankyrin repeat domains 1, transcript variant X2
KN motif and ankyrin repeat domains 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
KN motif and ankyrin repeat domain-containing protein 1 isoform X2
KN motif and ankyrin repeat domain-containing protein 1 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 4% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 10 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments