Ochotona princeps isolate UAM:Mamm:113957 chromosome 22, OchPri4.0, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona.
REFSEQ INFORMATION: The reference sequence is identical to\nCM025742.1.\nAssembly name: OchPri4.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the University of British\nColumbia Okanagan on 2020/09/21. The original whole-genome shotgun\nproject has the accession JACJUE000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: University of British Columbia\n Okanagan\nAssembly Method :: Dovetail HiRise v. 2017\nAssembly Name :: OchPri4.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: GCA_000292845.1\nGenome Coverage :: 23.68x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Ochotona princeps Annotation Release\n 102\nAnnotation Version :: 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
USA: Beaverhead-Deerlodge National Forest, Montana
Derived by automated computational analysis using gene prediction method: Gnomon.
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 13 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 70% coverage of the annotated genomic feature by RNAseq alignments
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 10 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 66% coverage of the annotated genomic feature by RNAseq alignments
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X7
SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 32% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00020
transforming protein RhoA-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transforming protein RhoA-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transforming protein RhoA-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
transforming protein RhoA-like isoform X2
transforming protein RhoA-like isoform X3
transforming protein RhoA-like isoform X1
carboxypeptidase E, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, and 65% coverage of the annotated genomic feature by RNAseq alignments
carboxypeptidase E, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
kelch like family member 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
kelch like family member 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
kelch like family member 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
kelch like family member 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 14 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
membrane associated ring-CH-type finger 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
E3 ubiquitin-protein ligase MARCHF1 isoform X2
membrane associated ring-CH-type finger 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
E3 ubiquitin-protein ligase MARCHF1 isoform X1
translation machinery associated 16 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
translation machinery-associated protein 16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
nuclear assembly factor 1 ribonucleoprotein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
H/ACA ribonucleoprotein complex non-core subunit NAF1
follistatin like 5, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
follistatin like 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
follistatin like 5, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 30% coverage of the annotated genomic feature by RNAseq alignments
follistatin-related protein 5 isoform X1
follistatin-related protein 5 isoform X2
follistatin-related protein 5 isoform X3
Rap guanine nucleotide exchange factor 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 4% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
folliculin interacting protein 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
folliculin-interacting protein 2 isoform X3
folliculin interacting protein 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
folliculin interacting protein 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 4% coverage of the annotated genomic feature by RNAseq alignments
folliculin-interacting protein 2 isoform X2
folliculin-interacting protein 2 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 13 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
electron transfer flavoprotein dehydrogenase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 3 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
electron transfer flavoprotein dehydrogenase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 9 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial isoform X2
electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial isoform X1
renal cancer differentiation gene 1 protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transmembrane protein 144
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
glutamate ionotropic receptor AMPA type subunit 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
glutamate ionotropic receptor AMPA type subunit 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
glutamate ionotropic receptor AMPA type subunit 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 21 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
glutamate ionotropic receptor AMPA type subunit 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 22 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
glutamate ionotropic receptor AMPA type subunit 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
glycine receptor beta, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 30 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
glycine receptor beta, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 22% coverage of the annotated genomic feature by RNAseq alignments
glycine receptor subunit beta isoform X2
glycine receptor subunit beta isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 5 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
tryptophan 2,3-dioxygenase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
tryptophan 2,3-dioxygenase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
tryptophan 2,3-dioxygenase, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
acid sensing ion channel subunit family member 5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
guanylate cyclase 1 soluble subunit beta 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
guanylate cyclase soluble subunit beta-1
guanylate cyclase 1 soluble subunit alpha 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
guanylate cyclase 1 soluble subunit alpha 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
guanylate cyclase soluble subunit alpha-1 isoform X2
guanylate cyclase soluble subunit alpha-1 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
neuropeptide Y receptor Y2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 11 Proteins
neuropeptide Y receptor Y2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
neuropeptide Y receptor type 2 isoform X2
neuropeptide Y receptor type 2 isoform X1
RNA binding motif protein 46, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 10 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
probable RNA-binding protein 46 isoform X1
RNA binding motif protein 46, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 8 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
probable RNA-binding protein 46 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 36% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
pleckstrin and Sec7 domain containing 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
pleckstrin and Sec7 domain containing 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pleckstrin and Sec7 domain containing 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
pleckstrin and Sec7 domain containing 3, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
PH and SEC7 domain-containing protein 3 isoform X1
PH and SEC7 domain-containing protein 3 isoform X2
PH and SEC7 domain-containing protein 3 isoform X3
PH and SEC7 domain-containing protein 3 isoform X4
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 Proteins
integrator complex subunit 10, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
integrator complex subunit 10, transcript variant X7
integrator complex subunit 10, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
integrator complex subunit 10, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
integrator complex subunit 10, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 7% coverage of the annotated genomic feature by RNAseq alignments
integrator complex subunit 10, transcript variant X2
integrator complex subunit 10, transcript variant X5
integrator complex subunit 10 isoform X3
integrator complex subunit 10 isoform X7
integrator complex subunit 10 isoform X1
integrator complex subunit 10 isoform X6
integrator complex subunit 10 isoform X4
integrator complex subunit 10 isoform X2
integrator complex subunit 10 isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 mRNAs, 8 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
V-type proton ATPase subunit B, brain isoform
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
leucine zipper putative tumor suppressor 1
GDNF family receptor alpha 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 Proteins
GDNF family receptor alpha 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 19 Proteins
GDNF family receptor alpha 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 9 Proteins, and 9% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 Proteins
dematin actin binding protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 Proteins
dematin actin binding protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 5 Proteins
dematin actin binding protein, transcript variant X2
dematin actin binding protein, transcript variant X4
dematin actin binding protein, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins
dematin actin binding protein, transcript variant X5
dematin actin binding protein, transcript variant X7
family with sequence similarity 160 member B2, transcript variant X1
family with sequence similarity 160 member B2, transcript variant X2
HR lysine demethylase and nuclear receptor corepressor
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 4 Proteins
surfactant protein C, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
surfactant protein C, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
pulmonary surfactant-associated protein C
bone morphogenetic protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 Proteins
bone morphogenetic protein 1, transcript variant X1
bone morphogenetic protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins
phytanoyl-CoA 2-hydroxylase interacting protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 10 Proteins
phytanoyl-CoA hydroxylase-interacting protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 7 Proteins
DNA-directed RNA polymerase III subunit RPC4
piwi like RNA-mediated gene silencing 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 Proteins
piwi like RNA-mediated gene silencing 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins
protein phosphatase 3 catalytic subunit gamma
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: PDZ and LIM domain protein 2
cell cycle and apoptosis regulator 2, transcript variant X1
cell cycle and apoptosis regulator 2, transcript variant X2
cell cycle and apoptosis regulator protein 2 isoform X1
cell cycle and apoptosis regulator protein 2 isoform X2
bridging integrator 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 7 Proteins
bridging integrator 3, transcript variant X2
bridging integrator 3, transcript variant X3
early growth response 3, transcript variant X1
early growth response 3, transcript variant X2
early growth response 3, transcript variant X3
early growth response protein 3 isoform X1
early growth response protein 3 isoform X2
early growth response protein 3 isoform X3
phosphatidylethanolamine binding protein 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
phosphatidylethanolamine-binding protein 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
rho-related BTB domain-containing protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 6 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
R3H and coiled-coil domain-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 11 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 16 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 15 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 14 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 15 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
SRSF protein kinase 2, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 mRNAs, 3 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
inactive histone-lysine N-methyltransferase 2E
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 8 Proteins
LHFPL tetraspan subfamily member 3 protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
solute carrier family 26 member 5, transcript variant X1
solute carrier family 26 member 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 Proteins
solute carrier family 26 member 5, transcript variant X4
solute carrier family 26 member 5, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 85% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
DnaJ heat shock protein family (Hsp40) member C2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 5 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
DnaJ heat shock protein family (Hsp40) member C2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 2 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
dnaJ homolog subfamily C member 2 isoform X1
dnaJ homolog subfamily C member 2 isoform X2
peptidase, mitochondrial processing subunit beta
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 84% coverage of the annotated genomic feature by RNAseq alignments
mitochondrial-processing peptidase subunit beta
N-acyl phosphatidylethanolamine phospholipase D
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
leucine-rich repeat-containing protein 17
family with sequence similarity 185 member A
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
coiled-coil domain-containing protein 146
gamma-secretase activating protein, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
gamma-secretase activating protein, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 53% coverage of the annotated genomic feature by RNAseq alignments
gamma-secretase activating protein, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
gamma-secretase activating protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
gamma-secretase activating protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
gamma-secretase activating protein, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 66% coverage of the annotated genomic feature by RNAseq alignments
gamma-secretase-activating protein isoform X4
gamma-secretase-activating protein isoform X3
gamma-secretase-activating protein isoform X2
gamma-secretase-activating protein isoform X1
gamma-secretase-activating protein isoform X6
gamma-secretase-activating protein isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
protein tyrosine phosphatase non-receptor type 12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 10 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
tyrosine-protein phosphatase non-receptor type 12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
putative homeodomain transcription factor 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
membrane associated guanylate kinase, WW and PDZ domain containing 2
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2
10 kDa heat shock protein, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 43 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
guanine nucleotide-binding protein G(i) subunit alpha-1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 21 Proteins
guanine nucleotide-binding protein G(t) subunit alpha-3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
hepatocyte growth factor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
hepatocyte growth factor, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 8 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
hepatocyte growth factor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
calcium voltage-gated channel auxiliary subunit alpha2delta 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-1
small nucleolar RNA SNORA16B/SNORA16A family
COORDINATES: nucleotide motif:Rfam:12.0:RF00190
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments