Rhodococcus koreensis strain R85 plasmid unnamed3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus.
Complete Genome Sequences of Two Rhodococcus sp. Strains with Large and Linear Chromosomes, Isolated from Apple Rhizosphere
Microbiol Resour Announc 10 (24), e0015921 (2021)
Submitted (11-FEB-2021) Comparative Microbiome Analysis, Helmholtz Center Munich, Ingolstaedter Landstr. 1, Neuherberg 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP070612.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2020\nAssembly Method :: Microbial Assembly v. May-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 202x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:34:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 10,075\nCDSs (total) :: 10,008\nGenes (coding) :: 9,623\nCDSs (with protein) :: 9,623\nGenes (RNA) :: 67\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 385\nCDSs (without protein) :: 385\nPseudo Genes (ambiguous residues) :: 0 of 385\nPseudo Genes (frameshifted) :: 224 of 385\nPseudo Genes (incomplete) :: 267 of 385\nPseudo Genes (internal stop) :: 41 of 385\nPseudo Genes (multiple problems) :: 137 of 385\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
rhizosphere of apple plantlets grown in replant diseased soil
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012691860.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012691861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691862.1
COORDINATES: protein motif:HMM:NF025669.2
COORDINATES: similar to AA sequence:RefSeq:WP_005253021.1
COORDINATES: protein motif:HMM:NF012974.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012691874.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475920.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691876.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475916.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475917.1
COORDINATES: similar to AA sequence:RefSeq:WP_018894145.1
COORDINATES: similar to AA sequence:RefSeq:WP_018162441.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891042.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891041.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007728052.1
COORDINATES: similar to AA sequence:RefSeq:WP_005562157.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005562166.1
COORDINATES: protein motif:HMM:NF014687.2
COORDINATES: similar to AA sequence:RefSeq:WP_016883316.1
COORDINATES: similar to AA sequence:RefSeq:WP_018332214.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687595.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600421.1
COORDINATES: similar to AA sequence:RefSeq:WP_007297232.1
COORDINATES: similar to AA sequence:RefSeq:WP_016880456.1
COORDINATES: similar to AA sequence:RefSeq:WP_005257720.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011596326.1
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005261597.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009476829.1
COORDINATES: similar to AA sequence:RefSeq:WP_005253425.1
COORDINATES: similar to AA sequence:RefSeq:WP_005237956.1
COORDINATES: similar to AA sequence:RefSeq:WP_012396686.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475933.1
COORDINATES: similar to AA sequence:RefSeq:WP_018255879.1
COORDINATES: similar to AA sequence:RefSeq:WP_018255880.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018803191.1
TnsA-like heteromeric transposase endonuclease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007030338.1
COORDINATES: similar to AA sequence:RefSeq:WP_016885069.1
COORDINATES: protein motif:HMM:NF019149.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011597628.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016696198.1
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_003943638.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: similar to AA sequence:RefSeq:WP_005570041.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005566945.1
COORDINATES: similar to AA sequence:RefSeq:WP_005566943.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019749803.1
COORDINATES: similar to AA sequence:RefSeq:WP_005259840.1
COORDINATES: similar to AA sequence:RefSeq:WP_005259842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691820.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691821.1
COORDINATES: similar to AA sequence:RefSeq:WP_016885079.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_020476891.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475956.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475957.1
COORDINATES: similar to AA sequence:RefSeq:WP_019750054.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012691828.1
COORDINATES: protein motif:HMM:NF013265.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_012836526.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF027584.2
COORDINATES: similar to AA sequence:RefSeq:WP_019749767.1
COORDINATES: similar to AA sequence:RefSeq:WP_006898598.1
GO:0097573 - glutathione oxidoreductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249392.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249393.1
COORDINATES: similar to AA sequence:RefSeq:WP_005562469.1