Rhodococcus koreensis strain R85 plasmid unnamed2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus.
Complete Genome Sequences of Two Rhodococcus sp. Strains with Large and Linear Chromosomes, Isolated from Apple Rhizosphere
Microbiol Resour Announc 10 (24), e0015921 (2021)
Submitted (11-FEB-2021) Comparative Microbiome Analysis, Helmholtz Center Munich, Ingolstaedter Landstr. 1, Neuherberg 85764, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP070611.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: MAY-2020\nAssembly Method :: Microbial Assembly v. May-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 202x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:34:11\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 10,075\nCDSs (total) :: 10,008\nGenes (coding) :: 9,623\nCDSs (with protein) :: 9,623\nGenes (RNA) :: 67\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 385\nCDSs (without protein) :: 385\nPseudo Genes (ambiguous residues) :: 0 of 385\nPseudo Genes (frameshifted) :: 224 of 385\nPseudo Genes (incomplete) :: 267 of 385\nPseudo Genes (internal stop) :: 41 of 385\nPseudo Genes (multiple problems) :: 137 of 385\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
rhizosphere of apple plantlets grown in replant diseased soil
COORDINATES: similar to AA sequence:RefSeq:WP_018738455.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: protein motif:HMM:NF025442.2
COORDINATES: protein motif:HMM:NF024873.2
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006331311.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019972665.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025825.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_016881767.1
COORDINATES: similar to AA sequence:RefSeq:WP_176223647.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005253471.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019746339.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017590167.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245176.1
COORDINATES: protein motif:HMM:NF039405.1
COORDINATES: similar to AA sequence:RefSeq:WP_005565090.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884320.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687076.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687077.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884318.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570653.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687080.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687081.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245115.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012687083.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687085.1
COORDINATES: similar to AA sequence:RefSeq:WP_006935814.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687089.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011599411.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881267.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881268.1
COORDINATES: similar to AA sequence:RefSeq:WP_005564124.1
COORDINATES: similar to AA sequence:RefSeq:WP_005564122.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687100.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881272.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016881274.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600542.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881276.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687109.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881280.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881281.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881283.1
COORDINATES: similar to AA sequence:RefSeq:WP_005574595.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600533.1
COORDINATES: similar to AA sequence:RefSeq:WP_005572342.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245088.1
COORDINATES: similar to AA sequence:RefSeq:WP_005572020.1
COORDINATES: similar to AA sequence:RefSeq:WP_005572340.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881293.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687123.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012687125.1
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009472859.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helicase associated domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_007300296.1
COORDINATES: similar to AA sequence:RefSeq:WP_013424966.1
COORDINATES: similar to AA sequence:RefSeq:WP_013416041.1
COORDINATES: protein motif:HMM:NF002937.0
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006339353.1
COORDINATES: similar to AA sequence:RefSeq:WP_012690494.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015656514.1
COORDINATES: similar to AA sequence:RefSeq:WP_016570452.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_018309896.1
GO:0047443 - 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity [Evidence IEA]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
COORDINATES: protein motif:HMM:NF014899.2
COORDINATES: protein motif:HMM:NF015682.2
COORDINATES: similar to AA sequence:RefSeq:WP_017670619.1
COORDINATES: protein motif:HMM:NF013646.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003927100.1
COORDINATES: similar to AA sequence:RefSeq:WP_016693479.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015997.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_009473570.1
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011599060.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882020.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599299.1
COORDINATES: similar to AA sequence:RefSeq:WP_016882023.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612358.1
COORDINATES: similar to AA sequence:RefSeq:WP_011729589.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611777.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014152136.1
COORDINATES: similar to AA sequence:RefSeq:WP_020516609.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003895521.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_003895523.1
COORDINATES: similar to AA sequence:RefSeq:WP_003895524.1
GO:0008774 - acetaldehyde dehydrogenase (acetylating) activity [Evidence IEA]
acetaldehyde dehydrogenase (acetylating)
COORDINATES: similar to AA sequence:RefSeq:WP_019966191.1
GO:0008701 - 4-hydroxy-2-oxovalerate aldolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003895506.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611377.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012606173.1
COORDINATES: similar to AA sequence:RefSeq:WP_012690798.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012690082.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015069106.1
COORDINATES: similar to AA sequence:RefSeq:WP_003895519.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003934249.1
COORDINATES: similar to AA sequence:RefSeq:WP_005465521.1
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:NF018717.2
COORDINATES: similar to AA sequence:RefSeq:WP_003895522.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299944.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005255872.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600055.1
COORDINATES: similar to AA sequence:RefSeq:WP_005096012.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011600057.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: similar to AA sequence:RefSeq:WP_011600060.1
COORDINATES: similar to AA sequence:RefSeq:WP_005096000.1
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011600062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600063.1
mycofactocin-coupled SDR family oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_005574202.1
COORDINATES: similar to AA sequence:RefSeq:WP_005255888.1
COORDINATES: similar to AA sequence:RefSeq:WP_011600066.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010924694.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008972439.1
COORDINATES: similar to AA sequence:RefSeq:WP_013952644.1
COORDINATES: similar to AA sequence:RefSeq:WP_013393255.1
COORDINATES: similar to AA sequence:RefSeq:WP_010693865.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005261525.1
COORDINATES: protein motif:HMM:NF024591.2
COORDINATES: similar to AA sequence:RefSeq:WP_003971399.1
COORDINATES: similar to AA sequence:RefSeq:WP_003973911.1
COORDINATES: similar to AA sequence:RefSeq:WP_004941103.1
COORDINATES: similar to AA sequence:RefSeq:WP_020548898.1
COORDINATES: similar to AA sequence:RefSeq:WP_009774162.1
COORDINATES: similar to AA sequence:RefSeq:WP_020415778.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018155187.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017831831.1
COORDINATES: similar to AA sequence:RefSeq:WP_003891889.1
COORDINATES: similar to AA sequence:RefSeq:WP_020415784.1
COORDINATES: similar to AA sequence:RefSeq:WP_032491516.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_086557958.1
COORDINATES: similar to AA sequence:RefSeq:WP_006136363.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557967.1
COORDINATES: similar to AA sequence:RefSeq:WP_013802008.1
NADPH-dependent 2,4-dienoyl-CoA reductase
COORDINATES: similar to AA sequence:RefSeq:WP_018570845.1
COORDINATES: similar to AA sequence:RefSeq:WP_018683618.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: protein motif:HMM:NF012656.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003815607.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012711.2
class I adenylate-forming enzyme family protein
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017977991.1
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_018313058.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018270966.1
COORDINATES: protein motif:HMM:NF012335.2
NADPH:quinone oxidoreductase family protein
COORDINATES: protein motif:HMM:NF024850.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014684.2
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF024954.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024751.2
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF024844.2
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011082855.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:NP_215563.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245585.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558018.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887303.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014049869.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_013053976.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007223694.1
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016747468.1
COORDINATES: protein motif:HMM:NF014664.2
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017666825.1
COORDINATES: similar to AA sequence:RefSeq:WP_020494645.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254288.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_003935907.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005245728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439145.1
COORDINATES: similar to AA sequence:RefSeq:WP_011727913.1
COORDINATES: protein motif:HMM:NF015735.2
COORDINATES: similar to AA sequence:RefSeq:WP_014877203.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007237591.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879914.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006554675.1
COORDINATES: similar to AA sequence:RefSeq:WP_019744583.1
NAD(P)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005572639.1
COORDINATES: similar to AA sequence:RefSeq:WP_016883880.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_011599566.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599567.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599568.1
COORDINATES: similar to AA sequence:RefSeq:WP_018534595.1
COORDINATES: similar to AA sequence:RefSeq:WP_010204944.1
COORDINATES: similar to AA sequence:RefSeq:WP_018225908.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599571.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599572.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005265032.1
COORDINATES: similar to AA sequence:RefSeq:WP_005256257.1
COORDINATES: similar to AA sequence:RefSeq:WP_005567705.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599581.1
COORDINATES: similar to AA sequence:RefSeq:WP_012690801.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006932622.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005254602.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264936.1
COORDINATES: similar to AA sequence:RefSeq:WP_012181715.1
COORDINATES: similar to AA sequence:RefSeq:WP_009943936.1
COORDINATES: protein motif:HMM:NF023092.2
COORDINATES: similar to AA sequence:RefSeq:WP_011561409.1
COORDINATES: protein motif:HMM:NF024966.2
COORDINATES: similar to AA sequence:RefSeq:WP_019181114.1
COORDINATES: similar to AA sequence:RefSeq:WP_011604276.1
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: similar to AA sequence:RefSeq:WP_015607278.1
COORDINATES: similar to AA sequence:RefSeq:WP_010837846.1
COORDINATES: similar to AA sequence:RefSeq:WP_017681853.1
COORDINATES: similar to AA sequence:RefSeq:WP_009473144.1
COORDINATES: similar to AA sequence:RefSeq:WP_007682039.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475646.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595551.1
COORDINATES: similar to AA sequence:RefSeq:WP_005250243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012394229.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_016882149.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245238.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599262.1
COORDINATES: similar to AA sequence:RefSeq:WP_005248951.1
COORDINATES: similar to AA sequence:RefSeq:WP_019747249.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296153.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296155.1
COORDINATES: similar to AA sequence:RefSeq:WP_005252730.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296157.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296158.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011599259.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007296160.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296161.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296163.1
COORDINATES: similar to AA sequence:RefSeq:WP_009476146.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015655112.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673017.1
COORDINATES: similar to AA sequence:RefSeq:WP_006935783.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005017514.1
COORDINATES: similar to AA sequence:RefSeq:WP_014358850.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673013.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673012.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673011.1
toluene-4-monooxygenase system B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013673010.1
GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013673009.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673008.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013673007.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673006.1
COORDINATES: similar to AA sequence:RefSeq:WP_013673005.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243735.1
COORDINATES: similar to AA sequence:RefSeq:WP_019744758.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_011599974.1
COORDINATES: similar to AA sequence:RefSeq:WP_003887767.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011599602.1
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF013658.2
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006866373.1
COORDINATES: similar to AA sequence:RefSeq:WP_006948164.1
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_015306002.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF019908.2
COORDINATES: similar to AA sequence:RefSeq:WP_016933738.1
COORDINATES: similar to AA sequence:RefSeq:WP_003920308.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298548.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298549.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007298550.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298602.1
COORDINATES: similar to AA sequence:RefSeq:WP_009480668.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007299280.1
COORDINATES: similar to AA sequence:RefSeq:WP_005574023.1
COORDINATES: similar to AA sequence:RefSeq:WP_011593939.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570311.1
COORDINATES: similar to AA sequence:RefSeq:WP_009472758.1
There are 14 genes on the gvp gene cluster in halophilic archaea. The product of gvpA is a structural component of gas vesicles, which provide buoyancy to cells and promote flotation. It has been reported that the products of gvpAO and gvpFGJKLM represent the minimal set required for gas vesicle formation in halophilic archaea; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011593937.1
COORDINATES: similar to AA sequence:RefSeq:WP_005241540.1
COORDINATES: similar to AA sequence:RefSeq:WP_005571625.1
COORDINATES: similar to AA sequence:RefSeq:WP_011727513.1
COORDINATES: similar to AA sequence:RefSeq:WP_011598739.1
COORDINATES: similar to AA sequence:RefSeq:WP_005241543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011599344.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570320.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881303.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570322.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570326.1
COORDINATES: similar to AA sequence:RefSeq:WP_005241554.1
COORDINATES: similar to AA sequence:RefSeq:WP_005241555.1
COORDINATES: similar to AA sequence:RefSeq:WP_005570331.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_005570332.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686800.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245057.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005256400.1
COORDINATES: similar to AA sequence:RefSeq:WP_003934219.1
COORDINATES: similar to AA sequence:RefSeq:WP_011595918.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_016693663.1
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_011599217.1
COORDINATES: similar to AA sequence:RefSeq:WP_020476774.1
COORDINATES: similar to AA sequence:RefSeq:WP_015889114.1
COORDINATES: similar to AA sequence:RefSeq:WP_008259505.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
Rho termination factor N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: similar to AA sequence:RefSeq:WP_005256661.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005253533.1
COORDINATES: similar to AA sequence:RefSeq:WP_016933979.1
COORDINATES: similar to AA sequence:RefSeq:WP_005245315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012686898.1
COORDINATES: similar to AA sequence:RefSeq:WP_013228333.1
COORDINATES: similar to AA sequence:RefSeq:WP_015993274.1
low affinity iron permease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020110630.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017681345.1
COORDINATES: similar to AA sequence:RefSeq:WP_007529811.1
COORDINATES: similar to AA sequence:RefSeq:WP_010592190.1
COORDINATES: similar to AA sequence:RefSeq:WP_014942037.1
COORDINATES: similar to AA sequence:RefSeq:WP_014381005.1
COORDINATES: similar to AA sequence:RefSeq:WP_007297519.1
COORDINATES: similar to AA sequence:RefSeq:WP_015102446.1
COORDINATES: similar to AA sequence:RefSeq:WP_005244403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012690391.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687407.1
COORDINATES: similar to AA sequence:RefSeq:WP_012691879.1
COORDINATES: similar to AA sequence:RefSeq:WP_005255804.1
COORDINATES: similar to AA sequence:RefSeq:WP_011726108.1
COORDINATES: similar to AA sequence:RefSeq:WP_013228355.1
COORDINATES: similar to AA sequence:RefSeq:WP_007297491.1
COORDINATES: similar to AA sequence:RefSeq:WP_009473993.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006242334.1
COORDINATES: similar to AA sequence:RefSeq:WP_016932918.1
COORDINATES: similar to AA sequence:RefSeq:WP_010473213.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009476421.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005256901.1
COORDINATES: similar to AA sequence:RefSeq:WP_003940939.1
COORDINATES: similar to AA sequence:RefSeq:WP_007298615.1
COORDINATES: protein motif:HMM:NF015799.2
COORDINATES: similar to AA sequence:RefSeq:WP_007296728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296729.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007296730.1
COORDINATES: similar to AA sequence:RefSeq:WP_003878860.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_015748841.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296733.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296735.1
COORDINATES: similar to AA sequence:RefSeq:WP_006539203.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007296737.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767934.1
COORDINATES: similar to AA sequence:RefSeq:WP_009979159.1
COORDINATES: protein motif:HMM:NF017880.2
COORDINATES: similar to AA sequence:RefSeq:WP_003099331.1
COORDINATES: similar to AA sequence:RefSeq:WP_016884232.1
COORDINATES: similar to AA sequence:RefSeq:WP_006944226.1
COORDINATES: similar to AA sequence:RefSeq:NP_214972.1
COORDINATES: similar to AA sequence:RefSeq:WP_005563973.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553322.1
COORDINATES: similar to AA sequence:RefSeq:WP_008718401.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_005256659.1
GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013285379.1
COORDINATES: similar to AA sequence:RefSeq:WP_012687713.1
COORDINATES: similar to AA sequence:RefSeq:WP_016881785.1
COORDINATES: similar to AA sequence:RefSeq:WP_009477449.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746674.1
COORDINATES: similar to AA sequence:RefSeq:WP_005238363.1
COORDINATES: similar to AA sequence:RefSeq:WP_005250050.1
COORDINATES: similar to AA sequence:RefSeq:WP_010593337.1
histone-like nucleoid-structuring protein Lsr2
COORDINATES: similar to AA sequence:RefSeq:WP_007295604.1
COORDINATES: protein motif:HMM:NF021641.2
COORDINATES: similar to AA sequence:RefSeq:WP_012687745.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
3' terminal RNA ribose 2'-O-methyltransferase Hen1
COORDINATES: similar to AA sequence:RefSeq:WP_012687746.1
GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [Evidence IEA]; GO:0051731 - polynucleotide 5'-hydroxyl-kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007295982.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007295981.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264241.1
COORDINATES: similar to AA sequence:RefSeq:WP_007300337.1
COORDINATES: similar to AA sequence:RefSeq:WP_011593806.1
COORDINATES: similar to AA sequence:RefSeq:WP_020100277.1
COORDINATES: similar to AA sequence:RefSeq:WP_020496008.1
COORDINATES: similar to AA sequence:RefSeq:WP_020386056.1
COORDINATES: similar to AA sequence:RefSeq:WP_015890865.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015890868.1
COORDINATES: similar to AA sequence:RefSeq:WP_006332619.1
COORDINATES: similar to AA sequence:RefSeq:WP_015890870.1
GO:0043880 - crotonyl-CoA reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015101377.1
COORDINATES: similar to AA sequence:RefSeq:WP_003934543.1
GO:0004040 - amidase activity [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_005263884.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018102067.1
COORDINATES: similar to AA sequence:RefSeq:WP_018088753.1
COORDINATES: similar to AA sequence:RefSeq:WP_019746630.1
COORDINATES: similar to AA sequence:RefSeq:WP_005560251.1
COORDINATES: similar to AA sequence:RefSeq:WP_005566908.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.