Elephas maximus indicus isolate mEleMax1 chromosome Y, mEleMax1 primary haplotype, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Elephas.
REFSEQ INFORMATION: The reference sequence is identical to\nCM044048.1.\nAssembly name: mEleMax1 primary haplotype\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/07/06. The original whole-genome shotgun project has the\naccession JAMZQU000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 21-MAR-2022\nAssembly Method :: Hifiasm v. 0.16.1; purge_dups v.\n 07.12.21; Bionano solve v. 3.3; Salsa v.\n 2.3\nAssembly Name :: mEleMax1 primary haplotype\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 43.0x\nSequencing Technology :: PacBio Sequel II HiFi; Bionano optical\n mapping; Arima HiC\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_024166365.1-RS_2023_02\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 02/26/2023\n##Genome-Annotation-Data-END##
testis-specific Y-encoded protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
PC-esterase domain-containing protein 1B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
PC-esterase domain-containing protein 1B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
40S ribosomal protein S4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
40S ribosomal protein S4-like, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
40S ribosomal protein S4-like isoform X1
40S ribosomal protein S4-like, transcript variant X2
40S ribosomal protein S4-like isoform X2
heat shock transcription factor, Y-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock transcription factor, Y-linked-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
eukaryotic translation initiation factor 1A, X-chromosomal; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A, X-chromosomal
lysine-specific demethylase 5C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine-specific demethylase 5C-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
lysine-specific demethylase 5C-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
lysine-specific demethylase 5C-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
lysine-specific demethylase 5C-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
lysine-specific demethylase 5C-like isoform X4
lysine-specific demethylase 5C-like isoform X2
lysine-specific demethylase 5C-like isoform X3
lysine-specific demethylase 5C-like isoform X1
uncharacterized LOC126069868; Derived by automated computational analysis using gene prediction method: Gnomon.
BCL-6 corepressor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gamma-taxilin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gamma-taxilin-like, transcript variant X3
gamma-taxilin-like, transcript variant X2
gamma-taxilin-like, transcript variant X1
suppressor of SWI4 1 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
cullin-4B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00026
Derived by automated computational analysis using gene prediction method: cmsearch.
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: PC-esterase domain-containing protein 1B-like
claudin 34; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
TGF-beta-activated kinase 1 and MAP3K7-binding protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
lysine-specific demethylase 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine-specific demethylase 6A-like, transcript variant X4
lysine-specific demethylase 6A-like, transcript variant X2
lysine-specific demethylase 6A-like, transcript variant X8
lysine-specific demethylase 6A-like, transcript variant X3
lysine-specific demethylase 6A-like, transcript variant X7
lysine-specific demethylase 6A-like, transcript variant X1
lysine-specific demethylase 6A-like, transcript variant X12
lysine-specific demethylase 6A-like, transcript variant X10
lysine-specific demethylase 6A-like, transcript variant X9
lysine-specific demethylase 6A-like isoform X4
lysine-specific demethylase 6A-like isoform X2
lysine-specific demethylase 6A-like isoform X3
lysine-specific demethylase 6A-like isoform X6
lysine-specific demethylase 6A-like isoform X1
lysine-specific demethylase 6A-like isoform X10
lysine-specific demethylase 6A-like isoform X8
lysine-specific demethylase 6A-like, transcript variant X6
lysine-specific demethylase 6A-like, transcript variant X11
lysine-specific demethylase 6A-like, transcript variant X5
lysine-specific demethylase 6A-like isoform X5
lysine-specific demethylase 6A-like isoform X9
transcription initiation factor TFIID subunit 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
sorting nexin-6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase DDX3X-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase DDX3X-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
ATP-dependent RNA helicase DDX3X-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
ATP-dependent RNA helicase DDX3X-like, transcript variant X3
ATP-dependent RNA helicase DDX3X-like isoform X2
ATP-dependent RNA helicase DDX3X-like isoform X1
ATP-dependent RNA helicase DDX3X-like isoform X3
probable ubiquitin carboxyl-terminal hydrolase FAF-X; Derived by automated computational analysis using gene prediction method: Gnomon.
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X4
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X1
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X2
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X3
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X5
synapse-associated protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tyrosine-protein phosphatase non-receptor type 12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
CTP synthase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
26S proteasome non-ATPase regulatory subunit 12-like; Derived by automated computational analysis using gene prediction method: Gnomon.
thymosin beta-4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
thymosin beta-4-like, transcript variant X1
thymosin beta-4-like, transcript variant X2
amelogenin, X isoform; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC126069885; Derived by automated computational analysis using gene prediction method: cmsearch.
zinc finger X-chromosomal protein; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger X-chromosomal protein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
zinc finger X-chromosomal protein, transcript variant X2
eukaryotic translation initiation factor 2 subunit 3, Y-linked; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2 subunit 3, Y-linked
membrane-bound transcription factor site-2 protease-like; Derived by automated computational analysis using gene prediction method: Gnomon.
membrane-bound transcription factor site-2 protease-like
carboxypeptidase Z-like; Derived by automated computational analysis using gene prediction method: Gnomon.
glycine receptor subunit alpha-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine protease 52-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, X chromosome-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, X chromosome-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
probable tRNA (uracil-O(2)-)-methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.