Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid pSLT, complete sequence.
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella.
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
The Salmonella typhimurium Genome Sequencing Project
Submitted (12-DEC-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA
Submitted (05-APR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA
This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistry or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. NOTES: Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER (Salzberg, S., Delcher, A., Kasif, A. and White, O. (1998) NAR 26,544-548) GeneMark (Lukashim, A.V. and Borodovsky, M. (1998), NAR 26, 1107-1115.
REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to AE006471.\nOn Dec 12, 2016 this sequence version replaced gi:17233403.\nCOMPLETENESS: full length.
sdiA-regulated gene;putative bacterial regulatory helix-turn-helix proteins, araC family
sdiA-regulated gene; putative outer membrane protein
sdiA-regulated gene; putative thiol-disulfide isomerase or thioredoxin
putative bacterial regulatory proteins, luxR family
plasmid-encoded fimbriae; major fimbrial subunit
putative diguanylate cyclase/phosphodiesterase
Salmonella plasmid virulence: hydrophilic protein
Salmonella plasmid virulence: outer membrane protein
Salmonella plasmid virulence: regulation of spv operon, lysR family
putative phosphoribulokinase / uridine kinase family
putative DNA polymerase III epsilon subunit (3'-5' exonuclease)
mutagenesis by UV and mutagens; related to umuDC operon
conjugative transfer: aggregate stability
conjugative transfer: fimbrial synthesis
conjugative transfer: assembly abd aggregate stability
conjugative transfer: oriT nicking-unwinding
conjugative transfer: fimbrial acetylation