Capra hircus breed San Clemente chromosome 14, ASM170441v1, whole genome shotgun sequence.
type: Entry
definition: Capra hircus breed San Clemente chromosome 14, ASM170441v1, whole genome shotgun sequence.
sequence version: NC_030821.1
sequence date: 2016-09-08
sequence: sequence
division: CON
label: NC_030821.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA340281
dblink: SAMN03863711
keyword: WGS
keyword: RefSeq
source: Capra hircus (goat)
organism: Capra hircus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra.
reference: 1
references: 9023104
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM004575.1.\nAssembly name: ASM170441v1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the USDA ARS on 2016/08/24. The\noriginal whole-genome shotgun project has the accession\nLWLT00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: USDA ARS\nAssembly Date :: MAR-2016\nAssembly Method :: Celera Assembler v. 8.2; BioNano Genomics\n Irys v. APRIL-2015; Lachesis Hi-C v.\n JUNE-2015\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 50.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Capra hircus Annotation Release 102\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.1\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 94672733
topology: linear
so has quality: SO_0000987
location: 1..94672733
location: region:1-94672733:1
RO_0002162: 9925

NC_030821
type: RefSeq
SIO_000068: refseq

PRJNA340281
type: BioProject
SIO_000068: bioproject

SAMN03863711
type: BioSample
SIO_000068: biosample

1
title: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
author: Lowe, T.M.
author: Eddy, S.R.
journal: Nucleic Acids Res.
volume: 25
issue: 5
pages: 955-964
year: 1997
pubmed: 9023104
comments: This is the methods paper for tRNAscan-SE.

9023104
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94672733:1
position: 94672733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-94672733:1:source
so part of: sequence
organism: Capra hircus
mol type: genomic DNA
chromosome: 14
sex: male
tissue type: blood
dev stage: adult
breed: San Clemente

9925
type: Taxonomy
SIO_000068: taxonomy

SNTB1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: SNTB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 118759..361920
location: region:118759-361920:1
so has part: feature:118759-361920:1:exon
subclass of: SO_0000010

102178375
type: Gene
SIO_000068: ncbigene

position:118759:1
position: 118759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:361920:1
position: 361920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118759-361920:1:exon

SNTB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SNTB1
product: syntrophin beta 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 42 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_018058133.1
SIO_010081: SNTB1
subclass of: SO_0000673
so part of: SNTB1
location: join(118759..119476,221677..221893,273623..273830,330749..330888,349105..349301,355453..355640,358595..361920)
location: region:118759-361920:1
so has part: feature:118759-119476:1:exon
so has part: feature:221677-221893:1:exon
so has part: feature:273623-273830:1:exon
so has part: feature:330749-330888:1:exon
so has part: feature:349105-349301:1:exon
so has part: feature:355453-355640:1:exon
so has part: feature:358595-361920:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:118759-119476:1:exon

position:119476:1
position: 119476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:221677-221893:1:exon

position:221677:1
position: 221677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:221893:1
position: 221893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:273623-273830:1:exon

position:273623:1
position: 273623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:273830:1
position: 273830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:330749-330888:1:exon

position:330749:1
position: 330749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:330888:1
position: 330888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:349105-349301:1:exon

position:349105:1
position: 349105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:349301:1
position: 349301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:355453-355640:1:exon

position:355453:1
position: 355453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:355640:1
position: 355640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:358595-361920:1:exon

position:358595:1
position: 358595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNTB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SNTB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-1-syntrophin
translation: MAVAAGPAGGGGRAPRSGLLEVLVRDRWHKVLVNLGEDALLLSCEDGAANGLGAAAGASSRRGAGPAEAAAGVRTAFTDPPERVPEAVCSQKRGVKVLKQELGGLGISIKGGKENKMPILISKIFKGLAADQTQALYVGDAILSVNGADLRDATHDEAVQALKRAGREVLLEVKYMREATPYVTKGSPVSEIGWETPPPESPRLGASAPDPLASQPPSFHRDRKSIPLRMCFVTRSLALADPESRQLEIHSPDAKHTVVLRAKDSATAQAWFSAIHTTVSDLLTHVIAEAREQLGPMGLAGGREIRHLGWLAEKVPGGSEKRWRPALVVLTEKDLLIYDSMPRRKEAWFSPVHTYPLLATRLVHSGPGKGSPQAGVDLSFATRTGTQQGIETHLFRAEVSRDLSHWTRSIVQGCHDSAELTAEISTACTYRDQECRLTIHYENGFSITTEPQEGAFKTIMQAPYEKLKMSSDDGIRMLYLDFGGKDGELQLDLHACPKPIVFIIHSFLSAKITRLGLVA
SIO_010081: SNTB1
subclass of: SO_0000673
so part of: SNTB1
location: join(118960..119476,221677..221893,273623..273830,330749..330888,349105..349301,355453..355640,358595..358687)
location: region:118960-358687:1
so has part: feature:118960-119476:1:exon
so has part: feature:221677-221893:1:exon
so has part: feature:273623-273830:1:exon
so has part: feature:330749-330888:1:exon
so has part: feature:349105-349301:1:exon
so has part: feature:355453-355640:1:exon
so has part: feature:358595-358687:1:exon

XP_017913622.1
type: Protein
SIO_000068: ncbiprotein

position:118960:1
position: 118960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:358687:1
position: 358687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118960-119476:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:221677-221893:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:273623-273830:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:330749-330888:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:349105-349301:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:355453-355640:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:358595-358687:1:exon

MTBP
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: MTBP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(363892..431866)
location: region:363892-431866:-1
so has part: feature:363892-431866:-1:exon
subclass of: SO_0000010

102178187
type: Gene
SIO_000068: ncbigene

position:363892:-1
position: 363892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431866:-1
position: 431866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:363892-431866:-1:exon

MTBP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MTBP
product: MDM2 binding protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_018058135.1
SIO_010081: MTBP
subclass of: SO_0000673
so part of: MTBP
location: complement(join(363892..365641,366692..366757,371443..371556,373639..373879,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423986,425569..425627,427419..427570,427666..427739,430661..430741,431713..431866))
location: region:363892-431866:-1
so has part: feature:431713-431866:-1:exon
so has part: feature:430661-430741:-1:exon
so has part: feature:427666-427739:-1:exon
so has part: feature:427419-427570:-1:exon
so has part: feature:425569-425627:-1:exon
so has part: feature:423842-423986:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373879:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366692-366757:-1:exon
so has part: feature:363892-365641:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:431713-431866:-1:exon

position:431713:-1
position: 431713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:430661-430741:-1:exon

position:430661:-1
position: 430661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:430741:-1
position: 430741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:427666-427739:-1:exon

position:427666:-1
position: 427666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:427739:-1
position: 427739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:427419-427570:-1:exon

position:427419:-1
position: 427419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:427570:-1
position: 427570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:425569-425627:-1:exon

position:425569:-1
position: 425569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425627:-1
position: 425627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:423842-423986:-1:exon

position:423842:-1
position: 423842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:423986:-1
position: 423986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:422671-422788:-1:exon

position:422671:-1
position: 422671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:422788:-1
position: 422788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:421635-421769:-1:exon

position:421635:-1
position: 421635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:421769:-1
position: 421769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:419976-420070:-1:exon

position:419976:-1
position: 419976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:420070:-1
position: 420070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:419101-419173:-1:exon

position:419101:-1
position: 419101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:419173:-1
position: 419173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:416123-416240:-1:exon

position:416123:-1
position: 416123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:416240:-1
position: 416240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:406041-406214:-1:exon

position:406041:-1
position: 406041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:406214:-1
position: 406214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:404798-404905:-1:exon

position:404798:-1
position: 404798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:404905:-1
position: 404905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:399744-399899:-1:exon

position:399744:-1
position: 399744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:399899:-1
position: 399899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:397184-397301:-1:exon

position:397184:-1
position: 397184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:397301:-1
position: 397301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:390299-390454:-1:exon

position:390299:-1
position: 390299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:390454:-1
position: 390454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:387123-387218:-1:exon

position:387123:-1
position: 387123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:387218:-1
position: 387218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:375530-375796:-1:exon

position:375530:-1
position: 375530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375796:-1
position: 375796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:373639-373879:-1:exon

position:373639:-1
position: 373639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:373879:-1
position: 373879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:371443-371556:-1:exon

position:371443:-1
position: 371443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:371556:-1
position: 371556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:366692-366757:-1:exon

position:366692:-1
position: 366692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366757:-1
position: 366757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:363892-365641:-1:exon

position:365641:-1
position: 365641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MTBP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MTBP
product: MDM2 binding protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_018058134.1
SIO_010081: MTBP
subclass of: SO_0000673
so part of: MTBP
location: complement(join(363892..365641,366692..366757,371443..371556,373639..373882,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423986,425569..425627,427419..427570,427666..427739,430661..430741,431713..431866))
location: region:363892-431866:-1
so has part: feature:431713-431866:-1:exon
so has part: feature:430661-430741:-1:exon
so has part: feature:427666-427739:-1:exon
so has part: feature:427419-427570:-1:exon
so has part: feature:425569-425627:-1:exon
so has part: feature:423842-423986:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373882:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366692-366757:-1:exon
so has part: feature:363892-365641:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:431713-431866:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:430661-430741:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:427666-427739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:427419-427570:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425569-425627:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:423842-423986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:422671-422788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421635-421769:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:419976-420070:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:419101-419173:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:416123-416240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:406041-406214:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:404798-404905:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:399744-399899:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:397184-397301:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:390299-390454:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:387123-387218:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375530-375796:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:373639-373882:-1:exon

position:373882:-1
position: 373882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:371443-371556:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:366692-366757:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:363892-365641:-1:exon

MTBP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MTBP
product: MDM2 binding protein, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_018058136.1
SIO_010081: MTBP
subclass of: SO_0000673
so part of: MTBP
location: complement(join(365388..365641,366692..366757,371443..371556,373639..373882,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423986,425569..425627,430661..430741))
location: region:365388-430741:-1
so has part: feature:430661-430741:-1:exon
so has part: feature:425569-425627:-1:exon
so has part: feature:423842-423986:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373882:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366692-366757:-1:exon
so has part: feature:365388-365641:-1:exon

position:365388:-1
position: 365388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430661-430741:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:425569-425627:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:423842-423986:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422671-422788:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:421635-421769:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:419976-420070:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:419101-419173:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:416123-416240:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:406041-406214:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:404798-404905:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:399744-399899:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:397184-397301:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:390299-390454:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:387123-387218:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:375530-375796:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:373639-373882:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:371443-371556:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:366692-366757:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:365388-365641:-1:exon

MTBP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MTBP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mdm2-binding protein isoform X2
translation: MDRYLLLAVWGEGKAAVAAAGAGRGPEASRVEGPGRPPDLRAANVYHLLKRSISASVSPEDSTFPACSVGGIPGSRKWFFAVQAICGFYQFCSSHWEEIHFGAEKDDIEDVLQTNMEECLSAVECFEEEDSNSRESLSLADLYEESAESLHQLSDKLPAPGRAMIDIILLPSDKDPPKLRDCLPTVGALKHLKEWYSAKVTIAGDHCEINYQKIAEYLSANIVSFEDLRNAIDSKELWRGKIQIWERKFGSEISFPEFCLKGVTRKNFSTSNLKTCFLNKKLIPSKDKDILPKVFHYYGPALEFVQMIRLSDLPSCYMSDVEFELGLTRNSTKQSSRLLVEQISSLCGEAGALFVLPCTIGRILAPPPSQLSSRRWKEYMARKPRTISVPDVEVKGESSSYYLLLRGNGNGKCKATLIHSANQINGSFALSLIHGKLKAATEETRLSSPLDLSSLPRFSKEQLIQRERQLASAQASALKECLQRRKLAQQREVVSVDELKSLLTCTRERFLGHFDALIPKTSLIKTDETSNMLHDSSSLELTSSRLVETNPLEWPERHVLQNLETCEKAKQKMRTGSLPRSSEQLLGHKEGPRDSVTLLDAKELLKFFTSDGLPIGDLQPLQIQKGEKTFVLTPELSPRKLRGLPFEEASVCHYHGIEYCLDDRKALERDGGFLELQSRLIRYETQTTCTRGSSPGPAVLSPLPSPAVSSEPTSVPDGEALQSELRTDVPRVKRRSKDVNCLYPPKRLVRSGSSDSLLSQTSGSARHRHAVPSRKPRAERLLPVPCPSALSREAPGATAKASSGPKAARESETARPAKESRSQKHTRILKEVVAEALKKHRITEAHECFPACSQRLFEISKFYLKDLKTSRGLFEEMKKTANSNVVQVIEWVLEKASKK
SIO_010081: MTBP
subclass of: SO_0000673
so part of: MTBP
location: complement(join(365603..365641,366692..366757,371443..371556,373639..373879,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423986,425569..425627,427419..427570,427666..427739,430661..430741,431713..431827))
location: region:365603-431827:-1
so has part: feature:431713-431827:-1:exon
so has part: feature:430661-430741:-1:exon
so has part: feature:427666-427739:-1:exon
so has part: feature:427419-427570:-1:exon
so has part: feature:425569-425627:-1:exon
so has part: feature:423842-423986:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373879:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366692-366757:-1:exon
so has part: feature:365603-365641:-1:exon

XP_017913624.1
type: Protein
SIO_000068: ncbiprotein

position:365603:-1
position: 365603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431827:-1
position: 431827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431713-431827:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:430661-430741:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:427666-427739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:427419-427570:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425569-425627:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:423842-423986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:422671-422788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421635-421769:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:419976-420070:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:419101-419173:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:416123-416240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:406041-406214:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:404798-404905:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:399744-399899:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:397184-397301:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:390299-390454:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:387123-387218:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375530-375796:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:373639-373879:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:371443-371556:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:366692-366757:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:365603-365641:-1:exon

MTBP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MTBP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mdm2-binding protein isoform X1
translation: MDRYLLLAVWGEGKAAVAAAGAGRGPEASRVEGPGRPPDLRAANVYHLLKRSISASVSPEDSTFPACSVGGIPGSRKWFFAVQAICGFYQFCSSHWEEIHFGAEKDDIEDVLQTNMEECLSAVECFEEEDSNSRESLSLADLYEESAESLHQLSDKLPAPGRAMIDIILLPSDKDPPKLRDCLPTVGALKHLKEWYSAKVTIAGDHCEINYQKIAEYLSANIVSFEDLRNAIDSKELWRGKIQIWERKFGSEISFPEFCLKGVTRKNFSTSNLKTCFLNKKLIPSKDKDILPKVFHYYGPALEFVQMIRLSDLPSCYMSDVEFELGLTRNSTKQSSRLLVEQISSLCGEAGALFVLPCTIGRILAPPPSQLSSRRWKEYMARKPRTISVPDVEVKGESSSYYLLLRGNGNGKCKATLIHSANQINGSFALSLIHGKLKAATEETRLSSPLDLSSLPRFSKEQLIQRERQLASAQASALKECLQRRKLAQQREVVSVDELKSLLTCTRERFLGHFDALIPKTSLIKTDETSNMLHDSSSLELTSSRLVETNPLEWPERHVLQNLETCEKAKQKMRTGSLPRSSEQLLGHKEGPRDSVTLLDAKELLKFFTSDGLPIGDLQPLQIQKGEKTFVLTPELSPRKLRGLPFEEASVCHYHGIEYCLDDRKALERDGGFLELQSRLIRYETQTTCTRGSSPGPAVLSPLPSPAVSSEPTSVPDGEALQSELRTDVPRVKRRSKDVNCLYPPKSRLVRSGSSDSLLSQTSGSARHRHAVPSRKPRAERLLPVPCPSALSREAPGATAKASSGPKAARESETARPAKESRSQKHTRILKEVVAEALKKHRITEAHECFPACSQRLFEISKFYLKDLKTSRGLFEEMKKTANSNVVQVIEWVLEKASKK
SIO_010081: MTBP
subclass of: SO_0000673
so part of: MTBP
location: complement(join(365603..365641,366692..366757,371443..371556,373639..373882,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423986,425569..425627,427419..427570,427666..427739,430661..430741,431713..431827))
location: region:365603-431827:-1
so has part: feature:431713-431827:-1:exon
so has part: feature:430661-430741:-1:exon
so has part: feature:427666-427739:-1:exon
so has part: feature:427419-427570:-1:exon
so has part: feature:425569-425627:-1:exon
so has part: feature:423842-423986:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373882:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366692-366757:-1:exon
so has part: feature:365603-365641:-1:exon

XP_017913623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:431713-431827:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:430661-430741:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:427666-427739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:427419-427570:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425569-425627:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:423842-423986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:422671-422788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421635-421769:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:419976-420070:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:419101-419173:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:416123-416240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:406041-406214:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:404798-404905:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:399744-399899:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:397184-397301:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:390299-390454:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:387123-387218:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375530-375796:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:373639-373882:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:371443-371556:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:366692-366757:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:365603-365641:-1:exon

MTBP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MTBP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mdm2-binding protein isoform X3
translation: MIDIILLPSDKDPPKLRDCLPTVGALKHLKEWYSAKVTIAGDHCEINYQKIAEYLSANIVSFEDLRNAIDSKELWRGKIQIWERKFGSEISFPEFCLKGVTRKNFSTSNLKTCFLNKKLIPSKDKDILPKVFHYYGPALEFVQMIRLSDLPSCYMSDVEFELGLTRNSTKQSSRLLVEQISSLCGEAGALFVLPCTIGRILAPPPSQLSSRRWKEYMARKPRTISVPDVEVKGESSSYYLLLRGNGNGKCKATLIHSANQINGSFALSLIHGKLKAATEETRLSSPLDLSSLPRFSKEQLIQRERQLASAQASALKECLQRRKLAQQREVVSVDELKSLLTCTRERFLGHFDALIPKTSLIKTDETSNMLHDSSSLELTSSRLVETNPLEWPERHVLQNLETCEKAKQKMRTGSLPRSSEQLLGHKEGPRDSVTLLDAKELLKFFTSDGLPIGDLQPLQIQKGEKTFVLTPELSPRKLRGLPFEEASVCHYHGIEYCLDDRKALERDGGFLELQSRLIRYETQTTCTRGSSPGPAVLSPLPSPAVSSEPTSVPDGEALQSELRTDVPRVKRRSKDVNCLYPPKSRLVRSGSSDSLLSQTSGSARHRHAVPSRKPRAERLLPVPCPSALSREAPGATAKASSGPKAARESETARPAKESRSQKHTRILKEVVAEALKKHRITEAHECFPACSQRLFEISKFYLKDLKTSRGLFEEMKKTANSNVVQVIEWVLEKASKK
SIO_010081: MTBP
subclass of: SO_0000673
so part of: MTBP
location: complement(join(365603..365641,366692..366757,371443..371556,373639..373882,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423978))
location: region:365603-423978:-1
so has part: feature:423842-423978:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373882:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366692-366757:-1:exon
so has part: feature:365603-365641:-1:exon

XP_017913625.1
type: Protein
SIO_000068: ncbiprotein

position:423978:-1
position: 423978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:423842-423978:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:422671-422788:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421635-421769:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:419976-420070:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:419101-419173:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:416123-416240:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:406041-406214:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:404798-404905:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:399744-399899:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:397184-397301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:390299-390454:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:387123-387218:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:375530-375796:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:373639-373882:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:371443-371556:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:366692-366757:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:365603-365641:-1:exon

MTBP
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9925
gene: MTBP
product: MDM2 binding protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_001919110.1
SIO_010081: MTBP
so part of: MTBP
location: complement(join(366728..366757,371443..371556,373639..373839,375530..375796,387123..387218,390299..390454,397184..397301,399744..399899,404798..404905,406041..406214,416123..416240,419101..419173,419976..420070,421635..421769,422671..422788,423842..423986,425569..425627,427419..427570,427666..427739,430661..430741,431713..431866))
location: region:366728-431866:-1
so has part: feature:431713-431866:-1:exon
so has part: feature:430661-430741:-1:exon
so has part: feature:427666-427739:-1:exon
so has part: feature:427419-427570:-1:exon
so has part: feature:425569-425627:-1:exon
so has part: feature:423842-423986:-1:exon
so has part: feature:422671-422788:-1:exon
so has part: feature:421635-421769:-1:exon
so has part: feature:419976-420070:-1:exon
so has part: feature:419101-419173:-1:exon
so has part: feature:416123-416240:-1:exon
so has part: feature:406041-406214:-1:exon
so has part: feature:404798-404905:-1:exon
so has part: feature:399744-399899:-1:exon
so has part: feature:397184-397301:-1:exon
so has part: feature:390299-390454:-1:exon
so has part: feature:387123-387218:-1:exon
so has part: feature:375530-375796:-1:exon
so has part: feature:373639-373839:-1:exon
so has part: feature:371443-371556:-1:exon
so has part: feature:366728-366757:-1:exon

position:366728:-1
position: 366728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431713-431866:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:430661-430741:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:427666-427739:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:427419-427570:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425569-425627:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:423842-423986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:422671-422788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:421635-421769:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:419976-420070:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:419101-419173:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:416123-416240:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:406041-406214:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:404798-404905:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:399744-399899:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:397184-397301:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:390299-390454:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:387123-387218:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:375530-375796:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:373639-373839:-1:exon

position:373839:-1
position: 373839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:371443-371556:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:366728-366757:-1:exon

MRPL13
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: MRPL13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 432106..473158
location: region:432106-473158:1
so has part: feature:432106-473158:1:exon
subclass of: SO_0000010

102177734
type: Gene
SIO_000068: ncbigene

position:432106:1
position: 432106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:473158:1
position: 473158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432106-473158:1:exon

MRPL13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MRPL13
product: mitochondrial ribosomal protein L13, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_018058139.1
SIO_010081: MRPL13
subclass of: SO_0000673
so part of: MRPL13
location: join(432106..432215,436211..436334,441931..442024,446010..446070,457855..457976,472900..473158)
location: region:432106-473158:1
so has part: feature:432106-432215:1:exon
so has part: feature:436211-436334:1:exon
so has part: feature:441931-442024:1:exon
so has part: feature:446010-446070:1:exon
so has part: feature:457855-457976:1:exon
so has part: feature:472900-473158:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:432106-432215:1:exon

position:432215:1
position: 432215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:436211-436334:1:exon

position:436211:1
position: 436211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436334:1
position: 436334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:441931-442024:1:exon

position:441931:1
position: 441931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442024:1
position: 442024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:446010-446070:1:exon

position:446010:1
position: 446010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:446070:1
position: 446070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:457855-457976:1:exon

position:457855:1
position: 457855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:457976:1
position: 457976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:472900-473158:1:exon

position:472900:1
position: 472900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPL13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MRPL13
product: mitochondrial ribosomal protein L13, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_018058137.1
SIO_010081: MRPL13
subclass of: SO_0000673
so part of: MRPL13
location: join(432107..432215,436211..436334,441931..442024,446010..446070,450430..450516,457855..457976,472900..473158)
location: region:432107-473158:1
so has part: feature:432107-432215:1:exon
so has part: feature:436211-436334:1:exon
so has part: feature:441931-442024:1:exon
so has part: feature:446010-446070:1:exon
so has part: feature:450430-450516:1:exon
so has part: feature:457855-457976:1:exon
so has part: feature:472900-473158:1:exon

position:432107:1
position: 432107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432107-432215:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:436211-436334:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:441931-442024:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:446010-446070:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:450430-450516:1:exon

position:450430:1
position: 450430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:450516:1
position: 450516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:457855-457976:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:472900-473158:1:exon

MRPL13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MRPL13
product: mitochondrial ribosomal protein L13, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_018058138.1
SIO_010081: MRPL13
subclass of: SO_0000673
so part of: MRPL13
location: join(432122..432215,441931..442024,446010..446070,450430..450516,457855..457976,472900..473158)
location: region:432122-473158:1
so has part: feature:432122-432215:1:exon
so has part: feature:441931-442024:1:exon
so has part: feature:446010-446070:1:exon
so has part: feature:450430-450516:1:exon
so has part: feature:457855-457976:1:exon
so has part: feature:472900-473158:1:exon

position:432122:1
position: 432122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432122-432215:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:441931-442024:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:446010-446070:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:450430-450516:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:457855-457976:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:472900-473158:1:exon

MRPL13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MRPL13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 39S ribosomal protein L13, mitochondrial isoform X2
translation: MRGGPGPWRKRGAAAREHGESVQGAAGDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL
SIO_010081: MRPL13
subclass of: SO_0000673
so part of: MRPL13
location: join(432137..432215,441931..442024,446010..446070,450430..450516,457855..457976,472900..472921)
location: region:432137-472921:1
so has part: feature:432137-432215:1:exon
so has part: feature:441931-442024:1:exon
so has part: feature:446010-446070:1:exon
so has part: feature:450430-450516:1:exon
so has part: feature:457855-457976:1:exon
so has part: feature:472900-472921:1:exon

XP_017913627.1
type: Protein
SIO_000068: ncbiprotein

position:432137:1
position: 432137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:472921:1
position: 472921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432137-432215:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:441931-442024:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:446010-446070:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:450430-450516:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:457855-457976:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:472900-472921:1:exon

MRPL13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MRPL13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 39S ribosomal protein L13, mitochondrial isoform X1
translation: MASLSRAPQQWATFARVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDILKNLTEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL
SIO_010081: MRPL13
subclass of: SO_0000673
so part of: MRPL13
location: join(432189..432215,436211..436334,441931..442024,446010..446070,450430..450516,457855..457976,472900..472921)
location: region:432189-472921:1
so has part: feature:432189-432215:1:exon
so has part: feature:436211-436334:1:exon
so has part: feature:441931-442024:1:exon
so has part: feature:446010-446070:1:exon
so has part: feature:450430-450516:1:exon
so has part: feature:457855-457976:1:exon
so has part: feature:472900-472921:1:exon

XP_017913626.1
type: Protein
SIO_000068: ncbiprotein

position:432189:1
position: 432189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:432189-432215:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:436211-436334:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:441931-442024:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:446010-446070:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:450430-450516:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:457855-457976:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:472900-472921:1:exon

MRPL13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MRPL13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 39S ribosomal protein L13, mitochondrial isoform X3
translation: MASLSRAPQQWATFARVWYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFKQVTAAQLHRKDPVADIPEDILKNLTEELPQPRKVPRRLDEYTQEEIEAFPRVWSPPEDYRL
SIO_010081: MRPL13
subclass of: SO_0000673
so part of: MRPL13
location: join(432189..432215,436211..436334,441931..442024,446010..446070,457855..457976,472900..472921)
location: region:432189-472921:1
so has part: feature:432189-432215:1:exon
so has part: feature:436211-436334:1:exon
so has part: feature:441931-442024:1:exon
so has part: feature:446010-446070:1:exon
so has part: feature:457855-457976:1:exon
so has part: feature:472900-472921:1:exon

XP_017913628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:432189-432215:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:436211-436334:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:441931-442024:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:446010-446070:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:457855-457976:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:472900-472921:1:exon

LOC106502858
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC106502858
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 479398..508143
location: region:479398-508143:1
so has part: feature:479398-508143:1:exon
subclass of: SO_0000011

106502858
type: Gene
SIO_000068: ncbigene

position:479398:1
position: 479398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:508143:1
position: 508143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:479398-508143:1:exon

LOC106502858
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC106502858
product: uncharacterized LOC106502858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_001919111.1
SIO_010081: LOC106502858
subclass of: SO_0000673
so part of: LOC106502858
location: join(479398..479747,507375..508143)
location: region:479398-508143:1
so has part: feature:479398-479747:1:exon
so has part: feature:507375-508143:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:479398-479747:1:exon

position:479747:1
position: 479747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:507375-508143:1:exon

position:507375:1
position: 507375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COL14A1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: COL14A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(489696..717115)
location: region:489696-717115:-1
so has part: feature:489696-717115:-1:exon
subclass of: SO_0000010

102178089
type: Gene
SIO_000068: ncbigene

position:489696:-1
position: 489696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:717115:-1
position: 717115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:489696-717115:-1:exon

COL14A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: COL14A1
product: collagen type XIV alpha 1 chain, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_018058141.1
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(489696..490537,492168..492323,494425..494502,517935..518123,520409..520475,521396..521431,533682..533753,534220..534273,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701198,717019..717115))
location: region:489696-717115:-1
so has part: feature:717019-717115:-1:exon
so has part: feature:701073-701198:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:534220-534273:-1:exon
so has part: feature:533682-533753:-1:exon
so has part: feature:521396-521431:-1:exon
so has part: feature:520409-520475:-1:exon
so has part: feature:517935-518123:-1:exon
so has part: feature:494425-494502:-1:exon
so has part: feature:492168-492323:-1:exon
so has part: feature:489696-490537:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:717019-717115:-1:exon

position:717019:-1
position: 717019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:701073-701198:-1:exon

position:701073:-1
position: 701073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:701198:-1
position: 701198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:695926-696042:-1:exon

position:695926:-1
position: 695926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:696042:-1
position: 696042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:691836-691979:-1:exon

position:691836:-1
position: 691836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:691979:-1
position: 691979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:684805-684894:-1:exon

position:684805:-1
position: 684805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:684894:-1
position: 684894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:660541-660696:-1:exon

position:660541:-1
position: 660541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:660696:-1
position: 660696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:659459-659578:-1:exon

position:659459:-1
position: 659459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:659578:-1
position: 659578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:657430-657594:-1:exon

position:657430:-1
position: 657430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:657594:-1
position: 657594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:654150-654311:-1:exon

position:654150:-1
position: 654150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:654311:-1
position: 654311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:648360-648511:-1:exon

position:648360:-1
position: 648360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648511:-1
position: 648511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:647103-647232:-1:exon

position:647103:-1
position: 647103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:647232:-1
position: 647232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:644941-645086:-1:exon

position:644941:-1
position: 644941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:645086:-1
position: 645086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:641095-641224:-1:exon

position:641095:-1
position: 641095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:641224:-1
position: 641224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:636474-636613:-1:exon

position:636474:-1
position: 636474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:636613:-1
position: 636613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:629668-629794:-1:exon

position:629668:-1
position: 629668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:629794:-1
position: 629794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:627922-628061:-1:exon

position:627922:-1
position: 627922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:628061:-1
position: 628061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:627089-627221:-1:exon

position:627089:-1
position: 627089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627221:-1
position: 627221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:625826-625888:-1:exon

position:625826:-1
position: 625826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:625888:-1
position: 625888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:623606-623757:-1:exon

position:623606:-1
position: 623606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:623757:-1
position: 623757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:616340-616469:-1:exon

position:616340:-1
position: 616340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:616469:-1
position: 616469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:613390-613512:-1:exon

position:613390:-1
position: 613390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613512:-1
position: 613512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:611696-611845:-1:exon

position:611696:-1
position: 611696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:611845:-1
position: 611845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:608325-608441:-1:exon

position:608325:-1
position: 608325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608441:-1
position: 608441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:596430-596576:-1:exon

position:596430:-1
position: 596430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:596576:-1
position: 596576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:592071-592127:-1:exon

position:592071:-1
position: 592071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592127:-1
position: 592127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:586162-586301:-1:exon

position:586162:-1
position: 586162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586301:-1
position: 586301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:584639-584762:-1:exon

position:584639:-1
position: 584639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584762:-1
position: 584762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:584296-584439:-1:exon

position:584296:-1
position: 584296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584439:-1
position: 584439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:583035-583199:-1:exon

position:583035:-1
position: 583035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583199:-1
position: 583199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:582417-582455:-1:exon

position:582417:-1
position: 582417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582455:-1
position: 582455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:582139-582277:-1:exon

position:582139:-1
position: 582139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582277:-1
position: 582277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:577462-577604:-1:exon

position:577462:-1
position: 577462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577604:-1
position: 577604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:573800-573909:-1:exon

position:573800:-1
position: 573800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573909:-1
position: 573909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:571501-571659:-1:exon

position:571501:-1
position: 571501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571659:-1
position: 571659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:562566-562643:-1:exon

position:562566:-1
position: 562566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562643:-1
position: 562643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:559737-559823:-1:exon

position:559737:-1
position: 559737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:559823:-1
position: 559823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:553562-553615:-1:exon

position:553562:-1
position: 553562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:553615:-1
position: 553615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:550608-550703:-1:exon

position:550608:-1
position: 550608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:550703:-1
position: 550703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:549369-549422:-1:exon

position:549369:-1
position: 549369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549422:-1
position: 549422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:548949-549002:-1:exon

position:548949:-1
position: 548949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549002:-1
position: 549002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:534220-534273:-1:exon

position:534220:-1
position: 534220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:534273:-1
position: 534273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 42
SIO_000628: feature:533682-533753:-1:exon

position:533682:-1
position: 533682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:533753:-1
position: 533753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 43
SIO_000628: feature:521396-521431:-1:exon

position:521396:-1
position: 521396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:521431:-1
position: 521431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 44
SIO_000628: feature:520409-520475:-1:exon

position:520409:-1
position: 520409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:520475:-1
position: 520475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 45
SIO_000628: feature:517935-518123:-1:exon

position:517935:-1
position: 517935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518123:-1
position: 518123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 46
SIO_000628: feature:494425-494502:-1:exon

position:494425:-1
position: 494425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:494502:-1
position: 494502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 47
SIO_000628: feature:492168-492323:-1:exon

position:492168:-1
position: 492168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:492323:-1
position: 492323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 48
SIO_000628: feature:489696-490537:-1:exon

position:490537:-1
position: 490537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL14A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: COL14A1
product: collagen type XIV alpha 1 chain, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_018058140.1
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(489696..490537,492168..492323,494425..494502,517935..518123,520409..520475,521396..521431,533682..533753,534220..534273,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701198,715977..716260))
location: region:489696-716260:-1
so has part: feature:715977-716260:-1:exon
so has part: feature:701073-701198:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:534220-534273:-1:exon
so has part: feature:533682-533753:-1:exon
so has part: feature:521396-521431:-1:exon
so has part: feature:520409-520475:-1:exon
so has part: feature:517935-518123:-1:exon
so has part: feature:494425-494502:-1:exon
so has part: feature:492168-492323:-1:exon
so has part: feature:489696-490537:-1:exon

position:716260:-1
position: 716260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715977-716260:-1:exon

position:715977:-1
position: 715977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:701073-701198:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:534220-534273:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:533682-533753:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:521396-521431:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:520409-520475:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:517935-518123:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:494425-494502:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:492168-492323:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:489696-490537:-1:exon

COL14A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: COL14A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(XIV) chain isoform X1
translation: MWKTRNKMKIFHCKMQYWVFPAFFVITYLCTIVQGQVPPPTRLRYNVLSHDSIQISWKAPRGKFGGYKLLVTPASGGKTNQLNLQNTATKAIIQGLMPDQNYTVQIIAYNKDKESKPAQGQFRIKDLEKRKEPKPRVKVVDKGSENKPSGPEEEVKFFCQTPAIADIVILVDGSWSIGRFNFRLVRSFLENLVTAFDVGSEKTRIGLAQYSGDPRIEWHLNAFNTKDEVIEAVRNLPYKGGNTLTGLALNYIFENSFKPEAGARTGVSKIGILITDGKSQDDIIPPSRNLRESGVELFAIGVKNADEKELQEIASEPDSTHVYNVAEFDLMHTVVESLTRTVCSRVEEQDREIKASALATIGPPTELMTSEVTARSFMVNWTHAPGKVEKYRVVYYPTRGGKPEEVVVDGRVSSTVLRNLMSLTEYQIAVFAIYAHTASEGLRGTETTLSLPIASDLELYDVTESSLRVRWNPVPGASGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLLPNTEYTVTVYAMFGEEASDPVTGQETTLPLSPPRNLRVSNIGSSSARLAWDATSAKINGYRIVYNNADGTEINEVEVDPVTTFPLKGLTPLTEYTVAIFSIYDEGQSEPLTGIFTTEEVPAQQYLEIDEVTPDSFRVSWHPLSADEGQHKLMWIPVYGGRTEEVVLKEDQDSYVIEGLEPGTEYEVSLLAVLDDGSESEVVTAVGTTLDSFWTEPPTTEEAPTRPVTSVFRTGIRNLVVDDETASSLRVAWDISDSSVQQFRVTYLTAPGDPAEEVLGTIMVPGSQNTLLLKNLLSETEYKVTVTPIYDDGEGVSVSAPGKTLPPSGPQNLRVSEEWYNRLRITWDPPSSPVKGYRIVYKPVSVAGPTLETFVGANINTILITNLLSGMDYNVKIFASQASGFSDALTGVVKTLFLGVTDLQADAIQTTSLCARWQVQRHATAYRIVLESRQDAQKQESTLGGGTNRHCFYGLQPDSEYKISVYTKLQEMEGPSVSIMGKTQSLPTQPPTFPPTIPPAKEVCKAAKADLVFMVDGSWSIGDENFNKIINFLYSTVGALNKIGADGTQVAMVQFTDDPRTEFKLNSYKTKETLLDAIKHISYKGGNTKTGKAIKHVRDSLFTAESGTRRGIPKVIVVITDGRSQDDVNKIAREMQSDGYSIFAVGVADADYSELVSIGSKPSARHVFFVDDFDAFKKIEDELITFVCETASATCPLVHKDGIDLAGFKMMEMFGLVEKEFSSVEGVSMEPGTFNVYPCYQLHKDALVSQPTKYLHPDGLPSDYTISILFRILPDTPEEPFALWEILNKNSDPLVGVILDNGGKTLTYFNYDYSGDFQTVTFEGPEIRKIFYGSFHKLHIVVSKTLAKVVIDCKQVGEKAINASSNITLDGVEVLGRMVRSRGPNGNSAPFQLQMFDIVCSTSWANKDKCCELPALRDEEACPELPHACSCSEINKAALGPAGPPGGPGLRGPKGQRGDPGLKGPDGPRGETGPPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGSPGQRGFPGKDGSSGPPGPPGPIGIPGAPGVPGVTGSMGPQGALGPPGVPGAKGERGERGDLQSQAMVRAVARQVCEQLIQSHMSRYTAILNQIPSHSTSVRTIQGPPGEPGRPGSPGTPGEQGPPGAPGFPGNAGVPGSPGERGLTGVKGEKGNPGIGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVGAPHPDQPEFTPVQDELEALELWGSGI
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(490458..490537,492168..492323,494425..494502,517935..518123,520409..520475,521396..521431,533682..533753,534220..534273,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701181))
location: region:490458-701181:-1
so has part: feature:701073-701181:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:534220-534273:-1:exon
so has part: feature:533682-533753:-1:exon
so has part: feature:521396-521431:-1:exon
so has part: feature:520409-520475:-1:exon
so has part: feature:517935-518123:-1:exon
so has part: feature:494425-494502:-1:exon
so has part: feature:492168-492323:-1:exon
so has part: feature:490458-490537:-1:exon

XP_017913629.1
type: Protein
SIO_000068: ncbiprotein

position:490458:-1
position: 490458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:701181:-1
position: 701181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701073-701181:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:534220-534273:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:533682-533753:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:521396-521431:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:520409-520475:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:517935-518123:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:494425-494502:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:492168-492323:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:490458-490537:-1:exon

COL14A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: COL14A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(XIV) chain isoform X1
translation: MWKTRNKMKIFHCKMQYWVFPAFFVITYLCTIVQGQVPPPTRLRYNVLSHDSIQISWKAPRGKFGGYKLLVTPASGGKTNQLNLQNTATKAIIQGLMPDQNYTVQIIAYNKDKESKPAQGQFRIKDLEKRKEPKPRVKVVDKGSENKPSGPEEEVKFFCQTPAIADIVILVDGSWSIGRFNFRLVRSFLENLVTAFDVGSEKTRIGLAQYSGDPRIEWHLNAFNTKDEVIEAVRNLPYKGGNTLTGLALNYIFENSFKPEAGARTGVSKIGILITDGKSQDDIIPPSRNLRESGVELFAIGVKNADEKELQEIASEPDSTHVYNVAEFDLMHTVVESLTRTVCSRVEEQDREIKASALATIGPPTELMTSEVTARSFMVNWTHAPGKVEKYRVVYYPTRGGKPEEVVVDGRVSSTVLRNLMSLTEYQIAVFAIYAHTASEGLRGTETTLSLPIASDLELYDVTESSLRVRWNPVPGASGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLLPNTEYTVTVYAMFGEEASDPVTGQETTLPLSPPRNLRVSNIGSSSARLAWDATSAKINGYRIVYNNADGTEINEVEVDPVTTFPLKGLTPLTEYTVAIFSIYDEGQSEPLTGIFTTEEVPAQQYLEIDEVTPDSFRVSWHPLSADEGQHKLMWIPVYGGRTEEVVLKEDQDSYVIEGLEPGTEYEVSLLAVLDDGSESEVVTAVGTTLDSFWTEPPTTEEAPTRPVTSVFRTGIRNLVVDDETASSLRVAWDISDSSVQQFRVTYLTAPGDPAEEVLGTIMVPGSQNTLLLKNLLSETEYKVTVTPIYDDGEGVSVSAPGKTLPPSGPQNLRVSEEWYNRLRITWDPPSSPVKGYRIVYKPVSVAGPTLETFVGANINTILITNLLSGMDYNVKIFASQASGFSDALTGVVKTLFLGVTDLQADAIQTTSLCARWQVQRHATAYRIVLESRQDAQKQESTLGGGTNRHCFYGLQPDSEYKISVYTKLQEMEGPSVSIMGKTQSLPTQPPTFPPTIPPAKEVCKAAKADLVFMVDGSWSIGDENFNKIINFLYSTVGALNKIGADGTQVAMVQFTDDPRTEFKLNSYKTKETLLDAIKHISYKGGNTKTGKAIKHVRDSLFTAESGTRRGIPKVIVVITDGRSQDDVNKIAREMQSDGYSIFAVGVADADYSELVSIGSKPSARHVFFVDDFDAFKKIEDELITFVCETASATCPLVHKDGIDLAGFKMMEMFGLVEKEFSSVEGVSMEPGTFNVYPCYQLHKDALVSQPTKYLHPDGLPSDYTISILFRILPDTPEEPFALWEILNKNSDPLVGVILDNGGKTLTYFNYDYSGDFQTVTFEGPEIRKIFYGSFHKLHIVVSKTLAKVVIDCKQVGEKAINASSNITLDGVEVLGRMVRSRGPNGNSAPFQLQMFDIVCSTSWANKDKCCELPALRDEEACPELPHACSCSEINKAALGPAGPPGGPGLRGPKGQRGDPGLKGPDGPRGETGPPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGSPGQRGFPGKDGSSGPPGPPGPIGIPGAPGVPGVTGSMGPQGALGPPGVPGAKGERGERGDLQSQAMVRAVARQVCEQLIQSHMSRYTAILNQIPSHSTSVRTIQGPPGEPGRPGSPGTPGEQGPPGAPGFPGNAGVPGSPGERGLTGVKGEKGNPGIGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVGAPHPDQPEFTPVQDELEALELWGSGI
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(490458..490537,492168..492323,494425..494502,517935..518123,520409..520475,521396..521431,533682..533753,534220..534273,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701181))
location: region:490458-701181:-1
so has part: feature:701073-701181:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:534220-534273:-1:exon
so has part: feature:533682-533753:-1:exon
so has part: feature:521396-521431:-1:exon
so has part: feature:520409-520475:-1:exon
so has part: feature:517935-518123:-1:exon
so has part: feature:494425-494502:-1:exon
so has part: feature:492168-492323:-1:exon
so has part: feature:490458-490537:-1:exon

XP_017913630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:701073-701181:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:534220-534273:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:533682-533753:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:521396-521431:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:520409-520475:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:517935-518123:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:494425-494502:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:492168-492323:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:490458-490537:-1:exon

COL14A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: COL14A1
product: collagen type XIV alpha 1 chain, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 26 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_018058142.1
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(490763..491386,492168..492323,494425..494502,517935..518123,520409..520475,521396..521431,533682..533753,534220..534273,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701198,715977..716260))
location: region:490763-716260:-1
so has part: feature:715977-716260:-1:exon
so has part: feature:701073-701198:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:534220-534273:-1:exon
so has part: feature:533682-533753:-1:exon
so has part: feature:521396-521431:-1:exon
so has part: feature:520409-520475:-1:exon
so has part: feature:517935-518123:-1:exon
so has part: feature:494425-494502:-1:exon
so has part: feature:492168-492323:-1:exon
so has part: feature:490763-491386:-1:exon

position:490763:-1
position: 490763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715977-716260:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:701073-701198:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:534220-534273:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:533682-533753:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:521396-521431:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:520409-520475:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:517935-518123:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:494425-494502:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:492168-492323:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:490763-491386:-1:exon

position:491386:-1
position: 491386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL14A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: COL14A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(XIV) chain isoform X2
translation: MWKTRNKMKIFHCKMQYWVFPAFFVITYLCTIVQGQVPPPTRLRYNVLSHDSIQISWKAPRGKFGGYKLLVTPASGGKTNQLNLQNTATKAIIQGLMPDQNYTVQIIAYNKDKESKPAQGQFRIKDLEKRKEPKPRVKVVDKGSENKPSGPEEEVKFFCQTPAIADIVILVDGSWSIGRFNFRLVRSFLENLVTAFDVGSEKTRIGLAQYSGDPRIEWHLNAFNTKDEVIEAVRNLPYKGGNTLTGLALNYIFENSFKPEAGARTGVSKIGILITDGKSQDDIIPPSRNLRESGVELFAIGVKNADEKELQEIASEPDSTHVYNVAEFDLMHTVVESLTRTVCSRVEEQDREIKASALATIGPPTELMTSEVTARSFMVNWTHAPGKVEKYRVVYYPTRGGKPEEVVVDGRVSSTVLRNLMSLTEYQIAVFAIYAHTASEGLRGTETTLSLPIASDLELYDVTESSLRVRWNPVPGASGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLLPNTEYTVTVYAMFGEEASDPVTGQETTLPLSPPRNLRVSNIGSSSARLAWDATSAKINGYRIVYNNADGTEINEVEVDPVTTFPLKGLTPLTEYTVAIFSIYDEGQSEPLTGIFTTEEVPAQQYLEIDEVTPDSFRVSWHPLSADEGQHKLMWIPVYGGRTEEVVLKEDQDSYVIEGLEPGTEYEVSLLAVLDDGSESEVVTAVGTTLDSFWTEPPTTEEAPTRPVTSVFRTGIRNLVVDDETASSLRVAWDISDSSVQQFRVTYLTAPGDPAEEVLGTIMVPGSQNTLLLKNLLSETEYKVTVTPIYDDGEGVSVSAPGKTLPPSGPQNLRVSEEWYNRLRITWDPPSSPVKGYRIVYKPVSVAGPTLETFVGANINTILITNLLSGMDYNVKIFASQASGFSDALTGVVKTLFLGVTDLQADAIQTTSLCARWQVQRHATAYRIVLESRQDAQKQESTLGGGTNRHCFYGLQPDSEYKISVYTKLQEMEGPSVSIMGKTQSLPTQPPTFPPTIPPAKEVCKAAKADLVFMVDGSWSIGDENFNKIINFLYSTVGALNKIGADGTQVAMVQFTDDPRTEFKLNSYKTKETLLDAIKHISYKGGNTKTGKAIKHVRDSLFTAESGTRRGIPKVIVVITDGRSQDDVNKIAREMQSDGYSIFAVGVADADYSELVSIGSKPSARHVFFVDDFDAFKKIEDELITFVCETASATCPLVHKDGIDLAGFKMMEMFGLVEKEFSSVEGVSMEPGTFNVYPCYQLHKDALVSQPTKYLHPDGLPSDYTISILFRILPDTPEEPFALWEILNKNSDPLVGVILDNGGKTLTYFNYDYSGDFQTVTFEGPEIRKIFYGSFHKLHIVVSKTLAKVVIDCKQVGEKAINASSNITLDGVEVLGRMVRSRGPNGNSAPFQLQMFDIVCSTSWANKDKCCELPALRDEEACPELPHACSCSEINKAALGPAGPPGGPGLRGPKGQRGDPGLKGPDGPRGETGPPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGSPGQRGFPGKDGSSGPPGPPGPIGIPGAPGVPGVTGSMGPQGALGPPGVPGAKGERGERGDLQSQAMVRAVARQVCEQLIQSHMSRYTAILNQIPSHSTSVRTIQGPPGEPGRPGSPGTPGEQGPPGAPGFPGNAGVPGSPGERGLTGVKGEKGNPGIGTQGPRGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAYGVGDLVPYDDFQH
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(491355..491386,492168..492323,494425..494502,517935..518123,520409..520475,521396..521431,533682..533753,534220..534273,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701181))
location: region:491355-701181:-1
so has part: feature:701073-701181:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:534220-534273:-1:exon
so has part: feature:533682-533753:-1:exon
so has part: feature:521396-521431:-1:exon
so has part: feature:520409-520475:-1:exon
so has part: feature:517935-518123:-1:exon
so has part: feature:494425-494502:-1:exon
so has part: feature:492168-492323:-1:exon
so has part: feature:491355-491386:-1:exon

XP_017913631.1
type: Protein
SIO_000068: ncbiprotein

position:491355:-1
position: 491355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701073-701181:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:534220-534273:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:533682-533753:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:521396-521431:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:520409-520475:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:517935-518123:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:494425-494502:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:492168-492323:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:491355-491386:-1:exon

COL14A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: COL14A1
product: collagen type XIV alpha 1 chain, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_018058143.1
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(548537..548596,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701198,715977..716261))
location: region:548537-716261:-1
so has part: feature:715977-716261:-1:exon
so has part: feature:701073-701198:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:548537-548596:-1:exon

position:548537:-1
position: 548537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:716261:-1
position: 716261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715977-716261:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:701073-701198:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:548537-548596:-1:exon

position:548596:-1
position: 548596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COL14A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: COL14A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(XIV) chain isoform X3
translation: MWKTRNKMKIFHCKMQYWVFPAFFVITYLCTIVQGQVPPPTRLRYNVLSHDSIQISWKAPRGKFGGYKLLVTPASGGKTNQLNLQNTATKAIIQGLMPDQNYTVQIIAYNKDKESKPAQGQFRIKDLEKRKEPKPRVKVVDKGSENKPSGPEEEVKFFCQTPAIADIVILVDGSWSIGRFNFRLVRSFLENLVTAFDVGSEKTRIGLAQYSGDPRIEWHLNAFNTKDEVIEAVRNLPYKGGNTLTGLALNYIFENSFKPEAGARTGVSKIGILITDGKSQDDIIPPSRNLRESGVELFAIGVKNADEKELQEIASEPDSTHVYNVAEFDLMHTVVESLTRTVCSRVEEQDREIKASALATIGPPTELMTSEVTARSFMVNWTHAPGKVEKYRVVYYPTRGGKPEEVVVDGRVSSTVLRNLMSLTEYQIAVFAIYAHTASEGLRGTETTLSLPIASDLELYDVTESSLRVRWNPVPGASGYLILYAPLTEGLAGDEKEMKIGETHTDIELSGLLPNTEYTVTVYAMFGEEASDPVTGQETTLPLSPPRNLRVSNIGSSSARLAWDATSAKINGYRIVYNNADGTEINEVEVDPVTTFPLKGLTPLTEYTVAIFSIYDEGQSEPLTGIFTTEEVPAQQYLEIDEVTPDSFRVSWHPLSADEGQHKLMWIPVYGGRTEEVVLKEDQDSYVIEGLEPGTEYEVSLLAVLDDGSESEVVTAVGTTLDSFWTEPPTTEEAPTRPVTSVFRTGIRNLVVDDETASSLRVAWDISDSSVQQFRVTYLTAPGDPAEEVLGTIMVPGSQNTLLLKNLLSETEYKVTVTPIYDDGEGVSVSAPGKTLPPSGPQNLRVSEEWYNRLRITWDPPSSPVKGYRIVYKPVSVAGPTLETFVGANINTILITNLLSGMDYNVKIFASQASGFSDALTGVVKTLFLGVTDLQADAIQTTSLCARWQVQRHATAYRIVLESRQDAQKQESTLGGGTNRHCFYGLQPDSEYKISVYTKLQEMEGPSVSIMGKTQSLPTQPPTFPPTIPPAKEVCKAAKADLVFMVDGSWSIGDENFNKIINFLYSTVGALNKIGADGTQVAMVQFTDDPRTEFKLNSYKTKETLLDAIKHISYKGGNTKTGKAIKHVRDSLFTAESGTRRGIPKVIVVITDGRSQDDVNKIAREMQSDGYSIFAVGVADADYSELVSIGSKPSARHVFFVDDFDAFKKIEDELITFVCETASATCPLVHKDGIDLAGFKMMEMFGLVEKEFSSVEGVSMEPGTFNVYPCYQLHKDALVSQPTKYLHPDGLPSDYTISILFRILPDTPEEPFALWEILNKNSDPLVGVILDNGGKTLTYFNYDYSGDFQTVTFEGPEIRKIFYGSFHKLHIVVSKTLAKVVIDCKQVGEKAINASSNITLDGVEVLGRMVRSRGPNGNSAPFQLQMFDIVCSTSWANKDKCCELPALRDEEACPELPHACSCSEINKAALGPAGPPGGPGLRGPKGQRGDPGLKGPDGPRGETGPPGPQGPPGPQGPSGLSIQGMPGMPGEKGEKGDTGLPGPQGVPGSVGSPGRDGSPGQREQAQRKSGILRTGI
SIO_010081: COL14A1
subclass of: SO_0000673
so part of: COL14A1
location: complement(join(548552..548596,548949..549002,549369..549422,550608..550703,553562..553615,559737..559823,562566..562643,571501..571659,573800..573909,577462..577604,582139..582277,582417..582455,583035..583199,584296..584439,584639..584762,586162..586301,592071..592127,596430..596576,608325..608441,611696..611845,613390..613512,616340..616469,623606..623757,625826..625888,627089..627221,627922..628061,629668..629794,636474..636613,641095..641224,644941..645086,647103..647232,648360..648511,654150..654311,657430..657594,659459..659578,660541..660696,684805..684894,691836..691979,695926..696042,701073..701181))
location: region:548552-701181:-1
so has part: feature:701073-701181:-1:exon
so has part: feature:695926-696042:-1:exon
so has part: feature:691836-691979:-1:exon
so has part: feature:684805-684894:-1:exon
so has part: feature:660541-660696:-1:exon
so has part: feature:659459-659578:-1:exon
so has part: feature:657430-657594:-1:exon
so has part: feature:654150-654311:-1:exon
so has part: feature:648360-648511:-1:exon
so has part: feature:647103-647232:-1:exon
so has part: feature:644941-645086:-1:exon
so has part: feature:641095-641224:-1:exon
so has part: feature:636474-636613:-1:exon
so has part: feature:629668-629794:-1:exon
so has part: feature:627922-628061:-1:exon
so has part: feature:627089-627221:-1:exon
so has part: feature:625826-625888:-1:exon
so has part: feature:623606-623757:-1:exon
so has part: feature:616340-616469:-1:exon
so has part: feature:613390-613512:-1:exon
so has part: feature:611696-611845:-1:exon
so has part: feature:608325-608441:-1:exon
so has part: feature:596430-596576:-1:exon
so has part: feature:592071-592127:-1:exon
so has part: feature:586162-586301:-1:exon
so has part: feature:584639-584762:-1:exon
so has part: feature:584296-584439:-1:exon
so has part: feature:583035-583199:-1:exon
so has part: feature:582417-582455:-1:exon
so has part: feature:582139-582277:-1:exon
so has part: feature:577462-577604:-1:exon
so has part: feature:573800-573909:-1:exon
so has part: feature:571501-571659:-1:exon
so has part: feature:562566-562643:-1:exon
so has part: feature:559737-559823:-1:exon
so has part: feature:553562-553615:-1:exon
so has part: feature:550608-550703:-1:exon
so has part: feature:549369-549422:-1:exon
so has part: feature:548949-549002:-1:exon
so has part: feature:548552-548596:-1:exon

XP_017913632.1
type: Protein
SIO_000068: ncbiprotein

position:548552:-1
position: 548552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:701073-701181:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:695926-696042:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:691836-691979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:684805-684894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:660541-660696:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:659459-659578:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:657430-657594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:654150-654311:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:648360-648511:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:647103-647232:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:644941-645086:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:641095-641224:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:636474-636613:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:629668-629794:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:627922-628061:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:627089-627221:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:625826-625888:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:623606-623757:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:616340-616469:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:613390-613512:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:611696-611845:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:608325-608441:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:596430-596576:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:592071-592127:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:586162-586301:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:584639-584762:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:584296-584439:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:583035-583199:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:582417-582455:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:582139-582277:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:577462-577604:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:573800-573909:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:571501-571659:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:562566-562643:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:559737-559823:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:553562-553615:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:550608-550703:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:549369-549422:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:548949-549002:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:548552-548596:-1:exon

DEPTOR
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: DEPTOR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(776323..934705)
location: region:776323-934705:-1
so has part: feature:776323-934705:-1:exon
subclass of: SO_0000010

102177816
type: Gene
SIO_000068: ncbigene

position:776323:-1
position: 776323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:934705:-1
position: 934705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:776323-934705:-1:exon

DEPTOR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DEPTOR
product: DEP domain containing MTOR-interacting protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 mRNAs, 3 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_018058144.1
SIO_010081: DEPTOR
subclass of: SO_0000673
so part of: DEPTOR
location: complement(join(776323..779329,817582..817686,820703..820773,825743..825877,827859..828044,854733..854911,883420..883543,884678..884856,934034..934705))
location: region:776323-934705:-1
so has part: feature:934034-934705:-1:exon
so has part: feature:884678-884856:-1:exon
so has part: feature:883420-883543:-1:exon
so has part: feature:854733-854911:-1:exon
so has part: feature:827859-828044:-1:exon
so has part: feature:825743-825877:-1:exon
so has part: feature:820703-820773:-1:exon
so has part: feature:817582-817686:-1:exon
so has part: feature:776323-779329:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:934034-934705:-1:exon

position:934034:-1
position: 934034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:884678-884856:-1:exon

position:884678:-1
position: 884678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:884856:-1
position: 884856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:883420-883543:-1:exon

position:883420:-1
position: 883420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:883543:-1
position: 883543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:854733-854911:-1:exon

position:854733:-1
position: 854733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:854911:-1
position: 854911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:827859-828044:-1:exon

position:827859:-1
position: 827859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:828044:-1
position: 828044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:825743-825877:-1:exon

position:825743:-1
position: 825743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:825877:-1
position: 825877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:820703-820773:-1:exon

position:820703:-1
position: 820703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:820773:-1
position: 820773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:817582-817686:-1:exon

position:817582:-1
position: 817582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817686:-1
position: 817686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:776323-779329:-1:exon

position:779329:-1
position: 779329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DEPTOR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DEPTOR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DEP domain-containing mTOR-interacting protein isoform X1
translation: MEGGGGGDGGARQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKDDGTFPLDSEVKAFMRGQRLYEKLMSPENTLLQPREEEGVKYERTFMASEFLDWLVQEGEATAREEAEQLCRRLLEHGIIQHVSNKHPFVDSNLLYQFRMNFRRRRRLMELLSEKSPSSQETHDSPFCLRKQGHDNRKSASFMSVSPSKEIKVASAARRSSMSSCGSGGYFSSSPTLSSSPPVPCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLHVDYRTVSNLILTGPRTIVMEVMEELEC
SIO_010081: DEPTOR
subclass of: SO_0000673
so part of: DEPTOR
location: complement(join(779201..779329,817582..817686,820703..820773,825743..825877,827859..828044,854733..854911,883420..883543,884678..884856,934034..934122))
location: region:779201-934122:-1
so has part: feature:934034-934122:-1:exon
so has part: feature:884678-884856:-1:exon
so has part: feature:883420-883543:-1:exon
so has part: feature:854733-854911:-1:exon
so has part: feature:827859-828044:-1:exon
so has part: feature:825743-825877:-1:exon
so has part: feature:820703-820773:-1:exon
so has part: feature:817582-817686:-1:exon
so has part: feature:779201-779329:-1:exon

XP_017913633.1
type: Protein
SIO_000068: ncbiprotein

position:779201:-1
position: 779201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:934122:-1
position: 934122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:934034-934122:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:884678-884856:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:883420-883543:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:854733-854911:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:827859-828044:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:825743-825877:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:820703-820773:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:817582-817686:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:779201-779329:-1:exon

DEPTOR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DEPTOR
product: DEP domain containing MTOR-interacting protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_018058145.1
SIO_010081: DEPTOR
subclass of: SO_0000673
so part of: DEPTOR
location: complement(join(804011..804286,817582..817686,820703..820773,825743..825877,827859..828044,854733..854911,883420..883543,884678..884856,934034..934705))
location: region:804011-934705:-1
so has part: feature:934034-934705:-1:exon
so has part: feature:884678-884856:-1:exon
so has part: feature:883420-883543:-1:exon
so has part: feature:854733-854911:-1:exon
so has part: feature:827859-828044:-1:exon
so has part: feature:825743-825877:-1:exon
so has part: feature:820703-820773:-1:exon
so has part: feature:817582-817686:-1:exon
so has part: feature:804011-804286:-1:exon

position:804011:-1
position: 804011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:934034-934705:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:884678-884856:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:883420-883543:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:854733-854911:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:827859-828044:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:825743-825877:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:820703-820773:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:817582-817686:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:804011-804286:-1:exon

position:804286:-1
position: 804286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DEPTOR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DEPTOR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DEP domain-containing mTOR-interacting protein isoform X2
translation: MEGGGGGDGGARQRELERMAEVLVTGEQLRLRLHEEKVIKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVCDEHKEFKDVKLFYRFRKDDGTFPLDSEVKAFMRGQRLYEKLMSPENTLLQPREEEGVKYERTFMASEFLDWLVQEGEATAREEAEQLCRRLLEHGIIQHVSNKHPFVDSNLLYQFRMNFRRRRRLMELLSEKSPSSQETHDSPFCLRKQGHDNRKSASFMSVSPSKEIKVASAARRSSMSSCGSGGYFSSSPTLSSSPPVPCNPKSVLKRPVTSEELLTPGAPYARKTFTIVGDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKNTRWPNSSQNRAPWEPAST
SIO_010081: DEPTOR
subclass of: SO_0000673
so part of: DEPTOR
location: complement(join(804227..804286,817582..817686,820703..820773,825743..825877,827859..828044,854733..854911,883420..883543,884678..884856,934034..934122))
location: region:804227-934122:-1
so has part: feature:934034-934122:-1:exon
so has part: feature:884678-884856:-1:exon
so has part: feature:883420-883543:-1:exon
so has part: feature:854733-854911:-1:exon
so has part: feature:827859-828044:-1:exon
so has part: feature:825743-825877:-1:exon
so has part: feature:820703-820773:-1:exon
so has part: feature:817582-817686:-1:exon
so has part: feature:804227-804286:-1:exon

XP_017913634.1
type: Protein
SIO_000068: ncbiprotein

position:804227:-1
position: 804227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:934034-934122:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:884678-884856:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:883420-883543:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:854733-854911:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:827859-828044:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:825743-825877:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:820703-820773:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:817582-817686:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:804227-804286:-1:exon

DSCC1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: DSCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 944666..957448
location: region:944666-957448:1
so has part: feature:944666-957448:1:exon
subclass of: SO_0000010

102176904
type: Gene
SIO_000068: ncbigene

position:944666:1
position: 944666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:957448:1
position: 957448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944666-957448:1:exon

DSCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DSCC1
product: DNA replication and sister chromatid cohesion 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 11 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_018058147.1
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(944666..944913,947185..947353,949792..949926,951332..951422,953559..953697,954193..954245,954458..954612,955749..955897,956962..957448)
location: region:944666-957448:1
so has part: feature:944666-944913:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:949792-949926:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954458-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957448:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:944666-944913:1:exon

position:944913:1
position: 944913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

position:947185:1
position: 947185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:947353:1
position: 947353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:949792-949926:1:exon

position:949792:1
position: 949792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:949926:1
position: 949926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:951332-951422:1:exon

position:951332:1
position: 951332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:951422:1
position: 951422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:953559-953697:1:exon

position:953559:1
position: 953559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:953697:1
position: 953697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:954193-954245:1:exon

position:954193:1
position: 954193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:954245:1
position: 954245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:954458-954612:1:exon

position:954458:1
position: 954458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:954612:1
position: 954612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:955749-955897:1:exon

position:955749:1
position: 955749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:955897:1
position: 955897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:956962-957448:1:exon

position:956962:1
position: 956962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DSCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DSCC1
product: DNA replication and sister chromatid cohesion 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_018058148.1
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(944666..944913,947185..947353,949792..949926,951332..951422,953559..953697,954193..954245,954485..954612,955749..955897,956962..957448)
location: region:944666-957448:1
so has part: feature:944666-944913:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:949792-949926:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954485-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957448:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:944666-944913:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:949792-949926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:954485-954612:1:exon

position:954485:1
position: 954485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:956962-957448:1:exon

DSCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DSCC1
product: DNA replication and sister chromatid cohesion 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_018058149.1
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(944666..944913,947185..947353,951332..951422,953559..953697,954193..954245,954458..954612,955749..955897,956962..957442)
location: region:944666-957442:1
so has part: feature:944666-944913:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954458-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957442:1:exon

position:957442:1
position: 957442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944666-944913:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954458-954612:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:956962-957442:1:exon

DSCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DSCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sister chromatid cohesion protein DCC1 isoform X1
translation: MERTRAEVDATLQTAKLDAAELLPAAHCLRFGPAAAGDVCLLELEPALCGRLQAGHSLVIRGDKDEQAVLCSEDKTYDLKVADTSNMLLFIPGCKIPEQLKMEETHSNIIHTEIFGFSNNYWELRRCRPKLKKLKKLLMENTYEGPDSEKEKDSSHLKYTTGDLLDQIQASEEEIMTQLQVLNACEIGGYWRILEFDYEMKLLNHITQLVDSESWSFSKVPLNTCLQELGPLEPEEMIEHCLRCYGKKYTEEGEVYFELSADKICRATAQMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLQGLALVDRQSRPEIIFLLKVEDLPEGDQERFSSLFSLREKWTEEDIAPYIQDLCGEKQTVGALLTKYARSSMRNGVKVYNSRRPIS
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(944744..944913,947185..947353,949792..949926,951332..951422,953559..953697,954193..954245,954458..954612,955749..955897,956962..957070)
location: region:944744-957070:1
so has part: feature:944744-944913:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:949792-949926:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954458-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957070:1:exon

XP_017913636.1
type: Protein
SIO_000068: ncbiprotein

position:944744:1
position: 944744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:957070:1
position: 957070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:944744-944913:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:949792-949926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:954458-954612:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:956962-957070:1:exon

DSCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DSCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sister chromatid cohesion protein DCC1 isoform X2
translation: MERTRAEVDATLQTAKLDAAELLPAAHCLRFGPAAAGDVCLLELEPALCGRLQAGHSLVIRGDKDEQAVLCSEDKTYDLKVADTSNMLLFIPGCKIPEQLKMEETHSNIIHTEIFGFSNNYWELRRCRPKLKKLKKLLMENTYEGPDSEKEKDSSHLKYTTGDLLDQIQASEEEIMTQLQVLNACEIGGYWRILEFDYEMKLLNHITQLVDSESWSFSKVPLNTCLQELGPLEPEEMIEHCLRCYGKKYTEEDKICRATAQMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLQGLALVDRQSRPEIIFLLKVEDLPEGDQERFSSLFSLREKWTEEDIAPYIQDLCGEKQTVGALLTKYARSSMRNGVKVYNSRRPIS
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(944744..944913,947185..947353,949792..949926,951332..951422,953559..953697,954193..954245,954485..954612,955749..955897,956962..957070)
location: region:944744-957070:1
so has part: feature:944744-944913:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:949792-949926:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954485-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957070:1:exon

XP_017913637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:944744-944913:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:949792-949926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:954485-954612:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:956962-957070:1:exon

DSCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DSCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sister chromatid cohesion protein DCC1 isoform X3
translation: MERTRAEVDATLQTAKLDAAELLPAAHCLRFGPAAAGDVCLLELEPALCGRLQAGHSLVIRGDKDEQAVLCSEDKTYDLKVADTSNMLLFIPGCKIPEQLKMEETHSNIIHTEYTTGDLLDQIQASEEEIMTQLQVLNACEIGGYWRILEFDYEMKLLNHITQLVDSESWSFSKVPLNTCLQELGPLEPEEMIEHCLRCYGKKYTEEGEVYFELSADKICRATAQMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLQGLALVDRQSRPEIIFLLKVEDLPEGDQERFSSLFSLREKWTEEDIAPYIQDLCGEKQTVGALLTKYARSSMRNGVKVYNSRRPIS
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(944744..944913,947185..947353,951332..951422,953559..953697,954193..954245,954458..954612,955749..955897,956962..957070)
location: region:944744-957070:1
so has part: feature:944744-944913:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954458-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957070:1:exon

XP_017913638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:944744-944913:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954458-954612:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:956962-957070:1:exon

DSCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DSCC1
product: DNA replication and sister chromatid cohesion 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_018058150.1
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(945834..946127,947185..947353,949792..949926,951332..951422,953559..953697,954193..954245,954458..954612,955749..955897,956962..957442)
location: region:945834-957442:1
so has part: feature:945834-946127:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:949792-949926:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954458-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957442:1:exon

position:945834:1
position: 945834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:945834-946127:1:exon

position:946127:1
position: 946127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:949792-949926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:954458-954612:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:956962-957442:1:exon

DSCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DSCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sister chromatid cohesion protein DCC1 isoform X4
translation: MESLVIRGDKDEQAVLCSEDKTYDLKVADTSNMLLFIPGCKIPEQLKMEETHSNIIHTEIFGFSNNYWELRRCRPKLKKLKKLLMENTYEGPDSEKEKDSSHLKYTTGDLLDQIQASEEEIMTQLQVLNACEIGGYWRILEFDYEMKLLNHITQLVDSESWSFSKVPLNTCLQELGPLEPEEMIEHCLRCYGKKYTEEGEVYFELSADKICRATAQMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLQGLALVDRQSRPEIIFLLKVEDLPEGDQERFSSLFSLREKWTEEDIAPYIQDLCGEKQTVGALLTKYARSSMRNGVKVYNSRRPIS
SIO_010081: DSCC1
subclass of: SO_0000673
so part of: DSCC1
location: join(946120..946127,947185..947353,949792..949926,951332..951422,953559..953697,954193..954245,954458..954612,955749..955897,956962..957070)
location: region:946120-957070:1
so has part: feature:946120-946127:1:exon
so has part: feature:947185-947353:1:exon
so has part: feature:949792-949926:1:exon
so has part: feature:951332-951422:1:exon
so has part: feature:953559-953697:1:exon
so has part: feature:954193-954245:1:exon
so has part: feature:954458-954612:1:exon
so has part: feature:955749-955897:1:exon
so has part: feature:956962-957070:1:exon

XP_017913639.1
type: Protein
SIO_000068: ncbiprotein

position:946120:1
position: 946120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:946120-946127:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:947185-947353:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:949792-949926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:951332-951422:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:953559-953697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:954193-954245:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:954458-954612:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:955749-955897:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:956962-957070:1:exon

TAF2
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 962616..1055502
location: region:962616-1055502:1
so has part: feature:962616-1055502:1:exon
subclass of: SO_0000010

102177544
type: Gene
SIO_000068: ncbigene

position:962616:1
position: 962616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1055502:1
position: 1055502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:962616-1055502:1:exon

TAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TAF2
product: TATA-box binding protein associated factor 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_018058151.1
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962616..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1031924,1032401..1032506,1034863..1034985,1053971..1055502)
location: region:962616-1055502:1
so has part: feature:962616-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1031924:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1055502:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:962616-962988:1:exon

position:962988:1
position: 962988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

position:963606:1
position: 963606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:963660:1
position: 963660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

position:973140:1
position: 973140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:973300:1
position: 973300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

position:985979:1
position: 985979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:986097:1
position: 986097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

position:987833:1
position: 987833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:987974:1
position: 987974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

position:989421:1
position: 989421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:989652:1
position: 989652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

position:992211:1
position: 992211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:992395:1
position: 992395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

position:993384:1
position: 993384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:993497:1
position: 993497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

position:994516:1
position: 994516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:994615:1
position: 994615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

position:996372:1
position: 996372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:996457:1
position: 996457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

position:999600:1
position: 999600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:999735:1
position: 999735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

position:1002373:1
position: 1002373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1002527:1
position: 1002527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

position:1003182:1
position: 1003182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1003296:1
position: 1003296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

position:1003602:1
position: 1003602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1003711:1
position: 1003711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

position:1005296:1
position: 1005296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1005361:1
position: 1005361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

position:1006671:1
position: 1006671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1006923:1
position: 1006923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

position:1008800:1
position: 1008800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1008940:1
position: 1008940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

position:1011497:1
position: 1011497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1011607:1
position: 1011607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

position:1014379:1
position: 1014379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1014572:1
position: 1014572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

position:1015570:1
position: 1015570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1015709:1
position: 1015709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

position:1019643:1
position: 1019643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1019712:1
position: 1019712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

position:1022772:1
position: 1022772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1022881:1
position: 1022881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

position:1030236:1
position: 1030236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1030465:1
position: 1030465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1031769-1031924:1:exon

position:1031769:1
position: 1031769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1031924:1
position: 1031924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1032401-1032506:1:exon

position:1032401:1
position: 1032401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1032506:1
position: 1032506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1034863-1034985:1:exon

position:1034863:1
position: 1034863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1034985:1
position: 1034985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1053971-1055502:1:exon

position:1053971:1
position: 1053971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TAF2
product: TATA-box binding protein associated factor 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_018058152.1
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962616..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1031924,1032401..1032506,1034863..1034985,1053971..1054246,1054297..1055502)
location: region:962616-1055502:1
so has part: feature:962616-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1031924:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1054246:1:exon
so has part: feature:1054297-1055502:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:962616-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1031769-1031924:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1053971-1054246:1:exon

position:1054246:1
position: 1054246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1054297-1055502:1:exon

position:1054297:1
position: 1054297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TAF2
product: TATA-box binding protein associated factor 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 46 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_018058153.1
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962616..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1032401..1032506,1034863..1034985,1053971..1055502)
location: region:962616-1055502:1
so has part: feature:962616-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1055502:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:962616-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1053971-1055502:1:exon

TAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TAF2
product: TATA-box binding protein associated factor 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_018058154.1
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962616..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1032368)
location: region:962616-1032368:1
so has part: feature:962616-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1032368:1:exon

position:1032368:1
position: 1032368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:962616-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1031769-1032368:1:exon

TAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: TAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription initiation factor TFIID subunit 2 isoform X1
translation: MPPTGSDPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTSASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMAVLRRADSEQADFMWQYQLRYERDVVAQQEAIAALERFPTPASRLALTDVLEQEQCFYRVRMAACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPSLFRSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKSMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAIAGNQEAAVNPSSHAQLAGFQNPEDDHLAKEASCNMSAHQQGVKRKADTPLGSPLEPGQILEKNEDSSKVKLKIRFSSSQEEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPANSRSALTPQHSAGCDGTPTTKPQWNMELPRKGTGKEQPPLEMSVHPAAAAPLSVFGKEPASSRHGEHHHHHHREHKKRKKKHKHKHRHKHKRDGRERGRAPLAFPSPAGGRSARSPPLSD
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962906..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1031924,1032401..1032506,1034863..1034985,1053971..1054233)
location: region:962906-1054233:1
so has part: feature:962906-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1031924:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1054233:1:exon

XP_017913640.1
type: Protein
SIO_000068: ncbiprotein

position:962906:1
position: 962906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1054233:1
position: 1054233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:962906-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1031769-1031924:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1053971-1054233:1:exon

TAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: TAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription initiation factor TFIID subunit 2 isoform X1
translation: MPPTGSDPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTSASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMAVLRRADSEQADFMWQYQLRYERDVVAQQEAIAALERFPTPASRLALTDVLEQEQCFYRVRMAACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPSLFRSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKSMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAIAGNQEAAVNPSSHAQLAGFQNPEDDHLAKEASCNMSAHQQGVKRKADTPLGSPLEPGQILEKNEDSSKVKLKIRFSSSQEEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPANSRSALTPQHSAGCDGTPTTKPQWNMELPRKGTGKEQPPLEMSVHPAAAAPLSVFGKEPASSRHGEHHHHHHREHKKRKKKHKHKHRHKHKRDGRERGRAPLAFPSPAGGRSARSPPLSD
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962906..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1031924,1032401..1032506,1034863..1034985,1053971..1054233)
location: region:962906-1054233:1
so has part: feature:962906-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1031924:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1054233:1:exon

XP_017913641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:962906-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1031769-1031924:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1053971-1054233:1:exon

TAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: TAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription initiation factor TFIID subunit 2 isoform X2
translation: MPPTGSDPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTSASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMAVLRRADSEQADFMWQYQLRYERDVVAQQEAIAALERFPTPASRLALTDVLEQEQCFYRVRMAACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPSLFRSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKSMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAIAGNQEAAVNPSSHAQLAGFQNPFSSSQEEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPANSRSALTPQHSAGCDGTPTTKPQWNMELPRKGTGKEQPPLEMSVHPAAAAPLSVFGKEPASSRHGEHHHHHHREHKKRKKKHKHKHRHKHKRDGRERGRAPLAFPSPAGGRSARSPPLSD
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962906..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1032401..1032506,1034863..1034985,1053971..1054233)
location: region:962906-1054233:1
so has part: feature:962906-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1054233:1:exon

XP_017913642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:962906-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1053971-1054233:1:exon

TAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: TAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription initiation factor TFIID subunit 2 isoform X3
translation: MPPTGSDPARMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIKLNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCIKVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPCVDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYMLTIPTSASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMAVLRRADSEQADFMWQYQLRYERDVVAQQEAIAALERFPTPASRLALTDVLEQEQCFYRVRMAACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPSLFRSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKSMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAIAGNQEAAVNPSSHAQLAGFQNPEDDHLAKEASCNMSAHQQGVKRKADTPLGSPLEPGQILEKNEDSSKVKLKIRVRHTGYTCMSSVGRSPSLPPCDYSQWLSLRRNRWDSLSRKRTHTSI
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(962906..962988,963606..963660,973140..973300,985979..986097,987833..987974,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1032065)
location: region:962906-1032065:1
so has part: feature:962906-962988:1:exon
so has part: feature:963606-963660:1:exon
so has part: feature:973140-973300:1:exon
so has part: feature:985979-986097:1:exon
so has part: feature:987833-987974:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1032065:1:exon

XP_017913643.1
type: Protein
SIO_000068: ncbiprotein

position:1032065:1
position: 1032065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:962906-962988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:963606-963660:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:973140-973300:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:985979-986097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987833-987974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1031769-1032065:1:exon

TAF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TAF2
product: TATA-box binding protein associated factor 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_018058155.1
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(987862..987952,989421..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1031924,1032401..1032506,1034863..1034985,1053971..1055502)
location: region:987862-1055502:1
so has part: feature:987862-987952:1:exon
so has part: feature:989421-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1031924:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1055502:1:exon

position:987862:1
position: 987862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:987862-987952:1:exon

position:987952:1
position: 987952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:989421-989652:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1031769-1031924:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1053971-1055502:1:exon

TAF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: TAF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription initiation factor TFIID subunit 2 isoform X4
translation: MVAVSNGDLVETVYTHDMRKKTFHYMLTIPTSASNISLAIGPFEILVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYRHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTSGFLKSISNVSGKDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMAVLRRADSEQADFMWQYQLRYERDVVAQQEAIAALERFPTPASRLALTDVLEQEQCFYRVRMAACFCLAKIANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDPSLFRSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQNDPVPYVRHKILNMLTKNPPFTKSMESPLCNEALVDQLWKLMNSGTSHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAIAGNQEAAVNPSSHAQLAGFQNPEDDHLAKEASCNMSAHQQGVKRKADTPLGSPLEPGQILEKNEDSSKVKLKIRFSSSQEEEEIDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPANSRSALTPQHSAGCDGTPTTKPQWNMELPRKGTGKEQPPLEMSVHPAAAAPLSVFGKEPASSRHGEHHHHHHREHKKRKKKHKHKHRHKHKRDGRERGRAPLAFPSPAGGRSARSPPLSD
SIO_010081: TAF2
subclass of: SO_0000673
so part of: TAF2
location: join(989494..989652,992211..992395,993384..993497,994516..994615,996372..996457,999600..999735,1002373..1002527,1003182..1003296,1003602..1003711,1005296..1005361,1006671..1006923,1008800..1008940,1011497..1011607,1014379..1014572,1015570..1015709,1019643..1019712,1022772..1022881,1030236..1030465,1031769..1031924,1032401..1032506,1034863..1034985,1053971..1054233)
location: region:989494-1054233:1
so has part: feature:989494-989652:1:exon
so has part: feature:992211-992395:1:exon
so has part: feature:993384-993497:1:exon
so has part: feature:994516-994615:1:exon
so has part: feature:996372-996457:1:exon
so has part: feature:999600-999735:1:exon
so has part: feature:1002373-1002527:1:exon
so has part: feature:1003182-1003296:1:exon
so has part: feature:1003602-1003711:1:exon
so has part: feature:1005296-1005361:1:exon
so has part: feature:1006671-1006923:1:exon
so has part: feature:1008800-1008940:1:exon
so has part: feature:1011497-1011607:1:exon
so has part: feature:1014379-1014572:1:exon
so has part: feature:1015570-1015709:1:exon
so has part: feature:1019643-1019712:1:exon
so has part: feature:1022772-1022881:1:exon
so has part: feature:1030236-1030465:1:exon
so has part: feature:1031769-1031924:1:exon
so has part: feature:1032401-1032506:1:exon
so has part: feature:1034863-1034985:1:exon
so has part: feature:1053971-1054233:1:exon

XP_017913644.1
type: Protein
SIO_000068: ncbiprotein

position:989494:1
position: 989494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:989494-989652:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:992211-992395:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:993384-993497:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:994516-994615:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:996372-996457:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:999600-999735:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1002373-1002527:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1003182-1003296:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1003602-1003711:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1005296-1005361:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1006671-1006923:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1008800-1008940:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1011497-1011607:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1014379-1014572:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1015570-1015709:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1019643-1019712:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1022772-1022881:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1030236-1030465:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1031769-1031924:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1032401-1032506:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1034863-1034985:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1053971-1054233:1:exon

LOC102176344
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102176344
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1111135..1114919)
location: region:1111135-1114919:-1
so has part: feature:1111135-1114919:-1:exon
subclass of: SO_0000011

102176344
type: Gene
SIO_000068: ncbigene

position:1111135:-1
position: 1111135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1114919:-1
position: 1114919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1111135-1114919:-1:exon

LOC102176344
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC102176344
product: uncharacterized LOC102176344, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_001296514.2
SIO_010081: LOC102176344
subclass of: SO_0000673
so part of: LOC102176344
location: complement(join(1111135..1112972,1113284..1113408,1113512..1113591,1114609..1114919))
location: region:1111135-1114919:-1
so has part: feature:1114609-1114919:-1:exon
so has part: feature:1113512-1113591:-1:exon
so has part: feature:1113284-1113408:-1:exon
so has part: feature:1111135-1112972:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1114609-1114919:-1:exon

position:1114609:-1
position: 1114609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1113512-1113591:-1:exon

position:1113512:-1
position: 1113512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1113591:-1
position: 1113591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1113284-1113408:-1:exon

position:1113284:-1
position: 1113284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1113408:-1
position: 1113408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1111135-1112972:-1:exon

position:1112972:-1
position: 1112972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102176344
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC102176344
product: uncharacterized LOC102176344, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_001919113.1
SIO_010081: LOC102176344
subclass of: SO_0000673
so part of: LOC102176344
location: complement(join(1111135..1112972,1113284..1113408,1113512..1113591,1114572..1114641))
location: region:1111135-1114641:-1
so has part: feature:1114572-1114641:-1:exon
so has part: feature:1113512-1113591:-1:exon
so has part: feature:1113284-1113408:-1:exon
so has part: feature:1111135-1112972:-1:exon

position:1114641:-1
position: 1114641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1114572-1114641:-1:exon

position:1114572:-1
position: 1114572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1113512-1113591:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113284-1113408:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1111135-1112972:-1:exon

LOC102176344
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC102176344
product: uncharacterized LOC102176344, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_001919114.1
SIO_010081: LOC102176344
subclass of: SO_0000673
so part of: LOC102176344
location: complement(join(1111135..1112972,1113284..1113408,1113512..1113591,1114365..1114466))
location: region:1111135-1114466:-1
so has part: feature:1114365-1114466:-1:exon
so has part: feature:1113512-1113591:-1:exon
so has part: feature:1113284-1113408:-1:exon
so has part: feature:1111135-1112972:-1:exon

position:1114466:-1
position: 1114466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1114365-1114466:-1:exon

position:1114365:-1
position: 1114365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1113512-1113591:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1113284-1113408:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1111135-1112972:-1:exon

LOC102176344
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC102176344
product: uncharacterized LOC102176344, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XR_001919112.1
SIO_010081: LOC102176344
subclass of: SO_0000673
so part of: LOC102176344
location: complement(join(1111135..1112972,1113284..1113408,1113512..1113711))
location: region:1111135-1113711:-1
so has part: feature:1113512-1113711:-1:exon
so has part: feature:1113284-1113408:-1:exon
so has part: feature:1111135-1112972:-1:exon

position:1113711:-1
position: 1113711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1113512-1113711:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1113284-1113408:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1111135-1112972:-1:exon

ENPP2
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: ENPP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1150723..1242654
location: region:1150723-1242654:1
so has part: feature:1150723-1242654:1:exon
subclass of: SO_0000010

102176626
type: Gene
SIO_000068: ncbigene

position:1150723:1
position: 1150723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1242654:1
position: 1242654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1150723-1242654:1:exon

ENPP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: ENPP2
product: ectonucleotide pyrophosphatase/phosphodiesterase 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 ESTs, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_018058157.1
SIO_010081: ENPP2
subclass of: SO_0000673
so part of: ENPP2
location: join(1150723..1150959,1151161..1151263,1162693..1162848,1170341..1170465,1173436..1173496,1175862..1175959,1176161..1176240,1177007..1177126,1186595..1186650,1191660..1191725,1192974..1193046,1197571..1197723,1199906..1200014,1203038..1203163,1206773..1206804,1207523..1207650,1209273..1209360,1209525..1209612,1210716..1210900,1215079..1215130,1227689..1227825,1228946..1229081,1229736..1229813,1233293..1233425,1234858..1235014,1242041..1242654)
location: region:1150723-1242654:1
so has part: feature:1150723-1150959:1:exon
so has part: feature:1151161-1151263:1:exon
so has part: feature:1162693-1162848:1:exon
so has part: feature:1170341-1170465:1:exon
so has part: feature:1173436-1173496:1:exon
so has part: feature:1175862-1175959:1:exon
so has part: feature:1176161-1176240:1:exon
so has part: feature:1177007-1177126:1:exon
so has part: feature:1186595-1186650:1:exon
so has part: feature:1191660-1191725:1:exon
so has part: feature:1192974-1193046:1:exon
so has part: feature:1197571-1197723:1:exon
so has part: feature:1199906-1200014:1:exon
so has part: feature:1203038-1203163:1:exon
so has part: feature:1206773-1206804:1:exon
so has part: feature:1207523-1207650:1:exon
so has part: feature:1209273-1209360:1:exon
so has part: feature:1209525-1209612:1:exon
so has part: feature:1210716-1210900:1:exon
so has part: feature:1215079-1215130:1:exon
so has part: feature:1227689-1227825:1:exon
so has part: feature:1228946-1229081:1:exon
so has part: feature:1229736-1229813:1:exon
so has part: feature:1233293-1233425:1:exon
so has part: feature:1234858-1235014:1:exon
so has part: feature:1242041-1242654:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1150723-1150959:1:exon

position:1150959:1
position: 1150959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1151161-1151263:1:exon

position:1151161:1
position: 1151161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1151263:1
position: 1151263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1162693-1162848:1:exon

position:1162693:1
position: 1162693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1162848:1
position: 1162848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1170341-1170465:1:exon

position:1170341:1
position: 1170341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1170465:1
position: 1170465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1173436-1173496:1:exon

position:1173436:1
position: 1173436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1173496:1
position: 1173496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1175862-1175959:1:exon

position:1175862:1
position: 1175862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1175959:1
position: 1175959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1176161-1176240:1:exon

position:1176161:1
position: 1176161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1176240:1
position: 1176240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1177007-1177126:1:exon

position:1177007:1
position: 1177007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1177126:1
position: 1177126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1186595-1186650:1:exon

position:1186595:1
position: 1186595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186650:1
position: 1186650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1191660-1191725:1:exon

position:1191660:1
position: 1191660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1191725:1
position: 1191725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1192974-1193046:1:exon

position:1192974:1
position: 1192974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1193046:1
position: 1193046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1197571-1197723:1:exon

position:1197571:1
position: 1197571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1197723:1
position: 1197723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1199906-1200014:1:exon

position:1199906:1
position: 1199906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1200014:1
position: 1200014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1203038-1203163:1:exon

position:1203038:1
position: 1203038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1203163:1
position: 1203163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1206773-1206804:1:exon

position:1206773:1
position: 1206773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1206804:1
position: 1206804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1207523-1207650:1:exon

position:1207523:1
position: 1207523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1207650:1
position: 1207650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1209273-1209360:1:exon

position:1209273:1
position: 1209273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1209360:1
position: 1209360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1209525-1209612:1:exon

position:1209525:1
position: 1209525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1209612:1
position: 1209612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1210716-1210900:1:exon

position:1210716:1
position: 1210716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1210900:1
position: 1210900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1215079-1215130:1:exon

position:1215079:1
position: 1215079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1215130:1
position: 1215130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1227689-1227825:1:exon

position:1227689:1
position: 1227689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1227825:1
position: 1227825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1228946-1229081:1:exon

position:1228946:1
position: 1228946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1229081:1
position: 1229081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1229736-1229813:1:exon

position:1229736:1
position: 1229736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1229813:1
position: 1229813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1233293-1233425:1:exon

position:1233293:1
position: 1233293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1233425:1
position: 1233425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1234858-1235014:1:exon

position:1234858:1
position: 1234858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1235014:1
position: 1235014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1242041-1242654:1:exon

position:1242041:1
position: 1242041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ENPP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: ENPP2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ectonucleotide pyrophosphatase/phosphodiesterase family member 2
translation: MARRSSCQLHQVISLFTFAVGVNICLGFTANRIKRAEGWDEGPPTVLSDSPSINISGSCKGRCFELQEAGPPDCRCDNLCKSYSSCCLDFDELCLKTAGGWECTKDRCGEVRNEDHACHCSEDCXARGDCCTNYQVVCKGESHWVDDDCEEIKTPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHSPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDAHFNLRGREKFNHRWWGGQPLWITAAKQGVSAGTFFWPVVIPHERRILTILQWLTLPDHERPSVYAFYSEQPDFSGHKYGPFGPEERSYGSPFTPAKRPKRKVTPKRRQERPVTPPKKRRKVHRMDHYAAEARQDKMTNPLRDIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDIILVPGTLGRIRPKFNNHAKYDPKVIIANLTCKKPDQHFKPYLKQHLPKRLHYANNRRIEDVHLLVERRWHVARKPLEVYKKPSGKCFFQGDHGFDNKANSMQTVFVGYGPTFKYKTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNIFRPTMPEEVTRPNYPGVMYLQSDFDLGCTCDDKAEPKNKLDELNKRLHIKESTEERHLLYGRPAVLYRTRYDILYHTDFESGYSEIFLMPLWTSYTVSKQADVSDIAAHLTNCVRPDVRISPSFSQSCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRIWNYFQRVLVKKYASERNGVNVISGPIFDYDYDGLHDTQDKIKQYVEGSSVPVPTHYYSILTSCLDFTQPADRCDGPLSVSAFVLPHRPDNDESCNSSEDESKWVEELLKMHTARVRDIEHLTSLDFFRKTSRSYPEILTLKTYLQTYESEI
SIO_010081: ENPP2
subclass of: SO_0000673
so part of: ENPP2
location: join(1150927..1150959,1151161..1151263,1162693..1162848,1170341..1170465,1173436..1173496,1175862..1175959,1176161..1176240,1177007..1177126,1186595..1186650,1191660..1191725,1192974..1193046,1197571..1197723,1199906..1200014,1203038..1203163,1206773..1206804,1207523..1207650,1209273..1209360,1209525..1209612,1210716..1210900,1215079..1215130,1227689..1227825,1228946..1229081,1229736..1229813,1233293..1233425,1234858..1235014,1242041..1242211)
location: region:1150927-1242211:1
so has part: feature:1150927-1150959:1:exon
so has part: feature:1151161-1151263:1:exon
so has part: feature:1162693-1162848:1:exon
so has part: feature:1170341-1170465:1:exon
so has part: feature:1173436-1173496:1:exon
so has part: feature:1175862-1175959:1:exon
so has part: feature:1176161-1176240:1:exon
so has part: feature:1177007-1177126:1:exon
so has part: feature:1186595-1186650:1:exon
so has part: feature:1191660-1191725:1:exon
so has part: feature:1192974-1193046:1:exon
so has part: feature:1197571-1197723:1:exon
so has part: feature:1199906-1200014:1:exon
so has part: feature:1203038-1203163:1:exon
so has part: feature:1206773-1206804:1:exon
so has part: feature:1207523-1207650:1:exon
so has part: feature:1209273-1209360:1:exon
so has part: feature:1209525-1209612:1:exon
so has part: feature:1210716-1210900:1:exon
so has part: feature:1215079-1215130:1:exon
so has part: feature:1227689-1227825:1:exon
so has part: feature:1228946-1229081:1:exon
so has part: feature:1229736-1229813:1:exon
so has part: feature:1233293-1233425:1:exon
so has part: feature:1234858-1235014:1:exon
so has part: feature:1242041-1242211:1:exon

XP_017913646.1
type: Protein
SIO_000068: ncbiprotein

position:1150927:1
position: 1150927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1242211:1
position: 1242211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1150927-1150959:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1151161-1151263:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1162693-1162848:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1170341-1170465:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1173436-1173496:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1175862-1175959:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1176161-1176240:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1177007-1177126:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1186595-1186650:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1191660-1191725:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1192974-1193046:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1197571-1197723:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1199906-1200014:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1203038-1203163:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1206773-1206804:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1207523-1207650:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1209273-1209360:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1209525-1209612:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1210716-1210900:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1215079-1215130:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1227689-1227825:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1228946-1229081:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1229736-1229813:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1233293-1233425:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1234858-1235014:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1242041-1242211:1:exon

TRNAW-CCA
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TRNAW-CCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1157584..1157655)
location: region:1157584-1157655:-1
so has part: feature:1157584-1157655:-1:exon
subclass of: SO_0000663

108637561
type: Gene
SIO_000068: ncbigene

position:1157584:-1
position: 1157584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1157655:-1
position: 1157655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1157584-1157655:-1:exon

TRNAW-CCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9925
gene: TRNAW-CCA
product: tRNA-Trp
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA tryptophan (anticodon CCA); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1157620..1157622),aa:Trp, seq:cca)
SIO_010081: TRNAW-CCA
subclass of: SO_0000673
so part of: TRNAW-CCA
location: complement(1157584..1157655)
location: region:1157584-1157655:-1
so has part: feature:1157584-1157655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1157584-1157655:-1:exon

IMPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1300934..1327291)
location: region:1300934-1327291:-1
so has part: feature:1300934-1327291:-1:exon
subclass of: SO_0000010

102175872
type: Gene
SIO_000068: ncbigene

position:1300934:-1
position: 1300934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1327291:-1
position: 1327291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1300934-1327291:-1:exon

IMPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: IMPA1
product: inositol monophosphatase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 68 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_005689279.3
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: complement(join(1300934..1302508,1303546..1303697,1312059..1312167,1315194..1315302,1317478..1317523,1318753..1318857,1320724..1320857,1321229..1321291,1327188..1327291))
location: region:1300934-1327291:-1
so has part: feature:1327188-1327291:-1:exon
so has part: feature:1321229-1321291:-1:exon
so has part: feature:1320724-1320857:-1:exon
so has part: feature:1318753-1318857:-1:exon
so has part: feature:1317478-1317523:-1:exon
so has part: feature:1315194-1315302:-1:exon
so has part: feature:1312059-1312167:-1:exon
so has part: feature:1303546-1303697:-1:exon
so has part: feature:1300934-1302508:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1327188-1327291:-1:exon

position:1327188:-1
position: 1327188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1321229-1321291:-1:exon

position:1321229:-1
position: 1321229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1321291:-1
position: 1321291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1320724-1320857:-1:exon

position:1320724:-1
position: 1320724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1320857:-1
position: 1320857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1318753-1318857:-1:exon

position:1318753:-1
position: 1318753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1318857:-1
position: 1318857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1317478-1317523:-1:exon

position:1317478:-1
position: 1317478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1317523:-1
position: 1317523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1315194-1315302:-1:exon

position:1315194:-1
position: 1315194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1315302:-1
position: 1315302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1312059-1312167:-1:exon

position:1312059:-1
position: 1312059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1312167:-1
position: 1312167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1303546-1303697:-1:exon

position:1303546:-1
position: 1303546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1303697:-1
position: 1303697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1300934-1302508:-1:exon

position:1302508:-1
position: 1302508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IMPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: IMPA1
product: inositol monophosphatase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 78 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_018058158.1
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: complement(join(1300934..1302508,1303546..1303697,1312059..1312167,1315194..1315302,1317478..1317523,1318753..1318857,1320724..1320857,1321229..1321291,1324539..1324638))
location: region:1300934-1324638:-1
so has part: feature:1324539-1324638:-1:exon
so has part: feature:1321229-1321291:-1:exon
so has part: feature:1320724-1320857:-1:exon
so has part: feature:1318753-1318857:-1:exon
so has part: feature:1317478-1317523:-1:exon
so has part: feature:1315194-1315302:-1:exon
so has part: feature:1312059-1312167:-1:exon
so has part: feature:1303546-1303697:-1:exon
so has part: feature:1300934-1302508:-1:exon

position:1324638:-1
position: 1324638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1324539-1324638:-1:exon

position:1324539:-1
position: 1324539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1321229-1321291:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1320724-1320857:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1318753-1318857:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1317478-1317523:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1315194-1315302:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1312059-1312167:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1303546-1303697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1300934-1302508:-1:exon

IMPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol monophosphatase 1 isoform X1
translation: MMADPWQECMDYAVTLAGQAGEVVREALKNEMNIMVKSSPADLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTGRKGKGAFCNGQKLQVSRQEDVTKSLLVTELGSSRTPETVRIILSNMERLLCLPIHGIRGVGTAALNMCLVAAGAADAYYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPFDLMSRRVIASSSKTLAERIAKEIQIIPLQRDDED
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: complement(join(1302393..1302508,1303546..1303697,1312059..1312167,1315194..1315302,1317478..1317523,1318753..1318857,1320724..1320857,1321229..1321291,1327188..1327190))
location: region:1302393-1327190:-1
so has part: feature:1327188-1327190:-1:exon
so has part: feature:1321229-1321291:-1:exon
so has part: feature:1320724-1320857:-1:exon
so has part: feature:1318753-1318857:-1:exon
so has part: feature:1317478-1317523:-1:exon
so has part: feature:1315194-1315302:-1:exon
so has part: feature:1312059-1312167:-1:exon
so has part: feature:1303546-1303697:-1:exon
so has part: feature:1302393-1302508:-1:exon

XP_005689336.1
type: Protein
SIO_000068: ncbiprotein

position:1302393:-1
position: 1302393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1327190:-1
position: 1327190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1327188-1327190:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1321229-1321291:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1320724-1320857:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1318753-1318857:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1317478-1317523:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1315194-1315302:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1312059-1312167:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1303546-1303697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1302393-1302508:-1:exon

IMPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol monophosphatase 1 isoform X2
translation: MADPWQECMDYAVTLAGQAGEVVREALKNEMNIMVKSSPADLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTGRKGKGAFCNGQKLQVSRQEDVTKSLLVTELGSSRTPETVRIILSNMERLLCLPIHGIRGVGTAALNMCLVAAGAADAYYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPFDLMSRRVIASSSKTLAERIAKEIQIIPLQRDDED
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: complement(join(1302393..1302508,1303546..1303697,1312059..1312167,1315194..1315302,1317478..1317523,1318753..1318857,1320724..1320857,1321229..1321291))
location: region:1302393-1321291:-1
so has part: feature:1321229-1321291:-1:exon
so has part: feature:1320724-1320857:-1:exon
so has part: feature:1318753-1318857:-1:exon
so has part: feature:1317478-1317523:-1:exon
so has part: feature:1315194-1315302:-1:exon
so has part: feature:1312059-1312167:-1:exon
so has part: feature:1303546-1303697:-1:exon
so has part: feature:1302393-1302508:-1:exon

XP_017913647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1321229-1321291:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1320724-1320857:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1318753-1318857:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1317478-1317523:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1315194-1315302:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1312059-1312167:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1303546-1303697:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1302393-1302508:-1:exon

SLC10A5
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: SLC10A5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1327221..1334972)
location: region:1327221-1334972:-1
so has part: feature:1327221-1334972:-1:exon
subclass of: SO_0000010

102175597
type: Gene
SIO_000068: ncbigene

position:1327221:-1
position: 1327221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1334972:-1
position: 1334972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1327221-1334972:-1:exon

SLC10A5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SLC10A5
product: solute carrier family 10 member 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005689278.3
SIO_010081: SLC10A5
subclass of: SO_0000673
so part of: SLC10A5
location: complement(1327221..1334972)
location: region:1327221-1334972:-1
so has part: feature:1327221-1334972:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1327221-1334972:-1:exon

SLC10A5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SLC10A5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium/bile acid cotransporter 5
translation: MIRKLFIALLLSSVTLGEARKSFLSFLNMEKTEVLFFTKTEEAVVVRSTYRDKQPNSSYLLVQLGDDRILQVANVTKTLSDVTNFTINLVMGGDGETNLTVQLWDSEGRGQRLIEEIKNVRVSVLRQRHDSPSQAPDLLNRNILMLFLPMILLNKCAFGCKIEFQVFETVWKRPLPVVLGVVIQFFLMPFCGFLLTQILALPEAQAFGFIVTCTCPGGGGGYLFALLLEGDVTLAILMTCTSTFLALVTMPTNSYIYSRILGLSGTLHIPISKIMSTLLFILTPMSVGIAIKRRLPDKAKFLERIIRPLSFILMCIGICLTFSMGLVFLKAMNLGVLLLGVSVPALGLSFGYFFAKVSMLPLPVCKTVAIEGGVLNSFLALAIIQLSFSQSDADLASVAPFTVAMCSACEMLLILLFYKAKKRCVLNTEEKRMKNPPV
SIO_010081: SLC10A5
subclass of: SO_0000673
so part of: SLC10A5
location: complement(1332520..1333836)
location: region:1332520-1333836:-1
so has part: feature:1332520-1333836:-1:exon

XP_005689335.1
type: Protein
SIO_000068: ncbiprotein

position:1332520:-1
position: 1332520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1333836:-1
position: 1333836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1332520-1333836:-1:exon

ZFAND1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: ZFAND1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1335084..1359872)
location: region:1335084-1359872:-1
so has part: feature:1335084-1359872:-1:exon
subclass of: SO_0000010

102177256
type: Gene
SIO_000068: ncbigene

position:1335084:-1
position: 1335084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1359872:-1
position: 1359872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1335084-1359872:-1:exon

ZFAND1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: ZFAND1
product: zinc finger AN1-type containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_018058159.1
SIO_010081: ZFAND1
subclass of: SO_0000673
so part of: ZFAND1
location: complement(join(1335084..1337518,1337610..1337765,1349025..1349143,1350229..1350320,1350406..1350533,1355794..1355833,1356735..1356777,1359800..1359872))
location: region:1335084-1359872:-1
so has part: feature:1359800-1359872:-1:exon
so has part: feature:1356735-1356777:-1:exon
so has part: feature:1355794-1355833:-1:exon
so has part: feature:1350406-1350533:-1:exon
so has part: feature:1350229-1350320:-1:exon
so has part: feature:1349025-1349143:-1:exon
so has part: feature:1337610-1337765:-1:exon
so has part: feature:1335084-1337518:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1359800-1359872:-1:exon

position:1359800:-1
position: 1359800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1356735-1356777:-1:exon

position:1356735:-1
position: 1356735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1356777:-1
position: 1356777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1355794-1355833:-1:exon

position:1355794:-1
position: 1355794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1355833:-1
position: 1355833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1350406-1350533:-1:exon

position:1350406:-1
position: 1350406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1350533:-1
position: 1350533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1350229-1350320:-1:exon

position:1350229:-1
position: 1350229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1350320:-1
position: 1350320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1349025-1349143:-1:exon

position:1349025:-1
position: 1349025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1349143:-1
position: 1349143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1337610-1337765:-1:exon

position:1337610:-1
position: 1337610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1337765:-1
position: 1337765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1335084-1337518:-1:exon

position:1337518:-1
position: 1337518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZFAND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: ZFAND1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AN1-type zinc finger protein 1
translation: MAELDVGRHCQVERCRRLDFLPFVCDGCSGVFCLEHRSRESHSCPEVTVINERPESDTRTSHPCSFRDCAERGLVPVMCPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETSKRRKGAKNSETAAKVALMKLKMHAAGDKSLPQTERVYFQVFLPKGGKEKRRAMFFCRAWSIGRATDCAASLASLKNDNNRPTAKKLRLCHSVSGEALPLDHILETWIAKEDCPLYNGGNIILEYLSDEEQFLKNVDSYLE
SIO_010081: ZFAND1
subclass of: SO_0000673
so part of: ZFAND1
location: complement(join(1337348..1337518,1337610..1337765,1349025..1349143,1350229..1350320,1350406..1350533,1355794..1355833,1356735..1356777,1359800..1359854))
location: region:1337348-1359854:-1
so has part: feature:1359800-1359854:-1:exon
so has part: feature:1356735-1356777:-1:exon
so has part: feature:1355794-1355833:-1:exon
so has part: feature:1350406-1350533:-1:exon
so has part: feature:1350229-1350320:-1:exon
so has part: feature:1349025-1349143:-1:exon
so has part: feature:1337610-1337765:-1:exon
so has part: feature:1337348-1337518:-1:exon

XP_017913648.1
type: Protein
SIO_000068: ncbiprotein

position:1337348:-1
position: 1337348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1359854:-1
position: 1359854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1359800-1359854:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1356735-1356777:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1355794-1355833:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1350406-1350533:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1350229-1350320:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1349025-1349143:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1337610-1337765:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1337348-1337518:-1:exon

CHMP4C
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: CHMP4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1370100..1402576
location: region:1370100-1402576:1
so has part: feature:1370100-1402576:1:exon
subclass of: SO_0000010

102176978
type: Gene
SIO_000068: ncbigene

position:1370100:1
position: 1370100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1402576:1
position: 1402576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1370100-1402576:1:exon

CHMP4C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: CHMP4C
product: charged multivesicular body protein 4C
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 12 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_005689327.3
SIO_010081: CHMP4C
subclass of: SO_0000673
so part of: CHMP4C
location: join(1370100..1370449,1392788..1392965,1396819..1396933,1400051..1400213,1400772..1402576)
location: region:1370100-1402576:1
so has part: feature:1370100-1370449:1:exon
so has part: feature:1392788-1392965:1:exon
so has part: feature:1396819-1396933:1:exon
so has part: feature:1400051-1400213:1:exon
so has part: feature:1400772-1402576:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1370100-1370449:1:exon

position:1370449:1
position: 1370449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1392788-1392965:1:exon

position:1392788:1
position: 1392788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1392965:1
position: 1392965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1396819-1396933:1:exon

position:1396819:1
position: 1396819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1396933:1
position: 1396933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1400051-1400213:1:exon

position:1400051:1
position: 1400051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1400213:1
position: 1400213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1400772-1402576:1:exon

position:1400772:1
position: 1400772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CHMP4C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: CHMP4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: charged multivesicular body protein 4c
translation: MSKLGKFFKGGGSSKSRAAPSAQEALARLRETEEMLGKQQECLEGRIQRELSLARKHGTQNKRAALQALKRKKRLEKQLTQIDGTLSTIEFQREALENSYTNTEVLRNMGLAAKAMKAVHENMDLNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPNAPSSSLPAQPDRGSGRMPGASSAHRSRAASSRRTGREDDDIQHLAAWAT
SIO_010081: CHMP4C
subclass of: SO_0000673
so part of: CHMP4C
location: join(1370260..1370449,1392788..1392965,1396819..1396933,1400051..1400213,1400772..1400836)
location: region:1370260-1400836:1
so has part: feature:1370260-1370449:1:exon
so has part: feature:1392788-1392965:1:exon
so has part: feature:1396819-1396933:1:exon
so has part: feature:1400051-1400213:1:exon
so has part: feature:1400772-1400836:1:exon

XP_005689384.2
type: Protein
SIO_000068: ncbiprotein

position:1370260:1
position: 1370260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1400836:1
position: 1400836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1370260-1370449:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1392788-1392965:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1396819-1396933:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1400051-1400213:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1400772-1400836:1:exon

SNX16
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1427745..1461758)
location: region:1427745-1461758:-1
so has part: feature:1427745-1461758:-1:exon
subclass of: SO_0000010

102174761
type: Gene
SIO_000068: ncbigene

position:1427745:-1
position: 1427745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1461758:-1
position: 1461758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1427745-1461758:-1:exon

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SNX16
product: sorting nexin 16, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_018058162.1
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1427745..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458142,1461675..1461758))
location: region:1427745-1461758:-1
so has part: feature:1461675-1461758:-1:exon
so has part: feature:1457667-1458142:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1427745-1429106:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1461675-1461758:-1:exon

position:1461675:-1
position: 1461675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1457667-1458142:-1:exon

position:1457667:-1
position: 1457667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1458142:-1
position: 1458142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1451329-1451415:-1:exon

position:1451329:-1
position: 1451329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1451415:-1
position: 1451415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1443669-1443817:-1:exon

position:1443669:-1
position: 1443669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1443817:-1
position: 1443817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1434644-1434713:-1:exon

position:1434644:-1
position: 1434644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1434713:-1
position: 1434713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1430467-1430603:-1:exon

position:1430467:-1
position: 1430467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1430603:-1
position: 1430603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1429828-1429947:-1:exon

position:1429828:-1
position: 1429828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1429947:-1
position: 1429947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1427745-1429106:-1:exon

position:1429106:-1
position: 1429106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SNX16
product: sorting nexin 16, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_018058165.1
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1427745..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1457806,1457894..1458142,1461580..1461684))
location: region:1427745-1461684:-1
so has part: feature:1461580-1461684:-1:exon
so has part: feature:1457894-1458142:-1:exon
so has part: feature:1457667-1457806:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1427745-1429106:-1:exon

position:1461684:-1
position: 1461684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1461580-1461684:-1:exon

position:1461580:-1
position: 1461580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1457894-1458142:-1:exon

position:1457894:-1
position: 1457894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1457667-1457806:-1:exon

position:1457806:-1
position: 1457806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1427745-1429106:-1:exon

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SNX16
product: sorting nexin 16, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 17 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_018058161.1
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1427745..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458142,1461580..1461684))
location: region:1427745-1461684:-1
so has part: feature:1461580-1461684:-1:exon
so has part: feature:1457667-1458142:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1427745-1429106:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1461580-1461684:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1457667-1458142:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1427745-1429106:-1:exon

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SNX16
product: sorting nexin 16, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_018058163.1
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1427745..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458142,1461508..1461562))
location: region:1427745-1461562:-1
so has part: feature:1461508-1461562:-1:exon
so has part: feature:1457667-1458142:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1427745-1429106:-1:exon

position:1461562:-1
position: 1461562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1461508-1461562:-1:exon

position:1461508:-1
position: 1461508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1457667-1458142:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1427745-1429106:-1:exon

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: SNX16
product: sorting nexin 16, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_018058164.1
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1427745..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458142,1461369..1461390))
location: region:1427745-1461390:-1
so has part: feature:1461369-1461390:-1:exon
so has part: feature:1457667-1458142:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1427745-1429106:-1:exon

position:1461390:-1
position: 1461390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1461369-1461390:-1:exon

position:1461369:-1
position: 1461369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1457667-1458142:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1427745-1429106:-1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X2
translation: MATPYVPVPMPLGNSASSFATTRNQRSSSFGSISTSSNSSKGQLEDSNMGADSSIEYSARPRESEEQSPETVTLEDRPSTPIILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFRDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVRDFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLLIDTLENRIRTLSLKPEESLLTSGTDGRQTLKVEPSALEVDQGALDEESRADNKQYSSLSEPKSSISDIEVAEVAYHAED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1429013..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1457806,1457894..1458041))
location: region:1429013-1458041:-1
so has part: feature:1457894-1458041:-1:exon
so has part: feature:1457667-1457806:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1429013-1429106:-1:exon

XP_017913654.1
type: Protein
SIO_000068: ncbiprotein

position:1429013:-1
position: 1429013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1458041:-1
position: 1458041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1457894-1458041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1457667-1457806:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1429013-1429106:-1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X1
translation: MATPYVPVPMPLGNSASSFATTRNQRSSSFGSISTSSNSSKGQLEDSNMGNFKQTSVSDQMESTSSVCSSPLIRTKFTGADSSIEYSARPRESEEQSPETVTLEDRPSTPIILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFRDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVRDFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLLIDTLENRIRTLSLKPEESLLTSGTDGRQTLKVEPSALEVDQGALDEESRADNKQYSSLSEPKSSISDIEVAEVAYHAED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1429013..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458041))
location: region:1429013-1458041:-1
so has part: feature:1457667-1458041:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1429013-1429106:-1:exon

XP_017913650.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1457667-1458041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429013-1429106:-1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X1
translation: MATPYVPVPMPLGNSASSFATTRNQRSSSFGSISTSSNSSKGQLEDSNMGNFKQTSVSDQMESTSSVCSSPLIRTKFTGADSSIEYSARPRESEEQSPETVTLEDRPSTPIILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFRDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVRDFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLLIDTLENRIRTLSLKPEESLLTSGTDGRQTLKVEPSALEVDQGALDEESRADNKQYSSLSEPKSSISDIEVAEVAYHAED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1429013..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458041))
location: region:1429013-1458041:-1
so has part: feature:1457667-1458041:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1429013-1429106:-1:exon

XP_017913651.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1457667-1458041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429013-1429106:-1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X1
translation: MATPYVPVPMPLGNSASSFATTRNQRSSSFGSISTSSNSSKGQLEDSNMGNFKQTSVSDQMESTSSVCSSPLIRTKFTGADSSIEYSARPRESEEQSPETVTLEDRPSTPIILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFRDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVRDFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLLIDTLENRIRTLSLKPEESLLTSGTDGRQTLKVEPSALEVDQGALDEESRADNKQYSSLSEPKSSISDIEVAEVAYHAED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1429013..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458041))
location: region:1429013-1458041:-1
so has part: feature:1457667-1458041:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1429013-1429106:-1:exon

XP_017913652.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1457667-1458041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429013-1429106:-1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X1
translation: MATPYVPVPMPLGNSASSFATTRNQRSSSFGSISTSSNSSKGQLEDSNMGNFKQTSVSDQMESTSSVCSSPLIRTKFTGADSSIEYSARPRESEEQSPETVTLEDRPSTPIILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFRDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVRDFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLLIDTLENRIRTLSLKPEESLLTSGTDGRQTLKVEPSALEVDQGALDEESRADNKQYSSLSEPKSSISDIEVAEVAYHAED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: complement(join(1429013..1429106,1429828..1429947,1430467..1430603,1434644..1434713,1443669..1443817,1451329..1451415,1457667..1458041))
location: region:1429013-1458041:-1
so has part: feature:1457667-1458041:-1:exon
so has part: feature:1451329-1451415:-1:exon
so has part: feature:1443669-1443817:-1:exon
so has part: feature:1434644-1434713:-1:exon
so has part: feature:1430467-1430603:-1:exon
so has part: feature:1429828-1429947:-1:exon
so has part: feature:1429013-1429106:-1:exon

XP_017913653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1457667-1458041:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1451329-1451415:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1443669-1443817:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1434644-1434713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1430467-1430603:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1429828-1429947:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1429013-1429106:-1:exon

LOC106502871
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC106502871
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1458156..1580238
location: region:1458156-1580238:1
so has part: feature:1458156-1580238:1:exon
subclass of: SO_0000011

106502871
type: Gene
SIO_000068: ncbigene

position:1458156:1
position: 1458156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1580238:1
position: 1580238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1458156-1580238:1:exon

LOC106502871
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC106502871
product: uncharacterized LOC106502871
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_001296542.2
SIO_010081: LOC106502871
subclass of: SO_0000673
so part of: LOC106502871
location: join(1458156..1459469,1461659..1461866,1529285..1529467,1560087..1560145,1561683..1561818,1569924..1570481,1572558..1572660,1580190..1580238)
location: region:1458156-1580238:1
so has part: feature:1458156-1459469:1:exon
so has part: feature:1461659-1461866:1:exon
so has part: feature:1529285-1529467:1:exon
so has part: feature:1560087-1560145:1:exon
so has part: feature:1561683-1561818:1:exon
so has part: feature:1569924-1570481:1:exon
so has part: feature:1572558-1572660:1:exon
so has part: feature:1580190-1580238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1458156-1459469:1:exon

position:1459469:1
position: 1459469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1461659-1461866:1:exon

position:1461659:1
position: 1461659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1461866:1
position: 1461866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1529285-1529467:1:exon

position:1529285:1
position: 1529285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1529467:1
position: 1529467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1560087-1560145:1:exon

position:1560087:1
position: 1560087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1560145:1
position: 1560145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1561683-1561818:1:exon

position:1561683:1
position: 1561683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1561818:1
position: 1561818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1569924-1570481:1:exon

position:1569924:1
position: 1569924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1570481:1
position: 1570481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1572558-1572660:1:exon

position:1572558:1
position: 1572558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1572660:1
position: 1572660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1580190-1580238:1:exon

position:1580190:1
position: 1580190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC106502869
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC106502869
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1699168..1707602
location: region:1699168-1707602:1
so has part: feature:1699168-1707602:1:exon
subclass of: SO_0000011

106502869
type: Gene
SIO_000068: ncbigene

position:1699168:1
position: 1699168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1707602:1
position: 1707602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1699168-1707602:1:exon

LOC106502869
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC106502869
product: uncharacterized LOC106502869, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_001296540.2
SIO_010081: LOC106502869
subclass of: SO_0000673
so part of: LOC106502869
location: join(1699168..1699260,1699731..1699866,1707520..1707602)
location: region:1699168-1707602:1
so has part: feature:1699168-1699260:1:exon
so has part: feature:1699731-1699866:1:exon
so has part: feature:1707520-1707602:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1699168-1699260:1:exon

position:1699260:1
position: 1699260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1699731-1699866:1:exon

position:1699731:1
position: 1699731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1699866:1
position: 1699866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1707520-1707602:1:exon

position:1707520:1
position: 1707520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC106502869
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC106502869
product: uncharacterized LOC106502869, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_001296538.2
SIO_010081: LOC106502869
subclass of: SO_0000673
so part of: LOC106502869
location: join(1699168..1699260,1699731..1699866,1702271..1702735)
location: region:1699168-1702735:1
so has part: feature:1699168-1699260:1:exon
so has part: feature:1699731-1699866:1:exon
so has part: feature:1702271-1702735:1:exon

position:1702735:1
position: 1702735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1699168-1699260:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1699731-1699866:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1702271-1702735:1:exon

position:1702271:1
position: 1702271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102176440
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102176440
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3020882..3021541
location: region:3020882-3021541:1
so has part: feature:3020882-3021541:1:exon

102176440
type: Gene
SIO_000068: ncbigene

position:3020882:1
position: 3020882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3021541:1
position: 3021541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020882-3021541:1:exon

LOC102176440
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102176440
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC102176440
subclass of: SO_0000673
so part of: LOC102176440
location: 3020882..3021541
location: region:3020882-3021541:1
so has part: feature:3020882-3021541:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3020882-3021541:1:exon

RALYL
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3680414..4498266
location: region:3680414-4498266:1
so has part: feature:3680414-4498266:1:exon
subclass of: SO_0000010

102174135
type: Gene
SIO_000068: ncbigene

position:3680414:1
position: 3680414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4498266:1
position: 4498266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3680414-4498266:1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RALYL
product: RALY RNA binding protein-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_013969344.2
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(3680414..3680569,4039833..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461127,4497287..4498260)
location: region:3680414-4498260:1
so has part: feature:3680414-3680569:1:exon
so has part: feature:4039833-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461127:1:exon
so has part: feature:4497287-4498260:1:exon

position:4498260:1
position: 4498260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3680414-3680569:1:exon

position:3680569:1
position: 3680569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4039833-4040111:1:exon

position:4039833:1
position: 4039833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4040111:1
position: 4040111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4333622-4333697:1:exon

position:4333622:1
position: 4333622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4333697:1
position: 4333697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4364189-4364221:1:exon

position:4364189:1
position: 4364189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4364221:1
position: 4364221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4397797-4397844:1:exon

position:4397797:1
position: 4397797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4397844:1
position: 4397844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4409078-4409241:1:exon

position:4409078:1
position: 4409078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4409241:1
position: 4409241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4440564-4440677:1:exon

position:4440564:1
position: 4440564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4440677:1
position: 4440677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4460906-4461127:1:exon

position:4460906:1
position: 4460906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4461127:1
position: 4461127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4497287-4498260:1:exon

position:4497287:1
position: 4497287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RALYL
product: RALY RNA binding protein-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_005689272.2
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(3680480..3680569,4039833..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461078,4497287..4498266)
location: region:3680480-4498266:1
so has part: feature:3680480-3680569:1:exon
so has part: feature:4039833-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461078:1:exon
so has part: feature:4497287-4498266:1:exon

position:3680480:1
position: 3680480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3680480-3680569:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4039833-4040111:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4460906-4461078:1:exon

position:4461078:1
position: 4461078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4497287-4498266:1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RALYL
product: RALY RNA binding protein-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_018058166.1
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(3680496..3681481,4039833..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461127,4497287..4498260)
location: region:3680496-4498260:1
so has part: feature:3680496-3681481:1:exon
so has part: feature:4039833-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461127:1:exon
so has part: feature:4497287-4498260:1:exon

position:3680496:1
position: 3680496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3680496-3681481:1:exon

position:3681481:1
position: 3681481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4039833-4040111:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4460906-4461127:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4497287-4498260:1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RALYL
product: RALY RNA binding protein-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_018058167.1
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(3681507..3681768,4039833..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461127,4497287..4498260)
location: region:3681507-4498260:1
so has part: feature:3681507-3681768:1:exon
so has part: feature:4039833-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461127:1:exon
so has part: feature:4497287-4498260:1:exon

position:3681507:1
position: 3681507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3681507-3681768:1:exon

position:3681768:1
position: 3681768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4039833-4040111:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4460906-4461127:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4497287-4498260:1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X2
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPISALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRAAVTTTRRGKGVFSMKGGSRSAVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEASLELIQDECVSENADHSAEEPAEGAPDADGEELTDGVEEDFDEDGAHELFLQIK
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(4039856..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461078,4497287..4497304)
location: region:4039856-4497304:1
so has part: feature:4039856-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461078:1:exon
so has part: feature:4497287-4497304:1:exon

XP_005689329.1
type: Protein
SIO_000068: ncbiprotein

position:4039856:1
position: 4039856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4497304:1
position: 4497304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4039856-4040111:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4460906-4461078:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4497287-4497304:1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPISALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRAAVTTTRRGKGVFSMKGGSRSAVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEASLELIQDECVSENADHSAEEPAEGAPDADGEELTDGVEEDFDEDGAHELVGNSAGMSATRSF
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(4039856..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461120)
location: region:4039856-4461120:1
so has part: feature:4039856-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461120:1:exon

XP_017913655.1
type: Protein
SIO_000068: ncbiprotein

position:4461120:1
position: 4461120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4039856-4040111:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4460906-4461120:1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPISALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRAAVTTTRRGKGVFSMKGGSRSAVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEASLELIQDECVSENADHSAEEPAEGAPDADGEELTDGVEEDFDEDGAHELVGNSAGMSATRSF
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(4039856..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461120)
location: region:4039856-4461120:1
so has part: feature:4039856-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461120:1:exon

XP_017913656.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4039856-4040111:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4460906-4461120:1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPISALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRAAVTTTRRGKGVFSMKGGSRSAVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEASLELIQDECVSENADHSAEEPAEGAPDADGEELTDGVEEDFDEDGAHELVGNSAGMSATRSF
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: join(4039856..4040111,4333622..4333697,4364189..4364221,4397797..4397844,4409078..4409241,4440564..4440677,4460906..4461120)
location: region:4039856-4461120:1
so has part: feature:4039856-4040111:1:exon
so has part: feature:4333622-4333697:1:exon
so has part: feature:4364189-4364221:1:exon
so has part: feature:4397797-4397844:1:exon
so has part: feature:4409078-4409241:1:exon
so has part: feature:4440564-4440677:1:exon
so has part: feature:4460906-4461120:1:exon

XP_013824798.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4039856-4040111:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4333622-4333697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4364189-4364221:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4397797-4397844:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4409078-4409241:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4440564-4440677:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4460906-4461120:1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4315158..4315229)
location: region:4315158-4315229:-1
so has part: feature:4315158-4315229:-1:exon
subclass of: SO_0000663

108637562
type: Gene
SIO_000068: ncbigene

position:4315158:-1
position: 4315158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4315229:-1
position: 4315229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4315158-4315229:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9925
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA cysteine (anticodon GCA); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4315194..4315196),aa:Cys, seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(4315158..4315229)
location: region:4315158-4315229:-1
so has part: feature:4315158-4315229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4315158-4315229:-1:exon

LOC102175873
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102175873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4588943..4589571
location: region:4588943-4589571:1
so has part: feature:4588943-4589571:1:exon

102175873
type: Gene
SIO_000068: ncbigene

position:4588943:1
position: 4588943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4589571:1
position: 4589571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4588943-4589571:1:exon

LOC102175873
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102175873
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
pseudo: true
SIO_010081: LOC102175873
subclass of: SO_0000673
so part of: LOC102175873
location: 4588943..4589571
location: region:4588943-4589571:1
so has part: feature:4588943-4589571:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4588943-4589571:1:exon

LOC102173863
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102173863
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4632813..4649653
location: region:4632813-4649653:1
so has part: feature:4632813-4649653:1:exon
subclass of: SO_0000010

102173863
type: Gene
SIO_000068: ncbigene

position:4632813:1
position: 4632813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4649653:1
position: 4649653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4632813-4649653:1:exon

LOC102173863
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102173863
product: solute carrier family 7 member 13-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_005689271.3
SIO_010081: LOC102173863
subclass of: SO_0000673
so part of: LOC102173863
location: join(4632813..4633610,4635579..4635710,4644845..4645206,4649123..4649653)
location: region:4632813-4649653:1
so has part: feature:4632813-4633610:1:exon
so has part: feature:4635579-4635710:1:exon
so has part: feature:4644845-4645206:1:exon
so has part: feature:4649123-4649653:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4632813-4633610:1:exon

position:4633610:1
position: 4633610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4635579-4635710:1:exon

position:4635579:1
position: 4635579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4635710:1
position: 4635710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4644845-4645206:1:exon

position:4644845:1
position: 4644845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4645206:1
position: 4645206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4649123-4649653:1:exon

position:4649123:1
position: 4649123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102173863
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102173863
product: solute carrier family 7 member 13-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_013969362.2
SIO_010081: LOC102173863
subclass of: SO_0000673
so part of: LOC102173863
location: join(4632813..4633610,4635579..4635710,4645091..4645206,4649123..4649645)
location: region:4632813-4649645:1
so has part: feature:4632813-4633610:1:exon
so has part: feature:4635579-4635710:1:exon
so has part: feature:4645091-4645206:1:exon
so has part: feature:4649123-4649645:1:exon

position:4649645:1
position: 4649645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4632813-4633610:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4635579-4635710:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4645091-4645206:1:exon

position:4645091:1
position: 4645091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4649123-4649645:1:exon

LOC102173863
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102173863
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 7 member 13-like isoform X1
translation: MKVGESTQFQRVIGYFHGTIFLFSIIIGAGIFVAPKGVLKYSSLNVGVSLSIWAACAVVSMLAALSHAELGTTFPRSGAQYYFLKRSLGPFIAFFYLWTNLFSTPAGIAARGLLLAGYIMQPFYPGCFVPEMPKKCLALAILWCLGILNARGVKEVTWFQTVSTAVKMTVLGFISVTGIVLLVRGRRENLARFEKAFDADVPDASQIAEAFLQGLFAYSGWGVLVRIAGELKSPSENIPKCVVTALTLVALIYLLVNVSYLAVLTPKEIMSSDAVAVTWMDRVIPSLQWAVSLGVSSSIVSSLNCTIFSTSRLWYMASQEGQLPSILSTLNIHSCPVAAVIQMLIFASILIIPSDLILLISYVGFTDWIQLGLMMVGLLKLRFQEPNLSRPYKVRLPFVFGTMAISLFLVLTPIIKSPQIYHIYVILFILSGLLFYLPFVHFDLGSTYFNKITCFLQLLLNVSPADDIDEYISTGGKVQKNPPATATKK
SIO_010081: LOC102173863
subclass of: SO_0000673
so part of: LOC102173863
location: join(4632926..4633610,4635579..4635710,4644845..4645206,4649123..4649413)
location: region:4632926-4649413:1
so has part: feature:4632926-4633610:1:exon
so has part: feature:4635579-4635710:1:exon
so has part: feature:4644845-4645206:1:exon
so has part: feature:4649123-4649413:1:exon

XP_005689328.3
type: Protein
SIO_000068: ncbiprotein

position:4632926:1
position: 4632926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4649413:1
position: 4649413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4632926-4633610:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4635579-4635710:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4644845-4645206:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4649123-4649413:1:exon

LOC102173863
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102173863
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 7 member 13-like isoform X2
translation: MKVGESTQFQRVIGYFHGTIFLFSIIIGAGIFVAPKGVLKYSSLNVGVSLSIWAACAVVSMLAALSHAELGTTFPRSGAQYYFLKRSLGPFIAFFYLWTNLFSTPAGIAARGLLLAGYIMQPFYPGCFVPEMPKKCLALAILWCLGILNARGVKEVTWFQTVSTAVKMTVLGFISVTGIVLLVRGRRENLARFEKAFDADVPDASQIAEAFLQGLFAYSGWGVLVRIAGELKSPSENIPKCVVTALTLVALIYLLVNVSYLAVLTPKEIMSSDLILLISYVGFTDWIQLGLMMVGLLKLRFQEPNLSRPYKVRLPFVFGTMAISLFLVLTPIIKSPQIYHIYVILFILSGLLFYLPFVHFDLGSTYFNKITCFLQLLLNVSPADDIDEYISTGGKVQKNPPATATKK
SIO_010081: LOC102173863
subclass of: SO_0000673
so part of: LOC102173863
location: join(4632926..4633610,4635579..4635710,4645091..4645206,4649123..4649413)
location: region:4632926-4649413:1
so has part: feature:4632926-4633610:1:exon
so has part: feature:4635579-4635710:1:exon
so has part: feature:4645091-4645206:1:exon
so has part: feature:4649123-4649413:1:exon

XP_013824816.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4632926-4633610:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4635579-4635710:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4645091-4645206:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4649123-4649413:1:exon

LOC102175598
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102175598
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4652243..4669928
location: region:4652243-4669928:1
so has part: feature:4652243-4669928:1:exon
subclass of: SO_0000010

102175598
type: Gene
SIO_000068: ncbigene

position:4652243:1
position: 4652243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4669928:1
position: 4669928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4652243-4669928:1:exon

LOC102175598
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102175598
product: solute carrier family 7 member 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_018058169.1
SIO_010081: LOC102175598
subclass of: SO_0000673
so part of: LOC102175598
location: join(4652243..4653028,4661336..4661467,4664444..4664805,4668759..4669928)
location: region:4652243-4669928:1
so has part: feature:4652243-4653028:1:exon
so has part: feature:4661336-4661467:1:exon
so has part: feature:4664444-4664805:1:exon
so has part: feature:4668759-4669928:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4652243-4653028:1:exon

position:4653028:1
position: 4653028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4661336-4661467:1:exon

position:4661336:1
position: 4661336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4661467:1
position: 4661467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4664444-4664805:1:exon

position:4664444:1
position: 4664444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4664805:1
position: 4664805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4668759-4669928:1:exon

position:4668759:1
position: 4668759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102175598
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102175598
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 7 member 13
translation: MQLLRAIGFFRGNILILSATIGAGIFVSPKGVLKYSSLNVAVSLSIWAACAVLTLISALSHAELGTTFPISGAQYYFLKRSLGASVAFLNLWIKLFTHPLRLATESLLLSTYTIQPFYAGCPAPELPKRCLALAVLWSLGLLNARGVQTVAWLQTVSTLAKMTVLCFICLTGIVLLGMGEKENMARFENALDAELPDISQIAEAFLQGLFAYSGTSILNSMAGEIKNPGKNIPKSLMTGIPMVAVVYLLANVSYLAVLTPKEIVSADAVALTWTDKIMPSMQWAISFGISTSVFSSTCCTVLSASRMIYTASQEGQLPLIFSMLNSHSCPTMAVTQIIILTSIVIITSDLINLIRYSGLALWFLRGLHMIGLLKLRYQEPNLPRPYKVPLPFIFGSIAISLFLILTPLIKTPKMEHVYGLIFIISGLLCYWIQVHLNQHSVYFVKVTCYLQLLFNVSPPEDHISTEKRDLKEIFL
SIO_010081: LOC102175598
subclass of: SO_0000673
so part of: LOC102175598
location: join(4652362..4653028,4661336..4661467,4664444..4664805,4668759..4669025)
location: region:4652362-4669025:1
so has part: feature:4652362-4653028:1:exon
so has part: feature:4661336-4661467:1:exon
so has part: feature:4664444-4664805:1:exon
so has part: feature:4668759-4669025:1:exon

XP_017913658.1
type: Protein
SIO_000068: ncbiprotein

position:4652362:1
position: 4652362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4669025:1
position: 4669025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4652362-4653028:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4661336-4661467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4664444-4664805:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4668759-4669025:1:exon

LRRCC1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LRRCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4682230..4729335
location: region:4682230-4729335:1
so has part: feature:4682230-4729335:1:exon
subclass of: SO_0000010

102173584
type: Gene
SIO_000068: ncbigene

position:4682230:1
position: 4682230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4729335:1
position: 4729335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4682230-4729335:1:exon

LRRCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LRRCC1
product: leucine rich repeat and coiled-coil centrosomal protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 70 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_005689270.3
SIO_010081: LRRCC1
subclass of: SO_0000673
so part of: LRRCC1
location: join(4682230..4682428,4685394..4685599,4685875..4685940,4691880..4692047,4693961..4694136,4694231..4694437,4701014..4701210,4701481..4701628,4702719..4702867,4710069..4710273,4711023..4711162,4712073..4712274,4712857..4713042,4714006..4714180,4715110..4715273,4721544..4721752,4721842..4721979,4726555..4726690,4728513..4729335)
location: region:4682230-4729335:1
so has part: feature:4682230-4682428:1:exon
so has part: feature:4685394-4685599:1:exon
so has part: feature:4685875-4685940:1:exon
so has part: feature:4691880-4692047:1:exon
so has part: feature:4693961-4694136:1:exon
so has part: feature:4694231-4694437:1:exon
so has part: feature:4701014-4701210:1:exon
so has part: feature:4701481-4701628:1:exon
so has part: feature:4702719-4702867:1:exon
so has part: feature:4710069-4710273:1:exon
so has part: feature:4711023-4711162:1:exon
so has part: feature:4712073-4712274:1:exon
so has part: feature:4712857-4713042:1:exon
so has part: feature:4714006-4714180:1:exon
so has part: feature:4715110-4715273:1:exon
so has part: feature:4721544-4721752:1:exon
so has part: feature:4721842-4721979:1:exon
so has part: feature:4726555-4726690:1:exon
so has part: feature:4728513-4729335:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4682230-4682428:1:exon

position:4682428:1
position: 4682428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4685394-4685599:1:exon

position:4685394:1
position: 4685394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4685599:1
position: 4685599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4685875-4685940:1:exon

position:4685875:1
position: 4685875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4685940:1
position: 4685940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4691880-4692047:1:exon

position:4691880:1
position: 4691880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4692047:1
position: 4692047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4693961-4694136:1:exon

position:4693961:1
position: 4693961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4694136:1
position: 4694136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4694231-4694437:1:exon

position:4694231:1
position: 4694231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4694437:1
position: 4694437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4701014-4701210:1:exon

position:4701014:1
position: 4701014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4701210:1
position: 4701210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4701481-4701628:1:exon

position:4701481:1
position: 4701481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4701628:1
position: 4701628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4702719-4702867:1:exon

position:4702719:1
position: 4702719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4702867:1
position: 4702867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4710069-4710273:1:exon

position:4710069:1
position: 4710069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4710273:1
position: 4710273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4711023-4711162:1:exon

position:4711023:1
position: 4711023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4711162:1
position: 4711162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4712073-4712274:1:exon

position:4712073:1
position: 4712073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4712274:1
position: 4712274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4712857-4713042:1:exon

position:4712857:1
position: 4712857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4713042:1
position: 4713042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4714006-4714180:1:exon

position:4714006:1
position: 4714006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4714180:1
position: 4714180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4715110-4715273:1:exon

position:4715110:1
position: 4715110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4715273:1
position: 4715273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4721544-4721752:1:exon

position:4721544:1
position: 4721544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4721752:1
position: 4721752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4721842-4721979:1:exon

position:4721842:1
position: 4721842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4721979:1
position: 4721979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4726555-4726690:1:exon

position:4726555:1
position: 4726555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4726690:1
position: 4726690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4728513-4729335:1:exon

position:4728513:1
position: 4728513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LRRCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LRRCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and coiled-coil domain-containing protein 1
translation: MEAPGETEVENEDADSNCGDLCFMDKGLRSISELSLDSALHAINLHCNNISKITSIDHIWNLQHLDLSSNQISQIEGLNTLTKLCTLNLSCNLITRIEGLEALSNLTRLNLSYNHINDLSGLMPLHGIKHKLRYIDLHSNCIDSIHHLLQCTVGLHFLTNLILEKNGEDNPVCHLPGYRAVMLQTLPQLRILDCKNIFGEPINMAEINSSHLQCFEGLLDNLVSSESPLNISEDEITDGMPVAPPVGDTAPLDQFASTPTDTGLTSLMSVCPSSEPEKVNHENDLQNEMKLQKLDDQILQLLSETSNSIIDNVPEKEPRPKRDTDVTSESDYGNRKECSKKMSRRSKIPYYSKTIQTIKHHSKNSSTFISCNRKMKPPFLRELYISSSLPNNSTLEESENQKTEIMKLNNDGSEDATYRALVEELDEEREKRWKAEQTEKKLMDYIDELHKHAVEKKDIHSQALLTTDRLKEVIVKERNSKLQLEIMVHRLQNEIKKLTIELIKARDQQDDHIRHLRTLEKALEKMERQKGQQQAAQMRLIQEVELKAAAADREINLLRTSLHQEKEQVQQLHELLALKEKEHRKDIETREFFSEAEFQEALAKEIAKEERKHEQVIKEYQDKIDALNQQYMDLENEFRIALTVEARRFKDVKDGFENVATELAKSKHALVWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKQEKMQLISELAAKESLIYGLRTERKVWGHELALQGSPLVQNHGRVEAQLESLCRENECLRKASERDSNTIRIKCKIIDDQTETIGKLKECLQEREEQIKILHEKITEIQRCTQEQLEEKTSQLDEIVEKLERHNERKEKLKQQLKVKELELDEIRKAYSTLNQKWHDKGELLCHLEMQVKEVKENFENKERKLKAERDKSIELQKDAMEKLHSMDDAFKKQVDAIVEAHQNEIIQLANEKQKCIDSANLKVHRVEEEMRGLLEETCKNKKAMETKIKQLAFALSQIQQEI
SIO_010081: LRRCC1
subclass of: SO_0000673
so part of: LRRCC1
location: join(4682340..4682428,4685394..4685599,4685875..4685940,4691880..4692047,4693961..4694136,4694231..4694437,4701014..4701210,4701481..4701628,4702719..4702867,4710069..4710273,4711023..4711162,4712073..4712274,4712857..4713042,4714006..4714180,4715110..4715273,4721544..4721752,4721842..4721979,4726555..4726690,4728513..4728635)
location: region:4682340-4728635:1
so has part: feature:4682340-4682428:1:exon
so has part: feature:4685394-4685599:1:exon
so has part: feature:4685875-4685940:1:exon
so has part: feature:4691880-4692047:1:exon
so has part: feature:4693961-4694136:1:exon
so has part: feature:4694231-4694437:1:exon
so has part: feature:4701014-4701210:1:exon
so has part: feature:4701481-4701628:1:exon
so has part: feature:4702719-4702867:1:exon
so has part: feature:4710069-4710273:1:exon
so has part: feature:4711023-4711162:1:exon
so has part: feature:4712073-4712274:1:exon
so has part: feature:4712857-4713042:1:exon
so has part: feature:4714006-4714180:1:exon
so has part: feature:4715110-4715273:1:exon
so has part: feature:4721544-4721752:1:exon
so has part: feature:4721842-4721979:1:exon
so has part: feature:4726555-4726690:1:exon
so has part: feature:4728513-4728635:1:exon

XP_005689327.2
type: Protein
SIO_000068: ncbiprotein

position:4682340:1
position: 4682340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4728635:1
position: 4728635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4682340-4682428:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4685394-4685599:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4685875-4685940:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4691880-4692047:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4693961-4694136:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4694231-4694437:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4701014-4701210:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4701481-4701628:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4702719-4702867:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4710069-4710273:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4711023-4711162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4712073-4712274:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4712857-4713042:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4714006-4714180:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4715110-4715273:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4721544-4721752:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4721842-4721979:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4726555-4726690:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4728513-4728635:1:exon

E2F5
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: E2F5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4736901..4770265
location: region:4736901-4770265:1
so has part: feature:4736901-4770265:1:exon
subclass of: SO_0000010

102172824
type: Gene
SIO_000068: ncbigene

position:4736901:1
position: 4736901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4770265:1
position: 4770265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4736901-4770265:1:exon

E2F5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: E2F5
product: E2F transcription factor 5, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 19 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_018058171.1
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: join(4736901..4737134,4763089..4763198,4764026..4764187,4765467..4765510,4767139..4767203,4768491..4768758,4769278..4769325,4769496..4770265)
location: region:4736901-4770265:1
so has part: feature:4736901-4737134:1:exon
so has part: feature:4763089-4763198:1:exon
so has part: feature:4764026-4764187:1:exon
so has part: feature:4765467-4765510:1:exon
so has part: feature:4767139-4767203:1:exon
so has part: feature:4768491-4768758:1:exon
so has part: feature:4769278-4769325:1:exon
so has part: feature:4769496-4770265:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4736901-4737134:1:exon

position:4737134:1
position: 4737134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4763089-4763198:1:exon

position:4763089:1
position: 4763089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4763198:1
position: 4763198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4764026-4764187:1:exon

position:4764026:1
position: 4764026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4764187:1
position: 4764187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4765467-4765510:1:exon

position:4765467:1
position: 4765467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4765510:1
position: 4765510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4767139-4767203:1:exon

position:4767139:1
position: 4767139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4767203:1
position: 4767203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4768491-4768758:1:exon

position:4768491:1
position: 4768491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4768758:1
position: 4768758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4769278-4769325:1:exon

position:4769278:1
position: 4769278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4769325:1
position: 4769325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4769496-4770265:1:exon

position:4769496:1
position: 4769496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

E2F5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: E2F5
product: E2F transcription factor 5, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 23 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_018058170.1
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: join(4736947..4737134,4763089..4763198,4764026..4764187,4765467..4765510,4767139..4767203,4768491..4768758,4769281..4769325,4769496..4770265)
location: region:4736947-4770265:1
so has part: feature:4736947-4737134:1:exon
so has part: feature:4763089-4763198:1:exon
so has part: feature:4764026-4764187:1:exon
so has part: feature:4765467-4765510:1:exon
so has part: feature:4767139-4767203:1:exon
so has part: feature:4768491-4768758:1:exon
so has part: feature:4769281-4769325:1:exon
so has part: feature:4769496-4770265:1:exon

position:4736947:1
position: 4736947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4736947-4737134:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4763089-4763198:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4764026-4764187:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4765467-4765510:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4767139-4767203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4768491-4768758:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4769281-4769325:1:exon

position:4769281:1
position: 4769281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4769496-4770265:1:exon

E2F5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: E2F5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor E2F5 isoform X3
translation: MAAAEPASCAPPGAGSSRHEKSLGLLTAKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDDLTQPPSQPPTPVPPHKSSTAVQSLPEPAVSERSQTLQHTPATDLSSAGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: join(4736997..4737134,4763089..4763198,4764026..4764187,4765467..4765510,4767139..4767203,4768491..4768758,4769278..4769325,4769496..4769605)
location: region:4736997-4769605:1
so has part: feature:4736997-4737134:1:exon
so has part: feature:4763089-4763198:1:exon
so has part: feature:4764026-4764187:1:exon
so has part: feature:4765467-4765510:1:exon
so has part: feature:4767139-4767203:1:exon
so has part: feature:4768491-4768758:1:exon
so has part: feature:4769278-4769325:1:exon
so has part: feature:4769496-4769605:1:exon

XP_017913660.1
type: Protein
SIO_000068: ncbiprotein

position:4736997:1
position: 4736997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4769605:1
position: 4769605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4736997-4737134:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4763089-4763198:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4764026-4764187:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4765467-4765510:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4767139-4767203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4768491-4768758:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4769278-4769325:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4769496-4769605:1:exon

E2F5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: E2F5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor E2F5 isoform X1
translation: MAAAEPASCAPPGAGSSRHEKSLGLLTAKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDDLTQPPSQPPTPVPPHKSSTAVQSLPEPAVSERSQTLQHTPATDLSSGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: join(4736997..4737134,4763089..4763198,4764026..4764187,4765467..4765510,4767139..4767203,4768491..4768758,4769281..4769325,4769496..4769605)
location: region:4736997-4769605:1
so has part: feature:4736997-4737134:1:exon
so has part: feature:4763089-4763198:1:exon
so has part: feature:4764026-4764187:1:exon
so has part: feature:4765467-4765510:1:exon
so has part: feature:4767139-4767203:1:exon
so has part: feature:4768491-4768758:1:exon
so has part: feature:4769281-4769325:1:exon
so has part: feature:4769496-4769605:1:exon

XP_017913659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4736997-4737134:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4763089-4763198:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4764026-4764187:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4765467-4765510:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4767139-4767203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4768491-4768758:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4769281-4769325:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4769496-4769605:1:exon

E2F5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: E2F5
product: E2F transcription factor 5, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 19 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_005689267.3
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: join(4760661..4760678,4763089..4763198,4764026..4764187,4765467..4765510,4767139..4767203,4768491..4768758,4769278..4769325,4769496..4770265)
location: region:4760661-4770265:1
so has part: feature:4760661-4760678:1:exon
so has part: feature:4763089-4763198:1:exon
so has part: feature:4764026-4764187:1:exon
so has part: feature:4765467-4765510:1:exon
so has part: feature:4767139-4767203:1:exon
so has part: feature:4768491-4768758:1:exon
so has part: feature:4769278-4769325:1:exon
so has part: feature:4769496-4770265:1:exon

position:4760661:1
position: 4760661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4760661-4760678:1:exon

position:4760678:1
position: 4760678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4763089-4763198:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4764026-4764187:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4765467-4765510:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4767139-4767203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4768491-4768758:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4769278-4769325:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4769496-4770265:1:exon

E2F5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: E2F5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor E2F5 isoform X2
translation: MAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSINNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDDLTQPPSQPPTPVPPHKSSTAVQSLPEPAVSERSQTLQHTPATDLSSAGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: join(4760676..4760678,4763089..4763198,4764026..4764187,4765467..4765510,4767139..4767203,4768491..4768758,4769278..4769325,4769496..4769605)
location: region:4760676-4769605:1
so has part: feature:4760676-4760678:1:exon
so has part: feature:4763089-4763198:1:exon
so has part: feature:4764026-4764187:1:exon
so has part: feature:4765467-4765510:1:exon
so has part: feature:4767139-4767203:1:exon
so has part: feature:4768491-4768758:1:exon
so has part: feature:4769278-4769325:1:exon
so has part: feature:4769496-4769605:1:exon

XP_005689324.2
type: Protein
SIO_000068: ncbiprotein

position:4760676:1
position: 4760676
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4760676-4760678:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4763089-4763198:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4764026-4764187:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4765467-4765510:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4767139-4767203:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4768491-4768758:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4769278-4769325:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4769496-4769605:1:exon

C14H8orf59
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: C14H8orf59
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4770244..4777776)
location: region:4770244-4777776:-1
so has part: feature:4770244-4777776:-1:exon
subclass of: SO_0000010

102173317
type: Gene
SIO_000068: ncbigene

position:4770244:-1
position: 4770244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4777776:-1
position: 4777776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4770244-4777776:-1:exon

C14H8orf59
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: C14H8orf59
product: chromosome 14 C8orf59 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 27 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_018058172.1
SIO_010081: C14H8orf59
subclass of: SO_0000673
so part of: C14H8orf59
location: complement(join(4770244..4770378,4770644..4770760,4772860..4772976,4777522..4777776))
location: region:4770244-4777776:-1
so has part: feature:4777522-4777776:-1:exon
so has part: feature:4772860-4772976:-1:exon
so has part: feature:4770644-4770760:-1:exon
so has part: feature:4770244-4770378:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4777522-4777776:-1:exon

position:4777522:-1
position: 4777522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4772860-4772976:-1:exon

position:4772860:-1
position: 4772860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4772976:-1
position: 4772976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4770644-4770760:-1:exon

position:4770644:-1
position: 4770644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4770760:-1
position: 4770760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4770244-4770378:-1:exon

position:4770378:-1
position: 4770378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C14H8orf59
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: C14H8orf59
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C8orf59 homolog
translation: MAKNKLRGQKSRNVFHIASQKSFKVKNKAKPVTTNLKKINIMNDEKVNRVNKAFIDIQKELANFSKGLSLEPLQKQLMSQQCHENVPVNVDEATRLMAQL
SIO_010081: C14H8orf59
subclass of: SO_0000673
so part of: C14H8orf59
location: complement(join(4770307..4770378,4770644..4770760,4772860..4772973))
location: region:4770307-4772973:-1
so has part: feature:4772860-4772973:-1:exon
so has part: feature:4770644-4770760:-1:exon
so has part: feature:4770307-4770378:-1:exon

XP_017913661.1
type: Protein
SIO_000068: ncbiprotein

position:4770307:-1
position: 4770307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4772973:-1
position: 4772973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4772860-4772973:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4770644-4770760:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4770307-4770378:-1:exon

LOC102175315
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102175315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4802131..4841275
location: region:4802131-4841275:1
so has part: feature:4802131-4841275:1:exon
subclass of: SO_0000010

102175315
type: Gene
SIO_000068: ncbigene

position:4802131:1
position: 4802131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4841275:1
position: 4841275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4802131-4841275:1:exon

LOC102175315
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102175315
product: carbonic anhydrase 13, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_018058174.1
SIO_010081: LOC102175315
subclass of: SO_0000673
so part of: LOC102175315
location: join(4802131..4802227,4807148..4807345,4824665..4824760,4826026..4826088,4826606..4826761,4839150..4841275)
location: region:4802131-4841275:1
so has part: feature:4802131-4802227:1:exon
so has part: feature:4807148-4807345:1:exon
so has part: feature:4824665-4824760:1:exon
so has part: feature:4826026-4826088:1:exon
so has part: feature:4826606-4826761:1:exon
so has part: feature:4839150-4841275:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4802131-4802227:1:exon

position:4802227:1
position: 4802227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4807148-4807345:1:exon

position:4807148:1
position: 4807148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4807345:1
position: 4807345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4824665-4824760:1:exon

position:4824665:1
position: 4824665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4824760:1
position: 4824760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4826026-4826088:1:exon

position:4826026:1
position: 4826026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4826088:1
position: 4826088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4826606-4826761:1:exon

position:4826606:1
position: 4826606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4826761:1
position: 4826761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4839150-4841275:1:exon

position:4839150:1
position: 4839150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102175315
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102175315
product: carbonic anhydrase 13, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_018058173.1
SIO_010081: LOC102175315
subclass of: SO_0000673
so part of: LOC102175315
location: join(4802137..4802227,4807148..4807345,4818000..4818118,4824665..4824760,4826026..4826088,4826606..4826761,4839150..4841275)
location: region:4802137-4841275:1
so has part: feature:4802137-4802227:1:exon
so has part: feature:4807148-4807345:1:exon
so has part: feature:4818000-4818118:1:exon
so has part: feature:4824665-4824760:1:exon
so has part: feature:4826026-4826088:1:exon
so has part: feature:4826606-4826761:1:exon
so has part: feature:4839150-4841275:1:exon

position:4802137:1
position: 4802137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4802137-4802227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4807148-4807345:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4818000-4818118:1:exon

position:4818000:1
position: 4818000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4818118:1
position: 4818118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4824665-4824760:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4826026-4826088:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4826606-4826761:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4839150-4841275:1:exon

LOC102175315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102175315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 13 isoform X1
translation: MSGFSWGYGERDGPVHWNEFFPIADGDQQSPIEIKTKEVRYDSSLRPLGIKYDASSAKIISNSGHSFNVDFDDTDDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGIFLQIGEHNPQLQKITDILDSIKEKGKQTRFTNFDPVCLLPPCRDYWTYPGSLTVPPLLESVTWIILKQPINISSQQLAAFRTLLCSREGETAAFLLSNHRPPQPLKGRKVRASFR
SIO_010081: LOC102175315
subclass of: SO_0000673
so part of: LOC102175315
location: join(4802191..4802227,4807148..4807345,4818000..4818118,4824665..4824760,4826026..4826088,4826606..4826761,4839150..4839269)
location: region:4802191-4839269:1
so has part: feature:4802191-4802227:1:exon
so has part: feature:4807148-4807345:1:exon
so has part: feature:4818000-4818118:1:exon
so has part: feature:4824665-4824760:1:exon
so has part: feature:4826026-4826088:1:exon
so has part: feature:4826606-4826761:1:exon
so has part: feature:4839150-4839269:1:exon

XP_017913662.1
type: Protein
SIO_000068: ncbiprotein

position:4802191:1
position: 4802191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4839269:1
position: 4839269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4802191-4802227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4807148-4807345:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4818000-4818118:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4824665-4824760:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4826026-4826088:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4826606-4826761:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4839150-4839269:1:exon

LOC102175315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102175315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 13 isoform X2
translation: MILPSDLLVSSTTPAQLKSSVTAATPSTLTLMTRTTNQLHVVHWNSDKYPSFVEAAHEPDGLAVLGIFLQIGEHNPQLQKITDILDSIKEKGKQTRFTNFDPVCLLPPCRDYWTYPGSLTVPPLLESVTWIILKQPINISSQQLAAFRTLLCSREGETAAFLLSNHRPPQPLKGRKVRASFR
SIO_010081: LOC102175315
subclass of: SO_0000673
so part of: LOC102175315
location: join(4807232..4807345,4824665..4824760,4826026..4826088,4826606..4826761,4839150..4839269)
location: region:4807232-4839269:1
so has part: feature:4807232-4807345:1:exon
so has part: feature:4824665-4824760:1:exon
so has part: feature:4826026-4826088:1:exon
so has part: feature:4826606-4826761:1:exon
so has part: feature:4839150-4839269:1:exon

XP_017913663.1
type: Protein
SIO_000068: ncbiprotein

position:4807232:1
position: 4807232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4807232-4807345:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4824665-4824760:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4826026-4826088:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4826606-4826761:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4839150-4839269:1:exon

LOC108637506
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC108637506
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4898643..4908550)
location: region:4898643-4908550:-1
so has part: feature:4898643-4908550:-1:exon

108637506
type: Gene
SIO_000068: ncbigene

position:4898643:-1
position: 4898643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4908550:-1
position: 4908550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4898643-4908550:-1:exon

LOC108637506
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9925
gene: LOC108637506
product: carbonic anhydrase 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 683 ESTs, 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
pseudo: true
transcript id: XR_001919115.1
SIO_010081: LOC108637506
so part of: LOC108637506
location: complement(join(4898643..4900002,4900860..4901016,4902494..4902556,4903282..4903377,4906148..4906266,4907732..4907929,4908419..4908550))
location: region:4898643-4908550:-1
so has part: feature:4908419-4908550:-1:exon
so has part: feature:4907732-4907929:-1:exon
so has part: feature:4906148-4906266:-1:exon
so has part: feature:4903282-4903377:-1:exon
so has part: feature:4902494-4902556:-1:exon
so has part: feature:4900860-4901016:-1:exon
so has part: feature:4898643-4900002:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4908419-4908550:-1:exon

position:4908419:-1
position: 4908419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4907732-4907929:-1:exon

position:4907732:-1
position: 4907732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4907929:-1
position: 4907929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4906148-4906266:-1:exon

position:4906148:-1
position: 4906148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4906266:-1
position: 4906266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4903282-4903377:-1:exon

position:4903282:-1
position: 4903282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4903377:-1
position: 4903377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4902494-4902556:-1:exon

position:4902494:-1
position: 4902494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4902556:-1
position: 4902556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4900860-4901016:-1:exon

position:4900860:-1
position: 4900860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4901016:-1
position: 4901016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4898643-4900002:-1:exon

position:4900002:-1
position: 4900002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC106502860
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC106502860
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4965054..4974253
location: region:4965054-4974253:1
so has part: feature:4965054-4974253:1:exon
subclass of: SO_0000010

106502860
type: Gene
SIO_000068: ncbigene

position:4965054:1
position: 4965054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4974253:1
position: 4974253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4965054-4974253:1:exon

LOC106502860
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC106502860
product: carbonic anhydrase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_018058176.1
SIO_010081: LOC106502860
subclass of: SO_0000673
so part of: LOC106502860
location: join(4965054..4965185,4965675..4965872,4967331..4967449,4970212..4970307,4971032..4971094,4972552..4972707,4973562..4974253)
location: region:4965054-4974253:1
so has part: feature:4965054-4965185:1:exon
so has part: feature:4965675-4965872:1:exon
so has part: feature:4967331-4967449:1:exon
so has part: feature:4970212-4970307:1:exon
so has part: feature:4971032-4971094:1:exon
so has part: feature:4972552-4972707:1:exon
so has part: feature:4973562-4974253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4965054-4965185:1:exon

position:4965185:1
position: 4965185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4965675-4965872:1:exon

position:4965675:1
position: 4965675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4965872:1
position: 4965872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4967331-4967449:1:exon

position:4967331:1
position: 4967331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4967449:1
position: 4967449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4970212-4970307:1:exon

position:4970212:1
position: 4970212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4970307:1
position: 4970307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4971032-4971094:1:exon

position:4971032:1
position: 4971032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4971094:1
position: 4971094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4972552-4972707:1:exon

position:4972552:1
position: 4972552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4972707:1
position: 4972707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4973562-4974253:1:exon

position:4973562:1
position: 4973562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC106502860
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC106502860
product: carbonic anhydrase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_018058177.1
SIO_010081: LOC106502860
subclass of: SO_0000673
so part of: LOC106502860
location: join(4965054..4965185,4965675..4965872,4967331..4967449,4970212..4970307,4972552..4972707,4973562..4974253)
location: region:4965054-4974253:1
so has part: feature:4965054-4965185:1:exon
so has part: feature:4965675-4965872:1:exon
so has part: feature:4967331-4967449:1:exon
so has part: feature:4970212-4970307:1:exon
so has part: feature:4972552-4972707:1:exon
so has part: feature:4973562-4974253:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4965054-4965185:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4965675-4965872:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4967331-4967449:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4970212-4970307:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4972552-4972707:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4973562-4974253:1:exon

LOC106502860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC106502860
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 1 isoform X1
translation: MASPDWGYDGENGPEHWCKLHPIANGNNQSPIDIKTSETKRDPSLKPLSISYNPATAKEIVNVGHSFHVNFEDSDNRSVLKGGPLPESYRLRQFHFHWGSTDDCGSEHLVDGAPFSAELHLVHWNSTKYPSFADAASQADGLVIVGVLMKVGQANPNLQKVLDALKTVKTKNKKAPFTNFDPSVLLPSCPDYWAYFGSLTHPPLHESVTWIIFKETISVSAEQLAQFRSLLANAEGDQEVCIKQNYRPPQPLKGRTVKASF
SIO_010081: LOC106502860
subclass of: SO_0000673
so part of: LOC106502860
location: join(4965149..4965185,4965675..4965872,4967331..4967449,4970212..4970307,4971032..4971094,4972552..4972707,4973562..4973678)
location: region:4965149-4973678:1
so has part: feature:4965149-4965185:1:exon
so has part: feature:4965675-4965872:1:exon
so has part: feature:4967331-4967449:1:exon
so has part: feature:4970212-4970307:1:exon
so has part: feature:4971032-4971094:1:exon
so has part: feature:4972552-4972707:1:exon
so has part: feature:4973562-4973678:1:exon

XP_017913665.1
type: Protein
SIO_000068: ncbiprotein

position:4965149:1
position: 4965149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4973678:1
position: 4973678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4965149-4965185:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4965675-4965872:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4967331-4967449:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4970212-4970307:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4971032-4971094:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4972552-4972707:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4973562-4973678:1:exon

LOC106502860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC106502860
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 1 isoform X2
translation: MASPDWGYDGENGPEHWCKLHPIANGNNQSPIDIKTSETKRDPSLKPLSISYNPATAKEIVNVGHSFHVNFEDSDNRSVLKGGPLPESYRLRQFHFHWGSTDDCGSEHLVDGAPFSAELHLVHWNSTKYPSFADAASQADGLVIVGVLMKNKKAPFTNFDPSVLLPSCPDYWAYFGSLTHPPLHESVTWIIFKETISVSAEQLAQFRSLLANAEGDQEVCIKQNYRPPQPLKGRTVKASF
SIO_010081: LOC106502860
subclass of: SO_0000673
so part of: LOC106502860
location: join(4965149..4965185,4965675..4965872,4967331..4967449,4970212..4970307,4972552..4972707,4973562..4973678)
location: region:4965149-4973678:1
so has part: feature:4965149-4965185:1:exon
so has part: feature:4965675-4965872:1:exon
so has part: feature:4967331-4967449:1:exon
so has part: feature:4970212-4970307:1:exon
so has part: feature:4972552-4972707:1:exon
so has part: feature:4973562-4973678:1:exon

XP_017913666.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4965149-4965185:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4965675-4965872:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4967331-4967449:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4970212-4970307:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4972552-4972707:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4973562-4973678:1:exon

CA3
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: CA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5125572..5136572
location: region:5125572-5136572:1
so has part: feature:5125572-5136572:1:exon
subclass of: SO_0000010

102175043
type: Gene
SIO_000068: ncbigene

position:5125572:1
position: 5125572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5136572:1
position: 5136572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5125572-5136572:1:exon

CA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: CA3
product: carbonic anhydrase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 790 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_018058178.1
SIO_010081: CA3
subclass of: SO_0000673
so part of: CA3
location: join(5125572..5125728,5126402..5126599,5128874..5128992,5130711..5130803,5131883..5131945,5133908..5134063,5135586..5136572)
location: region:5125572-5136572:1
so has part: feature:5125572-5125728:1:exon
so has part: feature:5126402-5126599:1:exon
so has part: feature:5128874-5128992:1:exon
so has part: feature:5130711-5130803:1:exon
so has part: feature:5131883-5131945:1:exon
so has part: feature:5133908-5134063:1:exon
so has part: feature:5135586-5136572:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5125572-5125728:1:exon

position:5125728:1
position: 5125728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5126402-5126599:1:exon

position:5126402:1
position: 5126402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5126599:1
position: 5126599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5128874-5128992:1:exon

position:5128874:1
position: 5128874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5128992:1
position: 5128992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5130711-5130803:1:exon

position:5130711:1
position: 5130711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5130803:1
position: 5130803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5131883-5131945:1:exon

position:5131883:1
position: 5131883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5131945:1
position: 5131945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5133908-5134063:1:exon

position:5133908:1
position: 5133908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5134063:1
position: 5134063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5135586-5136572:1:exon

position:5135586:1
position: 5135586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: CA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 3
translation: MAKEWGYADHNGPDHWHELYPIAKGENQSPIELNTKEISHDPSLKPWTASYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLAAPYRLRQFHLHWGSSDDHGSEHSVDGVKYAAELHLVHWNSKYNSYATALKHPDGIAVIGVFLKIGREKGEFQLFLDALDKIKTKGKEAPFNNFNPSCLFPACRDYWTYHGSFTTPPCEECIVWLLLKEPITVSSDQIAKLRTLYSSAENEPPVPLVRNWRPPQPIKGRIVKASFK
SIO_010081: CA3
subclass of: SO_0000673
so part of: CA3
location: join(5125695..5125728,5126402..5126599,5128874..5128992,5130711..5130803,5131883..5131945,5133908..5134063,5135586..5135705)
location: region:5125695-5135705:1
so has part: feature:5125695-5125728:1:exon
so has part: feature:5126402-5126599:1:exon
so has part: feature:5128874-5128992:1:exon
so has part: feature:5130711-5130803:1:exon
so has part: feature:5131883-5131945:1:exon
so has part: feature:5133908-5134063:1:exon
so has part: feature:5135586-5135705:1:exon

XP_017913667.1
type: Protein
SIO_000068: ncbiprotein

position:5125695:1
position: 5125695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5135705:1
position: 5135705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5125695-5125728:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5126402-5126599:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5128874-5128992:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5130711-5130803:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5131883-5131945:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5133908-5134063:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5135586-5135705:1:exon

LOC102174762
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102174762
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5152875..5170159
location: region:5152875-5170159:1
so has part: feature:5152875-5170159:1:exon
subclass of: SO_0000010

102174762
type: Gene
SIO_000068: ncbigene

position:5152875:1
position: 5152875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5170159:1
position: 5170159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5152875-5170159:1:exon

LOC102174762
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102174762
product: carbonic anhydrase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_018058179.1
SIO_010081: LOC102174762
subclass of: SO_0000673
so part of: LOC102174762
location: join(5152875..5153071,5154240..5154437,5163085..5163203,5164158..5164250,5165588..5165650,5167792..5167947,5169286..5170159)
location: region:5152875-5170159:1
so has part: feature:5152875-5153071:1:exon
so has part: feature:5154240-5154437:1:exon
so has part: feature:5163085-5163203:1:exon
so has part: feature:5164158-5164250:1:exon
so has part: feature:5165588-5165650:1:exon
so has part: feature:5167792-5167947:1:exon
so has part: feature:5169286-5170159:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5152875-5153071:1:exon

position:5153071:1
position: 5153071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5154240-5154437:1:exon

position:5154240:1
position: 5154240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5154437:1
position: 5154437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5163085-5163203:1:exon

position:5163085:1
position: 5163085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5163203:1
position: 5163203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5164158-5164250:1:exon

position:5164158:1
position: 5164158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5164250:1
position: 5164250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5165588-5165650:1:exon

position:5165588:1
position: 5165588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5165650:1
position: 5165650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5167792-5167947:1:exon

position:5167792:1
position: 5167792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5167947:1
position: 5167947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5169286-5170159:1:exon

position:5169286:1
position: 5169286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102174762
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102174762
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 2
translation: MAHHWGYGEHNGPEHWHKDFPIANGERQSPVDIDTKAVVPDPALKPLALLYEQAASRRMVNNGHSFNVEFDDSQDKAVLKDGPLPGTYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHLVHWNTKYGDFGTAAQQPDGLAVVGVFLKVGDANPALQKVLDVLDSIKTKGKSADFPNFNPSSLLPKALDYWTYPGSLTTPPLLESVTWVVLKEPISVSSQQMLKFRSLNFNAEGEPELLMLANWRPAQPLKNRQVRVFPK
SIO_010081: LOC102174762
subclass of: SO_0000673
so part of: LOC102174762
location: join(5153038..5153071,5154240..5154437,5163085..5163203,5164158..5164250,5165588..5165650,5167792..5167947,5169286..5169405)
location: region:5153038-5169405:1
so has part: feature:5153038-5153071:1:exon
so has part: feature:5154240-5154437:1:exon
so has part: feature:5163085-5163203:1:exon
so has part: feature:5164158-5164250:1:exon
so has part: feature:5165588-5165650:1:exon
so has part: feature:5167792-5167947:1:exon
so has part: feature:5169286-5169405:1:exon

XP_017913668.1
type: Protein
SIO_000068: ncbiprotein

position:5153038:1
position: 5153038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5169405:1
position: 5169405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5153038-5153071:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5154240-5154437:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5163085-5163203:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5164158-5164250:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5165588-5165650:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5167792-5167947:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5169286-5169405:1:exon

TRNAS-GGA
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TRNAS-GGA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5393616..5393687
location: region:5393616-5393687:1
so has part: feature:5393616-5393687:1:exon
subclass of: SO_0000663

108637542
type: Gene
SIO_000068: ncbigene

position:5393616:1
position: 5393616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5393687:1
position: 5393687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5393616-5393687:1:exon

TRNAS-GGA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9925
gene: TRNAS-GGA
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon GGA); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5393649..5393651,aa:Ser,seq:gga)
SIO_010081: TRNAS-GGA
subclass of: SO_0000673
so part of: TRNAS-GGA
location: 5393616..5393687
location: region:5393616-5393687:1
so has part: feature:5393616-5393687:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5393616-5393687:1:exon

LOC108637507
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC108637507
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5506570..5508084)
location: region:5506570-5508084:-1
so has part: feature:5506570-5508084:-1:exon
subclass of: SO_0000011

108637507
type: Gene
SIO_000068: ncbigene

position:5506570:-1
position: 5506570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5508084:-1
position: 5508084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5506570-5508084:-1:exon

LOC108637507
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC108637507
product: uncharacterized LOC108637507
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_001919116.1
SIO_010081: LOC108637507
subclass of: SO_0000673
so part of: LOC108637507
location: complement(join(5506570..5506877,5507923..5508084))
location: region:5506570-5508084:-1
so has part: feature:5507923-5508084:-1:exon
so has part: feature:5506570-5506877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5507923-5508084:-1:exon

position:5507923:-1
position: 5507923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5506570-5506877:-1:exon

position:5506877:-1
position: 5506877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PSKH2
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: PSKH2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5568489..5579010)
location: region:5568489-5579010:-1
so has part: feature:5568489-5579010:-1:exon
subclass of: SO_0000010

102174226
type: Gene
SIO_000068: ncbigene

position:5568489:-1
position: 5568489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5579010:-1
position: 5579010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5568489-5579010:-1:exon

PSKH2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: PSKH2
product: protein serine kinase H2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 6 bases in 4 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_018058079.1
SIO_010081: PSKH2
subclass of: SO_0000673
so part of: PSKH2
location: complement(join(5568489..5568788,5576767..5577421,5579002..5579010))
location: region:5568489-5579010:-1
so has part: feature:5579002-5579010:-1:exon
so has part: feature:5576767-5577421:-1:exon
so has part: feature:5568489-5568788:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5579002-5579010:-1:exon

position:5579002:-1
position: 5579002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5576767-5577421:-1:exon

position:5576767:-1
position: 5576767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5577421:-1
position: 5577421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5568489-5568788:-1:exon

position:5568788:-1
position: 5568788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PSKH2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: PSKH2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 6 bases in 4 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: serine/threonine-protein kinase H2
translation: MMQDIKTFIGTSSFXEVVRVELKTTEKPFAIQVMETRMREGREVCSLSYLSYGGVSHRSIIQLLEIFGAQDRVYMVVGLGPEREFFDRLISQGSFIEQDAVRIPHVVADGMRYVHASKITNRDLKLEKLLHDHPGVDSNILITDFDLAHSRNKGGDWTVRMFCGTPEYIAPKVLLRKSYISTADVWXLIEYVLLGRSLSFDDESHVRLYGKILKGKDSYTGEPWPGFLYWVKNFIGKLVXLGGNHRLSAGQAWNHSWVITMAVGSSMKTLQGSFPXESHQGTSPHPQSPGSAQSSKAYSYHKSRHTWSKRSLRVEESPQPVL
SIO_010081: PSKH2
subclass of: SO_0000673
so part of: PSKH2
location: complement(join(5568489..5568788,5576767..5577421,5579002..5579010))
location: region:5568489-5579010:-1
so has part: feature:5579002-5579010:-1:exon
so has part: feature:5576767-5577421:-1:exon
so has part: feature:5568489-5568788:-1:exon

XP_017913568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5579002-5579010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5576767-5577421:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5568489-5568788:-1:exon

ATP6V0D2
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: ATP6V0D2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5613526..5668839
location: region:5613526-5668839:1
so has part: feature:5613526-5668839:1:exon
subclass of: SO_0000010

102172556
type: Gene
SIO_000068: ncbigene

position:5613526:1
position: 5613526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5668839:1
position: 5668839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5613526-5668839:1:exon

ATP6V0D2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: ATP6V0D2
product: ATPase H+ transporting V0 subunit d2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_005689266.3
SIO_010081: ATP6V0D2
subclass of: SO_0000673
so part of: ATP6V0D2
location: join(5613526..5614022,5628660..5628831,5654259..5654437,5655632..5655711,5657515..5657592,5664836..5665012,5666156..5666233,5667917..5668839)
location: region:5613526-5668839:1
so has part: feature:5613526-5614022:1:exon
so has part: feature:5628660-5628831:1:exon
so has part: feature:5654259-5654437:1:exon
so has part: feature:5655632-5655711:1:exon
so has part: feature:5657515-5657592:1:exon
so has part: feature:5664836-5665012:1:exon
so has part: feature:5666156-5666233:1:exon
so has part: feature:5667917-5668839:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5613526-5614022:1:exon

position:5614022:1
position: 5614022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5628660-5628831:1:exon

position:5628660:1
position: 5628660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5628831:1
position: 5628831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5654259-5654437:1:exon

position:5654259:1
position: 5654259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5654437:1
position: 5654437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5655632-5655711:1:exon

position:5655632:1
position: 5655632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5655711:1
position: 5655711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5657515-5657592:1:exon

position:5657515:1
position: 5657515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5657592:1
position: 5657592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5664836-5665012:1:exon

position:5664836:1
position: 5664836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5665012:1
position: 5665012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5666156-5666233:1:exon

position:5666156:1
position: 5666156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5666233:1
position: 5666233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5667917-5668839:1:exon

position:5667917:1
position: 5667917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATP6V0D2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: ATP6V0D2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-type proton ATPase subunit d 2
translation: MLESAELNFNADHGYLEGLVRGCKAGLLTRRDYVNLVQCENLEDLKIHLQTTDYGNFLANQATPLTVSVIDTEMRKKLCREFEYFRNHSLEPLSTFFTYMTCSYMIDNVILLMNGALHNKPVKDILVKCHPLGHFTEMEAVNIAETPSDLFNAILVETPLAPFFQDCTSENALDELNIEILRNKLYKSYIEAFYKFCKNHGDVTAEVMCPILEFEADRRAFIITLNSFGTELSKEDRETLYPTCGKLHPEGLRLLAQAEDFEQMKRVADSYGVYKPLFEAVSDSSGGKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYTKLKEQEMRNIVWIAECISQRQRTKINSYIPIL
SIO_010081: ATP6V0D2
subclass of: SO_0000673
so part of: ATP6V0D2
location: join(5613893..5614022,5628660..5628831,5654259..5654437,5655632..5655711,5657515..5657592,5664836..5665012,5666156..5666233,5667917..5668078)
location: region:5613893-5668078:1
so has part: feature:5613893-5614022:1:exon
so has part: feature:5628660-5628831:1:exon
so has part: feature:5654259-5654437:1:exon
so has part: feature:5655632-5655711:1:exon
so has part: feature:5657515-5657592:1:exon
so has part: feature:5664836-5665012:1:exon
so has part: feature:5666156-5666233:1:exon
so has part: feature:5667917-5668078:1:exon

XP_005689323.1
type: Protein
SIO_000068: ncbiprotein

position:5613893:1
position: 5613893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5668078:1
position: 5668078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5613893-5614022:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5628660-5628831:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5654259-5654437:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5655632-5655711:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5657515-5657592:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5664836-5665012:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5666156-5666233:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5667917-5668078:1:exon

LOC108637508
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC108637508
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5654450..5662982)
location: region:5654450-5662982:-1
so has part: feature:5654450-5662982:-1:exon
subclass of: SO_0000011

108637508
type: Gene
SIO_000068: ncbigene

position:5654450:-1
position: 5654450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5662982:-1
position: 5662982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5654450-5662982:-1:exon

LOC108637508
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC108637508
product: uncharacterized LOC108637508
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_001919117.1
SIO_010081: LOC108637508
subclass of: SO_0000673
so part of: LOC108637508
location: complement(join(5654450..5654703,5654784..5654895,5661612..5662982))
location: region:5654450-5662982:-1
so has part: feature:5661612-5662982:-1:exon
so has part: feature:5654784-5654895:-1:exon
so has part: feature:5654450-5654703:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5661612-5662982:-1:exon

position:5661612:-1
position: 5661612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5654784-5654895:-1:exon

position:5654784:-1
position: 5654784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5654895:-1
position: 5654895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5654450-5654703:-1:exon

position:5654703:-1
position: 5654703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102173951
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102173951
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5713151..5729212)
location: region:5713151-5729212:-1
so has part: feature:5713151-5729212:-1:exon
subclass of: SO_0000010

102173951
type: Gene
SIO_000068: ncbigene

position:5713151:-1
position: 5713151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5729212:-1
position: 5729212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5713151-5729212:-1:exon

LOC102173951
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC102173951
product: solute carrier family 7 member 13
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_018058080.1
SIO_010081: LOC102173951
subclass of: SO_0000673
so part of: LOC102173951
location: complement(join(5713151..5713236,5722561..5722692,5728550..5729212))
location: region:5713151-5729212:-1
so has part: feature:5728550-5729212:-1:exon
so has part: feature:5722561-5722692:-1:exon
so has part: feature:5713151-5713236:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5728550-5729212:-1:exon

position:5728550:-1
position: 5728550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5722561-5722692:-1:exon

position:5722561:-1
position: 5722561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5722692:-1
position: 5722692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5713151-5713236:-1:exon

position:5713236:-1
position: 5713236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102173951
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC102173951
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(5728866..5728868),aa:OTHER)
product: LOW QUALITY PROTEIN: solute carrier family 7 member 13
translation: MDKERKIQLKRVFGCCWAXRFLIADITGADVFVALKGVLKSSCINPGLSLSIQVDWALWSFMTPLHSAEVGVTFPCSGACYCFLKRCFGNMISFLNLWTTFLGPGLTARQALLLAXYSIQPLYPRCSAPKLLKKCLALGILSSCGVREVTWLQIASMLLEMATLGLVSLSAVVLLVKVRKENLELFPNSFNAEFLEASQLTEAIFQGYFAYSGGGCFTYPAGELKKPRKTILKNIFPAFPLVTLVYLLVNISYLTVLTPKEILSSVAGPILRLNLAFARSHMAHKAQLYQDDL
SIO_010081: LOC102173951
subclass of: SO_0000673
so part of: LOC102173951
location: complement(join(5713151..5713236,5722561..5722692,5728550..5729212))
location: region:5713151-5729212:-1
so has part: feature:5728550-5729212:-1:exon
so has part: feature:5722561-5722692:-1:exon
so has part: feature:5713151-5713236:-1:exon

XP_017913569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5728550-5729212:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5722561-5722692:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5713151-5713236:-1:exon

LOC102173672
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102173672
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5806897..5816370
location: region:5806897-5816370:1
so has part: feature:5806897-5816370:1:exon

102173672
type: Gene
SIO_000068: ncbigene

position:5806897:1
position: 5806897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5816370:1
position: 5816370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5806897-5816370:1:exon

LOC102173672
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102173672
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102173672
subclass of: SO_0000673
so part of: LOC102173672
location: 5806897..5806901
location: region:5806897-5806901:1
so has part: feature:5806897-5806901:1:exon

position:5806901:1
position: 5806901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5806897-5806901:1:exon

LOC102173672
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102173672
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102173672
subclass of: SO_0000673
so part of: LOC102173672
location: 5815902..5816370
location: region:5815902-5816370:1
so has part: feature:5815902-5816370:1:exon

position:5815902:1
position: 5815902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5815902-5816370:1:exon

WWP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5830910..5981784
location: region:5830910-5981784:1
so has part: feature:5830910-5981784:1:exon
subclass of: SO_0000010

102171442
type: Gene
SIO_000068: ncbigene

position:5830910:1
position: 5830910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5981784:1
position: 5981784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5830910-5981784:1:exon

WWP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9925
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_001919118.1
SIO_010081: WWP1
so part of: WWP1
location: join(5830910..5831101,5856135..5856229,5872530..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904955..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5941188..5941247,5943548..5943707,5949662..5949795,5949885..5950025,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5981784)
location: region:5830910-5981784:1
so has part: feature:5830910-5831101:1:exon
so has part: feature:5856135-5856229:1:exon
so has part: feature:5872530-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904955-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5941188-5941247:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5981784:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5830910-5831101:1:exon

position:5831101:1
position: 5831101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5856135-5856229:1:exon

position:5856135:1
position: 5856135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5856229:1
position: 5856229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5872530-5872620:1:exon

position:5872530:1
position: 5872530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5872620:1
position: 5872620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5881560-5881698:1:exon

position:5881560:1
position: 5881560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5881698:1
position: 5881698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5882337-5882461:1:exon

position:5882337:1
position: 5882337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5882461:1
position: 5882461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5904728-5904865:1:exon

position:5904728:1
position: 5904728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5904865:1
position: 5904865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5904955-5905021:1:exon

position:5904955:1
position: 5904955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5905021:1
position: 5905021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5908451-5908632:1:exon

position:5908451:1
position: 5908451
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5908632:1
position: 5908632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5918995-5919331:1:exon

position:5918995:1
position: 5918995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5919331:1
position: 5919331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5925987-5926082:1:exon

position:5925987:1
position: 5925987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5926082:1
position: 5926082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5927472-5927646:1:exon

position:5927472:1
position: 5927472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5927646:1
position: 5927646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5929385-5929439:1:exon

position:5929385:1
position: 5929385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5929439:1
position: 5929439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5929524-5929608:1:exon

position:5929524:1
position: 5929524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5929608:1
position: 5929608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5929738-5929866:1:exon

position:5929738:1
position: 5929738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5929866:1
position: 5929866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5935572-5935647:1:exon

position:5935572:1
position: 5935572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5935647:1
position: 5935647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5935755-5935826:1:exon

position:5935755:1
position: 5935755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5935826:1
position: 5935826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5938843-5938931:1:exon

position:5938843:1
position: 5938843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5938931:1
position: 5938931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5941188-5941247:1:exon

position:5941188:1
position: 5941188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5941247:1
position: 5941247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5943548-5943707:1:exon

position:5943548:1
position: 5943548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5943707:1
position: 5943707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5949662-5949795:1:exon

position:5949662:1
position: 5949662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5949795:1
position: 5949795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5949885-5950025:1:exon

position:5949885:1
position: 5949885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5950025:1
position: 5950025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5958220-5958324:1:exon

position:5958220:1
position: 5958220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5958324:1
position: 5958324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5967873-5967969:1:exon

position:5967873:1
position: 5967873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5967969:1
position: 5967969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5968399-5968471:1:exon

position:5968399:1
position: 5968399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5968471:1
position: 5968471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5976696-5981784:1:exon

position:5976696:1
position: 5976696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 67 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_018058181.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: join(5830913..5831101,5856135..5856229,5872530..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904958..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5941188..5941247,5943548..5943707,5949662..5949795,5949885..5950025,5950742..5950862,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5981784)
location: region:5830913-5981784:1
so has part: feature:5830913-5831101:1:exon
so has part: feature:5856135-5856229:1:exon
so has part: feature:5872530-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904958-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5941188-5941247:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5950742-5950862:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5981784:1:exon

position:5830913:1
position: 5830913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5830913-5831101:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5856135-5856229:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5872530-5872620:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5881560-5881698:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5882337-5882461:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5904728-5904865:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5904958-5905021:1:exon

position:5904958:1
position: 5904958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5908451-5908632:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5918995-5919331:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5925987-5926082:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5927472-5927646:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5929385-5929439:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5929524-5929608:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5929738-5929866:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5935572-5935647:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5935755-5935826:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5938843-5938931:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5941188-5941247:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5943548-5943707:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5949662-5949795:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5949885-5950025:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5950742-5950862:1:exon

position:5950742:1
position: 5950742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5950862:1
position: 5950862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5958220-5958324:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5967873-5967969:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5968399-5968471:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5976696-5981784:1:exon

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 68 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_018058180.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: join(5830914..5831101,5856135..5856229,5872530..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904955..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5941188..5941247,5943548..5943707,5949662..5949795,5949885..5950025,5950742..5950862,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5981784)
location: region:5830914-5981784:1
so has part: feature:5830914-5831101:1:exon
so has part: feature:5856135-5856229:1:exon
so has part: feature:5872530-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904955-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5941188-5941247:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5950742-5950862:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5981784:1:exon

position:5830914:1
position: 5830914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5830914-5831101:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5856135-5856229:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5872530-5872620:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5881560-5881698:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5882337-5882461:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5904728-5904865:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5904955-5905021:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5908451-5908632:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5918995-5919331:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5925987-5926082:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5927472-5927646:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5929385-5929439:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5929524-5929608:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5929738-5929866:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5935572-5935647:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5935755-5935826:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5938843-5938931:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5941188-5941247:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5943548-5943707:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5949662-5949795:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5949885-5950025:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5950742-5950862:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5958220-5958324:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5967873-5967969:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5968399-5968471:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5976696-5981784:1:exon

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 34 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_018058182.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: join(5830915..5831101,5856135..5856229,5872530..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904955..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5943548..5943707,5949662..5949795,5949885..5950025,5950742..5950862,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5977385)
location: region:5830915-5977385:1
so has part: feature:5830915-5831101:1:exon
so has part: feature:5856135-5856229:1:exon
so has part: feature:5872530-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904955-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5950742-5950862:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5977385:1:exon

position:5830915:1
position: 5830915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5977385:1
position: 5977385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5830915-5831101:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5856135-5856229:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5872530-5872620:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5881560-5881698:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5882337-5882461:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5904728-5904865:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5904955-5905021:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5908451-5908632:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5918995-5919331:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5925987-5926082:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5927472-5927646:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5929385-5929439:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5929524-5929608:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5929738-5929866:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5935572-5935647:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5935755-5935826:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5938843-5938931:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5943548-5943707:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5949662-5949795:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5949885-5950025:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5950742-5950862:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5958220-5958324:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5967873-5967969:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5968399-5968471:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5976696-5977385:1:exon

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1
translation: MATASPRSDTSNNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVAADGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATVDLKQALLIHNRKLEKVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNSSSSPAIEVQQNGDALHEDREPSARTTTRLAAEDTNGIDNHVPTNTVVQNSCCSSVINGDSTPSPSQVAARPKNTPAPKPLTSEPANDTVNGDSPSSAPTENASSTGTAIGSGEPALSSNCTSTPVEDPPVQETLTSSENNECIVSNSAAFGSEARSTLDPSTSNSASSSAFEAAKLRQPDGCMEPVRQQSGGANTETLPSGWEQRRDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLARSLNLFSVPFVPFFFRNLSHGEWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: join(5872551..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904955..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5941188..5941247,5943548..5943707,5949662..5949795,5949885..5950025,5950742..5950862,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5976795)
location: region:5872551-5976795:1
so has part: feature:5872551-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904955-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5941188-5941247:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5950742-5950862:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5976795:1:exon

XP_017913669.1
type: Protein
SIO_000068: ncbiprotein

position:5872551:1
position: 5872551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5976795:1
position: 5976795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5872551-5872620:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5881560-5881698:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5882337-5882461:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5904728-5904865:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5904955-5905021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5908451-5908632:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5918995-5919331:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5925987-5926082:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5927472-5927646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5929385-5929439:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5929524-5929608:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5929738-5929866:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5935572-5935647:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5935755-5935826:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5938843-5938931:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5941188-5941247:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5943548-5943707:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5949662-5949795:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5949885-5950025:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5950742-5950862:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5958220-5958324:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5967873-5967969:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5968399-5968471:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5976696-5976795:1:exon

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X3
translation: MATASPRSDTSNNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVAADGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATVDLKQALLIHNRKLEKVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNSSSSPAIEVQQNGDALHEDREPSARTTTRLAAEDTNGIDNHVPTNTVVQNSCCSSVINGDSTPSPSQVAARPKNTPAPKPLTSEPANDTVNGDSPSSAPTENASSTGTAIGSGEPALSSNCTSTPVEDPPVQETLTSSENNECIVSNSAAFGSEARSTLDPSTSNSASSSAFEAAKLRQPDGCMEPVRQQSGGANTETLPSGWEQRRDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: join(5872551..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904955..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5943548..5943707,5949662..5949795,5949885..5950025,5950742..5950862,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5976795)
location: region:5872551-5976795:1
so has part: feature:5872551-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904955-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5950742-5950862:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5976795:1:exon

XP_017913671.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5872551-5872620:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5881560-5881698:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5882337-5882461:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5904728-5904865:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5904955-5905021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5908451-5908632:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5918995-5919331:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5925987-5926082:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5927472-5927646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5929385-5929439:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5929524-5929608:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5929738-5929866:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5935572-5935647:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5935755-5935826:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5938843-5938931:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5943548-5943707:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5949662-5949795:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5949885-5950025:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5950742-5950862:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5958220-5958324:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5967873-5967969:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5968399-5968471:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5976696-5976795:1:exon

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X2
translation: MATASPRSDTSNNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVAADGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATVDLKQALLIHNRKLEKVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNSSSSPAKVQQNGDALHEDREPSARTTTRLAAEDTNGIDNHVPTNTVVQNSCCSSVINGDSTPSPSQVAARPKNTPAPKPLTSEPANDTVNGDSPSSAPTENASSTGTAIGSGEPALSSNCTSTPVEDPPVQETLTSSENNECIVSNSAAFGSEARSTLDPSTSNSASSSAFEAAKLRQPDGCMEPVRQQSGGANTETLPSGWEQRRDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLARSLNLFSVPFVPFFFRNLSHGEWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: join(5872551..5872620,5881560..5881698,5882337..5882461,5904728..5904865,5904958..5905021,5908451..5908632,5918995..5919331,5925987..5926082,5927472..5927646,5929385..5929439,5929524..5929608,5929738..5929866,5935572..5935647,5935755..5935826,5938843..5938931,5941188..5941247,5943548..5943707,5949662..5949795,5949885..5950025,5950742..5950862,5958220..5958324,5967873..5967969,5968399..5968471,5976696..5976795)
location: region:5872551-5976795:1
so has part: feature:5872551-5872620:1:exon
so has part: feature:5881560-5881698:1:exon
so has part: feature:5882337-5882461:1:exon
so has part: feature:5904728-5904865:1:exon
so has part: feature:5904958-5905021:1:exon
so has part: feature:5908451-5908632:1:exon
so has part: feature:5918995-5919331:1:exon
so has part: feature:5925987-5926082:1:exon
so has part: feature:5927472-5927646:1:exon
so has part: feature:5929385-5929439:1:exon
so has part: feature:5929524-5929608:1:exon
so has part: feature:5929738-5929866:1:exon
so has part: feature:5935572-5935647:1:exon
so has part: feature:5935755-5935826:1:exon
so has part: feature:5938843-5938931:1:exon
so has part: feature:5941188-5941247:1:exon
so has part: feature:5943548-5943707:1:exon
so has part: feature:5949662-5949795:1:exon
so has part: feature:5949885-5950025:1:exon
so has part: feature:5950742-5950862:1:exon
so has part: feature:5958220-5958324:1:exon
so has part: feature:5967873-5967969:1:exon
so has part: feature:5968399-5968471:1:exon
so has part: feature:5976696-5976795:1:exon

XP_017913670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5872551-5872620:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5881560-5881698:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5882337-5882461:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5904728-5904865:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5904958-5905021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5908451-5908632:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5918995-5919331:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5925987-5926082:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5927472-5927646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5929385-5929439:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5929524-5929608:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5929738-5929866:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5935572-5935647:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5935755-5935826:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5938843-5938931:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5941188-5941247:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5943548-5943707:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5949662-5949795:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5949885-5950025:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5950742-5950862:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5958220-5958324:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5967873-5967969:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5968399-5968471:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5976696-5976795:1:exon

LOC108637509
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC108637509
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5971465..5972141)
location: region:5971465-5972141:-1
so has part: feature:5971465-5972141:-1:exon
subclass of: SO_0000011

108637509
type: Gene
SIO_000068: ncbigene

position:5971465:-1
position: 5971465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5972141:-1
position: 5972141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5971465-5972141:-1:exon

LOC108637509
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9925
nc RNA class: lncRNA
gene: LOC108637509
product: uncharacterized LOC108637509
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_001919119.1
SIO_010081: LOC108637509
subclass of: SO_0000673
so part of: LOC108637509
location: complement(join(5971465..5971666,5971756..5972141))
location: region:5971465-5972141:-1
so has part: feature:5971756-5972141:-1:exon
so has part: feature:5971465-5971666:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5971756-5972141:-1:exon

position:5971756:-1
position: 5971756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5971465-5971666:-1:exon

position:5971666:-1
position: 5971666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RMDN1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5982539..6015807)
location: region:5982539-6015807:-1
so has part: feature:5982539-6015807:-1:exon
subclass of: SO_0000010

102172081
type: Gene
SIO_000068: ncbigene

position:5982539:-1
position: 5982539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6015807:-1
position: 6015807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5982539-6015807:-1:exon

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_005689265.3
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: complement(join(5982539..5982663,5983230..5983363,5986537..5986567,5987750..5987837,5989264..5989319,5994453..5994612,5997178..5997274,5997589..5997706,6015604..6015807))
location: region:5982539-6015807:-1
so has part: feature:6015604-6015807:-1:exon
so has part: feature:5997589-5997706:-1:exon
so has part: feature:5997178-5997274:-1:exon
so has part: feature:5994453-5994612:-1:exon
so has part: feature:5989264-5989319:-1:exon
so has part: feature:5987750-5987837:-1:exon
so has part: feature:5986537-5986567:-1:exon
so has part: feature:5983230-5983363:-1:exon
so has part: feature:5982539-5982663:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6015604-6015807:-1:exon

position:6015604:-1
position: 6015604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5997589-5997706:-1:exon

position:5997589:-1
position: 5997589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5997706:-1
position: 5997706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5997178-5997274:-1:exon

position:5997178:-1
position: 5997178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5997274:-1
position: 5997274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5994453-5994612:-1:exon

position:5994453:-1
position: 5994453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5994612:-1
position: 5994612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5989264-5989319:-1:exon

position:5989264:-1
position: 5989264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5989319:-1
position: 5989319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5987750-5987837:-1:exon

position:5987750:-1
position: 5987750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5987837:-1
position: 5987837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5986537-5986567:-1:exon

position:5986537:-1
position: 5986537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5986567:-1
position: 5986567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5983230-5983363:-1:exon

position:5983230:-1
position: 5983230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5983363:-1
position: 5983363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5982539-5982663:-1:exon

position:5982663:-1
position: 5982663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 22 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_005689264.2
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: complement(join(5982539..5982663,5983230..5983363,5986537..5986567,5987750..5987837,5989264..5989319,5992426..5992515,5994453..5994612,5997178..5997274,5997589..5997706,6015604..6015806))
location: region:5982539-6015806:-1
so has part: feature:6015604-6015806:-1:exon
so has part: feature:5997589-5997706:-1:exon
so has part: feature:5997178-5997274:-1:exon
so has part: feature:5994453-5994612:-1:exon
so has part: feature:5992426-5992515:-1:exon
so has part: feature:5989264-5989319:-1:exon
so has part: feature:5987750-5987837:-1:exon
so has part: feature:5986537-5986567:-1:exon
so has part: feature:5983230-5983363:-1:exon
so has part: feature:5982539-5982663:-1:exon

position:6015806:-1
position: 6015806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6015604-6015806:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5997589-5997706:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5997178-5997274:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5994453-5994612:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5992426-5992515:-1:exon

position:5992426:-1
position: 5992426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5992515:-1
position: 5992515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5989264-5989319:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5987750-5987837:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5986537-5986567:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5983230-5983363:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5982539-5982663:-1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X2
translation: MALAARPWRLLPVGCSAARGLRLPAGAAGSRGQRIPWRLGASEVMGNSGTCKRSLLFSALSYLGFETYQVISQAVLVHAAAKVFKIEEVLEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLRGTSEEEKKFLVYEALEYAKRALEKNESSFAAHKKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKVLFATPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDKQIQTEAAQLLTGFSDKN
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: complement(join(5982613..5982663,5983230..5983363,5986537..5986567,5987750..5987837,5989264..5989319,5994453..5994612,5997178..5997274,5997589..5997706,6015604..6015732))
location: region:5982613-6015732:-1
so has part: feature:6015604-6015732:-1:exon
so has part: feature:5997589-5997706:-1:exon
so has part: feature:5997178-5997274:-1:exon
so has part: feature:5994453-5994612:-1:exon
so has part: feature:5989264-5989319:-1:exon
so has part: feature:5987750-5987837:-1:exon
so has part: feature:5986537-5986567:-1:exon
so has part: feature:5983230-5983363:-1:exon
so has part: feature:5982613-5982663:-1:exon

XP_005689322.1
type: Protein
SIO_000068: ncbiprotein

position:5982613:-1
position: 5982613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6015732:-1
position: 6015732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6015604-6015732:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5997589-5997706:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5997178-5997274:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5994453-5994612:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5989264-5989319:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5987750-5987837:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5986537-5986567:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5983230-5983363:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5982613-5982663:-1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X1
translation: MALAARPWRLLPVGCSAARGLRLPAGAAGSRGQRIPWRLGASEVMGNSGTCKRSLLFSALSYLGFETYQVISQAVLVHAAAKVFKIEEVLEQADYLYESGETEKLYQLLTQYKESEDAELLWRLARASRDVAQLRGTSEEEKKFLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANAYIIKEHFEKAIELNPKDATSIHLMGIWCYTFAEMPWYQRRIAKVLFATPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLHNKKLAAFWLTKAKDYPAHTEEDKQIQTEAAQLLTGFSDKN
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: complement(join(5982613..5982663,5983230..5983363,5986537..5986567,5987750..5987837,5989264..5989319,5992426..5992515,5994453..5994612,5997178..5997274,5997589..5997706,6015604..6015732))
location: region:5982613-6015732:-1
so has part: feature:6015604-6015732:-1:exon
so has part: feature:5997589-5997706:-1:exon
so has part: feature:5997178-5997274:-1:exon
so has part: feature:5994453-5994612:-1:exon
so has part: feature:5992426-5992515:-1:exon
so has part: feature:5989264-5989319:-1:exon
so has part: feature:5987750-5987837:-1:exon
so has part: feature:5986537-5986567:-1:exon
so has part: feature:5983230-5983363:-1:exon
so has part: feature:5982613-5982663:-1:exon

XP_005689321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6015604-6015732:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5997589-5997706:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5997178-5997274:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5994453-5994612:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5992426-5992515:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5989264-5989319:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5987750-5987837:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5986537-5986567:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5983230-5983363:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5982613-5982663:-1:exon

CPNE3
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: CPNE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6027723..6076067
location: region:6027723-6076067:1
so has part: feature:6027723-6076067:1:exon
subclass of: SO_0000010

102171172
type: Gene
SIO_000068: ncbigene

position:6027723:1
position: 6027723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6076067:1
position: 6076067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6027723-6076067:1:exon

CPNE3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: CPNE3
product: copine 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 77 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_018058184.1
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: join(6027723..6027835,6041474..6041613,6041885..6042064,6043604..6043678,6044914..6044985,6049939..6050022,6051713..6051802,6056096..6056194,6059317..6059403,6060075..6060134,6060675..6060808,6065671..6065725,6065808..6065859,6069077..6069210,6070221..6070457,6072907..6076067)
location: region:6027723-6076067:1
so has part: feature:6027723-6027835:1:exon
so has part: feature:6041474-6041613:1:exon
so has part: feature:6041885-6042064:1:exon
so has part: feature:6043604-6043678:1:exon
so has part: feature:6044914-6044985:1:exon
so has part: feature:6049939-6050022:1:exon
so has part: feature:6051713-6051802:1:exon
so has part: feature:6056096-6056194:1:exon
so has part: feature:6059317-6059403:1:exon
so has part: feature:6060075-6060134:1:exon
so has part: feature:6060675-6060808:1:exon
so has part: feature:6065671-6065725:1:exon
so has part: feature:6065808-6065859:1:exon
so has part: feature:6069077-6069210:1:exon
so has part: feature:6070221-6070457:1:exon
so has part: feature:6072907-6076067:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6027723-6027835:1:exon

position:6027835:1
position: 6027835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6041474-6041613:1:exon

position:6041474:1
position: 6041474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6041613:1
position: 6041613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6041885-6042064:1:exon

position:6041885:1
position: 6041885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6042064:1
position: 6042064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6043604-6043678:1:exon

position:6043604:1
position: 6043604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6043678:1
position: 6043678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6044914-6044985:1:exon

position:6044914:1
position: 6044914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6044985:1
position: 6044985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6049939-6050022:1:exon

position:6049939:1
position: 6049939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6050022:1
position: 6050022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6051713-6051802:1:exon

position:6051713:1
position: 6051713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6051802:1
position: 6051802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6056096-6056194:1:exon

position:6056096:1
position: 6056096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6056194:1
position: 6056194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6059317-6059403:1:exon

position:6059317:1
position: 6059317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6059403:1
position: 6059403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6060075-6060134:1:exon

position:6060075:1
position: 6060075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6060134:1
position: 6060134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6060675-6060808:1:exon

position:6060675:1
position: 6060675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6060808:1
position: 6060808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6065671-6065725:1:exon

position:6065671:1
position: 6065671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6065725:1
position: 6065725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6065808-6065859:1:exon

position:6065808:1
position: 6065808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6065859:1
position: 6065859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6069077-6069210:1:exon

position:6069077:1
position: 6069077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6069210:1
position: 6069210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6070221-6070457:1:exon

position:6070221:1
position: 6070221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6070457:1
position: 6070457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6072907-6076067:1:exon

position:6072907:1
position: 6072907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CPNE3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: CPNE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: copine-3
translation: MAAQCVTKVELNISCDNLLDKDIGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRIVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVVKNNLNPVWKPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRNSPVEFECINEKKRQKKKSYKNSGVISVKQCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPRSPNSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPINFNPSNPYCNGVQGIIEAYRACLPQIRLYGPTNFSPIINHVARFAAAATQQRTASQYFVLLIITDGVITDLNETRQAIVNAAKLPMSIIIVGVGGADFGAMEFLDGDGGSLRSPTGEVAVRDIVQFVPFRQFQNAPKEALAQSVLAEVPQQVVGYFNTYKLLPPKNPATK
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: join(6041482..6041613,6041885..6042064,6043604..6043678,6044914..6044985,6049939..6050022,6051713..6051802,6056096..6056194,6059317..6059403,6060075..6060134,6060675..6060808,6065671..6065725,6065808..6065859,6069077..6069210,6070221..6070457,6072907..6073017)
location: region:6041482-6073017:1
so has part: feature:6041482-6041613:1:exon
so has part: feature:6041885-6042064:1:exon
so has part: feature:6043604-6043678:1:exon
so has part: feature:6044914-6044985:1:exon
so has part: feature:6049939-6050022:1:exon
so has part: feature:6051713-6051802:1:exon
so has part: feature:6056096-6056194:1:exon
so has part: feature:6059317-6059403:1:exon
so has part: feature:6060075-6060134:1:exon
so has part: feature:6060675-6060808:1:exon
so has part: feature:6065671-6065725:1:exon
so has part: feature:6065808-6065859:1:exon
so has part: feature:6069077-6069210:1:exon
so has part: feature:6070221-6070457:1:exon
so has part: feature:6072907-6073017:1:exon

XP_017913673.1
type: Protein
SIO_000068: ncbiprotein

position:6041482:1
position: 6041482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6073017:1
position: 6073017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6041482-6041613:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6041885-6042064:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6043604-6043678:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6044914-6044985:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6049939-6050022:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6051713-6051802:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6056096-6056194:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6059317-6059403:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6060075-6060134:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6060675-6060808:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6065671-6065725:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6065808-6065859:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6069077-6069210:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6070221-6070457:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6072907-6073017:1:exon

CNGB3
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: CNGB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6094387..6277942)
location: region:6094387-6277942:-1
so has part: feature:6094387-6277942:-1:exon
subclass of: SO_0000010

102170891
type: Gene
SIO_000068: ncbigene

position:6094387:-1
position: 6094387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6277942:-1
position: 6277942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6094387-6277942:-1:exon

CNGB3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: CNGB3
product: cyclic nucleotide gated channel beta 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 5% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005689259.2
SIO_010081: CNGB3
subclass of: SO_0000673
so part of: CNGB3
location: complement(join(6094387..6094644,6097171..6097345,6097587..6097733,6123165..6123283,6130642..6130725,6149135..6149232,6151163..6151322,6156742..6156883,6169398..6169520,6170258..6170322,6173680..6173766,6177850..6177900,6184005..6184213,6185086..6185214,6186240..6186376,6257623..6257749,6273824..6273905,6277832..6277942))
location: region:6094387-6277942:-1
so has part: feature:6277832-6277942:-1:exon
so has part: feature:6273824-6273905:-1:exon
so has part: feature:6257623-6257749:-1:exon
so has part: feature:6186240-6186376:-1:exon
so has part: feature:6185086-6185214:-1:exon
so has part: feature:6184005-6184213:-1:exon
so has part: feature:6177850-6177900:-1:exon
so has part: feature:6173680-6173766:-1:exon
so has part: feature:6170258-6170322:-1:exon
so has part: feature:6169398-6169520:-1:exon
so has part: feature:6156742-6156883:-1:exon
so has part: feature:6151163-6151322:-1:exon
so has part: feature:6149135-6149232:-1:exon
so has part: feature:6130642-6130725:-1:exon
so has part: feature:6123165-6123283:-1:exon
so has part: feature:6097587-6097733:-1:exon
so has part: feature:6097171-6097345:-1:exon
so has part: feature:6094387-6094644:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6277832-6277942:-1:exon

position:6277832:-1
position: 6277832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6273824-6273905:-1:exon

position:6273824:-1
position: 6273824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6273905:-1
position: 6273905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6257623-6257749:-1:exon

position:6257623:-1
position: 6257623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6257749:-1
position: 6257749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6186240-6186376:-1:exon

position:6186240:-1
position: 6186240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6186376:-1
position: 6186376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6185086-6185214:-1:exon

position:6185086:-1
position: 6185086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6185214:-1
position: 6185214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6184005-6184213:-1:exon

position:6184005:-1
position: 6184005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6184213:-1
position: 6184213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6177850-6177900:-1:exon

position:6177850:-1
position: 6177850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6177900:-1
position: 6177900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6173680-6173766:-1:exon

position:6173680:-1
position: 6173680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6173766:-1
position: 6173766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6170258-6170322:-1:exon

position:6170258:-1
position: 6170258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6170322:-1
position: 6170322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6169398-6169520:-1:exon

position:6169398:-1
position: 6169398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6169520:-1
position: 6169520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6156742-6156883:-1:exon

position:6156742:-1
position: 6156742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6156883:-1
position: 6156883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6151163-6151322:-1:exon

position:6151163:-1
position: 6151163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6151322:-1
position: 6151322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6149135-6149232:-1:exon

position:6149135:-1
position: 6149135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6149232:-1
position: 6149232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6130642-6130725:-1:exon

position:6130642:-1
position: 6130642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6130725:-1
position: 6130725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6123165-6123283:-1:exon

position:6123165:-1
position: 6123165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6123283:-1
position: 6123283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6097587-6097733:-1:exon

position:6097587:-1
position: 6097587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6097733:-1
position: 6097733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6097171-6097345:-1:exon

position:6097171:-1
position: 6097171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6097345:-1
position: 6097345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6094387-6094644:-1:exon

position:6094644:-1
position: 6094644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CNGB3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: CNGB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic nucleotide-gated cation channel beta-3
translation: MLKSLTIKFNKVKPSEGSNENIQDPDPSSESRQATGQGENKNEKKSLKTKMPPVSAEESQTKIQDKVSEKNTHEDKTTNPDSQNPTASTGAKPEQKEMGTGKEDPVSKPPVINEYADAQLHSLVRRLRQRTDFYKRKLVEADMSSPESSPQTAKPIAVSSTQESSAKLKEEHSQKVPLIEYLKRLRLPKSIDSYTDRFYLLWLSLVTIAFNWNCWFIPLRMVFPYQTPHNTHYWLITDLVCDTIYLFDLLLIQPRLQFMRGGDIIVDSNELKRHYRNSTKFQLDMASIMPFDVFYLFFGFNPIFRTNRMLKYTSFFEFNHHLESIMNKAYIYRVIRTTGYLLFTLHINACMYYWASSYEGIGSTRWVYDGEGNKYLRCYYWAVRTLITIGGLPEPQTLFEIVFQLLNFFSGVFVFSSLIGQMQDVIGAATANQNNFRICMDHTIAYMNTYSIPKIVQNRVRTWYEYTWASQRMLDESDLLETLPTTMQLALTVDVNFSVISKVDLFKGCDTQMIYDMLLRLKSIVYLPGDFVCKKGEIGKEMYIIKQGEVQVLGGADGTQVLVTLKAGAVFGEISLLAARGGNRRTANVVAHGFANLLTLDKKTLQEILVHYPDSEKLLMKKARVLLKNKAPGTGATPPNKGLAFLFPPKQETPKMFKALLGSSGKAGLARLLTLKREQTAQRKDENQEEEDKGKESEDKGRATAEKPLEASKCQTSSITAEEAPQAIRKAVLPRGTTRQSLIISMAPSAEAGEEVLTIEVKEKAKQ
SIO_010081: CNGB3
subclass of: SO_0000673
so part of: CNGB3
location: complement(join(6094387..6094644,6097171..6097345,6097587..6097733,6123165..6123283,6130642..6130725,6149135..6149232,6151163..6151322,6156742..6156883,6169398..6169520,6170258..6170322,6173680..6173766,6177850..6177900,6184005..6184213,6185086..6185214,6186240..6186376,6257623..6257749,6273824..6273905,6277832..6277942))
location: region:6094387-6277942:-1
so has part: feature:6277832-6277942:-1:exon
so has part: feature:6273824-6273905:-1:exon
so has part: feature:6257623-6257749:-1:exon
so has part: feature:6186240-6186376:-1:exon
so has part: feature:6185086-6185214:-1:exon
so has part: feature:6184005-6184213:-1:exon
so has part: feature:6177850-6177900:-1:exon
so has part: feature:6173680-6173766:-1:exon
so has part: feature:6170258-6170322:-1:exon
so has part: feature:6169398-6169520:-1:exon
so has part: feature:6156742-6156883:-1:exon
so has part: feature:6151163-6151322:-1:exon
so has part: feature:6149135-6149232:-1:exon
so has part: feature:6130642-6130725:-1:exon
so has part: feature:6123165-6123283:-1:exon
so has part: feature:6097587-6097733:-1:exon
so has part: feature:6097171-6097345:-1:exon
so has part: feature:6094387-6094644:-1:exon

XP_005689316.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6277832-6277942:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6273824-6273905:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6257623-6257749:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6186240-6186376:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6185086-6185214:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6184005-6184213:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6177850-6177900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6173680-6173766:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6170258-6170322:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6169398-6169520:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6156742-6156883:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6151163-6151322:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6149135-6149232:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6130642-6130725:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6123165-6123283:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6097587-6097733:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6097171-6097345:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6094387-6094644:-1:exon

CNBD1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: CNBD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6412363..6818038
location: region:6412363-6818038:1
so has part: feature:6412363-6818038:1:exon
subclass of: SO_0000010

102173401
type: Gene
SIO_000068: ncbigene

position:6412363:1
position: 6412363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6818038:1
position: 6818038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6412363-6818038:1:exon

CNBD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: CNBD1
product: cyclic nucleotide binding domain containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_018058081.1
SIO_010081: CNBD1
subclass of: SO_0000673
so part of: CNBD1
location: join(6412363..6412450,6435082..6435154,6461811..6461918,6484213..6484371,6681254..6681399,6692128..6692284,6699482..6699495,6712452..6712465,6756538..6756546,6758482..6758619,6760906..6761038,6814289..6814398,6816969..6817219,6818017..6818038)
location: region:6412363-6818038:1
so has part: feature:6412363-6412450:1:exon
so has part: feature:6435082-6435154:1:exon
so has part: feature:6461811-6461918:1:exon
so has part: feature:6484213-6484371:1:exon
so has part: feature:6681254-6681399:1:exon
so has part: feature:6692128-6692284:1:exon
so has part: feature:6699482-6699495:1:exon
so has part: feature:6712452-6712465:1:exon
so has part: feature:6756538-6756546:1:exon
so has part: feature:6758482-6758619:1:exon
so has part: feature:6760906-6761038:1:exon
so has part: feature:6814289-6814398:1:exon
so has part: feature:6816969-6817219:1:exon
so has part: feature:6818017-6818038:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6412363-6412450:1:exon

position:6412450:1
position: 6412450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6435082-6435154:1:exon

position:6435082:1
position: 6435082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6435154:1
position: 6435154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6461811-6461918:1:exon

position:6461811:1
position: 6461811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6461918:1
position: 6461918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6484213-6484371:1:exon

position:6484213:1
position: 6484213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6484371:1
position: 6484371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6681254-6681399:1:exon

position:6681254:1
position: 6681254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6681399:1
position: 6681399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6692128-6692284:1:exon

position:6692128:1
position: 6692128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6692284:1
position: 6692284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6699482-6699495:1:exon

position:6699482:1
position: 6699482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6699495:1
position: 6699495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6712452-6712465:1:exon

position:6712452:1
position: 6712452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6712465:1
position: 6712465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6756538-6756546:1:exon

position:6756538:1
position: 6756538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6756546:1
position: 6756546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6758482-6758619:1:exon

position:6758482:1
position: 6758482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6758619:1
position: 6758619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6760906-6761038:1:exon

position:6760906:1
position: 6760906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6761038:1
position: 6761038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6814289-6814398:1:exon

position:6814289:1
position: 6814289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6814398:1
position: 6814398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6816969-6817219:1:exon

position:6816969:1
position: 6816969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6817219:1
position: 6817219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6818017-6818038:1:exon

position:6818017:1
position: 6818017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CNBD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: CNBD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic nucleotide-binding domain-containing protein 1
translation: MPMSSLPAAILSHMIAVSNVPPPPLRSIPNLQKSKNIDYGELNALCHMRGKQHSRTNILSAHNVFMKQYPKIFVQKKVRLPKLFKEEEKRIPAEVTEESKPPQPDDSHNIAIHVKKARGGRTLYGPKKYEETVVQFMAILKKLPIHRTPFEHNIVWKMLKTIPDLTSQLLDEHLKILSKNVISETWIKGSTVIGNDGFYIILKGLARPQTQIYKNLIEEHDSTTSFIPQSFHSFVFSEDIRNPLLARLYLPSYDEMLGQWSTFGTLEVAAHIEPETKEYSVVTEEDCEILKIPANNYAKLKTEKTKLENQHKVKLIHKCPYYVEWPTLSIYELVTFTKWKKFPPGHVIVESGNIISFVAYINSGYCKIYRNIIGFTKLQSRKVKKIQKHVYMGRLNEKESFGEISVLLQVPFTCTIVTGEDVEMAIIEDKDLHGKYITAFYFNCSAILFDKFLIRVVVFHRQIRILRPLQSVE
SIO_010081: CNBD1
subclass of: SO_0000673
so part of: CNBD1
location: join(6412363..6412450,6435082..6435154,6461811..6461918,6484213..6484371,6681254..6681399,6692128..6692284,6699482..6699495,6712452..6712465,6756538..6756546,6758482..6758619,6760906..6761038,6814289..6814398,6816969..6817219,6818017..6818038)
location: region:6412363-6818038:1
so has part: feature:6412363-6412450:1:exon
so has part: feature:6435082-6435154:1:exon
so has part: feature:6461811-6461918:1:exon
so has part: feature:6484213-6484371:1:exon
so has part: feature:6681254-6681399:1:exon
so has part: feature:6692128-6692284:1:exon
so has part: feature:6699482-6699495:1:exon
so has part: feature:6712452-6712465:1:exon
so has part: feature:6756538-6756546:1:exon
so has part: feature:6758482-6758619:1:exon
so has part: feature:6760906-6761038:1:exon
so has part: feature:6814289-6814398:1:exon
so has part: feature:6816969-6817219:1:exon
so has part: feature:6818017-6818038:1:exon

XP_017913570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6412363-6412450:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6435082-6435154:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6461811-6461918:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6484213-6484371:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6681254-6681399:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6692128-6692284:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6699482-6699495:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6712452-6712465:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6756538-6756546:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6758482-6758619:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6760906-6761038:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6814289-6814398:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6816969-6817219:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6818017-6818038:1:exon

TRNAW-CCA
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TRNAW-CCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 6493295..6493366
location: region:6493295-6493366:1
so has part: feature:6493295-6493366:1:exon
subclass of: SO_0000663

108637553
type: Gene
SIO_000068: ncbigene

position:6493295:1
position: 6493295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6493366:1
position: 6493366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6493295-6493366:1:exon

TRNAW-CCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9925
gene: TRNAW-CCA
product: tRNA-Trp
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA tryptophan (anticodon CCA); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:6493328..6493330,aa:Trp,seq:cca)
SIO_010081: TRNAW-CCA
subclass of: SO_0000673
so part of: TRNAW-CCA
location: 6493295..6493366
location: region:6493295-6493366:1
so has part: feature:6493295-6493366:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6493295-6493366:1:exon

LOC102179865
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102179865
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(6651613..6652358)
location: region:6651613-6652358:-1
so has part: feature:6651613-6652358:-1:exon

102179865
type: Gene
SIO_000068: ncbigene

position:6651613:-1
position: 6651613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6652358:-1
position: 6652358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6651613-6652358:-1:exon

LOC102179865
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102179865
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
pseudo: true
SIO_010081: LOC102179865
subclass of: SO_0000673
so part of: LOC102179865
location: complement(6651613..6652358)
location: region:6651613-6652358:-1
so has part: feature:6651613-6652358:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6651613-6652358:-1:exon

LOC102170618
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102170618
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7223810..7229014)
location: region:7223810-7229014:-1
so has part: feature:7223810-7229014:-1:exon

102170618
type: Gene
SIO_000068: ncbigene

position:7223810:-1
position: 7223810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7229014:-1
position: 7229014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7223810-7229014:-1:exon

LOC102170618
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170618
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170618
subclass of: SO_0000673
so part of: LOC102170618
location: complement(7223810..7223881)
location: region:7223810-7223881:-1
so has part: feature:7223810-7223881:-1:exon

position:7223881:-1
position: 7223881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7223810-7223881:-1:exon

LOC102170618
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170618
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170618
subclass of: SO_0000673
so part of: LOC102170618
location: complement(7224094..7225357)
location: region:7224094-7225357:-1
so has part: feature:7224094-7225357:-1:exon

position:7224094:-1
position: 7224094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7225357:-1
position: 7225357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7224094-7225357:-1:exon

LOC102170618
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170618
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170618
subclass of: SO_0000673
so part of: LOC102170618
location: complement(7226852..7227679)
location: region:7226852-7227679:-1
so has part: feature:7226852-7227679:-1:exon

position:7226852:-1
position: 7226852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7227679:-1
position: 7227679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7226852-7227679:-1:exon

LOC102170618
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170618
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170618
subclass of: SO_0000673
so part of: LOC102170618
location: complement(7228863..7229014)
location: region:7228863-7229014:-1
so has part: feature:7228863-7229014:-1:exon

position:7228863:-1
position: 7228863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7228863-7229014:-1:exon

MMP16
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: MMP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7457318..7839869)
location: region:7457318-7839869:-1
so has part: feature:7457318-7839869:-1:exon
subclass of: SO_0000010

102170337
type: Gene
SIO_000068: ncbigene

position:7457318:-1
position: 7457318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7839869:-1
position: 7839869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7457318-7839869:-1:exon

MMP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: MMP16
product: matrix metallopeptidase 16
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 12 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005689258.3
SIO_010081: MMP16
subclass of: SO_0000673
so part of: MMP16
location: complement(join(7457318..7459817,7466019..7466134,7475935..7476085,7503958..7504096,7559097..7559308,7561581..7561742,7613941..7614245,7635146..7635268,7653632..7653780,7839430..7839869))
location: region:7457318-7839869:-1
so has part: feature:7839430-7839869:-1:exon
so has part: feature:7653632-7653780:-1:exon
so has part: feature:7635146-7635268:-1:exon
so has part: feature:7613941-7614245:-1:exon
so has part: feature:7561581-7561742:-1:exon
so has part: feature:7559097-7559308:-1:exon
so has part: feature:7503958-7504096:-1:exon
so has part: feature:7475935-7476085:-1:exon
so has part: feature:7466019-7466134:-1:exon
so has part: feature:7457318-7459817:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7839430-7839869:-1:exon

position:7839430:-1
position: 7839430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7653632-7653780:-1:exon

position:7653632:-1
position: 7653632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7653780:-1
position: 7653780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7635146-7635268:-1:exon

position:7635146:-1
position: 7635146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7635268:-1
position: 7635268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7613941-7614245:-1:exon

position:7613941:-1
position: 7613941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7614245:-1
position: 7614245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7561581-7561742:-1:exon

position:7561581:-1
position: 7561581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7561742:-1
position: 7561742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7559097-7559308:-1:exon

position:7559097:-1
position: 7559097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7559308:-1
position: 7559308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7503958-7504096:-1:exon

position:7503958:-1
position: 7503958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7504096:-1
position: 7504096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7475935-7476085:-1:exon

position:7475935:-1
position: 7475935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7476085:-1
position: 7476085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:7466019-7466134:-1:exon

position:7466019:-1
position: 7466019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7466134:-1
position: 7466134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:7457318-7459817:-1:exon

position:7459817:-1
position: 7459817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MMP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: MMP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: matrix metalloproteinase-16
translation: MSVLTSSTGRRLDFVHHSGILYLQTLLWILCATVCGTEQYFNVEVWLQKYGYLPPSDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKRPRCGVPDQTRGSSRFNIRRKRYALTGQKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPSDDLQGIQKIYGPPDKIAPPTRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGNFNTLAILRREMFVFKDQWFWRVRNHRVMDGYPMQITYFWRGLPPSIDAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLITLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGCDGPTDREKEGHSPPDDVDIVIKLDNTASTVKAIAIVIPCILALCLLVLVYTVLQFKRKGTPRHILYCKRSMQEWV
SIO_010081: MMP16
subclass of: SO_0000673
so part of: MMP16
location: complement(join(7459483..7459817,7466019..7466134,7475935..7476085,7503958..7504096,7559097..7559308,7561581..7561742,7613941..7614245,7635146..7635268,7653632..7653780,7839430..7839561))
location: region:7459483-7839561:-1
so has part: feature:7839430-7839561:-1:exon
so has part: feature:7653632-7653780:-1:exon
so has part: feature:7635146-7635268:-1:exon
so has part: feature:7613941-7614245:-1:exon
so has part: feature:7561581-7561742:-1:exon
so has part: feature:7559097-7559308:-1:exon
so has part: feature:7503958-7504096:-1:exon
so has part: feature:7475935-7476085:-1:exon
so has part: feature:7466019-7466134:-1:exon
so has part: feature:7459483-7459817:-1:exon

XP_005689315.1
type: Protein
SIO_000068: ncbiprotein

position:7459483:-1
position: 7459483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7839561:-1
position: 7839561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7839430-7839561:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7653632-7653780:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7635146-7635268:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7613941-7614245:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7561581-7561742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7559097-7559308:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7503958-7504096:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7475935-7476085:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7466019-7466134:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7459483-7459817:-1:exon

LOC108637510
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC108637510
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7739495..7741036
location: region:7739495-7741036:1
so has part: feature:7739495-7741036:1:exon

108637510
type: Gene
SIO_000068: ncbigene

position:7739495:1
position: 7739495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7741036:1
position: 7741036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7739495-7741036:1:exon

LOC108637510
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC108637510
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC108637510
subclass of: SO_0000673
so part of: LOC108637510
location: 7739495..7741036
location: region:7739495-7741036:1
so has part: feature:7739495-7741036:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7739495-7741036:1:exon

LOC102170067
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102170067
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7976747..7978608)
location: region:7976747-7978608:-1
so has part: feature:7976747-7978608:-1:exon

102170067
type: Gene
SIO_000068: ncbigene

position:7976747:-1
position: 7976747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7978608:-1
position: 7978608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7976747-7978608:-1:exon

LOC102170067
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170067
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170067
subclass of: SO_0000673
so part of: LOC102170067
location: complement(7976747..7976900)
location: region:7976747-7976900:-1
so has part: feature:7976747-7976900:-1:exon

position:7976900:-1
position: 7976900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7976747-7976900:-1:exon

LOC102170067
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170067
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170067
subclass of: SO_0000673
so part of: LOC102170067
location: complement(7977339..7977464)
location: region:7977339-7977464:-1
so has part: feature:7977339-7977464:-1:exon

position:7977339:-1
position: 7977339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7977464:-1
position: 7977464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7977339-7977464:-1:exon

LOC102170067
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170067
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170067
subclass of: SO_0000673
so part of: LOC102170067
location: complement(7978260..7978296)
location: region:7978260-7978296:-1
so has part: feature:7978260-7978296:-1:exon

position:7978260:-1
position: 7978260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7978296:-1
position: 7978296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7978260-7978296:-1:exon

LOC102170067
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102170067
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 12% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102170067
subclass of: SO_0000673
so part of: LOC102170067
location: complement(7978385..7978608)
location: region:7978385-7978608:-1
so has part: feature:7978385-7978608:-1:exon

position:7978385:-1
position: 7978385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7978385-7978608:-1:exon

LOC102169776
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC102169776
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(8094026..8094809)
location: region:8094026-8094809:-1
so has part: feature:8094026-8094809:-1:exon

102169776
type: Gene
SIO_000068: ncbigene

position:8094026:-1
position: 8094026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8094809:-1
position: 8094809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8094026-8094809:-1:exon

LOC102169776
type: Exon
subclass of: SO_0000147
RO_0002162: 9925
gene: LOC102169776
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
pseudo: true
SIO_010081: LOC102169776
subclass of: SO_0000673
so part of: LOC102169776
location: complement(8094026..8094809)
location: region:8094026-8094809:-1
so has part: feature:8094026-8094809:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8094026-8094809:-1:exon

RIPK2
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: RIPK2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8294425..8327837
location: region:8294425-8327837:1
so has part: feature:8294425-8327837:1:exon
subclass of: SO_0000010

102169397
type: Gene
SIO_000068: ncbigene

position:8294425:1
position: 8294425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8327837:1
position: 8327837
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8294425-8327837:1:exon

RIPK2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: RIPK2
product: receptor interacting serine/threonine kinase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_018058185.1
SIO_010081: RIPK2
subclass of: SO_0000673
so part of: RIPK2
location: join(8294425..8294859,8304430..8304583,8308564..8308719,8313735..8313892,8314873..8314922,8315749..8315910,8320442..8320527,8323447..8323530,8324564..8324654,8326570..8326725,8327301..8327837)
location: region:8294425-8327837:1
so has part: feature:8294425-8294859:1:exon
so has part: feature:8304430-8304583:1:exon
so has part: feature:8308564-8308719:1:exon
so has part: feature:8313735-8313892:1:exon
so has part: feature:8314873-8314922:1:exon
so has part: feature:8315749-8315910:1:exon
so has part: feature:8320442-8320527:1:exon
so has part: feature:8323447-8323530:1:exon
so has part: feature:8324564-8324654:1:exon
so has part: feature:8326570-8326725:1:exon
so has part: feature:8327301-8327837:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8294425-8294859:1:exon

position:8294859:1
position: 8294859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8304430-8304583:1:exon

position:8304430:1
position: 8304430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8304583:1
position: 8304583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8308564-8308719:1:exon

position:8308564:1
position: 8308564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8308719:1
position: 8308719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8313735-8313892:1:exon

position:8313735:1
position: 8313735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8313892:1
position: 8313892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8314873-8314922:1:exon

position:8314873:1
position: 8314873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8314922:1
position: 8314922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8315749-8315910:1:exon

position:8315749:1
position: 8315749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8315910:1
position: 8315910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8320442-8320527:1:exon

position:8320442:1
position: 8320442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8320527:1
position: 8320527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8323447-8323530:1:exon

position:8323447:1
position: 8323447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8323530:1
position: 8323530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8324564-8324654:1:exon

position:8324564:1
position: 8324564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8324654:1
position: 8324654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8326570-8326725:1:exon

position:8326570:1
position: 8326570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8326725:1
position: 8326725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8327301-8327837:1:exon

position:8327301:1
position: 8327301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RIPK2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: RIPK2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: receptor-interacting serine/threonine-protein kinase 2
translation: MSAEAVCSALPAIPYHKLADLRFLSRGASGTVSSARHADWRVQVAVKHLHIHSPLLDSERNDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKIEYPDVPWPLRFRILHEIALGVNYLHNMNPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSSKSVPEGGTIVYMPPENYEPGQKARASVKHDIYSYAIITWEVLSRKQPFEDVTNPLQIMYSVSQGYRPDTNEENLPLDIPHRALMISLIESGWAQNPDERPSFLKCLIELEPVLRTFEEITFLEAVIQLKKTKNASRTVHLSDKKKRELSPNIPVNSGPQEESCGSSQLHKTGGSGTSVSLSTPQDSDFLSGKTEDFSALRPCSVIHSRDRDICVDHRAAFCNHRTAPCSSAIVNPLSVEGNSGRFQPGIAQQWIQSKREDVVSQMTEACLNQSLDALLSRDLIMKEDYELISTKPTRTSKVRQLLDITDIQGEEFARVIVQKLKDNKQMGLQPYPEILVLPQSPSLNFFHNKSHKK
SIO_010081: RIPK2
subclass of: SO_0000673
so part of: RIPK2
location: join(8294687..8294859,8304430..8304583,8308564..8308719,8313735..8313892,8314873..8314922,8315749..8315910,8320442..8320527,8323447..8323530,8324564..8324654,8326570..8326725,8327301..8327644)
location: region:8294687-8327644:1
so has part: feature:8294687-8294859:1:exon
so has part: feature:8304430-8304583:1:exon
so has part: feature:8308564-8308719:1:exon
so has part: feature:8313735-8313892:1:exon
so has part: feature:8314873-8314922:1:exon
so has part: feature:8315749-8315910:1:exon
so has part: feature:8320442-8320527:1:exon
so has part: feature:8323447-8323530:1:exon
so has part: feature:8324564-8324654:1:exon
so has part: feature:8326570-8326725:1:exon
so has part: feature:8327301-8327644:1:exon

XP_017913674.1
type: Protein
SIO_000068: ncbiprotein

position:8294687:1
position: 8294687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8327644:1
position: 8327644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8294687-8294859:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8304430-8304583:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8308564-8308719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8313735-8313892:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8314873-8314922:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8315749-8315910:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8320442-8320527:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8323447-8323530:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8324564-8324654:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8326570-8326725:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8327301-8327644:1:exon

OSGIN2
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: OSGIN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8385823..8415911
location: region:8385823-8415911:1
so has part: feature:8385823-8415911:1:exon
subclass of: SO_0000010

102169114
type: Gene
SIO_000068: ncbigene

position:8385823:1
position: 8385823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8415911:1
position: 8415911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8385823-8415911:1:exon

OSGIN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: OSGIN2
product: oxidative stress induced growth inhibitor family member 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_018058186.1
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: join(8385823..8385945,8395293..8395447,8403850..8403986,8404551..8404742,8408250..8408341,8414019..8415911)
location: region:8385823-8415911:1
so has part: feature:8385823-8385945:1:exon
so has part: feature:8395293-8395447:1:exon
so has part: feature:8403850-8403986:1:exon
so has part: feature:8404551-8404742:1:exon
so has part: feature:8408250-8408341:1:exon
so has part: feature:8414019-8415911:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8385823-8385945:1:exon

position:8385945:1
position: 8385945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8395293-8395447:1:exon

position:8395293:1
position: 8395293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8395447:1
position: 8395447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8403850-8403986:1:exon

position:8403850:1
position: 8403850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8403986:1
position: 8403986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8404551-8404742:1:exon

position:8404551:1
position: 8404551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8404742:1
position: 8404742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8408250-8408341:1:exon

position:8408250:1
position: 8408250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8408341:1
position: 8408341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8414019-8415911:1:exon

position:8414019:1
position: 8414019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OSGIN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: OSGIN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oxidative stress-induced growth inhibitor 2
translation: MPVWCCRCSLAAHFRSYSDTETEGEIFNSLVQYFGDNLGQKVKAMPLVEETSLLEDSSVTLPVVVIGNGPSGICLSYMLSGYRPYLSSEAIHPNTILHSKLEEARHLSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDYPSVLHWKLEQHHYIPHLVLGKGPPGGAWHNMEGSMLTISFGNWMELPGLKFKDWVSSKRRNLKGDRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQVDNDGQGRNISTQHLQIEKSKFAKRNWEIRGYQRVGDGSHIPFCLFAENVALATGTLDSPGRLEIEGEDFPFVFHSMPEFGAAVSKGKLRGKVDPVLIVGSGLTAADAVLCAYNNNVPVIHVFRRRVTDPDLIFKQLPKKLYPEYHKVYHMMCTQSYSSDSNLSSDYTSFPEHHVLAFKSDMKCILQSISGLKKIFKLSAAVVLIGSHPNLSFLKEQGCYLGHNSSLPITCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLAIRQKKKKHLFVERGGGDGIV
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: join(8385902..8385945,8395293..8395447,8403850..8403986,8404551..8404742,8408250..8408341,8414019..8415051)
location: region:8385902-8415051:1
so has part: feature:8385902-8385945:1:exon
so has part: feature:8395293-8395447:1:exon
so has part: feature:8403850-8403986:1:exon
so has part: feature:8404551-8404742:1:exon
so has part: feature:8408250-8408341:1:exon
so has part: feature:8414019-8415051:1:exon

XP_017913675.1
type: Protein
SIO_000068: ncbiprotein

position:8385902:1
position: 8385902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8415051:1
position: 8415051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8385902-8385945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8395293-8395447:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8403850-8403986:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8404551-8404742:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8408250-8408341:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8414019-8415051:1:exon

NBN
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8423824..8482281)
location: region:8423824-8482281:-1
so has part: feature:8423824-8482281:-1:exon
subclass of: SO_0000010

102168649
type: Gene
SIO_000068: ncbigene

position:8423824:-1
position: 8423824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8482281:-1
position: 8482281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8423824-8482281:-1:exon

NBN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: NBN
product: nibrin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 56 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_013969289.2
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: complement(join(8423824..8423990,8425309..8425358,8432918..8433031,8434291..8434446,8435649..8435717,8440925..8441369,8443449..8443727,8445077..8445206,8451405..8451502,8461767..8461960,8462489..8462606,8471778..8471881,8475049..8475208,8475663..8475811,8480019..8480149,8482075..8482281))
location: region:8423824-8482281:-1
so has part: feature:8482075-8482281:-1:exon
so has part: feature:8480019-8480149:-1:exon
so has part: feature:8475663-8475811:-1:exon
so has part: feature:8475049-8475208:-1:exon
so has part: feature:8471778-8471881:-1:exon
so has part: feature:8462489-8462606:-1:exon
so has part: feature:8461767-8461960:-1:exon
so has part: feature:8451405-8451502:-1:exon
so has part: feature:8445077-8445206:-1:exon
so has part: feature:8443449-8443727:-1:exon
so has part: feature:8440925-8441369:-1:exon
so has part: feature:8435649-8435717:-1:exon
so has part: feature:8434291-8434446:-1:exon
so has part: feature:8432918-8433031:-1:exon
so has part: feature:8425309-8425358:-1:exon
so has part: feature:8423824-8423990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8482075-8482281:-1:exon

position:8482075:-1
position: 8482075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8480019-8480149:-1:exon

position:8480019:-1
position: 8480019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8480149:-1
position: 8480149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8475663-8475811:-1:exon

position:8475663:-1
position: 8475663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8475811:-1
position: 8475811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8475049-8475208:-1:exon

position:8475049:-1
position: 8475049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8475208:-1
position: 8475208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8471778-8471881:-1:exon

position:8471778:-1
position: 8471778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8471881:-1
position: 8471881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8462489-8462606:-1:exon

position:8462489:-1
position: 8462489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8462606:-1
position: 8462606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8461767-8461960:-1:exon

position:8461767:-1
position: 8461767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8461960:-1
position: 8461960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8451405-8451502:-1:exon

position:8451405:-1
position: 8451405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8451502:-1
position: 8451502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8445077-8445206:-1:exon

position:8445077:-1
position: 8445077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8445206:-1
position: 8445206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8443449-8443727:-1:exon

position:8443449:-1
position: 8443449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8443727:-1
position: 8443727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8440925-8441369:-1:exon

position:8440925:-1
position: 8440925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8441369:-1
position: 8441369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:8435649-8435717:-1:exon

position:8435649:-1
position: 8435649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8435717:-1
position: 8435717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:8434291-8434446:-1:exon

position:8434291:-1
position: 8434291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8434446:-1
position: 8434446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:8432918-8433031:-1:exon

position:8432918:-1
position: 8432918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8433031:-1
position: 8433031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:8425309-8425358:-1:exon

position:8425309:-1
position: 8425309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8425358:-1
position: 8425358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:8423824-8423990:-1:exon

position:8423990:-1
position: 8423990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NBN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: NBN
product: nibrin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_013969290.2
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: complement(join(8423824..8423990,8425309..8425358,8432918..8433031,8434291..8434446,8435649..8435717,8440925..8441369,8443449..8443727,8445077..8445206,8451405..8451502,8461767..8461960,8462489..8462606,8471778..8471881,8475049..8475208,8475663..8475811,8480019..8480149,8481255..8482035))
location: region:8423824-8482035:-1
so has part: feature:8481255-8482035:-1:exon
so has part: feature:8480019-8480149:-1:exon
so has part: feature:8475663-8475811:-1:exon
so has part: feature:8475049-8475208:-1:exon
so has part: feature:8471778-8471881:-1:exon
so has part: feature:8462489-8462606:-1:exon
so has part: feature:8461767-8461960:-1:exon
so has part: feature:8451405-8451502:-1:exon
so has part: feature:8445077-8445206:-1:exon
so has part: feature:8443449-8443727:-1:exon
so has part: feature:8440925-8441369:-1:exon
so has part: feature:8435649-8435717:-1:exon
so has part: feature:8434291-8434446:-1:exon
so has part: feature:8432918-8433031:-1:exon
so has part: feature:8425309-8425358:-1:exon
so has part: feature:8423824-8423990:-1:exon

position:8482035:-1
position: 8482035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8481255-8482035:-1:exon

position:8481255:-1
position: 8481255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8480019-8480149:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8475663-8475811:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8475049-8475208:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8471778-8471881:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8462489-8462606:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8461767-8461960:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8451405-8451502:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8445077-8445206:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8443449-8443727:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8440925-8441369:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8435649-8435717:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8434291-8434446:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8432918-8433031:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:8425309-8425358:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:8423824-8423990:-1:exon

NBN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: NBN
product: nibrin, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_013969291.2
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: complement(join(8423824..8423990,8425309..8425358,8432918..8433031,8434291..8434446,8435649..8435717,8440925..8441369,8443449..8443727,8445077..8445206,8451405..8451502,8461767..8461960,8462489..8462606,8471778..8471881,8475049..8475167,8475663..8475735))
location: region:8423824-8475735:-1
so has part: feature:8475663-8475735:-1:exon
so has part: feature:8475049-8475167:-1:exon
so has part: feature:8471778-8471881:-1:exon
so has part: feature:8462489-8462606:-1:exon
so has part: feature:8461767-8461960:-1:exon
so has part: feature:8451405-8451502:-1:exon
so has part: feature:8445077-8445206:-1:exon
so has part: feature:8443449-8443727:-1:exon
so has part: feature:8440925-8441369:-1:exon
so has part: feature:8435649-8435717:-1:exon
so has part: feature:8434291-8434446:-1:exon
so has part: feature:8432918-8433031:-1:exon
so has part: feature:8425309-8425358:-1:exon
so has part: feature:8423824-8423990:-1:exon

position:8475735:-1
position: 8475735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8475663-8475735:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8475049-8475167:-1:exon

position:8475167:-1
position: 8475167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8471778-8471881:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8462489-8462606:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8461767-8461960:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8451405-8451502:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8445077-8445206:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8443449-8443727:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8440925-8441369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8435649-8435717:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8434291-8434446:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8432918-8433031:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8425309-8425358:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8423824-8423990:-1:exon

NBN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nibrin isoform X1
translation: MWKLVPAAGPAREPYRLLTGVEYIVGRKNCGILIEDDQSISRNHATLTANFSVTNLSQTDEIPVLTVKDNSKYGTFVNEEKMQNGLSQILKSGDRVTFGVFESKFRVEYEPLVACSSCLDVSGKTALSHAILQLGGLTVNNWTERCTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVQSKKQPPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTFVFLNAKQHKKLSAAVIFGGGDARLITEENKEDDSFFSAPGTCVVDAGLTDSQTLIPDSQKKWIHSIMDILQRQGLRPIPEAEIGLAVIFVTTENYCDPQGQPSTGLKTTTPGPSLSQALPANKNLMPDASVNATAYVADTESEQADTCMDMSERPKEIKIFGMEPKCRILSQETSTVKKPHKISSNSNIVSNTLVRMKIPNYQLSPTKFPHVNKSRGWPSQHQQTNSIKDYFQPLNSPKKRERDEENQEMSLSKSARMEISCSLLEQTQPTTSSIRKIKDEHLSQNVLVEKNPDNSYADTNLKLTVKNYANKSLFTEKLKSEKRKEIDDLAIEEEVLEQLFKDTELELESEVKVQKQEEDTNVRKRPRLDIETNATFNDETIPESNKISQENEIEKKCELKKESLWSTKELSNNGEPQDGDEMLPKKVLLTEFRSLVVCNSTSTNASSVNNDYGELKNFKKFKKVTFPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEDSLADDLFRYNPNVKRRR
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: complement(join(8423960..8423990,8425309..8425358,8432918..8433031,8434291..8434446,8435649..8435717,8440925..8441369,8443449..8443727,8445077..8445206,8451405..8451502,8461767..8461960,8462489..8462606,8471778..8471881,8475049..8475208,8475663..8475811,8480019..8480149,8482075..8482111))
location: region:8423960-8482111:-1
so has part: feature:8482075-8482111:-1:exon
so has part: feature:8480019-8480149:-1:exon
so has part: feature:8475663-8475811:-1:exon
so has part: feature:8475049-8475208:-1:exon
so has part: feature:8471778-8471881:-1:exon
so has part: feature:8462489-8462606:-1:exon
so has part: feature:8461767-8461960:-1:exon
so has part: feature:8451405-8451502:-1:exon
so has part: feature:8445077-8445206:-1:exon
so has part: feature:8443449-8443727:-1:exon
so has part: feature:8440925-8441369:-1:exon
so has part: feature:8435649-8435717:-1:exon
so has part: feature:8434291-8434446:-1:exon
so has part: feature:8432918-8433031:-1:exon
so has part: feature:8425309-8425358:-1:exon
so has part: feature:8423960-8423990:-1:exon

XP_013824743.2
type: Protein
SIO_000068: ncbiprotein

position:8423960:-1
position: 8423960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8482111:-1
position: 8482111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8482075-8482111:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8480019-8480149:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8475663-8475811:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8475049-8475208:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8471778-8471881:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8462489-8462606:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8461767-8461960:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8451405-8451502:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8445077-8445206:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8443449-8443727:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8440925-8441369:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8435649-8435717:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8434291-8434446:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8432918-8433031:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:8425309-8425358:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:8423960-8423990:-1:exon

NBN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nibrin isoform X2
translation: MQNGLSQILKSGDRVTFGVFESKFRVEYEPLVACSSCLDVSGKTALSHAILQLGGLTVNNWTERCTHLVMVSVKVTIKTICALICGRPIVKPEYFTEFLKAVQSKKQPPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTFVFLNAKQHKKLSAAVIFGGGDARLITEENKEDDSFFSAPGTCVVDAGLTDSQTLIPDSQKKWIHSIMDILQRQGLRPIPEAEIGLAVIFVTTENYCDPQGQPSTGLKTTTPGPSLSQALPANKNLMPDASVNATAYVADTESEQADTCMDMSERPKEIKIFGMEPKCRILSQETSTVKKPHKISSNSNIVSNTLVRMKIPNYQLSPTKFPHVNKSRGWPSQHQQTNSIKDYFQPLNSPKKRERDEENQEMSLSKSARMEISCSLLEQTQPTTSSIRKIKDEHLSQNVLVEKNPDNSYADTNLKLTVKNYANKSLFTEKLKSEKRKEIDDLAIEEEVLEQLFKDTELELESEVKVQKQEEDTNVRKRPRLDIETNATFNDETIPESNKISQENEIEKKCELKKESLWSTKELSNNGEPQDGDEMLPKKVLLTEFRSLVVCNSTSTNASSVNNDYGELKNFKKFKKVTFPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEDSLADDLFRYNPNVKRRR
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: complement(join(8423960..8423990,8425309..8425358,8432918..8433031,8434291..8434446,8435649..8435717,8440925..8441369,8443449..8443727,8445077..8445206,8451405..8451502,8461767..8461960,8462489..8462606,8471778..8471881,8475049..8475208,8475663..8475736))
location: region:8423960-8475736:-1
so has part: feature:8475663-8475736:-1:exon
so has part: feature:8475049-8475208:-1:exon
so has part: feature:8471778-8471881:-1:exon
so has part: feature:8462489-8462606:-1:exon
so has part: feature:8461767-8461960:-1:exon
so has part: feature:8451405-8451502:-1:exon
so has part: feature:8445077-8445206:-1:exon
so has part: feature:8443449-8443727:-1:exon
so has part: feature:8440925-8441369:-1:exon
so has part: feature:8435649-8435717:-1:exon
so has part: feature:8434291-8434446:-1:exon
so has part: feature:8432918-8433031:-1:exon
so has part: feature:8425309-8425358:-1:exon
so has part: feature:8423960-8423990:-1:exon

XP_013824744.2
type: Protein
SIO_000068: ncbiprotein

position:8475736:-1
position: 8475736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8475663-8475736:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8475049-8475208:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8471778-8471881:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8462489-8462606:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8461767-8461960:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8451405-8451502:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8445077-8445206:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8443449-8443727:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8440925-8441369:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8435649-8435717:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8434291-8434446:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8432918-8433031:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8425309-8425358:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8423960-8423990:-1:exon

NBN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nibrin isoform X3
translation: MVSVKVTIKTICALICGRPIVKPEYFTEFLKAVQSKKQPPEIESFYPPVDEPAIESKNIDLSGRQERKQIFKGKTFVFLNAKQHKKLSAAVIFGGGDARLITEENKEDDSFFSAPGTCVVDAGLTDSQTLIPDSQKKWIHSIMDILQRQGLRPIPEAEIGLAVIFVTTENYCDPQGQPSTGLKTTTPGPSLSQALPANKNLMPDASVNATAYVADTESEQADTCMDMSERPKEIKIFGMEPKCRILSQETSTVKKPHKISSNSNIVSNTLVRMKIPNYQLSPTKFPHVNKSRGWPSQHQQTNSIKDYFQPLNSPKKRERDEENQEMSLSKSARMEISCSLLEQTQPTTSSIRKIKDEHLSQNVLVEKNPDNSYADTNLKLTVKNYANKSLFTEKLKSEKRKEIDDLAIEEEVLEQLFKDTELELESEVKVQKQEEDTNVRKRPRLDIETNATFNDETIPESNKISQENEIEKKCELKKESLWSTKELSNNGEPQDGDEMLPKKVLLTEFRSLVVCNSTSTNASSVNNDYGELKNFKKFKKVTFPGAGKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEDSLADDLFRYNPNVKRRR
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: complement(join(8423960..8423990,8425309..8425358,8432918..8433031,8434291..8434446,8435649..8435717,8440925..8441369,8443449..8443727,8445077..8445206,8451405..8451502,8461767..8461960,8462489..8462606,8471778..8471881,8475049..8475075))
location: region:8423960-8475075:-1
so has part: feature:8475049-8475075:-1:exon
so has part: feature:8471778-8471881:-1:exon
so has part: feature:8462489-8462606:-1:exon
so has part: feature:8461767-8461960:-1:exon
so has part: feature:8451405-8451502:-1:exon
so has part: feature:8445077-8445206:-1:exon
so has part: feature:8443449-8443727:-1:exon
so has part: feature:8440925-8441369:-1:exon
so has part: feature:8435649-8435717:-1:exon
so has part: feature:8434291-8434446:-1:exon
so has part: feature:8432918-8433031:-1:exon
so has part: feature:8425309-8425358:-1:exon
so has part: feature:8423960-8423990:-1:exon

XP_013824745.2
type: Protein
SIO_000068: ncbiprotein

position:8475075:-1
position: 8475075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8475049-8475075:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8471778-8471881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8462489-8462606:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8461767-8461960:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8451405-8451502:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8445077-8445206:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8443449-8443727:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8440925-8441369:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8435649-8435717:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8434291-8434446:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8432918-8433031:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8425309-8425358:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8423960-8423990:-1:exon

DECR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: DECR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8498742..8541843
location: region:8498742-8541843:1
so has part: feature:8498742-8541843:1:exon
subclass of: SO_0000010

102191818
type: Gene
SIO_000068: ncbigene

position:8498742:1
position: 8498742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8541843:1
position: 8541843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8498742-8541843:1:exon

DECR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: DECR1
product: 2,4-dienoyl-CoA reductase 1, mitochondrial
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 17 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_005689252.3
SIO_010081: DECR1
subclass of: SO_0000673
so part of: DECR1
location: join(8498742..8498857,8512468..8512670,8513883..8513940,8514065..8514151,8515107..8515254,8532622..8532721,8537675..8537747,8540405..8540551,8541032..8541094,8541198..8541843)
location: region:8498742-8541843:1
so has part: feature:8498742-8498857:1:exon
so has part: feature:8512468-8512670:1:exon
so has part: feature:8513883-8513940:1:exon
so has part: feature:8514065-8514151:1:exon
so has part: feature:8515107-8515254:1:exon
so has part: feature:8532622-8532721:1:exon
so has part: feature:8537675-8537747:1:exon
so has part: feature:8540405-8540551:1:exon
so has part: feature:8541032-8541094:1:exon
so has part: feature:8541198-8541843:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8498742-8498857:1:exon

position:8498857:1
position: 8498857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8512468-8512670:1:exon

position:8512468:1
position: 8512468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8512670:1
position: 8512670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8513883-8513940:1:exon

position:8513883:1
position: 8513883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8513940:1
position: 8513940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8514065-8514151:1:exon

position:8514065:1
position: 8514065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8514151:1
position: 8514151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8515107-8515254:1:exon

position:8515107:1
position: 8515107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8515254:1
position: 8515254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8532622-8532721:1:exon

position:8532622:1
position: 8532622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8532721:1
position: 8532721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8537675-8537747:1:exon

position:8537675:1
position: 8537675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8537747:1
position: 8537747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8540405-8540551:1:exon

position:8540405:1
position: 8540405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8540551:1
position: 8540551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8541032-8541094:1:exon

position:8541032:1
position: 8541032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8541094:1
position: 8541094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8541198-8541843:1:exon

position:8541198:1
position: 8541198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DECR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: DECR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 2,4-dienoyl-CoA reductase, mitochondrial
translation: MAVLSQLLFSWGRGPRRFFSYGTKILYQNNEALQAKFFPPFPKVMLPPNSFQGKVAFITGGGTGLGKGMTTYLSSLGAQCVIASRKIDVLKATAEQISSQTGNKVHAIQCDVRDPDVVQNTVSETIKVLGHPDIVINNAAGNFISPSERLSPNAWKTITDIVLNGTAFVTLAIGKELIKAQKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRIPCGRLGTVEELANLAAFLCSDYASWINGAVIRFDGGEEVLISGEFNSLRKVSKDQWDMIEGLIRKTKGS
SIO_010081: DECR1
subclass of: SO_0000673
so part of: DECR1
location: join(8498807..8498857,8512468..8512670,8513883..8513940,8514065..8514151,8515107..8515254,8532622..8532721,8537675..8537747,8540405..8540551,8541032..8541094,8541198..8541257)
location: region:8498807-8541257:1
so has part: feature:8498807-8498857:1:exon
so has part: feature:8512468-8512670:1:exon
so has part: feature:8513883-8513940:1:exon
so has part: feature:8514065-8514151:1:exon
so has part: feature:8515107-8515254:1:exon
so has part: feature:8532622-8532721:1:exon
so has part: feature:8537675-8537747:1:exon
so has part: feature:8540405-8540551:1:exon
so has part: feature:8541032-8541094:1:exon
so has part: feature:8541198-8541257:1:exon

XP_005689309.2
type: Protein
SIO_000068: ncbiprotein

position:8498807:1
position: 8498807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8541257:1
position: 8541257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8498807-8498857:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8512468-8512670:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8513883-8513940:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8514065-8514151:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8515107-8515254:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8532622-8532721:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8537675-8537747:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8540405-8540551:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8541032-8541094:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8541198-8541257:1:exon

LOC106502862
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: LOC106502862
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 8521663..8523741
location: region:8521663-8523741:1
so has part: feature:8521663-8523741:1:exon
subclass of: SO_0000010

106502862
type: Gene
SIO_000068: ncbigene

position:8521663:1
position: 8521663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8523741:1
position: 8523741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8521663-8523741:1:exon

LOC106502862
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: LOC106502862
product: V-type proton ATPase subunit S1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_013969299.2
SIO_010081: LOC106502862
subclass of: SO_0000673
so part of: LOC106502862
location: 8521663..8523741
location: region:8521663-8523741:1
so has part: feature:8521663-8523741:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8521663-8523741:1:exon

LOC106502862
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: LOC106502862
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-type proton ATPase subunit S1
translation: MPWLPLMLVMAAAAATSEQQVSLVLWSSDRGLWAPAADTHEGHITSDMQLSTYLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGSKQDSAFSNLENALDLAPSSLVLPAVDWYAISTLTAYLQEKLRASPLHVDLATLQELKLNASIPALLLIHLPYTASSGLMAPKEVLMGNAEVIGQVLSTLKSEDIPYTAALTAVRPSRVARYVAMVTGGLGRQLLQRTVAPPAINAPVSYNDTARRILFWAQNFSVAYREHWEDLTSRTFGVQDLNLTGSSWNDSIARLVLTYDSLFGTMVTFKFTLANRFYRLSARYWFTLENLEIHSNRSVAYSNASQVTGPSIYSFHCEHVSSENEDGSLLVPDTQPSLWQMTFRDFQIQAFNVTGEQFSYASNCAGFFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTITLTQIV
SIO_010081: LOC106502862
subclass of: SO_0000673
so part of: LOC106502862
location: 8521708..8523048
location: region:8521708-8523048:1
so has part: feature:8521708-8523048:1:exon

XP_013824753.2
type: Protein
SIO_000068: ncbiprotein

position:8521708:1
position: 8521708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8523048:1
position: 8523048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8521708-8523048:1:exon

CALB1
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: CALB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8553204..8575056)
location: region:8553204-8575056:-1
so has part: feature:8553204-8575056:-1:exon
subclass of: SO_0000010

102191539
type: Gene
SIO_000068: ncbigene

position:8553204:-1
position: 8553204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8575056:-1
position: 8575056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8553204-8575056:-1:exon

CALB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: CALB1
product: calbindin 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 44 ESTs, 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_005689251.3
SIO_010081: CALB1
subclass of: SO_0000673
so part of: CALB1
location: complement(join(8553204..8554867,8555207..8555278,8556131..8556184,8556312..8556351,8556441..8556496,8557249..8557326,8560757..8560813,8560918..8561001,8569937..8570011,8574130..8574206,8574732..8575056))
location: region:8553204-8575056:-1
so has part: feature:8574732-8575056:-1:exon
so has part: feature:8574130-8574206:-1:exon
so has part: feature:8569937-8570011:-1:exon
so has part: feature:8560918-8561001:-1:exon
so has part: feature:8560757-8560813:-1:exon
so has part: feature:8557249-8557326:-1:exon
so has part: feature:8556441-8556496:-1:exon
so has part: feature:8556312-8556351:-1:exon
so has part: feature:8556131-8556184:-1:exon
so has part: feature:8555207-8555278:-1:exon
so has part: feature:8553204-8554867:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8574732-8575056:-1:exon

position:8574732:-1
position: 8574732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8574130-8574206:-1:exon

position:8574130:-1
position: 8574130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8574206:-1
position: 8574206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8569937-8570011:-1:exon

position:8569937:-1
position: 8569937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8570011:-1
position: 8570011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8560918-8561001:-1:exon

position:8560918:-1
position: 8560918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8561001:-1
position: 8561001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8560757-8560813:-1:exon

position:8560757:-1
position: 8560757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8560813:-1
position: 8560813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8557249-8557326:-1:exon

position:8557249:-1
position: 8557249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8557326:-1
position: 8557326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8556441-8556496:-1:exon

position:8556441:-1
position: 8556441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8556496:-1
position: 8556496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8556312-8556351:-1:exon

position:8556312:-1
position: 8556312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8556351:-1
position: 8556351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8556131-8556184:-1:exon

position:8556131:-1
position: 8556131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8556184:-1
position: 8556184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8555207-8555278:-1:exon

position:8555207:-1
position: 8555207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8555278:-1
position: 8555278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8553204-8554867:-1:exon

position:8554867:-1
position: 8554867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CALB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: CALB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calbindin
translation: MAESHLQSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGVKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINNIPTYKKSIMALSDGGKLYRTDLALILSAGDN
SIO_010081: CALB1
subclass of: SO_0000673
so part of: CALB1
location: complement(join(8554754..8554867,8555207..8555278,8556131..8556184,8556312..8556351,8556441..8556496,8557249..8557326,8560757..8560813,8560918..8561001,8569937..8570011,8574130..8574206,8574732..8574810))
location: region:8554754-8574810:-1
so has part: feature:8574732-8574810:-1:exon
so has part: feature:8574130-8574206:-1:exon
so has part: feature:8569937-8570011:-1:exon
so has part: feature:8560918-8561001:-1:exon
so has part: feature:8560757-8560813:-1:exon
so has part: feature:8557249-8557326:-1:exon
so has part: feature:8556441-8556496:-1:exon
so has part: feature:8556312-8556351:-1:exon
so has part: feature:8556131-8556184:-1:exon
so has part: feature:8555207-8555278:-1:exon
so has part: feature:8554754-8554867:-1:exon

XP_005689308.1
type: Protein
SIO_000068: ncbiprotein

position:8554754:-1
position: 8554754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8574810:-1
position: 8574810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8574732-8574810:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8574130-8574206:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8569937-8570011:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8560918-8561001:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8560757-8560813:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8557249-8557326:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8556441-8556496:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8556312-8556351:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8556131-8556184:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8555207-8555278:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8554754-8554867:-1:exon

TMEM64
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TMEM64
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8656709..8693108)
location: region:8656709-8693108:-1
so has part: feature:8656709-8693108:-1:exon
subclass of: SO_0000010

102172825
type: Gene
SIO_000068: ncbigene

position:8656709:-1
position: 8656709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8693108:-1
position: 8693108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8656709-8693108:-1:exon

TMEM64
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TMEM64
product: transmembrane protein 64
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 44 ESTs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_013969329.2
SIO_010081: TMEM64
subclass of: SO_0000673
so part of: TMEM64
location: complement(join(8656709..8660684,8676187..8676342,8692058..8693108))
location: region:8656709-8693108:-1
so has part: feature:8692058-8693108:-1:exon
so has part: feature:8676187-8676342:-1:exon
so has part: feature:8656709-8660684:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8692058-8693108:-1:exon

position:8692058:-1
position: 8692058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8676187-8676342:-1:exon

position:8676187:-1
position: 8676187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8676342:-1
position: 8676342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8656709-8660684:-1:exon

position:8660684:-1
position: 8660684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMEM64
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: TMEM64
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 64
translation: MWSAGGSLLQSLPRLLQYAAAFPGHAEPPPPPAGWALPRAAGGDGPAERLPPRGGGASAAAAAAAAAPGTLLGACLERHAPPDASELPGPGGALAGGPGGGGVVVDVAEVRSWRCCCLGSTCWCRSLVLVCVLAAVCFASLALVRRYLQHLLLWAESLDSLLGVLLFVVGFIVVSFPCGWGYIVLNVAAGYLYGFVLGMGLMVVGVLIGTFIAHVVCKRLLTAWVAARIQSSEKLSAVIRVVEGGSGLKVVALARLTPIPFGLQNAVFSITDLSLPNYLVASSAGLLPTQLLNSYLGTTLRTMEDVIAEQSASGYFVFCLQIIISIGLMFYVVHRAQVELNAAIVACEMELKTSLVKGNQPNISGSSFYKRTLTFSGDGINIV
SIO_010081: TMEM64
subclass of: SO_0000673
so part of: TMEM64
location: complement(join(8660496..8660684,8676187..8676342,8692058..8692864))
location: region:8660496-8692864:-1
so has part: feature:8692058-8692864:-1:exon
so has part: feature:8676187-8676342:-1:exon
so has part: feature:8660496-8660684:-1:exon

XP_013824783.2
type: Protein
SIO_000068: ncbiprotein

position:8660496:-1
position: 8660496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8692864:-1
position: 8692864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8692058-8692864:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8676187-8676342:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8660496-8660684:-1:exon

C14H8orf88
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: C14H8orf88
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8732937..8764096)
location: region:8732937-8764096:-1
so has part: feature:8732937-8764096:-1:exon
subclass of: SO_0000010

102191255
type: Gene
SIO_000068: ncbigene

position:8732937:-1
position: 8732937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8764096:-1
position: 8764096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8732937-8764096:-1:exon

C14H8orf88
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: C14H8orf88
product: chromosome 14 C8orf88 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_005689250.3
SIO_010081: C14H8orf88
subclass of: SO_0000673
so part of: C14H8orf88
location: complement(join(8732937..8733711,8743555..8743661,8747771..8747843,8753548..8753621,8756456..8756554,8763970..8764096))
location: region:8732937-8764096:-1
so has part: feature:8763970-8764096:-1:exon
so has part: feature:8756456-8756554:-1:exon
so has part: feature:8753548-8753621:-1:exon
so has part: feature:8747771-8747843:-1:exon
so has part: feature:8743555-8743661:-1:exon
so has part: feature:8732937-8733711:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8763970-8764096:-1:exon

position:8763970:-1
position: 8763970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8756456-8756554:-1:exon

position:8756456:-1
position: 8756456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8756554:-1
position: 8756554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8753548-8753621:-1:exon

position:8753548:-1
position: 8753548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8753621:-1
position: 8753621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8747771-8747843:-1:exon

position:8747771:-1
position: 8747771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8747843:-1
position: 8747843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8743555-8743661:-1:exon

position:8743555:-1
position: 8743555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8743661:-1
position: 8743661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8732937-8733711:-1:exon

position:8733711:-1
position: 8733711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C14H8orf88
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9925
gene: C14H8orf88
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C8orf88 homolog
translation: MIMETKKLIGKPLQPARPVRHLSSPPGAVFPFNFQNEYPCNTQYLQSGVSRCKTNGMQAFSQGLNEQQHHSPVKKERIKYSRDFLLKLSSVSICRKKPDFLPDHPIVLQKPENNQSFK
SIO_010081: C14H8orf88
subclass of: SO_0000673
so part of: C14H8orf88
location: complement(join(8733688..8733711,8743555..8743661,8747771..8747843,8753548..8753621,8756456..8756534))
location: region:8733688-8756534:-1
so has part: feature:8756456-8756534:-1:exon
so has part: feature:8753548-8753621:-1:exon
so has part: feature:8747771-8747843:-1:exon
so has part: feature:8743555-8743661:-1:exon
so has part: feature:8733688-8733711:-1:exon

XP_005689307.1
type: Protein
SIO_000068: ncbiprotein

position:8733688:-1
position: 8733688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8756534:-1
position: 8756534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8756456-8756534:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8753548-8753621:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8747771-8747843:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8743555-8743661:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8733688-8733711:-1:exon

TMEM55A
type: Gene
subclass of: SO_0000704
RO_0002162: 9925
gene: TMEM55A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8780217..8852553)
location: region:8780217-8852553:-1
so has part: feature:8780217-8852553:-1:exon
subclass of: SO_0000010

102172557
type: Gene
SIO_000068: ncbigene

position:8780217:-1
position: 8780217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8852553:-1
position: 8852553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8780217-8852553:-1:exon

TMEM55A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9925
gene: TMEM55A
product: transmembrane protein 55A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_013969364.2
SIO_010081: TMEM55A
subclass of: SO_0000673
so part of: TMEM55A
location: complement(join(8780217..8781046,8781693..8781783,8798792..8798844,8808791..8808914,8810174..8810280,8818420..8818568,8852359..8852553))
location: region:8780217-8852553:-1
so has part: feature:8852359-8852553:-1:exon
so has part: feature:8818420-8818568:-1:exon
so has part: feature:8810174-8810280:-1:exon
so has part: feature:8808791-8808914:-1:exon
so has part: feature:8798792-8798844:-1:exon
so has part: feature:8781693-8781783:-1:exon
so has part: feature:8780217-8781046:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8852359-8852553:-1:exon

position:8852359:-1
position: 8852359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8818420-8818568:-1:exon

position:8818420:-1
position: 8818420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8818568:-1
position: 8818568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8810174-8810280:-1:exon

position:8810174:-1
position: 8810174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8810280:-1
position: 8810280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8808791-8808914:-1:exon

position:8808791:-1
position: 8808791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8808914:-1
position: 8808914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8798792-8798844:-1:exon

position:8798792:-1
position: 8798792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8798844:-1
position: 8798844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8781693-8781783:-1:exon

position:8781693:-1
position: 8781693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8781783:-1
position: 8781783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8780217-8781046:-1:exon

position:8781046:-1
position: 8781046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMEM55A
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9925
gene: TMEM55A
product: transmembrane protein 55A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, and 49% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_001919120.1
SIO_010081: TMEM55A
so part of: TMEM55A
location: complement(join(8780217..8781046,8781693..8781783,8798792..8798844,8808791..8808914,8810174..8810280,8818420..8818568,8850131..8851588,8852359..8852470))
location: region:8780217-8852470:-1
so has part: feature:8852359-8852470:-1:exon
so has part: feature:8850131-8851588:-1:exon
so has part: feature:8818420-8818568:-1:exon
so has part: feature:8810174-8810280:-1:exon
so has part: feature:8808791-8808914:-1:exon
so has part: feature:8798792-8798844:-1:exon
so has part: feature:8781693-8781783:-1:exon
so has part: feature:8780217-8781046:-1:exon

position:8852470:-1
position: 8852470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8852359-8852470:-1:exon