Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture
Submitted (06-APR-2011) Chinese Academy of Sciences, Institute of Microbiology, NO.1 West Beichen Road, Chaoyang District, Beijing, Beijing 100101, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP002661.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 01:15:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,987\nCDSs (total) :: 3,875\nGenes (coding) :: 3,848\nCDSs (with protein) :: 3,848\nGenes (RNA) :: 112\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 6\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 7 of 27\nPseudo Genes (incomplete) :: 22 of 27\nPseudo Genes (internal stop) :: 6 of 27\nPseudo Genes (multiple problems) :: 8 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010890687.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890688.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890689.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890690.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890691.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890692.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890695.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890696.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010890697.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890698.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890699.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890700.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890701.1
COORDINATES: similar to AA sequence:RefSeq:WP_017810891.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890702.1
GO:0009847 - spore germination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890704.1
Ger(x)C family spore germination protein
COORDINATES: similar to AA sequence:RefSeq:WP_013913497.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890706.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890707.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890708.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890709.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890710.1
alpha-keto acid decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890711.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890712.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890713.1
TetR-like C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890714.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890715.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890716.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_010890717.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890718.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890719.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890720.1
GO:0004022 - alcohol dehydrogenase (NAD+) activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006066 - alcohol metabolic process [Evidence IEA]; GO:0015976 - carbon utilization [Evidence IEA]
bifunctional acetaldehyde-CoA/alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_010890721.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890722.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890723.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890724.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890725.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010890726.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890727.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890728.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890729.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890730.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890731.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890732.1
COORDINATES: similar to AA sequence:RefSeq:WP_003485192.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007059421.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890734.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890735.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890736.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010890737.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890738.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890739.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013913499.1
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_010890741.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890742.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890743.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890744.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890745.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890746.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890747.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890748.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890749.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890750.1
M6 family metalloprotease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003455841.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
mannose/fructose/sorbose PTS transporter subunit IIA
COORDINATES: similar to AA sequence:RefSeq:WP_010890752.1
GO:0034219 - carbohydrate transmembrane transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS mannose/fructose/sorbose transporter subunit IIC
COORDINATES: similar to AA sequence:RefSeq:WP_011968058.1
GO:1902495 - transmembrane transporter complex [Evidence IEA]
GO:0016301 - kinase activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
PTS system mannose/fructose/sorbose family transporter subunit IID
COORDINATES: similar to AA sequence:RefSeq:WP_003357823.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890755.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890756.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890757.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890758.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_010890759.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890760.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890761.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890762.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0052693 - epoxyqueuosine reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]; GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012059800.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890764.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010890765.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009037 - tyrosine-based site-specific recombinase activity [Evidence IEA]
GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]; GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012103854.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014519103.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010890768.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890769.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890770.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890771.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890772.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890773.1
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890774.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890775.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890776.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004890417.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890780.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890781.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890782.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003444832.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890784.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890785.1
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: similar to AA sequence:RefSeq:WP_010890787.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890788.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890789.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890790.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890791.1
COORDINATES: similar to AA sequence:RefSeq:WP_003427140.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890793.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890794.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007060307.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890796.1
COORDINATES: similar to AA sequence:RefSeq:WP_004454689.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890798.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890799.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890801.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890802.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890803.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890804.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890805.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890806.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890807.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890808.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890809.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890810.1
GO:0000166 - nucleotide binding [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890811.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890812.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890813.1
GO:2001070 - starch binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890814.1
COORDINATES: similar to AA sequence:RefSeq:WP_007061378.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890816.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890817.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890818.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890819.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890820.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890821.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890822.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890823.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890824.1
GO:0015297 - antiporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014519113.1
COORDINATES: similar to AA sequence:RefSeq:WP_012099820.1
nickel-dependent hydrogenase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010890827.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890828.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890829.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890830.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012343337.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890832.1
GO:0034480 - phosphatidylcholine phospholipase C activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890833.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890834.1
GO:0008658 - penicillin binding [Evidence IEA]
penicillin-binding transpeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890835.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890836.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890837.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890838.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890840.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890841.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_010890842.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890843.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890845.1
Sol locus transcriptional repressor SolR
COORDINATES: similar to AA sequence:RefSeq:WP_010890846.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890847.1
butyrate--acetoacetate CoA-transferase subunit A
COORDINATES: similar to AA sequence:RefSeq:WP_010890848.1
butyrate--acetoacetate CoA-transferase subunit B
COORDINATES: similar to AA sequence:RefSeq:WP_010890849.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890850.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890851.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890852.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890853.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890854.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890855.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890856.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890857.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890858.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890859.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890860.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890861.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890862.1