Bos indicus isolate QUIL7308 breed Nelore chromosome 21, Bos_indicus_1.0, whole genome shotgun sequence.
type: Entry
definition: Bos indicus isolate QUIL7308 breed Nelore chromosome 21, Bos_indicus_1.0, whole genome shotgun sequence.
sequence version: NC_032670.1
sequence date: 2017-01-12
sequence: sequence
division: CON
label: NC_032670.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA360096
dblink: SAMN02953802
keyword: WGS
keyword: RefSeq
source: Bos indicus (Bos taurus indicus)
organism: Bos indicus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos.
reference: 1
references: 22315242
reference: 2
references: 9023104
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM003041.1.\nAssembly name: Bos_indicus_1.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Genoa Biotecnologia SA on\n2014/11/25. The original whole-genome shotgun project has the\naccession AGFL00000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Genoa Biotecnologia SA\nAssembly Method :: BWA v. 0.5.9\nAssembly Name :: Bos_indicus_1.0\nReference-guided Assembly :: GCF_000003205.2; Btau_4.0\nGenome Coverage :: 52x\nSequencing Technology :: SOLiD\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Bos indicus Annotation Release 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 69307409
topology: linear
so has quality: SO_0000987
location: 1..69307409
location: region:1-69307409:1
RO_0002162: 9915

NC_032670
type: RefSeq
SIO_000068: refseq

PRJNA360096
type: BioProject
SIO_000068: bioproject

SAMN02953802
type: BioSample
SIO_000068: biosample

1
title: Genome sequence and assembly of Bos indicus
author: Canavez, F.C.
author: Luche, D.D.
author: Stothard, P.
author: Leite, K.R.
author: Sousa-Canavez, J.M.
author: Plastow, G.
author: Meidanis, J.
author: Souza, M.A.
author: Feijao, P.
author: Moore, S.S.
author: Camara-Lopes, L.H.
journal: J. Hered.
volume: 103
issue: 3
pages: 342-348
year: 2012
pubmed: 22315242

22315242
type: PubMed
SIO_000068: pubmed

2
title: tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
author: Lowe, T.M.
author: Eddy, S.R.
journal: Nucleic Acids Res.
volume: 25
issue: 5
pages: 955-964
year: 1997
pubmed: 9023104
comments: This is the methods paper for tRNAscan-SE.

9023104
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69307409:1
position: 69307409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-69307409:1:source
so part of: sequence
organism: Bos indicus
mol type: genomic DNA
isolate: QUIL7308
chromosome: 21
sex: male
tissue type: peripheral blood mononuclear cells
country: Brazil
breed: Nelore
note: animal owned by Agropecuaria Quilombo Inc.

9915
type: Taxonomy
SIO_000068: taxonomy

LOC109575459
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575459
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1358..44036
location: region:1358-44036:1
so has part: feature:1358-44036:1:exon
subclass of: SO_0000010

109575459
type: Gene
SIO_000068: ncbigene

position:1358:1
position: 1358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:44036:1
position: 44036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1358-44036:1:exon

LOC109575459
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_019983601.1
SIO_010081: LOC109575459
subclass of: SO_0000673
so part of: LOC109575459
location: join(1358..2314,4613..4763,7065..7215,9864..10017,12380..12528,13616..13719,14056..14704)
location: region:1358-14704:1
so has part: feature:1358-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:12380-12528:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:14056-14704:1:exon

position:14704:1
position: 14704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1358-2314:1:exon

position:2314:1
position: 2314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

position:4613:1
position: 4613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4763:1
position: 4763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

position:7065:1
position: 7065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7215:1
position: 7215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

position:9864:1
position: 9864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10017:1
position: 10017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12380-12528:1:exon

position:12380:1
position: 12380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12528:1
position: 12528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:13616-13719:1:exon

position:13616:1
position: 13616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13719:1
position: 13719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14056-14704:1:exon

position:14056:1
position: 14056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XR_002183241.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1368..2314,4613..4763,7065..7215,9864..10017,13616..13719,36500..36697,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1368-44036:1
so has part: feature:1368-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:36500-36697:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

position:1368:1
position: 1368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1368-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:36500-36697:1:exon

position:36500:1
position: 36500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:36697:1
position: 36697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:38930-39060:1:exon

position:38930:1
position: 38930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39060:1
position: 39060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:39377-39505:1:exon

position:39377:1
position: 39377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:39505:1
position: 39505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:41369-41482:1:exon

position:41369:1
position: 41369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:41482:1
position: 41482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:42418-44036:1:exon

position:42418:1
position: 42418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
transcript id: XR_002183239.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1370..2314,4613..4763,7065..7215,9864..10017,12384..12528,13616..13719,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1370-44036:1
so has part: feature:1370-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:12384-12528:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

position:1370:1
position: 1370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1370-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12384-12528:1:exon

position:12384:1
position: 12384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:41369-41482:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XR_002183240.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1370..2314,4613..4763,7065..7215,9864..10017,13616..13719,36500..36657,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1370-44036:1
so has part: feature:1370-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:36500-36657:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1370-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:36500-36657:1:exon

position:36657:1
position: 36657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:41369-41482:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 199 samples with support for all annotated introns
transcript id: XR_002183238.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1377..2314,4613..4763,7065..7215,9864..10017,13616..13719,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1377-44036:1
so has part: feature:1377-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

position:1377:1
position: 1377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1377-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41369-41482:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_002183242.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1377..2314,4613..4763,7065..7215,12384..12528,13616..13719,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1377-44036:1
so has part: feature:1377-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:12384-12528:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1377-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12384-12528:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:41369-41482:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 99 samples with support for all annotated introns
transcript id: XR_002183244.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1383..2314,4613..4763,7065..7215,9864..10017,13616..13719,38930..39060,39377..39505,42418..44036)
location: region:1383-44036:1
so has part: feature:1383-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:42418-44036:1:exon

position:1383:1
position: 1383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1383-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XR_002183243.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1387..2314,4613..4763,7065..7215,13616..13719,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1387-44036:1
so has part: feature:1387-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

position:1387:1
position: 1387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1387-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:41369-41482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XR_002183245.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1395..2314,4613..4763,7065..7215,38930..39060,39377..39505,41369..41482,42418..44036)
location: region:1395-44036:1
so has part: feature:1395-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:38930-39060:1:exon
so has part: feature:39377-39505:1:exon
so has part: feature:41369-41482:1:exon
so has part: feature:42418-44036:1:exon

position:1395:1
position: 1395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1395-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:38930-39060:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:39377-39505:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:41369-41482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:42418-44036:1:exon

LOC109575459
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
transcript id: XR_002183246.1
SIO_010081: LOC109575459
so part of: LOC109575459
location: join(1407..2314,4613..4763,7065..7215,9864..10017,13616..13719,25848..25862)
location: region:1407-25862:1
so has part: feature:1407-2314:1:exon
so has part: feature:4613-4763:1:exon
so has part: feature:7065-7215:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:25848-25862:1:exon

position:1407:1
position: 1407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25862:1
position: 25862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1407-2314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4613-4763:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7065-7215:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:25848-25862:1:exon

position:25848:1
position: 25848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575459
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575459
product: uncharacterized LOC109575459, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_019983600.1
SIO_010081: LOC109575459
subclass of: SO_0000673
so part of: LOC109575459
location: join(7560..7652,9864..10017,12380..12528,12856..13609)
location: region:7560-13609:1
so has part: feature:7560-7652:1:exon
so has part: feature:9864-10017:1:exon
so has part: feature:12380-12528:1:exon
so has part: feature:12856-13609:1:exon

position:7560:1
position: 7560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13609:1
position: 13609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7560-7652:1:exon

position:7652:1
position: 7652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9864-10017:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12380-12528:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12856-13609:1:exon

position:12856:1
position: 12856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575459
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575459
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC109575459 isoform X2
translation: MEDCSQQRTCRIFHNNCPGKTRHVSPQGLLGNWPFDVQVDHPWRQIEXPRMEDHWHRRPITYSMTPSLESQGLRAATGHWTRGPWWYRWNTNGCAFGAKDNSGRFMDHPTVFLSHNQFLCGGIPDPQVPQARDIIMGSAAAAVSGFCHGMACAVKMVMDHVGLVLSPGPL
SIO_010081: LOC109575459
subclass of: SO_0000673
so part of: LOC109575459
location: join(9887..10017,12380..12528,13616..13719,14056..14184)
location: region:9887-14184:1
so has part: feature:9887-10017:1:exon
so has part: feature:12380-12528:1:exon
so has part: feature:13616-13719:1:exon
so has part: feature:14056-14184:1:exon

XP_019839160.1
type: Protein
SIO_000068: ncbiprotein

position:9887:1
position: 9887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14184:1
position: 14184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9887-10017:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12380-12528:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13616-13719:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14056-14184:1:exon

LOC109575459
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575459
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC109575459 isoform X1
translation: MEDCSQQRTCRIFHNNCPGKTRHVSPQGLLGNWPFDVQVDHPWRQIEXPRMEDHWHRRPITYSMTPSLESQGLRAATGHWTRGPWWYRWNTNGYPACGSQRDGMARVTLPLLPGASAATAWKLRVTTLWCVGEPWGKGPASPILRGWLETMCCLWLHETVQSCCLLLWVKVPWQRK
SIO_010081: LOC109575459
subclass of: SO_0000673
so part of: LOC109575459
location: join(9887..10017,12380..12528,12856..13106)
location: region:9887-13106:1
so has part: feature:9887-10017:1:exon
so has part: feature:12380-12528:1:exon
so has part: feature:12856-13106:1:exon

XP_019839159.1
type: Protein
SIO_000068: ncbiprotein

position:13106:1
position: 13106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9887-10017:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12380-12528:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12856-13106:1:exon

LOC109575289
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575289
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 107386..140929
location: region:107386-140929:1
so has part: feature:107386-140929:1:exon
subclass of: SO_0000011

109575289
type: Gene
SIO_000068: ncbigene

position:107386:1
position: 107386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140929:1
position: 140929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107386-140929:1:exon

LOC109575289
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575289
product: uncharacterized LOC109575289
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_002183199.1
SIO_010081: LOC109575289
subclass of: SO_0000673
so part of: LOC109575289
location: join(107386..109578,111544..111683,112055..112099,116154..116293,138997..139073,140846..140929)
location: region:107386-140929:1
so has part: feature:107386-109578:1:exon
so has part: feature:111544-111683:1:exon
so has part: feature:112055-112099:1:exon
so has part: feature:116154-116293:1:exon
so has part: feature:138997-139073:1:exon
so has part: feature:140846-140929:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:107386-109578:1:exon

position:109578:1
position: 109578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:111544-111683:1:exon

position:111544:1
position: 111544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:111683:1
position: 111683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:112055-112099:1:exon

position:112055:1
position: 112055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:112099:1
position: 112099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:116154-116293:1:exon

position:116154:1
position: 116154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:116293:1
position: 116293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:138997-139073:1:exon

position:138997:1
position: 138997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:139073:1
position: 139073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:140846-140929:1:exon

position:140846:1
position: 140846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575109
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575109
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(208517..232389)
location: region:208517-232389:-1
so has part: feature:208517-232389:-1:exon
subclass of: SO_0000010

109575109
type: Gene
SIO_000068: ncbigene

position:208517:-1
position: 208517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232389:-1
position: 232389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208517-232389:-1:exon

LOC109575109
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575109
product: ubiquitin-protein ligase E3A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 1 Protein, and 80% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983167.1
SIO_010081: LOC109575109
subclass of: SO_0000673
so part of: LOC109575109
location: complement(join(208517..208715,220007..220111,220995..221138,227896..227969,228065..228220,229636..229800,230394..230599,232365..232389))
location: region:208517-232389:-1
so has part: feature:232365-232389:-1:exon
so has part: feature:230394-230599:-1:exon
so has part: feature:229636-229800:-1:exon
so has part: feature:228065-228220:-1:exon
so has part: feature:227896-227969:-1:exon
so has part: feature:220995-221138:-1:exon
so has part: feature:220007-220111:-1:exon
so has part: feature:208517-208715:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:232365-232389:-1:exon

position:232365:-1
position: 232365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:230394-230599:-1:exon

position:230394:-1
position: 230394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:230599:-1
position: 230599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:229636-229800:-1:exon

position:229636:-1
position: 229636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229800:-1
position: 229800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:228065-228220:-1:exon

position:228065:-1
position: 228065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:228220:-1
position: 228220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:227896-227969:-1:exon

position:227896:-1
position: 227896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227969:-1
position: 227969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:220995-221138:-1:exon

position:220995:-1
position: 220995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221138:-1
position: 221138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:220007-220111:-1:exon

position:220007:-1
position: 220007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:220111:-1
position: 220111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:208517-208715:-1:exon

position:208715:-1
position: 208715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109575109
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575109
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A-like
translation: MFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFLDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGKSITGRKFPSSMFPLDTAPGRRPEGSRGALRTRRGPLALPLRARLRVSACRAAGRGVTQGPRSYC
SIO_010081: LOC109575109
subclass of: SO_0000673
so part of: LOC109575109
location: complement(join(208517..208715,220007..220111,220995..221138,227896..227969,228065..228220,229636..229800,230394..230597))
location: region:208517-230597:-1
so has part: feature:230394-230597:-1:exon
so has part: feature:229636-229800:-1:exon
so has part: feature:228065-228220:-1:exon
so has part: feature:227896-227969:-1:exon
so has part: feature:220995-221138:-1:exon
so has part: feature:220007-220111:-1:exon
so has part: feature:208517-208715:-1:exon

XP_019838726.1
type: Protein
SIO_000068: ncbiprotein

position:230597:-1
position: 230597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:230394-230597:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:229636-229800:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:228065-228220:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:227896-227969:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:220995-221138:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:220007-220111:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:208517-208715:-1:exon

LOC109575110
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575110
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(276841..288196)
location: region:276841-288196:-1
so has part: feature:276841-288196:-1:exon
subclass of: SO_0000010

109575110
type: Gene
SIO_000068: ncbigene

position:276841:-1
position: 276841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288196:-1
position: 288196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276841-288196:-1:exon

LOC109575110
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575110
product: ubiquitin-protein ligase E3A-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 ESTs, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983168.1
SIO_010081: LOC109575110
subclass of: SO_0000673
so part of: LOC109575110
location: complement(join(276841..278925,279889..280032,286786..286859,286956..287111,288119..288196))
location: region:276841-288196:-1
so has part: feature:288119-288196:-1:exon
so has part: feature:286956-287111:-1:exon
so has part: feature:286786-286859:-1:exon
so has part: feature:279889-280032:-1:exon
so has part: feature:276841-278925:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:288119-288196:-1:exon

position:288119:-1
position: 288119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:286956-287111:-1:exon

position:286956:-1
position: 286956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287111:-1
position: 287111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:286786-286859:-1:exon

position:286786:-1
position: 286786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286859:-1
position: 286859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:279889-280032:-1:exon

position:279889:-1
position: 279889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280032:-1
position: 280032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:276841-278925:-1:exon

position:278925:-1
position: 278925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109575110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575110
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A-like
translation: MWLGTEPLLEKDAPSGRQCTAWCGSGEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVVIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
SIO_010081: LOC109575110
subclass of: SO_0000673
so part of: LOC109575110
location: complement(join(278805..278925,279889..280032,286786..286859,286956..287111,288119..288196))
location: region:278805-288196:-1
so has part: feature:288119-288196:-1:exon
so has part: feature:286956-287111:-1:exon
so has part: feature:286786-286859:-1:exon
so has part: feature:279889-280032:-1:exon
so has part: feature:278805-278925:-1:exon

XP_019838727.1
type: Protein
SIO_000068: ncbiprotein

position:278805:-1
position: 278805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288119-288196:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:286956-287111:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:286786-286859:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:279889-280032:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:278805-278925:-1:exon

LOC109575111
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575111
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(288561..340405)
location: region:288561-340405:-1
so has part: feature:288561-340405:-1:exon
subclass of: SO_0000010

109575111
type: Gene
SIO_000068: ncbigene

position:288561:-1
position: 288561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:340405:-1
position: 340405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:288561-340405:-1:exon

LOC109575111
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575111
product: ubiquitin-protein ligase E3A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 260 samples with support for all annotated introns
transcript id: XM_019983169.1
SIO_010081: LOC109575111
subclass of: SO_0000673
so part of: LOC109575111
location: complement(join(288561..288713,289307..289512,292177..292321,300200..301446,308068..308372,334381..334425,337692..337811,340336..340405))
location: region:288561-340405:-1
so has part: feature:340336-340405:-1:exon
so has part: feature:337692-337811:-1:exon
so has part: feature:334381-334425:-1:exon
so has part: feature:308068-308372:-1:exon
so has part: feature:300200-301446:-1:exon
so has part: feature:292177-292321:-1:exon
so has part: feature:289307-289512:-1:exon
so has part: feature:288561-288713:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:340336-340405:-1:exon

position:340336:-1
position: 340336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:337692-337811:-1:exon

position:337692:-1
position: 337692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:337811:-1
position: 337811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:334381-334425:-1:exon

position:334381:-1
position: 334381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:334425:-1
position: 334425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:308068-308372:-1:exon

position:308068:-1
position: 308068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308372:-1
position: 308372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:300200-301446:-1:exon

position:300200:-1
position: 300200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301446:-1
position: 301446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:292177-292321:-1:exon

position:292177:-1
position: 292177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:292321:-1
position: 292321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:289307-289512:-1:exon

position:289307:-1
position: 289307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289512:-1
position: 289512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:288561-288713:-1:exon

position:288713:-1
position: 288713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109575111
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575111
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A
translation: MATACKRSSGEPQSDDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFRRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGASNNCSDIKMNKKDGQGARDDFKDVTYLTEEMVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKSLQGKDEDKDEDEKEKAACSAAAMEEDSEASSSRISDSSQGDNNLQKLGPDDVSVDIEAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLVRLWSKYSADQIRRMMETFQQLITYKVISTDFNNRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPLPESSELTLQELLGEERRNKKGPRVDPLETELAVKTLDCRKPLIPFEEFINEPLNDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFLDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPLP
SIO_010081: LOC109575111
subclass of: SO_0000673
so part of: LOC109575111
location: complement(join(288561..288713,289307..289512,292177..292321,300200..301446,308068..308372,334381..334425,337692..337711))
location: region:288561-337711:-1
so has part: feature:337692-337711:-1:exon
so has part: feature:334381-334425:-1:exon
so has part: feature:308068-308372:-1:exon
so has part: feature:300200-301446:-1:exon
so has part: feature:292177-292321:-1:exon
so has part: feature:289307-289512:-1:exon
so has part: feature:288561-288713:-1:exon

XP_019838728.1
type: Protein
SIO_000068: ncbiprotein

position:337711:-1
position: 337711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337692-337711:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:334381-334425:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:308068-308372:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:300200-301446:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:292177-292321:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:289307-289512:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:288561-288713:-1:exon

LOC109575263
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575263
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(622731..627919)
location: region:622731-627919:-1
so has part: feature:622731-627919:-1:exon

109575263
type: Gene
SIO_000068: ncbigene

position:622731:-1
position: 622731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:627919:-1
position: 627919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622731-627919:-1:exon

LOC109575263
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575263
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575263
subclass of: SO_0000673
so part of: LOC109575263
location: complement(622731..623359)
location: region:622731-623359:-1
so has part: feature:622731-623359:-1:exon

position:623359:-1
position: 623359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622731-623359:-1:exon

LOC109575263
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575263
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575263
subclass of: SO_0000673
so part of: LOC109575263
location: complement(627911..627919)
location: region:627911-627919:-1
so has part: feature:627911-627919:-1:exon

position:627911:-1
position: 627911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:627911-627919:-1:exon

ATP10A
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: ATP10A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(734086..918832)
location: region:734086-918832:-1
so has part: feature:734086-918832:-1:exon
subclass of: SO_0000010

109575112
type: Gene
SIO_000068: ncbigene

position:734086:-1
position: 734086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:918832:-1
position: 918832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:734086-918832:-1:exon

ATP10A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ATP10A
product: ATPase phospholipid transporting 10A (putative)
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983170.1
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: complement(join(734086..735386,735530..735717,736116..736220,736299..736379,738730..738930,742967..743092,746790..746866,749565..749874,759811..759995,761509..761635,761713..761816,772728..773295,775116..775310,776668..776885,783444..783696,785530..785660,786908..787039,787402..787508,796029..796114,843290..843494,915907..916206,916472..916585,916701..916791,918802..918832))
location: region:734086-918832:-1
so has part: feature:918802-918832:-1:exon
so has part: feature:916701-916791:-1:exon
so has part: feature:916472-916585:-1:exon
so has part: feature:915907-916206:-1:exon
so has part: feature:843290-843494:-1:exon
so has part: feature:796029-796114:-1:exon
so has part: feature:787402-787508:-1:exon
so has part: feature:786908-787039:-1:exon
so has part: feature:785530-785660:-1:exon
so has part: feature:783444-783696:-1:exon
so has part: feature:776668-776885:-1:exon
so has part: feature:775116-775310:-1:exon
so has part: feature:772728-773295:-1:exon
so has part: feature:761713-761816:-1:exon
so has part: feature:761509-761635:-1:exon
so has part: feature:759811-759995:-1:exon
so has part: feature:749565-749874:-1:exon
so has part: feature:746790-746866:-1:exon
so has part: feature:742967-743092:-1:exon
so has part: feature:738730-738930:-1:exon
so has part: feature:736299-736379:-1:exon
so has part: feature:736116-736220:-1:exon
so has part: feature:735530-735717:-1:exon
so has part: feature:734086-735386:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:918802-918832:-1:exon

position:918802:-1
position: 918802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:916701-916791:-1:exon

position:916701:-1
position: 916701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916791:-1
position: 916791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:916472-916585:-1:exon

position:916472:-1
position: 916472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916585:-1
position: 916585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:915907-916206:-1:exon

position:915907:-1
position: 915907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916206:-1
position: 916206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:843290-843494:-1:exon

position:843290:-1
position: 843290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:843494:-1
position: 843494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:796029-796114:-1:exon

position:796029:-1
position: 796029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:796114:-1
position: 796114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:787402-787508:-1:exon

position:787402:-1
position: 787402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:787508:-1
position: 787508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:786908-787039:-1:exon

position:786908:-1
position: 786908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:787039:-1
position: 787039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:785530-785660:-1:exon

position:785530:-1
position: 785530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:785660:-1
position: 785660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:783444-783696:-1:exon

position:783444:-1
position: 783444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:783696:-1
position: 783696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:776668-776885:-1:exon

position:776668:-1
position: 776668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:776885:-1
position: 776885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:775116-775310:-1:exon

position:775116:-1
position: 775116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775310:-1
position: 775310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:772728-773295:-1:exon

position:772728:-1
position: 772728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:773295:-1
position: 773295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:761713-761816:-1:exon

position:761713:-1
position: 761713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:761816:-1
position: 761816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:761509-761635:-1:exon

position:761509:-1
position: 761509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:761635:-1
position: 761635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:759811-759995:-1:exon

position:759811:-1
position: 759811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:759995:-1
position: 759995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:749565-749874:-1:exon

position:749565:-1
position: 749565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:749874:-1
position: 749874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:746790-746866:-1:exon

position:746790:-1
position: 746790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:746866:-1
position: 746866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:742967-743092:-1:exon

position:742967:-1
position: 742967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:743092:-1
position: 743092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:738730-738930:-1:exon

position:738730:-1
position: 738730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:738930:-1
position: 738930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:736299-736379:-1:exon

position:736299:-1
position: 736299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736379:-1
position: 736379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:736116-736220:-1:exon

position:736116:-1
position: 736116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736220:-1
position: 736220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:735530-735717:-1:exon

position:735530:-1
position: 735530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:735717:-1
position: 735717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:734086-735386:-1:exon

position:735386:-1
position: 735386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP10A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ATP10A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable phospholipid-transporting ATPase VA
translation: MGMKKACSEEGGGCQPGPTDPFPGGRGASHTTPSPVSSGGGRGVGWGRECPSGKAEAGXETRGPGGGRGGAGRPLTELSRLRGGAQHLADNRLKTTKYTLLSFLPKNLFEQFHRLANVYFVFIALLNFVPAVNAFQPGLALAPVLFILAVTAFKDLWEDYSRHRSDHEINHLGCLVFSREEEQYVNRFWKEIRVGDFVRLRCNETIPADILLLSSSDPDGLCHIETANLDGETNLKRRQVVRGFSELVSEFNPLTFTSIIECEKPNNDLTRFRGCIIHDNGKKAGLYKENLLLRGCTLRNTEAVVGIVIYAGHETKALLNNSGPRYKRSRLERQMNCDVLWCVLLLICMSLFSAIGHGLWVQRYQEKKSLFDVPESDGTSLSPVPAAVYSFLTMIIVLQVLIPISLYVSIEIVKVCQVYFINQDIELYDEETDSQLQCRALNITEDLGQIQYIFSDKTGTLTENKMVFRRCTVSGIEYSHDANAQRLARYQEADSEEEEVVPRGGSLPLRGGTGGHPSARAAHQSQSSRAHRRTGSRAEAXXXSMLTELTAFSSPMEKDVTPDPKLLEKVHECGRCLASARHQEHPLDHLSPELSDIFDFFIALTICNTVVVTSPDQPRQKVRVRFELKSPVKTIEDFLRRFTPSRLTLGGSSXGSASMAAKSAPKASLLSTXANDGALLRLEERLGPGAPCLASNGYSSAADSWAAEQSATGPEPGAELRYEAESPDEAALVHAARAYSCALVGRLHDQVSVELPHLGRLTFELLHTLGFDSIRKRMSVVIRHPLTDEINVYTKGADSVVMDLLLPCSTDDARGRHQMKIRSKTQNYLNLYAVEGLRTLCIAKRVLSKEEYACWLQSHLEAESAVDNREELLFQSAIRLETNLHLLGATGIEDRLQDGVPETIAKLRQAGLQIWVLTGDKQETAVNIAHACKLLDHDEEVITLNAESQEACEALLDQCLRYVQSRSPQRTAGSLSVGFAPLCPPSEATASGPSLVIDGRSLAYALQKNLEDKFLFLAKQCRSVLCCRSTPLQKSMVVKLVRSKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPKFRYLERLLIVHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFYCGFSASAMIDQWYLIFFNLLFSSLPQLVTGVLDKDVPADVLLAEPQLYRSGQNMEEYRPRTFWLNMADAAFQSLVCFFIPYLAYYDSDTDIFTWGTPITAVALFTFLLHLGIETKTWTWLNWTACGFSVVLFFTVALIYNASCATCYPPSNPYWTMQTLMGDPVFYSICLLAPVAALLPRLFFKALQGTLFPTPLQLGRQLAKRSPGKFRAPRETSAQGHIPEEARTKLPGQRSVSVARSVSRDCSSQVSQGTWQPACSPEAGGEPSAVDMGMPWREGTLPDRLDSQPSXSSSPGPVAXEGCPGGSRMKPMSASRPAPLPSVFSVPGLSSLNWMSSLSLVSGLGSVLQFSRSGLPMDKRDSDFLPGSAPPDQDLCDLSGQTTDCF
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: complement(join(734768..735386,735530..735717,736116..736220,736299..736379,738730..738930,742967..743092,746790..746866,749565..749874,759811..759995,761509..761635,761713..761816,772728..773295,775116..775310,776668..776885,783444..783696,785530..785660,786908..787039,787402..787508,796029..796114,843290..843494,915907..916206,916472..916585,916701..916791,918802..918832))
location: region:734768-918832:-1
so has part: feature:918802-918832:-1:exon
so has part: feature:916701-916791:-1:exon
so has part: feature:916472-916585:-1:exon
so has part: feature:915907-916206:-1:exon
so has part: feature:843290-843494:-1:exon
so has part: feature:796029-796114:-1:exon
so has part: feature:787402-787508:-1:exon
so has part: feature:786908-787039:-1:exon
so has part: feature:785530-785660:-1:exon
so has part: feature:783444-783696:-1:exon
so has part: feature:776668-776885:-1:exon
so has part: feature:775116-775310:-1:exon
so has part: feature:772728-773295:-1:exon
so has part: feature:761713-761816:-1:exon
so has part: feature:761509-761635:-1:exon
so has part: feature:759811-759995:-1:exon
so has part: feature:749565-749874:-1:exon
so has part: feature:746790-746866:-1:exon
so has part: feature:742967-743092:-1:exon
so has part: feature:738730-738930:-1:exon
so has part: feature:736299-736379:-1:exon
so has part: feature:736116-736220:-1:exon
so has part: feature:735530-735717:-1:exon
so has part: feature:734768-735386:-1:exon

XP_019838729.1
type: Protein
SIO_000068: ncbiprotein

position:734768:-1
position: 734768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:918802-918832:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:916701-916791:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:916472-916585:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:915907-916206:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:843290-843494:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:796029-796114:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:787402-787508:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:786908-787039:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:785530-785660:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:783444-783696:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:776668-776885:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:775116-775310:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:772728-773295:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:761713-761816:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:761509-761635:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:759811-759995:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:749565-749874:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:746790-746866:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:742967-743092:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:738730-738930:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:736299-736379:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:736116-736220:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:735530-735717:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:734768-735386:-1:exon

TRNAE-UUC
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: TRNAE-UUC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1206166..1206237)
location: region:1206166-1206237:-1
so has part: feature:1206166-1206237:-1:exon
subclass of: SO_0000663

109575787
type: Gene
SIO_000068: ncbigene

position:1206166:-1
position: 1206166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1206237:-1
position: 1206237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1206166-1206237:-1:exon

TRNAE-UUC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9915
gene: TRNAE-UUC
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glutamic acid (anticodon UUC); tRNA features were annotated by tRNAscan-SE; Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1206202..1206204),aa:Glu, seq:ttc)
SIO_010081: TRNAE-UUC
subclass of: SO_0000673
so part of: TRNAE-UUC
location: complement(1206166..1206237)
location: region:1206166-1206237:-1
so has part: feature:1206166-1206237:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1206166-1206237:-1:exon

LOC109575113
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1580550..1620935)
location: region:1580550-1620935:-1
so has part: feature:1580550-1620935:-1:exon

109575113
type: Gene
SIO_000068: ncbigene

position:1580550:-1
position: 1580550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1620935:-1
position: 1620935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1580550-1620935:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1580550..1580804)
location: region:1580550-1580804:-1
so has part: feature:1580550-1580804:-1:exon

position:1580804:-1
position: 1580804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1580550-1580804:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1590256..1590420)
location: region:1590256-1590420:-1
so has part: feature:1590256-1590420:-1:exon

position:1590256:-1
position: 1590256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1590420:-1
position: 1590420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1590256-1590420:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1593874..1594834)
location: region:1593874-1594834:-1
so has part: feature:1593874-1594834:-1:exon

position:1593874:-1
position: 1593874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1594834:-1
position: 1594834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1593874-1594834:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1597943..1598126)
location: region:1597943-1598126:-1
so has part: feature:1597943-1598126:-1:exon

position:1597943:-1
position: 1597943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1598126:-1
position: 1598126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1597943-1598126:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1598831..1599044)
location: region:1598831-1599044:-1
so has part: feature:1598831-1599044:-1:exon

position:1598831:-1
position: 1598831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1599044:-1
position: 1599044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1598831-1599044:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1600735..1600870)
location: region:1600735-1600870:-1
so has part: feature:1600735-1600870:-1:exon

position:1600735:-1
position: 1600735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1600870:-1
position: 1600870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1600735-1600870:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1601154..1601187)
location: region:1601154-1601187:-1
so has part: feature:1601154-1601187:-1:exon

position:1601154:-1
position: 1601154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1601187:-1
position: 1601187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1601154-1601187:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1602732..1602899)
location: region:1602732-1602899:-1
so has part: feature:1602732-1602899:-1:exon

position:1602732:-1
position: 1602732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1602899:-1
position: 1602899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1602732-1602899:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1604367..1604518)
location: region:1604367-1604518:-1
so has part: feature:1604367-1604518:-1:exon

position:1604367:-1
position: 1604367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1604518:-1
position: 1604518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1604367-1604518:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1620444..1620610)
location: region:1620444-1620610:-1
so has part: feature:1620444-1620610:-1:exon

position:1620444:-1
position: 1620444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1620610:-1
position: 1620610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1620444-1620610:-1:exon

LOC109575113
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575113
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575113
subclass of: SO_0000673
so part of: LOC109575113
location: complement(1620731..1620935)
location: region:1620731-1620935:-1
so has part: feature:1620731-1620935:-1:exon

position:1620731:-1
position: 1620731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1620731-1620935:-1:exon

LOC109575114
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575114
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1865089..1907766
location: region:1865089-1907766:1
so has part: feature:1865089-1907766:1:exon
subclass of: SO_0000010

109575114
type: Gene
SIO_000068: ncbigene

position:1865089:1
position: 1865089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1907766:1
position: 1907766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1865089-1907766:1:exon

LOC109575114
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575114
product: frizzled-3-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 55% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983171.1
SIO_010081: LOC109575114
subclass of: SO_0000673
so part of: LOC109575114
location: join(1865089..1865366,1891197..1891394,1906727..1907766)
location: region:1865089-1907766:1
so has part: feature:1865089-1865366:1:exon
so has part: feature:1891197-1891394:1:exon
so has part: feature:1906727-1907766:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1865089-1865366:1:exon

position:1865366:1
position: 1865366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1891197-1891394:1:exon

position:1891197:1
position: 1891197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1891394:1
position: 1891394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1906727-1907766:1:exon

position:1906727:1
position: 1906727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575114
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575114
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: frizzled-3-like
translation: MAMSWIICXLWPLTMFVGHIGRHSLFSXEPITLRMCQDLPYNTVFXPNLLNHYDQQXAVLAMEPFRPVVNLDCSRGFRPSPCALCAPICVEYSRVTPPCHRFCQRAHSECLKLMELFGVAWPEDMECSRFPDCGEPYPRLVDLNLAGDPXEGASVAVQRDYGFWCXXELKIDPDLGCCFLHMRDCSPPCPNMYFRREELSFARYFIGLISVICLSATLFTFLTFLIDVIRFQYSERTVRIYAVCYMMVLLIFFIGFLLEDRVACNSSSPAQYKASTVTQGSHNKTCIMLLMILYFFTMAGSIWWVILTIXWFLAAVPKSGSEAIGKEALLFHASVWGVPGTLTIILLAMNKIEGDSISGVCFVGLYDVDALRYFVLAPLCLYVVFGVSLLLAGIISLNRVRVEIPLZKVNQDKLVKFMIWIGVFSTLYLVPLMVVIGCYFYEQAYRGIWETTWIQERCRAYHIPCPYKVRETLF
SIO_010081: LOC109575114
subclass of: SO_0000673
so part of: LOC109575114
location: join(1865180..1865366,1891197..1891394,1906727..1907766)
location: region:1865180-1907766:1
so has part: feature:1865180-1865366:1:exon
so has part: feature:1891197-1891394:1:exon
so has part: feature:1906727-1907766:1:exon

XP_019838730.1
type: Protein
SIO_000068: ncbiprotein

position:1865180:1
position: 1865180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1865180-1865366:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1891197-1891394:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1906727-1907766:1:exon

LOC109575115
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1959332..1984974
location: region:1959332-1984974:1
so has part: feature:1959332-1984974:1:exon

109575115
type: Gene
SIO_000068: ncbigene

position:1959332:1
position: 1959332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1984974:1
position: 1984974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1959332-1984974:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1959332..1959367
location: region:1959332-1959367:1
so has part: feature:1959332-1959367:1:exon

position:1959367:1
position: 1959367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1959332-1959367:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1963683..1963784
location: region:1963683-1963784:1
so has part: feature:1963683-1963784:1:exon

position:1963683:1
position: 1963683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1963784:1
position: 1963784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1963683-1963784:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1964255..1964763
location: region:1964255-1964763:1
so has part: feature:1964255-1964763:1:exon

position:1964255:1
position: 1964255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1964763:1
position: 1964763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1964255-1964763:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1965672..1965806
location: region:1965672-1965806:1
so has part: feature:1965672-1965806:1:exon

position:1965672:1
position: 1965672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1965806:1
position: 1965806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1965672-1965806:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1968951..1969030
location: region:1968951-1969030:1
so has part: feature:1968951-1969030:1:exon

position:1968951:1
position: 1968951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1969030:1
position: 1969030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1968951-1969030:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1971650..1971785
location: region:1971650-1971785:1
so has part: feature:1971650-1971785:1:exon

position:1971650:1
position: 1971650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1971785:1
position: 1971785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1971650-1971785:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1974416..1974639
location: region:1974416-1974639:1
so has part: feature:1974416-1974639:1:exon

position:1974416:1
position: 1974416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1974639:1
position: 1974639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1974416-1974639:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1976418..1976640
location: region:1976418-1976640:1
so has part: feature:1976418-1976640:1:exon

position:1976418:1
position: 1976418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1976640:1
position: 1976640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1976418-1976640:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1982229..1982380
location: region:1982229-1982380:1
so has part: feature:1982229-1982380:1:exon

position:1982229:1
position: 1982229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1982380:1
position: 1982380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1982229-1982380:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1983224..1983400
location: region:1983224-1983400:1
so has part: feature:1983224-1983400:1:exon

position:1983224:1
position: 1983224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1983400:1
position: 1983400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1983224-1983400:1:exon

LOC109575115
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575115
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575115
subclass of: SO_0000673
so part of: LOC109575115
location: 1984677..1984974
location: region:1984677-1984974:1
so has part: feature:1984677-1984974:1:exon

position:1984677:1
position: 1984677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1984677-1984974:1:exon

LOC109575116
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575116
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2030066..2060514
location: region:2030066-2060514:1
so has part: feature:2030066-2060514:1:exon
subclass of: SO_0000010

109575116
type: Gene
SIO_000068: ncbigene

position:2030066:1
position: 2030066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2060514:1
position: 2060514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2030066-2060514:1:exon

LOC109575116
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575116
product: liprin-alpha-1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 21% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983172.1
SIO_010081: LOC109575116
subclass of: SO_0000673
so part of: LOC109575116
location: join(2030066..2030182,2031378..2031476,2031943..2032107,2032861..2032935,2033309..2033421,2033635..2033854,2035698..2035757,2037146..2037277,2038495..2038677,2041014..2041093,2043696..2043831,2046530..2046753,2048519..2048750,2054358..2054509,2055355..2055527,2057567..2057667,2060218..2060385,2060464..2060514)
location: region:2030066-2060514:1
so has part: feature:2030066-2030182:1:exon
so has part: feature:2031378-2031476:1:exon
so has part: feature:2031943-2032107:1:exon
so has part: feature:2032861-2032935:1:exon
so has part: feature:2033309-2033421:1:exon
so has part: feature:2033635-2033854:1:exon
so has part: feature:2035698-2035757:1:exon
so has part: feature:2037146-2037277:1:exon
so has part: feature:2038495-2038677:1:exon
so has part: feature:2041014-2041093:1:exon
so has part: feature:2043696-2043831:1:exon
so has part: feature:2046530-2046753:1:exon
so has part: feature:2048519-2048750:1:exon
so has part: feature:2054358-2054509:1:exon
so has part: feature:2055355-2055527:1:exon
so has part: feature:2057567-2057667:1:exon
so has part: feature:2060218-2060385:1:exon
so has part: feature:2060464-2060514:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2030066-2030182:1:exon

position:2030182:1
position: 2030182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2031378-2031476:1:exon

position:2031378:1
position: 2031378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2031476:1
position: 2031476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2031943-2032107:1:exon

position:2031943:1
position: 2031943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2032107:1
position: 2032107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2032861-2032935:1:exon

position:2032861:1
position: 2032861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2032935:1
position: 2032935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2033309-2033421:1:exon

position:2033309:1
position: 2033309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2033421:1
position: 2033421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2033635-2033854:1:exon

position:2033635:1
position: 2033635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2033854:1
position: 2033854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2035698-2035757:1:exon

position:2035698:1
position: 2035698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2035757:1
position: 2035757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2037146-2037277:1:exon

position:2037146:1
position: 2037146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2037277:1
position: 2037277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2038495-2038677:1:exon

position:2038495:1
position: 2038495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2038677:1
position: 2038677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2041014-2041093:1:exon

position:2041014:1
position: 2041014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2041093:1
position: 2041093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2043696-2043831:1:exon

position:2043696:1
position: 2043696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2043831:1
position: 2043831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2046530-2046753:1:exon

position:2046530:1
position: 2046530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2046753:1
position: 2046753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2048519-2048750:1:exon

position:2048519:1
position: 2048519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2048750:1
position: 2048750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2054358-2054509:1:exon

position:2054358:1
position: 2054358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2054509:1
position: 2054509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2055355-2055527:1:exon

position:2055355:1
position: 2055355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2055527:1
position: 2055527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2057567-2057667:1:exon

position:2057567:1
position: 2057567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2057667:1
position: 2057667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2060218-2060385:1:exon

position:2060218:1
position: 2060218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2060385:1
position: 2060385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2060464-2060514:1:exon

position:2060464:1
position: 2060464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575116
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575116
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 3 bases at 3 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:2032870..2032872,aa:OTHER)
transl except: (pos:join(2033420..2033421,2033635), aa:OTHER)
transl except: (pos:2046596..2046598,aa:OTHER)
product: LOW QUALITY PROTEIN: liprin-alpha-1-like
translation: MGHRRARLWALFQHCNPKAKAKTRKDLASAHILEAERPEEFPTPEELKIYREQFLKREEEIAELKAKRNNTRLLLEHLECLVSRYMPSLRMTVGKXQARSPAGMTREVEVLRAQKLLFEHDKTLDKKLRAXLRVALKRCSLLEEELGATHKEQMILSEENNEEKILTDMVFDVHHEQENMPSANGKESPXPSDGSLSXEEDLAKVIKLQEIIERQSREQSQMKEXLAALSAHVTELEQDLDTARKDLLKSEDVNRKLEQDVREDDINDKLENEIANKDSRHQQIEDKNRQLQESLELVEKLQQTLRRAEMLPEVEAEQAQRVASLSKAGERHGSIEDRLCQMEAQLEEKNKELQXVPVLTGRWRLGERCGLGGGQHCLSPPLPSLASSDQLILNLETLRAKVDQTRLRGAPFHHSRPHLGSXPDLRSPVAGRPADSLGNGAVLRCPQKGRLAALHDEPSEVQTLKEQDWERAQQASVLADMAXAFESNEGVSDGEGDRVTLFSSATQLSPSRQADAKTLSAMLQEQLDAINEEIXLIEEEKENTEQQAEETESREGRGSLGSLRLFKSVSCLNLLPASSHAGSCPPHSGHSKPRRRQHSPAQEGHRLGIMTLLPALREEVGDDKTAIKCETSTLAWPRSLXLGRLHTGALHTATHEDLRDAHNSTGSQDSPRNNPSSXXTRQDSLHKAPKKKGIKSSISRLFXKKEKGRPEHPGKEXLGRAAXAPQVIPKDAPPARAIVLLLWGCLSVLRSXRQRGPGQGSLVNPDTLGPVPSENVHAGRGRQHXRCGKDTYAPLREGRRPCSDQSGGSRGVGSVPLRDQASLYSP
SIO_010081: LOC109575116
subclass of: SO_0000673
so part of: LOC109575116
location: join(2030066..2030182,2031378..2031476,2031943..2032107,2032861..2032935,2033309..2033421,2033635..2033854,2035698..2035757,2037146..2037277,2038495..2038677,2041014..2041093,2043696..2043831,2046530..2046753,2048519..2048750,2054358..2054509,2055355..2055527,2057567..2057667,2060218..2060385,2060464..2060514)
location: region:2030066-2060514:1
so has part: feature:2030066-2030182:1:exon
so has part: feature:2031378-2031476:1:exon
so has part: feature:2031943-2032107:1:exon
so has part: feature:2032861-2032935:1:exon
so has part: feature:2033309-2033421:1:exon
so has part: feature:2033635-2033854:1:exon
so has part: feature:2035698-2035757:1:exon
so has part: feature:2037146-2037277:1:exon
so has part: feature:2038495-2038677:1:exon
so has part: feature:2041014-2041093:1:exon
so has part: feature:2043696-2043831:1:exon
so has part: feature:2046530-2046753:1:exon
so has part: feature:2048519-2048750:1:exon
so has part: feature:2054358-2054509:1:exon
so has part: feature:2055355-2055527:1:exon
so has part: feature:2057567-2057667:1:exon
so has part: feature:2060218-2060385:1:exon
so has part: feature:2060464-2060514:1:exon

XP_019838731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2030066-2030182:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2031378-2031476:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2031943-2032107:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2032861-2032935:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2033309-2033421:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2033635-2033854:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2035698-2035757:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2037146-2037277:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2038495-2038677:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2041014-2041093:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2043696-2043831:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2046530-2046753:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2048519-2048750:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2054358-2054509:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2055355-2055527:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2057567-2057667:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2060218-2060385:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2060464-2060514:1:exon

LOC109575285
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575285
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2075732..2076912
location: region:2075732-2076912:1
so has part: feature:2075732-2076912:1:exon
subclass of: SO_0000011

109575285
type: Gene
SIO_000068: ncbigene

position:2075732:1
position: 2075732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2076912:1
position: 2076912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2075732-2076912:1:exon

LOC109575285
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575285
product: uncharacterized LOC109575285
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 130 samples with support for all annotated introns
transcript id: XR_002183198.1
SIO_010081: LOC109575285
subclass of: SO_0000673
so part of: LOC109575285
location: join(2075732..2076108,2076871..2076912)
location: region:2075732-2076912:1
so has part: feature:2075732-2076108:1:exon
so has part: feature:2076871-2076912:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2075732-2076108:1:exon

position:2076108:1
position: 2076108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2076871-2076912:1:exon

position:2076871:1
position: 2076871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575118
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575118
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2229325..2230279
location: region:2229325-2230279:1
so has part: feature:2229325-2230279:1:exon

109575118
type: Gene
SIO_000068: ncbigene

position:2229325:1
position: 2229325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2230279:1
position: 2230279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2229325-2230279:1:exon

LOC109575118
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575118
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC109575118
subclass of: SO_0000673
so part of: LOC109575118
location: 2229325..2230279
location: region:2229325-2230279:1
so has part: feature:2229325-2230279:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2229325-2230279:1:exon

LOC109575119
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575119
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2234429..2235427
location: region:2234429-2235427:1
so has part: feature:2234429-2235427:1:exon

109575119
type: Gene
SIO_000068: ncbigene

position:2234429:1
position: 2234429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2235427:1
position: 2235427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2234429-2235427:1:exon

LOC109575119
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575119
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
pseudo: true
SIO_010081: LOC109575119
subclass of: SO_0000673
so part of: LOC109575119
location: 2234429..2235427
location: region:2234429-2235427:1
so has part: feature:2234429-2235427:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2234429-2235427:1:exon

LOC109575120
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575120
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2243127..2244142
location: region:2243127-2244142:1
so has part: feature:2243127-2244142:1:exon

109575120
type: Gene
SIO_000068: ncbigene

position:2243127:1
position: 2243127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2244142:1
position: 2244142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2243127-2244142:1:exon

LOC109575120
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575120
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC109575120
subclass of: SO_0000673
so part of: LOC109575120
location: 2243127..2244142
location: region:2243127-2244142:1
so has part: feature:2243127-2244142:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2243127-2244142:1:exon

LOC109575121
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575121
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2250384..2251538)
location: region:2250384-2251538:-1
so has part: feature:2250384-2251538:-1:exon

109575121
type: Gene
SIO_000068: ncbigene

position:2250384:-1
position: 2250384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2251538:-1
position: 2251538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2250384-2251538:-1:exon

LOC109575121
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575121
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 27% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575121
subclass of: SO_0000673
so part of: LOC109575121
location: complement(2250384..2251538)
location: region:2250384-2251538:-1
so has part: feature:2250384-2251538:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2250384-2251538:-1:exon

LOC109575122
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575122
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2257485..2447776)
location: region:2257485-2447776:-1
so has part: feature:2257485-2447776:-1:exon

109575122
type: Gene
SIO_000068: ncbigene

position:2257485:-1
position: 2257485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2447776:-1
position: 2447776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2257485-2447776:-1:exon

LOC109575122
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575122
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC109575122
subclass of: SO_0000673
so part of: LOC109575122
location: complement(2257485..2258214)
location: region:2257485-2258214:-1
so has part: feature:2257485-2258214:-1:exon

position:2258214:-1
position: 2258214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2257485-2258214:-1:exon

LOC109575122
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575122
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC109575122
subclass of: SO_0000673
so part of: LOC109575122
location: complement(2258505..2258618)
location: region:2258505-2258618:-1
so has part: feature:2258505-2258618:-1:exon

position:2258505:-1
position: 2258505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2258618:-1
position: 2258618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2258505-2258618:-1:exon

LOC109575122
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575122
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC109575122
subclass of: SO_0000673
so part of: LOC109575122
location: complement(2258848..2258991)
location: region:2258848-2258991:-1
so has part: feature:2258848-2258991:-1:exon

position:2258848:-1
position: 2258848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2258991:-1
position: 2258991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2258848-2258991:-1:exon

LOC109575122
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575122
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC109575122
subclass of: SO_0000673
so part of: LOC109575122
location: complement(2447512..2447776)
location: region:2447512-2447776:-1
so has part: feature:2447512-2447776:-1:exon

position:2447512:-1
position: 2447512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2447512-2447776:-1:exon

GABRB3
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: GABRB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2485715..2573245)
location: region:2485715-2573245:-1
so has part: feature:2485715-2573245:-1:exon
subclass of: SO_0000010

109575755
type: Gene
SIO_000068: ncbigene

position:2485715:-1
position: 2485715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2573245:-1
position: 2573245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2485715-2573245:-1:exon

GABRB3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: GABRB3
product: gamma-aminobutyric acid type A receptor beta3 subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 53 ESTs, 20 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_019984041.1
SIO_010081: GABRB3
subclass of: SO_0000673
so part of: GABRB3
location: complement(join(2485715..2490244,2501790..2502034,2508300..2508452,2533467..2533604,2536093..2536175,2573030..2573245))
location: region:2485715-2573245:-1
so has part: feature:2573030-2573245:-1:exon
so has part: feature:2536093-2536175:-1:exon
so has part: feature:2533467-2533604:-1:exon
so has part: feature:2508300-2508452:-1:exon
so has part: feature:2501790-2502034:-1:exon
so has part: feature:2485715-2490244:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2573030-2573245:-1:exon

position:2573030:-1
position: 2573030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2536093-2536175:-1:exon

position:2536093:-1
position: 2536093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2536175:-1
position: 2536175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2533467-2533604:-1:exon

position:2533467:-1
position: 2533467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2533604:-1
position: 2533604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2508300-2508452:-1:exon

position:2508300:-1
position: 2508300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2508452:-1
position: 2508452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2501790-2502034:-1:exon

position:2501790:-1
position: 2501790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2502034:-1
position: 2502034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2485715-2490244:-1:exon

position:2490244:-1
position: 2490244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GABRB3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: GABRB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-3
translation: MYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKNAKAKNDRSKGDSNRVDAHGNILLTSLEVHNEMNEVAGXVGDTRNSARSFDNSGIQYRKQSMPREGHGRHMDRSVPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
SIO_010081: GABRB3
subclass of: SO_0000673
so part of: GABRB3
location: complement(join(2489906..2490244,2501790..2502034,2508300..2508452,2533467..2533604,2536093..2536175,2573030..2573235))
location: region:2489906-2573235:-1
so has part: feature:2573030-2573235:-1:exon
so has part: feature:2536093-2536175:-1:exon
so has part: feature:2533467-2533604:-1:exon
so has part: feature:2508300-2508452:-1:exon
so has part: feature:2501790-2502034:-1:exon
so has part: feature:2489906-2490244:-1:exon

XP_019839600.1
type: Protein
SIO_000068: ncbiprotein

position:2489906:-1
position: 2489906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2573235:-1
position: 2573235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2573030-2573235:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2536093-2536175:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2533467-2533604:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2508300-2508452:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2501790-2502034:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2489906-2490244:-1:exon

GABRA5
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2917821..3007981
location: region:2917821-3007981:1
so has part: feature:2917821-3007981:1:exon
subclass of: SO_0000010

109575269
type: Gene
SIO_000068: ncbigene

position:2917821:1
position: 2917821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3007981:1
position: 3007981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2917821-3007981:1:exon

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 22 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983266.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: join(2917821..2917956,2931241..2931362,2932154..2932221,2932314..2932534,2978081..2978163,2996092..2996235,2998613..2998765,3001341..3001552,3006685..3007981)
location: region:2917821-3007981:1
so has part: feature:2917821-2917956:1:exon
so has part: feature:2931241-2931362:1:exon
so has part: feature:2932154-2932221:1:exon
so has part: feature:2932314-2932534:1:exon
so has part: feature:2978081-2978163:1:exon
so has part: feature:2996092-2996235:1:exon
so has part: feature:2998613-2998765:1:exon
so has part: feature:3001341-3001552:1:exon
so has part: feature:3006685-3007981:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2917821-2917956:1:exon

position:2917956:1
position: 2917956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2931241-2931362:1:exon

position:2931241:1
position: 2931241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2931362:1
position: 2931362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2932154-2932221:1:exon

position:2932154:1
position: 2932154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2932221:1
position: 2932221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2932314-2932534:1:exon

position:2932314:1
position: 2932314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2932534:1
position: 2932534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2978081-2978163:1:exon

position:2978081:1
position: 2978081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2978163:1
position: 2978163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2996092-2996235:1:exon

position:2996092:1
position: 2996092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2996235:1
position: 2996235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2998613-2998765:1:exon

position:2998613:1
position: 2998613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2998765:1
position: 2998765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3001341-3001552:1:exon

position:3001341:1
position: 3001341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3001552:1
position: 3001552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3006685-3007981:1:exon

position:3006685:1
position: 3006685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5
translation: MDNGMFSSFIMIKNLLLFCISMNLASHFGFSQMPTSSVKAETDDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTAKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTINKSTNAYTTGKMTHPPNIPKEQTPAGTTNASXASVKPEDKASENKKTYNSISKIDKMSRIIFPLLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: join(2917871..2917956,2931241..2931362,2932154..2932221,2932314..2932534,2978081..2978163,2996092..2996235,2998613..2998765,3001341..3001552,3006685..3006984)
location: region:2917871-3006984:1
so has part: feature:2917871-2917956:1:exon
so has part: feature:2931241-2931362:1:exon
so has part: feature:2932154-2932221:1:exon
so has part: feature:2932314-2932534:1:exon
so has part: feature:2978081-2978163:1:exon
so has part: feature:2996092-2996235:1:exon
so has part: feature:2998613-2998765:1:exon
so has part: feature:3001341-3001552:1:exon
so has part: feature:3006685-3006984:1:exon

XP_019838825.1
type: Protein
SIO_000068: ncbiprotein

position:2917871:1
position: 2917871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3006984:1
position: 3006984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2917871-2917956:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2931241-2931362:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2932154-2932221:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2932314-2932534:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2978081-2978163:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2996092-2996235:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2998613-2998765:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3001341-3001552:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3006685-3006984:1:exon

LOC109575752
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575752
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3123070..3124229)
location: region:3123070-3124229:-1
so has part: feature:3123070-3124229:-1:exon

109575752
type: Gene
SIO_000068: ncbigene

position:3123070:-1
position: 3123070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3124229:-1
position: 3124229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3123070-3124229:-1:exon

LOC109575752
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575752
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 25 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575752
subclass of: SO_0000673
so part of: LOC109575752
location: complement(3123070..3123645)
location: region:3123070-3123645:-1
so has part: feature:3123070-3123645:-1:exon

position:3123645:-1
position: 3123645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3123070-3123645:-1:exon

LOC109575752
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575752
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 25 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575752
subclass of: SO_0000673
so part of: LOC109575752
location: complement(3123927..3124229)
location: region:3123927-3124229:-1
so has part: feature:3123927-3124229:-1:exon

position:3123927:-1
position: 3123927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3123927-3124229:-1:exon

LOC109575123
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575123
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3417362..3677206
location: region:3417362-3677206:1
so has part: feature:3417362-3677206:1:exon
subclass of: SO_0000010

109575123
type: Gene
SIO_000068: ncbigene

position:3417362:1
position: 3417362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3677206:1
position: 3677206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3417362-3677206:1:exon

LOC109575123
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575123
product: gamma-aminobutyric acid receptor subunit gamma-3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 59% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983173.1
SIO_010081: LOC109575123
subclass of: SO_0000673
so part of: LOC109575123
location: join(3417362..3417569,3583064..3583110,3583469..3583689,3586103..3586185,3677043..3677206)
location: region:3417362-3677206:1
so has part: feature:3417362-3417569:1:exon
so has part: feature:3583064-3583110:1:exon
so has part: feature:3583469-3583689:1:exon
so has part: feature:3586103-3586185:1:exon
so has part: feature:3677043-3677206:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3417362-3417569:1:exon

position:3417569:1
position: 3417569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3583064-3583110:1:exon

position:3583064:1
position: 3583064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3583110:1
position: 3583110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3583469-3583689:1:exon

position:3583469:1
position: 3583469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3583689:1
position: 3583689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3586103-3586185:1:exon

position:3586103:1
position: 3586103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3586185:1
position: 3586185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3677043-3677206:1:exon

position:3677043:1
position: 3677043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575123
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575123
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:3677189..3677191,aa:OTHER)
product: LOW QUALITY PROTEIN: gamma-aminobutyric acid receptor subunit gamma-3-like
translation: MPWAKVDVLSGTNHAKGGQHEPCAWLQPPPDLAARGRRWELTKFMAGLTGSATHADARALAGLMHKERLEVDRHYYSIQFIDYSWEYQIDIFFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVQTSAGKRXLKEV
SIO_010081: LOC109575123
subclass of: SO_0000673
so part of: LOC109575123
location: join(3417362..3417569,3583064..3583110,3583469..3583689,3586103..3586185,3677043..3677206)
location: region:3417362-3677206:1
so has part: feature:3417362-3417569:1:exon
so has part: feature:3583064-3583110:1:exon
so has part: feature:3583469-3583689:1:exon
so has part: feature:3586103-3586185:1:exon
so has part: feature:3677043-3677206:1:exon

XP_019838732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3417362-3417569:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3583064-3583110:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3583469-3583689:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3586103-3586185:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3677043-3677206:1:exon

LOC109575283
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575283
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3866177..3866816)
location: region:3866177-3866816:-1
so has part: feature:3866177-3866816:-1:exon

109575283
type: Gene
SIO_000068: ncbigene

position:3866177:-1
position: 3866177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3866816:-1
position: 3866816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3866177-3866816:-1:exon

LOC109575283
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575283
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575283
subclass of: SO_0000673
so part of: LOC109575283
location: complement(3866177..3866816)
location: region:3866177-3866816:-1
so has part: feature:3866177-3866816:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3866177-3866816:-1:exon

SELENOS
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: SELENOS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3877652..3886830
location: region:3877652-3886830:1
so has part: feature:3877652-3886830:1:exon
subclass of: SO_0000010

109575599
type: Gene
SIO_000068: ncbigene

position:3877652:1
position: 3877652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3886830:1
position: 3886830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3877652-3886830:1:exon

SELENOS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SELENOS
product: selenoprotein S, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 141 samples with support for all annotated introns
transcript id: XM_019983834.1
SIO_010081: SELENOS
subclass of: SO_0000673
so part of: SELENOS
location: join(3877652..3877811,3878447..3878581,3880627..3880733,3884036..3884125,3884227..3884305,3885086..3886082)
location: region:3877652-3886082:1
so has part: feature:3877652-3877811:1:exon
so has part: feature:3878447-3878581:1:exon
so has part: feature:3880627-3880733:1:exon
so has part: feature:3884036-3884125:1:exon
so has part: feature:3884227-3884305:1:exon
so has part: feature:3885086-3886082:1:exon

position:3886082:1
position: 3886082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3877652-3877811:1:exon

position:3877811:1
position: 3877811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3878447-3878581:1:exon

position:3878447:1
position: 3878447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3878581:1
position: 3878581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3880627-3880733:1:exon

position:3880627:1
position: 3880627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3880733:1
position: 3880733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3884036-3884125:1:exon

position:3884036:1
position: 3884036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3884125:1
position: 3884125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3884227-3884305:1:exon

position:3884227:1
position: 3884227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3884305:1
position: 3884305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3885086-3886082:1:exon

position:3885086:1
position: 3885086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SELENOS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SELENOS
product: selenoprotein S, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 75 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 262 samples with support for all annotated introns
transcript id: XM_019983833.1
SIO_010081: SELENOS
subclass of: SO_0000673
so part of: SELENOS
location: join(3877654..3877811,3878447..3878581,3880627..3880733,3884036..3884125,3884227..3884305,3886124..3886830)
location: region:3877654-3886830:1
so has part: feature:3877654-3877811:1:exon
so has part: feature:3878447-3878581:1:exon
so has part: feature:3880627-3880733:1:exon
so has part: feature:3884036-3884125:1:exon
so has part: feature:3884227-3884305:1:exon
so has part: feature:3886124-3886830:1:exon

position:3877654:1
position: 3877654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3877654-3877811:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3878447-3878581:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3880627-3880733:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3884036-3884125:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3884227-3884305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3886124-3886830:1:exon

position:3886124:1
position: 3886124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SELENOS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SELENOS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: selenoprotein S isoform X1
translation: MERDGDQLSARPTLETEGLRFLHVTVGSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGGYNPLSGEGGGTCSWRPGRRGPSSGG
SIO_010081: SELENOS
subclass of: SO_0000673
so part of: SELENOS
location: join(3877736..3877811,3878447..3878581,3880627..3880733,3884036..3884125,3884227..3884305,3886124..3886203)
location: region:3877736-3886203:1
so has part: feature:3877736-3877811:1:exon
so has part: feature:3878447-3878581:1:exon
so has part: feature:3880627-3880733:1:exon
so has part: feature:3884036-3884125:1:exon
so has part: feature:3884227-3884305:1:exon
so has part: feature:3886124-3886203:1:exon

XP_019839392.1
type: Protein
SIO_000068: ncbiprotein

position:3877736:1
position: 3877736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3886203:1
position: 3886203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3877736-3877811:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3878447-3878581:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3880627-3880733:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3884036-3884125:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3884227-3884305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3886124-3886203:1:exon

SELENOS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SELENOS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: selenoprotein S isoform X2
translation: MERDGDQLSARPTLETEGLRFLHVTVGSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRHLDQAAAALEPDIVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNTRKPQEEDSPGPSTSSVIPKRKSDRKPLRGGEGFSLARCHRGRGVANLLDN
SIO_010081: SELENOS
subclass of: SO_0000673
so part of: SELENOS
location: join(3877736..3877811,3878447..3878581,3880627..3880733,3884036..3884125,3884227..3884305,3885086..3885147)
location: region:3877736-3885147:1
so has part: feature:3877736-3877811:1:exon
so has part: feature:3878447-3878581:1:exon
so has part: feature:3880627-3880733:1:exon
so has part: feature:3884036-3884125:1:exon
so has part: feature:3884227-3884305:1:exon
so has part: feature:3885086-3885147:1:exon

XP_019839393.1
type: Protein
SIO_000068: ncbiprotein

position:3885147:1
position: 3885147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3877736-3877811:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3878447-3878581:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3880627-3880733:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3884036-3884125:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3884227-3884305:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3885086-3885147:1:exon

CHSY1
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: CHSY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3917117..4007728
location: region:3917117-4007728:1
so has part: feature:3917117-4007728:1:exon
subclass of: SO_0000010

109575124
type: Gene
SIO_000068: ncbigene

position:3917117:1
position: 3917117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4007728:1
position: 4007728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3917117-4007728:1:exon

CHSY1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: CHSY1
product: chondroitin sulfate synthase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 40 ESTs, 2 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983174.1
SIO_010081: CHSY1
subclass of: SO_0000673
so part of: CHSY1
location: join(3917117..3917398,3918180..3918346,3933516..3934011,4004740..4007728)
location: region:3917117-4007728:1
so has part: feature:3917117-3917398:1:exon
so has part: feature:3918180-3918346:1:exon
so has part: feature:3933516-3934011:1:exon
so has part: feature:4004740-4007728:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3917117-3917398:1:exon

position:3917398:1
position: 3917398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3918180-3918346:1:exon

position:3918180:1
position: 3918180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3918346:1
position: 3918346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3933516-3934011:1:exon

position:3933516:1
position: 3933516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3934011:1
position: 3934011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4004740-4007728:1:exon

position:4004740:1
position: 4004740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CHSY1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: CHSY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chondroitin sulfate synthase 1
translation: MLARTHRAAGTKIQCESGGRKEGGRRGPPGWRAGHGEASVSEDSVCRRNARFVLHECSVRGPRSPFLEIPDKIHAGAASPGSRRPGGTASGQRRANAVPLAGGARGDARGQRLWPHGEAQDGVPRDRNFLFVGVMTAQKYLQTRAVAAFRTWSKTIPGKVEFFSSEGSDTSISIPVVPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLESFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYEMQQLFYENYEQNKKGYIRDLHNSKIHRAITLHPNKNPPYQYRLHSYMLSRKIAELRHRTIQLHREIVLMSKYSNTEVHKEDLQLGIPPSFMRFQPRQREEILEWEFLTGKYLYSAADSQPPRRGMDSAQREALDDIVMQVMEMINANAKTRGRIIDFKEIQYGYRRVNPMYGAEYILDLLLLYKKHKGKKMTVPVRRHAYLQQTFSKIQFVEHEELDAKELANKINQESGSLSFLSNSLKKLVPFQLPGSKNEHKEPKEKKINILIPLSGRFDMFVRFMGNFEKTCLIPNQNVKLVVLLFNSDSNPDKAKQVELMRDYRIKYPKADMQILPVSGEFSRALALEVGSSQFNNESLLFFCDVDLVFTAEFLQRCRANTVLGQQIYFPIIFSQYDPKIVYSGKVPSDNHFAFTQKTGFWRNYGFGITCIYKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFRSQEVGVVHVHHPVFCDPNLDPKQYKMCLGSKASTYGSTHQLAEMWLEKNDPNYSKSSNNNGSVRTA
SIO_010081: CHSY1
subclass of: SO_0000673
so part of: CHSY1
location: join(3917117..3917398,3918180..3918346,3933516..3934011,4004740..4006332)
location: region:3917117-4006332:1
so has part: feature:3917117-3917398:1:exon
so has part: feature:3918180-3918346:1:exon
so has part: feature:3933516-3934011:1:exon
so has part: feature:4004740-4006332:1:exon

XP_019838733.1
type: Protein
SIO_000068: ncbiprotein

position:4006332:1
position: 4006332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3917117-3917398:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3918180-3918346:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3933516-3934011:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4004740-4006332:1:exon

LRRK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LRRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4124413..4258623)
location: region:4124413-4258623:-1
so has part: feature:4124413-4258623:-1:exon
subclass of: SO_0000010

109575531
type: Gene
SIO_000068: ncbigene

position:4124413:-1
position: 4124413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4258623:-1
position: 4258623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4124413-4258623:-1:exon

LRRK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LRRK1
product: leucine rich repeat kinase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 13 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_019983736.1
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(4124413..4125793,4127903..4128004,4128384..4129234,4131909..4132025,4133097..4133214,4137910..4138061,4138813..4139007,4140537..4140814,4141743..4141940,4144237..4144403,4146802..4147051,4148288..4148427,4149427..4149590,4152110..4152281,4155404..4155680,4156077..4156236,4156617..4156737,4157378..4157550,4158055..4158219,4160806..4161020,4161389..4161501,4162585..4162714,4167927..4168003,4169011..4169123,4170257..4170394,4171372..4171535,4171630..4171757,4172865..4173091,4202788..4202936,4203352..4203531,4208839..4209010,4216750..4216913,4252572..4252827))
location: region:4124413-4252827:-1
so has part: feature:4252572-4252827:-1:exon
so has part: feature:4216750-4216913:-1:exon
so has part: feature:4208839-4209010:-1:exon
so has part: feature:4203352-4203531:-1:exon
so has part: feature:4202788-4202936:-1:exon
so has part: feature:4172865-4173091:-1:exon
so has part: feature:4171630-4171757:-1:exon
so has part: feature:4171372-4171535:-1:exon
so has part: feature:4170257-4170394:-1:exon
so has part: feature:4169011-4169123:-1:exon
so has part: feature:4167927-4168003:-1:exon
so has part: feature:4162585-4162714:-1:exon
so has part: feature:4161389-4161501:-1:exon
so has part: feature:4160806-4161020:-1:exon
so has part: feature:4158055-4158219:-1:exon
so has part: feature:4157378-4157550:-1:exon
so has part: feature:4156617-4156737:-1:exon
so has part: feature:4156077-4156236:-1:exon
so has part: feature:4155404-4155680:-1:exon
so has part: feature:4152110-4152281:-1:exon
so has part: feature:4149427-4149590:-1:exon
so has part: feature:4148288-4148427:-1:exon
so has part: feature:4146802-4147051:-1:exon
so has part: feature:4144237-4144403:-1:exon
so has part: feature:4141743-4141940:-1:exon
so has part: feature:4140537-4140814:-1:exon
so has part: feature:4138813-4139007:-1:exon
so has part: feature:4137910-4138061:-1:exon
so has part: feature:4133097-4133214:-1:exon
so has part: feature:4131909-4132025:-1:exon
so has part: feature:4128384-4129234:-1:exon
so has part: feature:4127903-4128004:-1:exon
so has part: feature:4124413-4125793:-1:exon

position:4252827:-1
position: 4252827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4252572-4252827:-1:exon

position:4252572:-1
position: 4252572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4216750-4216913:-1:exon

position:4216750:-1
position: 4216750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4216913:-1
position: 4216913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4208839-4209010:-1:exon

position:4208839:-1
position: 4208839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4209010:-1
position: 4209010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4203352-4203531:-1:exon

position:4203352:-1
position: 4203352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4203531:-1
position: 4203531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4202788-4202936:-1:exon

position:4202788:-1
position: 4202788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4202936:-1
position: 4202936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4172865-4173091:-1:exon

position:4172865:-1
position: 4172865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4173091:-1
position: 4173091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4171630-4171757:-1:exon

position:4171630:-1
position: 4171630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4171757:-1
position: 4171757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4171372-4171535:-1:exon

position:4171372:-1
position: 4171372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4171535:-1
position: 4171535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4170257-4170394:-1:exon

position:4170257:-1
position: 4170257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4170394:-1
position: 4170394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4169011-4169123:-1:exon

position:4169011:-1
position: 4169011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4169123:-1
position: 4169123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4167927-4168003:-1:exon

position:4167927:-1
position: 4167927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4168003:-1
position: 4168003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4162585-4162714:-1:exon

position:4162585:-1
position: 4162585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4162714:-1
position: 4162714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4161389-4161501:-1:exon

position:4161389:-1
position: 4161389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4161501:-1
position: 4161501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4160806-4161020:-1:exon

position:4160806:-1
position: 4160806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4161020:-1
position: 4161020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4158055-4158219:-1:exon

position:4158055:-1
position: 4158055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4158219:-1
position: 4158219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4157378-4157550:-1:exon

position:4157378:-1
position: 4157378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4157550:-1
position: 4157550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4156617-4156737:-1:exon

position:4156617:-1
position: 4156617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4156737:-1
position: 4156737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4156077-4156236:-1:exon

position:4156077:-1
position: 4156077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4156236:-1
position: 4156236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4155404-4155680:-1:exon

position:4155404:-1
position: 4155404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4155680:-1
position: 4155680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:4152110-4152281:-1:exon

position:4152110:-1
position: 4152110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4152281:-1
position: 4152281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:4149427-4149590:-1:exon

position:4149427:-1
position: 4149427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4149590:-1
position: 4149590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:4148288-4148427:-1:exon

position:4148288:-1
position: 4148288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4148427:-1
position: 4148427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:4146802-4147051:-1:exon

position:4146802:-1
position: 4146802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4147051:-1
position: 4147051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:4144237-4144403:-1:exon

position:4144237:-1
position: 4144237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4144403:-1
position: 4144403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:4141743-4141940:-1:exon

position:4141743:-1
position: 4141743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4141940:-1
position: 4141940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:4140537-4140814:-1:exon

position:4140537:-1
position: 4140537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4140814:-1
position: 4140814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:4138813-4139007:-1:exon

position:4138813:-1
position: 4138813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4139007:-1
position: 4139007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:4137910-4138061:-1:exon

position:4137910:-1
position: 4137910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4138061:-1
position: 4138061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:4133097-4133214:-1:exon

position:4133097:-1
position: 4133097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4133214:-1
position: 4133214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:4131909-4132025:-1:exon

position:4131909:-1
position: 4131909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4132025:-1
position: 4132025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:4128384-4129234:-1:exon

position:4128384:-1
position: 4128384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4129234:-1
position: 4129234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:4127903-4128004:-1:exon

position:4127903:-1
position: 4127903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4128004:-1
position: 4128004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:4124413-4125793:-1:exon

position:4125793:-1
position: 4125793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LRRK1
product: leucine rich repeat kinase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 10 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_019983734.1
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(4124853..4125793,4127903..4128004,4128384..4129234,4131909..4132025,4133097..4133214,4137910..4138061,4138813..4139007,4140537..4140814,4141743..4141940,4144237..4144403,4146802..4147051,4148288..4148427,4149427..4149590,4152110..4152281,4155404..4155680,4156077..4156236,4156617..4156737,4157378..4157550,4158055..4158219,4160806..4161020,4161389..4161501,4162585..4162714,4167927..4168003,4169011..4169123,4170257..4170394,4171372..4171535,4171630..4171757,4172865..4173091,4202788..4202936,4203352..4203531,4208839..4209010,4216750..4216913,4252572..4252824,4258117..4258619))
location: region:4124853-4258619:-1
so has part: feature:4258117-4258619:-1:exon
so has part: feature:4252572-4252824:-1:exon
so has part: feature:4216750-4216913:-1:exon
so has part: feature:4208839-4209010:-1:exon
so has part: feature:4203352-4203531:-1:exon
so has part: feature:4202788-4202936:-1:exon
so has part: feature:4172865-4173091:-1:exon
so has part: feature:4171630-4171757:-1:exon
so has part: feature:4171372-4171535:-1:exon
so has part: feature:4170257-4170394:-1:exon
so has part: feature:4169011-4169123:-1:exon
so has part: feature:4167927-4168003:-1:exon
so has part: feature:4162585-4162714:-1:exon
so has part: feature:4161389-4161501:-1:exon
so has part: feature:4160806-4161020:-1:exon
so has part: feature:4158055-4158219:-1:exon
so has part: feature:4157378-4157550:-1:exon
so has part: feature:4156617-4156737:-1:exon
so has part: feature:4156077-4156236:-1:exon
so has part: feature:4155404-4155680:-1:exon
so has part: feature:4152110-4152281:-1:exon
so has part: feature:4149427-4149590:-1:exon
so has part: feature:4148288-4148427:-1:exon
so has part: feature:4146802-4147051:-1:exon
so has part: feature:4144237-4144403:-1:exon
so has part: feature:4141743-4141940:-1:exon
so has part: feature:4140537-4140814:-1:exon
so has part: feature:4138813-4139007:-1:exon
so has part: feature:4137910-4138061:-1:exon
so has part: feature:4133097-4133214:-1:exon
so has part: feature:4131909-4132025:-1:exon
so has part: feature:4128384-4129234:-1:exon
so has part: feature:4127903-4128004:-1:exon
so has part: feature:4124853-4125793:-1:exon

position:4124853:-1
position: 4124853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4258619:-1
position: 4258619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4258117-4258619:-1:exon

position:4258117:-1
position: 4258117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4252572-4252824:-1:exon

position:4252824:-1
position: 4252824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4216750-4216913:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4208839-4209010:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4203352-4203531:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4202788-4202936:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4172865-4173091:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4171630-4171757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4171372-4171535:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4170257-4170394:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4169011-4169123:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4167927-4168003:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4162585-4162714:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4161389-4161501:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4160806-4161020:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4158055-4158219:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4157378-4157550:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4156617-4156737:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4156077-4156236:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4155404-4155680:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4152110-4152281:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4149427-4149590:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4148288-4148427:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4146802-4147051:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4144237-4144403:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4141743-4141940:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4140537-4140814:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:4138813-4139007:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:4137910-4138061:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:4133097-4133214:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:4131909-4132025:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:4128384-4129234:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:4127903-4128004:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:4124853-4125793:-1:exon

LRRK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LRRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat serine/threonine-protein kinase 1 isoform X1
translation: MAGMSRLPPSMYWCVGPAGSAVCPGRAMETQENGAGDMGSKLSMPGSEPMVQSPRTEGIHAAYRRGNISRAQHLLREACDESTSQLEKGQLLSISAAHGDLETVRYLLTERLVELPTEPTDDNPAVVAAQFGHTDVVQELLESLPGPCSPQRLLNWMLALACQQGHLAVVKLLVLTYGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLIRHGAFFCSYILLDSPDPSKHLLRKYFVEASALPSSCPGKMALRVKWSHLKLPWVDLDWLIDISCQITELDLSANCLASLPSVVPWGLINLRKLNLSDNHLGELPSVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTASKNYLEKLFEEESATNWIGLRKLQELDVSDNKLTELPALFLHSFKSLSCLNVSRNNLKAFPDAWACPLKCCKASKNALESLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLKLQGNQLVALPPQEKWTCRQLKTLDLSRNHFGKNEDVLKTKRISFFTTRGRQRSGTEAACVLEFPAFLSESLEVLCLNDNHLDAVPPSVCLLKSLSELYLGNNPSLRELPPELGQLGNLWQLDIEDLNIXNVPAEIRKEGPKAMLSYLRAQLRKAEKCKQMKMIIVGPPRQGKSTLLEILQTGRAPQVVHSEATIRTTKWELQRPAGSRAKVESVEFTVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEAVASLQFWLLNIEAKAPNAVVLVVGTHLDLIETKFRVERIATLRAYVLALCRSPSGSRATGFPDITCKHLHELSCKSLEGQEGLRQLIFQVTCNMKDVGSTIGCQRLAGRLIPRSYLSLQEAVLAEKQHRSLSDDVQYLTDRQLEQLVDQMPCSDIQDYEDLQSAISFLIETGSLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRLLLVGTGFTKQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDTHGMRHPTANTIQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLFENRKNTKSRHRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGIKIMCQSEIRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCEASWAQHSNPSERSEDVQYFDMEDCVLTAIERDFISCPRHPDLLVPLQELVPELFMTDFPARLFLDNSKLEHSEDESAVLGQGGSGTVIYRARYQGQPVAVKRFQIKKFKNYANAPADTMLRHLRATDAMRNFSEFRQEASMLHALQHPCIVSLIGISIHPLCFALELAPLGSLNTVLSENARDSSFMPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDIKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGQHQLQISKKLSKGIRPVLGQPEEVQFHRLQALMMECWDTKPEKRPLALAVVSQMKDPTFATFMYQLPCGKQTSFFSSQGQEYMVVFWEGKEESRNYTVVNTEKGLLEVQHMSCAGMKLSCQLKIQNSLWTATEDQKIYIYSLKGMCPLNTPQRALDTPAIVTCFLAVPIIKKNSHLVLAGLADGLVAVFPAAWGAPDYGCSYLCSHTANRAKFSIPDEDARQNPYPVTAMEVVNCGSEVWYSNGPGLLVIDCAALEIRRRLEPYAAPSVVTSVVCGSECRGEEVVWCLDDRANCLVLYHSATYQLCARYFCGDPSPLGDVFPVCPMGPPPLDSPTASXREPARGSIADVSFMFSEELGTQILTHQDSLTDYCSLSSCSAASPHPAPMALSSLPCSPASSASLPFSSDCEDTSQLPKPAVGSDRSVHDLSPVDGEAFSQHLQAVKILAVKDVIWVPRRGGDIIVISLEKEAGTQRGRVIAVLKARELTPHGVLTEAAVVAKDTVVCGFENENLEWCLAVWRGWGTQEFDIFYQS…
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(4125616..4125793,4127903..4128004,4128384..4129234,4131909..4132025,4133097..4133214,4137910..4138061,4138813..4139007,4140537..4140814,4141743..4141940,4144237..4144403,4146802..4147051,4148288..4148427,4149427..4149590,4152110..4152281,4155404..4155680,4156077..4156236,4156617..4156737,4157378..4157550,4158055..4158219,4160806..4161020,4161389..4161501,4162585..4162714,4167927..4168003,4169011..4169123,4170257..4170394,4171372..4171535,4171630..4171757,4172865..4173091,4202788..4202936,4203352..4203531,4208839..4209010,4216750..4216913,4252572..4252671))
location: region:4125616-4252671:-1
so has part: feature:4252572-4252671:-1:exon
so has part: feature:4216750-4216913:-1:exon
so has part: feature:4208839-4209010:-1:exon
so has part: feature:4203352-4203531:-1:exon
so has part: feature:4202788-4202936:-1:exon
so has part: feature:4172865-4173091:-1:exon
so has part: feature:4171630-4171757:-1:exon
so has part: feature:4171372-4171535:-1:exon
so has part: feature:4170257-4170394:-1:exon
so has part: feature:4169011-4169123:-1:exon
so has part: feature:4167927-4168003:-1:exon
so has part: feature:4162585-4162714:-1:exon
so has part: feature:4161389-4161501:-1:exon
so has part: feature:4160806-4161020:-1:exon
so has part: feature:4158055-4158219:-1:exon
so has part: feature:4157378-4157550:-1:exon
so has part: feature:4156617-4156737:-1:exon
so has part: feature:4156077-4156236:-1:exon
so has part: feature:4155404-4155680:-1:exon
so has part: feature:4152110-4152281:-1:exon
so has part: feature:4149427-4149590:-1:exon
so has part: feature:4148288-4148427:-1:exon
so has part: feature:4146802-4147051:-1:exon
so has part: feature:4144237-4144403:-1:exon
so has part: feature:4141743-4141940:-1:exon
so has part: feature:4140537-4140814:-1:exon
so has part: feature:4138813-4139007:-1:exon
so has part: feature:4137910-4138061:-1:exon
so has part: feature:4133097-4133214:-1:exon
so has part: feature:4131909-4132025:-1:exon
so has part: feature:4128384-4129234:-1:exon
so has part: feature:4127903-4128004:-1:exon
so has part: feature:4125616-4125793:-1:exon

XP_019839293.1
type: Protein
SIO_000068: ncbiprotein

position:4125616:-1
position: 4125616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4252671:-1
position: 4252671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4252572-4252671:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4216750-4216913:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4208839-4209010:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4203352-4203531:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4202788-4202936:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4172865-4173091:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4171630-4171757:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4171372-4171535:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4170257-4170394:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4169011-4169123:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4167927-4168003:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4162585-4162714:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4161389-4161501:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4160806-4161020:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4158055-4158219:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4157378-4157550:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4156617-4156737:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4156077-4156236:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4155404-4155680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4152110-4152281:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4149427-4149590:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4148288-4148427:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4146802-4147051:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4144237-4144403:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4141743-4141940:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4140537-4140814:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4138813-4139007:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:4137910-4138061:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:4133097-4133214:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:4131909-4132025:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:4128384-4129234:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:4127903-4128004:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:4125616-4125793:-1:exon

LRRK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LRRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat serine/threonine-protein kinase 1 isoform X1
translation: MAGMSRLPPSMYWCVGPAGSAVCPGRAMETQENGAGDMGSKLSMPGSEPMVQSPRTEGIHAAYRRGNISRAQHLLREACDESTSQLEKGQLLSISAAHGDLETVRYLLTERLVELPTEPTDDNPAVVAAQFGHTDVVQELLESLPGPCSPQRLLNWMLALACQQGHLAVVKLLVLTYGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLIRHGAFFCSYILLDSPDPSKHLLRKYFVEASALPSSCPGKMALRVKWSHLKLPWVDLDWLIDISCQITELDLSANCLASLPSVVPWGLINLRKLNLSDNHLGELPSVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTASKNYLEKLFEEESATNWIGLRKLQELDVSDNKLTELPALFLHSFKSLSCLNVSRNNLKAFPDAWACPLKCCKASKNALESLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLKLQGNQLVALPPQEKWTCRQLKTLDLSRNHFGKNEDVLKTKRISFFTTRGRQRSGTEAACVLEFPAFLSESLEVLCLNDNHLDAVPPSVCLLKSLSELYLGNNPSLRELPPELGQLGNLWQLDIEDLNIXNVPAEIRKEGPKAMLSYLRAQLRKAEKCKQMKMIIVGPPRQGKSTLLEILQTGRAPQVVHSEATIRTTKWELQRPAGSRAKVESVEFTVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEAVASLQFWLLNIEAKAPNAVVLVVGTHLDLIETKFRVERIATLRAYVLALCRSPSGSRATGFPDITCKHLHELSCKSLEGQEGLRQLIFQVTCNMKDVGSTIGCQRLAGRLIPRSYLSLQEAVLAEKQHRSLSDDVQYLTDRQLEQLVDQMPCSDIQDYEDLQSAISFLIETGSLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRLLLVGTGFTKQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDTHGMRHPTANTIQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLFENRKNTKSRHRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGIKIMCQSEIRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCEASWAQHSNPSERSEDVQYFDMEDCVLTAIERDFISCPRHPDLLVPLQELVPELFMTDFPARLFLDNSKLEHSEDESAVLGQGGSGTVIYRARYQGQPVAVKRFQIKKFKNYANAPADTMLRHLRATDAMRNFSEFRQEASMLHALQHPCIVSLIGISIHPLCFALELAPLGSLNTVLSENARDSSFMPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDIKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGQHQLQISKKLSKGIRPVLGQPEEVQFHRLQALMMECWDTKPEKRPLALAVVSQMKDPTFATFMYQLPCGKQTSFFSSQGQEYMVVFWEGKEESRNYTVVNTEKGLLEVQHMSCAGMKLSCQLKIQNSLWTATEDQKIYIYSLKGMCPLNTPQRALDTPAIVTCFLAVPIIKKNSHLVLAGLADGLVAVFPAAWGAPDYGCSYLCSHTANRAKFSIPDEDARQNPYPVTAMEVVNCGSEVWYSNGPGLLVIDCAALEIRRRLEPYAAPSVVTSVVCGSECRGEEVVWCLDDRANCLVLYHSATYQLCARYFCGDPSPLGDVFPVCPMGPPPLDSPTASXREPARGSIADVSFMFSEELGTQILTHQDSLTDYCSLSSCSAASPHPAPMALSSLPCSPASSASLPFSSDCEDTSQLPKPAVGSDRSVHDLSPVDGEAFSQHLQAVKILAVKDVIWVPRRGGDIIVISLEKEAGTQRGRVIAVLKARELTPHGVLTEAAVVAKDTVVCGFENENLEWCLAVWRGWGTQEFDIFYQS…
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(4125616..4125793,4127903..4128004,4128384..4129234,4131909..4132025,4133097..4133214,4137910..4138061,4138813..4139007,4140537..4140814,4141743..4141940,4144237..4144403,4146802..4147051,4148288..4148427,4149427..4149590,4152110..4152281,4155404..4155680,4156077..4156236,4156617..4156737,4157378..4157550,4158055..4158219,4160806..4161020,4161389..4161501,4162585..4162714,4167927..4168003,4169011..4169123,4170257..4170394,4171372..4171535,4171630..4171757,4172865..4173091,4202788..4202936,4203352..4203531,4208839..4209010,4216750..4216913,4252572..4252671))
location: region:4125616-4252671:-1
so has part: feature:4252572-4252671:-1:exon
so has part: feature:4216750-4216913:-1:exon
so has part: feature:4208839-4209010:-1:exon
so has part: feature:4203352-4203531:-1:exon
so has part: feature:4202788-4202936:-1:exon
so has part: feature:4172865-4173091:-1:exon
so has part: feature:4171630-4171757:-1:exon
so has part: feature:4171372-4171535:-1:exon
so has part: feature:4170257-4170394:-1:exon
so has part: feature:4169011-4169123:-1:exon
so has part: feature:4167927-4168003:-1:exon
so has part: feature:4162585-4162714:-1:exon
so has part: feature:4161389-4161501:-1:exon
so has part: feature:4160806-4161020:-1:exon
so has part: feature:4158055-4158219:-1:exon
so has part: feature:4157378-4157550:-1:exon
so has part: feature:4156617-4156737:-1:exon
so has part: feature:4156077-4156236:-1:exon
so has part: feature:4155404-4155680:-1:exon
so has part: feature:4152110-4152281:-1:exon
so has part: feature:4149427-4149590:-1:exon
so has part: feature:4148288-4148427:-1:exon
so has part: feature:4146802-4147051:-1:exon
so has part: feature:4144237-4144403:-1:exon
so has part: feature:4141743-4141940:-1:exon
so has part: feature:4140537-4140814:-1:exon
so has part: feature:4138813-4139007:-1:exon
so has part: feature:4137910-4138061:-1:exon
so has part: feature:4133097-4133214:-1:exon
so has part: feature:4131909-4132025:-1:exon
so has part: feature:4128384-4129234:-1:exon
so has part: feature:4127903-4128004:-1:exon
so has part: feature:4125616-4125793:-1:exon

XP_019839295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4252572-4252671:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4216750-4216913:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4208839-4209010:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4203352-4203531:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4202788-4202936:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4172865-4173091:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4171630-4171757:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4171372-4171535:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4170257-4170394:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4169011-4169123:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4167927-4168003:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4162585-4162714:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4161389-4161501:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4160806-4161020:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4158055-4158219:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4157378-4157550:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4156617-4156737:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4156077-4156236:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4155404-4155680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4152110-4152281:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4149427-4149590:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4148288-4148427:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4146802-4147051:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4144237-4144403:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4141743-4141940:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4140537-4140814:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4138813-4139007:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:4137910-4138061:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:4133097-4133214:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:4131909-4132025:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:4128384-4129234:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:4127903-4128004:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:4125616-4125793:-1:exon

LRRK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LRRK1
product: leucine rich repeat kinase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019983737.1
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(4132050..4132404,4133097..4133214,4137910..4138061,4138813..4139007,4140537..4140814,4141743..4141940,4144237..4144403,4146802..4147051,4148288..4148427,4149427..4149590,4152110..4152281,4155404..4155680,4156077..4156236,4156617..4156737,4157378..4157550,4158055..4158219,4160806..4161020,4161389..4161501,4162585..4162714,4167927..4168003,4169011..4169123,4170257..4170394,4171372..4171535,4171630..4171757,4172865..4173091,4202788..4202936,4203352..4203531,4208839..4209010,4216750..4216913,4252572..4252824,4258117..4258623))
location: region:4132050-4258623:-1
so has part: feature:4258117-4258623:-1:exon
so has part: feature:4252572-4252824:-1:exon
so has part: feature:4216750-4216913:-1:exon
so has part: feature:4208839-4209010:-1:exon
so has part: feature:4203352-4203531:-1:exon
so has part: feature:4202788-4202936:-1:exon
so has part: feature:4172865-4173091:-1:exon
so has part: feature:4171630-4171757:-1:exon
so has part: feature:4171372-4171535:-1:exon
so has part: feature:4170257-4170394:-1:exon
so has part: feature:4169011-4169123:-1:exon
so has part: feature:4167927-4168003:-1:exon
so has part: feature:4162585-4162714:-1:exon
so has part: feature:4161389-4161501:-1:exon
so has part: feature:4160806-4161020:-1:exon
so has part: feature:4158055-4158219:-1:exon
so has part: feature:4157378-4157550:-1:exon
so has part: feature:4156617-4156737:-1:exon
so has part: feature:4156077-4156236:-1:exon
so has part: feature:4155404-4155680:-1:exon
so has part: feature:4152110-4152281:-1:exon
so has part: feature:4149427-4149590:-1:exon
so has part: feature:4148288-4148427:-1:exon
so has part: feature:4146802-4147051:-1:exon
so has part: feature:4144237-4144403:-1:exon
so has part: feature:4141743-4141940:-1:exon
so has part: feature:4140537-4140814:-1:exon
so has part: feature:4138813-4139007:-1:exon
so has part: feature:4137910-4138061:-1:exon
so has part: feature:4133097-4133214:-1:exon
so has part: feature:4132050-4132404:-1:exon

position:4132050:-1
position: 4132050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4258117-4258623:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4252572-4252824:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4216750-4216913:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4208839-4209010:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4203352-4203531:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4202788-4202936:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4172865-4173091:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4171630-4171757:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4171372-4171535:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4170257-4170394:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4169011-4169123:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4167927-4168003:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4162585-4162714:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4161389-4161501:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4160806-4161020:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4158055-4158219:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4157378-4157550:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4156617-4156737:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4156077-4156236:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4155404-4155680:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4152110-4152281:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4149427-4149590:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4148288-4148427:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4146802-4147051:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4144237-4144403:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4141743-4141940:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4140537-4140814:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:4138813-4139007:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:4137910-4138061:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:4133097-4133214:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:4132050-4132404:-1:exon

position:4132404:-1
position: 4132404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LRRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat serine/threonine-protein kinase 1 isoform X2
translation: MAGMSRLPPSMYWCVGPAGSAVCPGRAMETQENGAGDMGSKLSMPGSEPMVQSPRTEGIHAAYRRGNISRAQHLLREACDESTSQLEKGQLLSISAAHGDLETVRYLLTERLVELPTEPTDDNPAVVAAQFGHTDVVQELLESLPGPCSPQRLLNWMLALACQQGHLAVVKLLVLTYGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLIRHGAFFCSYILLDSPDPSKHLLRKYFVEASALPSSCPGKMALRVKWSHLKLPWVDLDWLIDISCQITELDLSANCLASLPSVVPWGLINLRKLNLSDNHLGELPSVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTASKNYLEKLFEEESATNWIGLRKLQELDVSDNKLTELPALFLHSFKSLSCLNVSRNNLKAFPDAWACPLKCCKASKNALESLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLKLQGNQLVALPPQEKWTCRQLKTLDLSRNHFGKNEDVLKTKRISFFTTRGRQRSGTEAACVLEFPAFLSESLEVLCLNDNHLDAVPPSVCLLKSLSELYLGNNPSLRELPPELGQLGNLWQLDIEDLNIXNVPAEIRKEGPKAMLSYLRAQLRKAEKCKQMKMIIVGPPRQGKSTLLEILQTGRAPQVVHSEATIRTTKWELQRPAGSRAKVESVEFTVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEAVASLQFWLLNIEAKAPNAVVLVVGTHLDLIETKFRVERIATLRAYVLALCRSPSGSRATGFPDITCKHLHELSCKSLEGQEGLRQLIFQVTCNMKDVGSTIGCQRLAGRLIPRSYLSLQEAVLAEKQHRSLSDDVQYLTDRQLEQLVDQMPCSDIQDYEDLQSAISFLIETGSLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRLLLVGTGFTKQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDTHGMRHPTANTIQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLFENRKNTKSRHRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGIKIMCQSEIRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCEASWAQHSNPSERSEDVQYFDMEDCVLTAIERDFISCPRHPDLLVPLQELVPELFMTDFPARLFLDNSKLEHSEDESAVLGQGGSGTVIYRARYQGQPVAVKRFQIKKFKNYANAPADTMLRHLRATDAMRNFSEFRQEASMLHALQHPCIVSLIGISIHPLCFALELAPLGSLNTVLSENARDSSFMPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDIKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGQHQLQISKKLSKGIRPVLGQPEEVQFHRLQALMMECWDTKPEKRPLALAVVSQMKDPTFATFMYQLPCGKQTSFFSSQGQEYMVVFWEGKEESRNYTVVNTEKGLLEVQHMSCAGMKLSCQLKIQNSLWTATETREERASAHVRRPGRRKAEKQHSSVVPELLGMQTHTXTQRKLEVWAANFKGGFP
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(4132240..4132404,4133097..4133214,4137910..4138061,4138813..4139007,4140537..4140814,4141743..4141940,4144237..4144403,4146802..4147051,4148288..4148427,4149427..4149590,4152110..4152281,4155404..4155680,4156077..4156236,4156617..4156737,4157378..4157550,4158055..4158219,4160806..4161020,4161389..4161501,4162585..4162714,4167927..4168003,4169011..4169123,4170257..4170394,4171372..4171535,4171630..4171757,4172865..4173091,4202788..4202936,4203352..4203531,4208839..4209010,4216750..4216913,4252572..4252671))
location: region:4132240-4252671:-1
so has part: feature:4252572-4252671:-1:exon
so has part: feature:4216750-4216913:-1:exon
so has part: feature:4208839-4209010:-1:exon
so has part: feature:4203352-4203531:-1:exon
so has part: feature:4202788-4202936:-1:exon
so has part: feature:4172865-4173091:-1:exon
so has part: feature:4171630-4171757:-1:exon
so has part: feature:4171372-4171535:-1:exon
so has part: feature:4170257-4170394:-1:exon
so has part: feature:4169011-4169123:-1:exon
so has part: feature:4167927-4168003:-1:exon
so has part: feature:4162585-4162714:-1:exon
so has part: feature:4161389-4161501:-1:exon
so has part: feature:4160806-4161020:-1:exon
so has part: feature:4158055-4158219:-1:exon
so has part: feature:4157378-4157550:-1:exon
so has part: feature:4156617-4156737:-1:exon
so has part: feature:4156077-4156236:-1:exon
so has part: feature:4155404-4155680:-1:exon
so has part: feature:4152110-4152281:-1:exon
so has part: feature:4149427-4149590:-1:exon
so has part: feature:4148288-4148427:-1:exon
so has part: feature:4146802-4147051:-1:exon
so has part: feature:4144237-4144403:-1:exon
so has part: feature:4141743-4141940:-1:exon
so has part: feature:4140537-4140814:-1:exon
so has part: feature:4138813-4139007:-1:exon
so has part: feature:4137910-4138061:-1:exon
so has part: feature:4133097-4133214:-1:exon
so has part: feature:4132240-4132404:-1:exon

XP_019839296.1
type: Protein
SIO_000068: ncbiprotein

position:4132240:-1
position: 4132240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4252572-4252671:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4216750-4216913:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4208839-4209010:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4203352-4203531:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4202788-4202936:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4172865-4173091:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4171630-4171757:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4171372-4171535:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4170257-4170394:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4169011-4169123:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4167927-4168003:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4162585-4162714:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4161389-4161501:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4160806-4161020:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4158055-4158219:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4157378-4157550:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4156617-4156737:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4156077-4156236:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4155404-4155680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4152110-4152281:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4149427-4149590:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4148288-4148427:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4146802-4147051:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4144237-4144403:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4141743-4141940:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4140537-4140814:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:4138813-4139007:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:4137910-4138061:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:4133097-4133214:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:4132240-4132404:-1:exon

LOC109575101
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575101
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4187206..4198142
location: region:4187206-4198142:1
so has part: feature:4187206-4198142:1:exon

109575101
type: Gene
SIO_000068: ncbigene

position:4187206:1
position: 4187206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4198142:1
position: 4198142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4187206-4198142:1:exon

LOC109575101
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575101
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575101
subclass of: SO_0000673
so part of: LOC109575101
location: 4187206..4187493
location: region:4187206-4187493:1
so has part: feature:4187206-4187493:1:exon

position:4187493:1
position: 4187493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4187206-4187493:1:exon

LOC109575101
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575101
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575101
subclass of: SO_0000673
so part of: LOC109575101
location: 4196347..4198142
location: region:4196347-4198142:1
so has part: feature:4196347-4198142:1:exon

position:4196347:1
position: 4196347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4196347-4198142:1:exon

ALDH1A3
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: ALDH1A3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4261106..4297954)
location: region:4261106-4297954:-1
so has part: feature:4261106-4297954:-1:exon
subclass of: SO_0000010

109575619
type: Gene
SIO_000068: ncbigene

position:4261106:-1
position: 4261106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4297954:-1
position: 4297954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4261106-4297954:-1:exon

ALDH1A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ALDH1A3
product: aldehyde dehydrogenase 1 family member A3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 103 samples with support for all annotated introns
transcript id: XM_019983866.1
SIO_010081: ALDH1A3
subclass of: SO_0000673
so part of: ALDH1A3
location: complement(join(4261106..4262982,4270189..4270263,4271078..4271235,4272568..4272732,4281830..4282014,4284277..4284379,4286246..4286359,4287884..4288012,4290318..4290379,4290686..4290815,4295400..4295540,4297831..4297954))
location: region:4261106-4297954:-1
so has part: feature:4297831-4297954:-1:exon
so has part: feature:4295400-4295540:-1:exon
so has part: feature:4290686-4290815:-1:exon
so has part: feature:4290318-4290379:-1:exon
so has part: feature:4287884-4288012:-1:exon
so has part: feature:4286246-4286359:-1:exon
so has part: feature:4284277-4284379:-1:exon
so has part: feature:4281830-4282014:-1:exon
so has part: feature:4272568-4272732:-1:exon
so has part: feature:4271078-4271235:-1:exon
so has part: feature:4270189-4270263:-1:exon
so has part: feature:4261106-4262982:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4297831-4297954:-1:exon

position:4297831:-1
position: 4297831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4295400-4295540:-1:exon

position:4295400:-1
position: 4295400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4295540:-1
position: 4295540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4290686-4290815:-1:exon

position:4290686:-1
position: 4290686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4290815:-1
position: 4290815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4290318-4290379:-1:exon

position:4290318:-1
position: 4290318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4290379:-1
position: 4290379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4287884-4288012:-1:exon

position:4287884:-1
position: 4287884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4288012:-1
position: 4288012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4286246-4286359:-1:exon

position:4286246:-1
position: 4286246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4286359:-1
position: 4286359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4284277-4284379:-1:exon

position:4284277:-1
position: 4284277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4284379:-1
position: 4284379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4281830-4282014:-1:exon

position:4281830:-1
position: 4281830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4282014:-1
position: 4282014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4272568-4272732:-1:exon

position:4272568:-1
position: 4272568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4272732:-1
position: 4272732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4271078-4271235:-1:exon

position:4271078:-1
position: 4271078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4271235:-1
position: 4271235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4270189-4270263:-1:exon

position:4270189:-1
position: 4270189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4270263:-1
position: 4270263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4261106-4262982:-1:exon

position:4262982:-1
position: 4262982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ALDH1A3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ALDH1A3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aldehyde dehydrogenase family 1 member A3
translation: MDTGKPFLHAFFIDLEGCIKTLRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGKLVKEAASHSNLKRVTLELGGKNPCIVCADADLSLAVECAHQGVFFNQGQCCTAASRVFVEEQVYDEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGAKLECGGSAMEDRGLFIKPTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTAAVFTKNLDKALKLASALESGTVWINCYNAIYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLDDKDS
SIO_010081: ALDH1A3
subclass of: SO_0000673
so part of: ALDH1A3
location: complement(join(4262910..4262982,4270189..4270263,4271078..4271235,4272568..4272732,4281830..4282014,4284277..4284379,4286246..4286359,4287884..4288012,4290318..4290379,4290686..4290803))
location: region:4262910-4290803:-1
so has part: feature:4290686-4290803:-1:exon
so has part: feature:4290318-4290379:-1:exon
so has part: feature:4287884-4288012:-1:exon
so has part: feature:4286246-4286359:-1:exon
so has part: feature:4284277-4284379:-1:exon
so has part: feature:4281830-4282014:-1:exon
so has part: feature:4272568-4272732:-1:exon
so has part: feature:4271078-4271235:-1:exon
so has part: feature:4270189-4270263:-1:exon
so has part: feature:4262910-4262982:-1:exon

XP_019839425.1
type: Protein
SIO_000068: ncbiprotein

position:4262910:-1
position: 4262910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4290803:-1
position: 4290803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4290686-4290803:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4290318-4290379:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4287884-4288012:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4286246-4286359:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4284277-4284379:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4281830-4282014:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4272568-4272732:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4271078-4271235:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4270189-4270263:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4262910-4262982:-1:exon

ASB7
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: ASB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4676365..4733876)
location: region:4676365-4733876:-1
so has part: feature:4676365-4733876:-1:exon
subclass of: SO_0000010

109575417
type: Gene
SIO_000068: ncbigene

position:4676365:-1
position: 4676365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4733876:-1
position: 4733876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4676365-4733876:-1:exon

ASB7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ASB7
product: ankyrin repeat and SOCS box containing 7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 18 ESTs, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 157 samples with support for all annotated introns
transcript id: XM_019983520.1
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(4676365..4681306,4695368..4695973,4723156..4723424,4725343..4725466,4733057..4733148,4733302..4733876))
location: region:4676365-4733876:-1
so has part: feature:4733302-4733876:-1:exon
so has part: feature:4733057-4733148:-1:exon
so has part: feature:4725343-4725466:-1:exon
so has part: feature:4723156-4723424:-1:exon
so has part: feature:4695368-4695973:-1:exon
so has part: feature:4676365-4681306:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4733302-4733876:-1:exon

position:4733302:-1
position: 4733302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4733057-4733148:-1:exon

position:4733057:-1
position: 4733057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4733148:-1
position: 4733148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4725343-4725466:-1:exon

position:4725343:-1
position: 4725343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4725466:-1
position: 4725466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4723156-4723424:-1:exon

position:4723156:-1
position: 4723156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4723424:-1
position: 4723424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4695368-4695973:-1:exon

position:4695368:-1
position: 4695368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4695973:-1
position: 4695973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4676365-4681306:-1:exon

position:4681306:-1
position: 4681306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ASB7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ASB7
product: ankyrin repeat and SOCS box containing 7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 14 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_019983521.1
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(4676365..4681306,4695368..4695973,4723156..4723424,4725343..4725466,4733057..4733148,4733355..4733415))
location: region:4676365-4733415:-1
so has part: feature:4733355-4733415:-1:exon
so has part: feature:4733057-4733148:-1:exon
so has part: feature:4725343-4725466:-1:exon
so has part: feature:4723156-4723424:-1:exon
so has part: feature:4695368-4695973:-1:exon
so has part: feature:4676365-4681306:-1:exon

position:4733415:-1
position: 4733415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4733355-4733415:-1:exon

position:4733355:-1
position: 4733355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4733057-4733148:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4725343-4725466:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4723156-4723424:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4695368-4695973:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4676365-4681306:-1:exon

ASB7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ASB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 7
translation: MLHHHCRRNPELQEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGFLLRYAVIKSNHSYCRMFLQRGADTNLGRLEDGQTPLHLSALRDDVLCARMLYNYGADTNTRNYEGQTPLAVSISISGSSRPCLDFLQEVTRQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVMKDYLKHKFDDI
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(4681167..4681306,4695368..4695973,4723156..4723366))
location: region:4681167-4723366:-1
so has part: feature:4723156-4723366:-1:exon
so has part: feature:4695368-4695973:-1:exon
so has part: feature:4681167-4681306:-1:exon

XP_019839079.1
type: Protein
SIO_000068: ncbiprotein

position:4681167:-1
position: 4681167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4723366:-1
position: 4723366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4723156-4723366:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4695368-4695973:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4681167-4681306:-1:exon

ASB7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ASB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 7
translation: MLHHHCRRNPELQEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGFLLRYAVIKSNHSYCRMFLQRGADTNLGRLEDGQTPLHLSALRDDVLCARMLYNYGADTNTRNYEGQTPLAVSISISGSSRPCLDFLQEVTRQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVMKDYLKHKFDDI
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(4681167..4681306,4695368..4695973,4723156..4723366))
location: region:4681167-4723366:-1
so has part: feature:4723156-4723366:-1:exon
so has part: feature:4695368-4695973:-1:exon
so has part: feature:4681167-4681306:-1:exon

XP_019839080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4723156-4723366:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4695368-4695973:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4681167-4681306:-1:exon

LINS1
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4734117..4767830
location: region:4734117-4767830:1
so has part: feature:4734117-4767830:1:exon
subclass of: SO_0000010

109575415
type: Gene
SIO_000068: ncbigene

position:4734117:1
position: 4734117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4767830:1
position: 4767830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4734117-4767830:1:exon

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LINS1
product: lines homolog 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_019983519.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4734117..4734595,4760020..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4764822..4765886)
location: region:4734117-4765886:1
so has part: feature:4734117-4734595:1:exon
so has part: feature:4760020-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4764822-4765886:1:exon

position:4765886:1
position: 4765886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4734117-4734595:1:exon

position:4734595:1
position: 4734595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4760020-4760519:1:exon

position:4760020:1
position: 4760020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4760519:1
position: 4760519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4760637-4760726:1:exon

position:4760637:1
position: 4760637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4760726:1
position: 4760726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4761563-4761704:1:exon

position:4761563:1
position: 4761563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4761704:1
position: 4761704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4762374-4762964:1:exon

position:4762374:1
position: 4762374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4762964:1
position: 4762964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4763943-4764114:1:exon

position:4763943:1
position: 4763943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4764114:1
position: 4764114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4764822-4765886:1:exon

position:4764822:1
position: 4764822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LINS1
product: lines homolog 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_019983518.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4734118..4734595,4760020..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4766196..4767830)
location: region:4734118-4767830:1
so has part: feature:4734118-4734595:1:exon
so has part: feature:4760020-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4766196-4767830:1:exon

position:4734118:1
position: 4734118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4734118-4734595:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760020-4760519:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4766196-4767830:1:exon

position:4766196:1
position: 4766196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LINS1
product: lines homolog 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
transcript id: XM_019983514.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4734119..4734595,4760020..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4767830)
location: region:4734119-4767830:1
so has part: feature:4734119-4734595:1:exon
so has part: feature:4760020-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4767830:1:exon

position:4734119:1
position: 4734119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4734119-4734595:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760020-4760519:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4765893-4767830:1:exon

position:4765893:1
position: 4765893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LINS1
product: lines homolog 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
transcript id: XM_019983515.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4734119..4734574,4760020..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4767830)
location: region:4734119-4767830:1
so has part: feature:4734119-4734574:1:exon
so has part: feature:4760020-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4767830:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4734119-4734574:1:exon

position:4734574:1
position: 4734574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4760020-4760519:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4765893-4767830:1:exon

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LINS1
product: lines homolog 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 114 samples with support for all annotated introns
transcript id: XM_019983516.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4734119..4734220,4760020..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4767830)
location: region:4734119-4767830:1
so has part: feature:4734119-4734220:1:exon
so has part: feature:4760020-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4767830:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4734119-4734220:1:exon

position:4734220:1
position: 4734220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4760020-4760519:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4765893-4767830:1:exon

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LINS1
product: lines homolog 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_019983517.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4758217..4758240,4760020..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4767830)
location: region:4758217-4767830:1
so has part: feature:4758217-4758240:1:exon
so has part: feature:4760020-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4767830:1:exon

position:4758217:1
position: 4758217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4758217-4758240:1:exon

position:4758240:1
position: 4758240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4760020-4760519:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4765893-4767830:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X1
translation: METFFEALEQLYKKVLLGATLENDSHDYIFYLYPAFSDQDCSTTTSSDCSNAPDVQDKQEPSSVSLPTFSVAPMCLQRHSQMSSTREIMLLQLTVIKVMITRILSVETEFHAKEKYRDIIKILLKSSDIESQLTCMFQNSEKLLSHMAAKCLALILYFQLKEKITLSNSWISFCQKNISEYSESNKVVYCLWILTFVIKEIFKDTSSQKTEILKQFLTPFDTLFEAFYKSLLSQHFENHQDASKLINSLICFLELLELLIASRIYLKLHYTCQRILFLKPSCVFDVITWPIQAFVKRKLIIFIKKCLLCKVGEDLCRGSVPTFMPPDNPLDVDLLALASAVLQAVDLGLLRTLSVRGKCSCFGGGEVLAGYEHDPGPDHVILRALSLLIIRSLEIKFQNCSSANEMKVDYQRFMSELLTFLKPHLQPSLQSHNLCEWLSRVFIEQDDDMLEAAKALLGIYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDPTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFLTICNYFDVTESKDNIHICCISSLVQGRNSNSAEASPLAVVGSHTDAHSWVSWASAASSEPLNHGVTLEKAHTKLQANCLSTPGASQSLVDYDSSDDSEEGSTSLCLVNSRLTSSHQEAMKKTQDTFGASGDKKELSPESQSRPLVTEESNTLFSVYCDIAPNNTASEVGISYRTVKCFEELQGAIYRLQKKNLFPYNPTALLKLLKHIETIYNKSMTPS
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4760121..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4766775)
location: region:4760121-4766775:1
so has part: feature:4760121-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4766775:1:exon

XP_019839073.1
type: Protein
SIO_000068: ncbiprotein

position:4760121:1
position: 4760121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4766775:1
position: 4766775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4760121-4760519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4765893-4766775:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X1
translation: METFFEALEQLYKKVLLGATLENDSHDYIFYLYPAFSDQDCSTTTSSDCSNAPDVQDKQEPSSVSLPTFSVAPMCLQRHSQMSSTREIMLLQLTVIKVMITRILSVETEFHAKEKYRDIIKILLKSSDIESQLTCMFQNSEKLLSHMAAKCLALILYFQLKEKITLSNSWISFCQKNISEYSESNKVVYCLWILTFVIKEIFKDTSSQKTEILKQFLTPFDTLFEAFYKSLLSQHFENHQDASKLINSLICFLELLELLIASRIYLKLHYTCQRILFLKPSCVFDVITWPIQAFVKRKLIIFIKKCLLCKVGEDLCRGSVPTFMPPDNPLDVDLLALASAVLQAVDLGLLRTLSVRGKCSCFGGGEVLAGYEHDPGPDHVILRALSLLIIRSLEIKFQNCSSANEMKVDYQRFMSELLTFLKPHLQPSLQSHNLCEWLSRVFIEQDDDMLEAAKALLGIYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDPTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFLTICNYFDVTESKDNIHICCISSLVQGRNSNSAEASPLAVVGSHTDAHSWVSWASAASSEPLNHGVTLEKAHTKLQANCLSTPGASQSLVDYDSSDDSEEGSTSLCLVNSRLTSSHQEAMKKTQDTFGASGDKKELSPESQSRPLVTEESNTLFSVYCDIAPNNTASEVGISYRTVKCFEELQGAIYRLQKKNLFPYNPTALLKLLKHIETIYNKSMTPS
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4760121..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4766775)
location: region:4760121-4766775:1
so has part: feature:4760121-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4766775:1:exon

XP_019839074.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4760121-4760519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4765893-4766775:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X1
translation: METFFEALEQLYKKVLLGATLENDSHDYIFYLYPAFSDQDCSTTTSSDCSNAPDVQDKQEPSSVSLPTFSVAPMCLQRHSQMSSTREIMLLQLTVIKVMITRILSVETEFHAKEKYRDIIKILLKSSDIESQLTCMFQNSEKLLSHMAAKCLALILYFQLKEKITLSNSWISFCQKNISEYSESNKVVYCLWILTFVIKEIFKDTSSQKTEILKQFLTPFDTLFEAFYKSLLSQHFENHQDASKLINSLICFLELLELLIASRIYLKLHYTCQRILFLKPSCVFDVITWPIQAFVKRKLIIFIKKCLLCKVGEDLCRGSVPTFMPPDNPLDVDLLALASAVLQAVDLGLLRTLSVRGKCSCFGGGEVLAGYEHDPGPDHVILRALSLLIIRSLEIKFQNCSSANEMKVDYQRFMSELLTFLKPHLQPSLQSHNLCEWLSRVFIEQDDDMLEAAKALLGIYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDPTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFLTICNYFDVTESKDNIHICCISSLVQGRNSNSAEASPLAVVGSHTDAHSWVSWASAASSEPLNHGVTLEKAHTKLQANCLSTPGASQSLVDYDSSDDSEEGSTSLCLVNSRLTSSHQEAMKKTQDTFGASGDKKELSPESQSRPLVTEESNTLFSVYCDIAPNNTASEVGISYRTVKCFEELQGAIYRLQKKNLFPYNPTALLKLLKHIETIYNKSMTPS
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4760121..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4766775)
location: region:4760121-4766775:1
so has part: feature:4760121-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4766775:1:exon

XP_019839075.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4760121-4760519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4765893-4766775:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X1
translation: METFFEALEQLYKKVLLGATLENDSHDYIFYLYPAFSDQDCSTTTSSDCSNAPDVQDKQEPSSVSLPTFSVAPMCLQRHSQMSSTREIMLLQLTVIKVMITRILSVETEFHAKEKYRDIIKILLKSSDIESQLTCMFQNSEKLLSHMAAKCLALILYFQLKEKITLSNSWISFCQKNISEYSESNKVVYCLWILTFVIKEIFKDTSSQKTEILKQFLTPFDTLFEAFYKSLLSQHFENHQDASKLINSLICFLELLELLIASRIYLKLHYTCQRILFLKPSCVFDVITWPIQAFVKRKLIIFIKKCLLCKVGEDLCRGSVPTFMPPDNPLDVDLLALASAVLQAVDLGLLRTLSVRGKCSCFGGGEVLAGYEHDPGPDHVILRALSLLIIRSLEIKFQNCSSANEMKVDYQRFMSELLTFLKPHLQPSLQSHNLCEWLSRVFIEQDDDMLEAAKALLGIYLKLTRECEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKNIGFDPTVLLDFLISSETCFLEYFVRYLKLLQKDWDNFLTICNYFDVTESKDNIHICCISSLVQGRNSNSAEASPLAVVGSHTDAHSWVSWASAASSEPLNHGVTLEKAHTKLQANCLSTPGASQSLVDYDSSDDSEEGSTSLCLVNSRLTSSHQEAMKKTQDTFGASGDKKELSPESQSRPLVTEESNTLFSVYCDIAPNNTASEVGISYRTVKCFEELQGAIYRLQKKNLFPYNPTALLKLLKHIETIYNKSMTPS
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4760121..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4765893..4766775)
location: region:4760121-4766775:1
so has part: feature:4760121-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4765893-4766775:1:exon

XP_019839076.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4760121-4760519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4765893-4766775:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X2
translation: METFFEALEQLYKKVLLGATLENDSHDYIFYLYPAFSDQDCSTTTSSDCSNAPDVQDKQEPSSVSLPTFSVAPMCLQRHSQMSSTREIMLLQLTVIKVMITRILSVETEFHAKEKYRDIIKILLKSSDIESQLTCMFQNSEKLLSHMAAKCLALILYFQLKEKITLSNSWISFCQKNISEYSESNKVVYCLWILTFVIKEIFKDTSSQKTEILKQFLTPFDTLFEAFYKSLLSQHFENHQDASKLINSLICFLELLELLIASRIYLKLHYTCQRILFLKPSCVFDVITWPIQAFVKRKLIIFIKKCLLCKVGEDLCRGSVPTFMPPDNPLDVDLLALASAVLQAVDLGLLRTLSVRGKCSCFGGGEVLAGYEHDPGPDHVILRALSLLIIRSLEIKFQNCSSANEMKVDYQRFMSELLTFLKPHLQPSLQSHNLCEWLSRVFIEQDDDMLEAAKALLGIYLKLTRNSNSAEASPLAVVGSHTDAHSWVSWASAASSEPLNHGVTLEKAHTKLQANCLSTPGASQSLVDYDSSDDSEEGSTSLCLVNSRLTSSHQEAMKKTQDTFGASGDKKELSPESQSRPLVTEESNTLFSVYCDIAPNNTASEVGISYRTVKCFEELQGAIYRLQKKNLFPYNPTALLKLLKHIETIYNKSMTPS
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4760121..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4766196..4766775)
location: region:4760121-4766775:1
so has part: feature:4760121-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4766196-4766775:1:exon

XP_019839077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4760121-4760519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4766196-4766775:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X3
translation: METFFEALEQLYKKVLLGATLENDSHDYIFYLYPAFSDQDCSTTTSSDCSNAPDVQDKQEPSSVSLPTFSVAPMCLQRHSQMSSTREIMLLQLTVIKVMITRILSVETEFHAKEKYRDIIKILLKSSDIESQLTCMFQNSEKLLSHMAAKCLALILYFQLKEKITLSNSWISFCQKNISEYSESNKVVYCLWILTFVIKEIFKDTSSQKTEILKQFLTPFDTLFEAFYKSLLSQHFENHQDASKLINSLICFLELLELLIASRIYLKLHYTCQRILFLKPSCVFDVITWPIQAFVKRKLIIFIKKCLLCKVGEDLCRGSVPTFMPPDNPLDVDLLALASAVLQAVDLGLLRTLSVRGKCSCFGGGEVLAGYEHDPGPDHVILRALSLLIIRSLEIKFQNCSSANEMKVDYQRFMSELLTFLKPHLQPSLQSHNLCEWLSRVFIEQDDDMLEAAKALLGIYLKLTRERDFLLMVVGVVLCCQFLLVL
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(4760121..4760519,4760637..4760726,4761563..4761704,4762374..4762964,4763943..4764114,4764822..4764888)
location: region:4760121-4764888:1
so has part: feature:4760121-4760519:1:exon
so has part: feature:4760637-4760726:1:exon
so has part: feature:4761563-4761704:1:exon
so has part: feature:4762374-4762964:1:exon
so has part: feature:4763943-4764114:1:exon
so has part: feature:4764822-4764888:1:exon

XP_019839078.1
type: Protein
SIO_000068: ncbiprotein

position:4764888:1
position: 4764888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4760121-4760519:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4760637-4760726:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4761563-4761704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4762374-4762964:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4763943-4764114:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4764822-4764888:1:exon

CERS3
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: CERS3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4812677..4956951
location: region:4812677-4956951:1
so has part: feature:4812677-4956951:1:exon
subclass of: SO_0000010

109575125
type: Gene
SIO_000068: ncbigene

position:4812677:1
position: 4812677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4956951:1
position: 4956951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4812677-4956951:1:exon

CERS3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: CERS3
product: ceramide synthase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983175.1
SIO_010081: CERS3
subclass of: SO_0000673
so part of: CERS3
location: join(4812677..4812849,4827775..4827892,4835238..4835356,4848534..4848591,4849276..4849326,4856171..4856263,4872002..4872010,4876546..4876652,4897406..4897559,4955095..4956951)
location: region:4812677-4956951:1
so has part: feature:4812677-4812849:1:exon
so has part: feature:4827775-4827892:1:exon
so has part: feature:4835238-4835356:1:exon
so has part: feature:4848534-4848591:1:exon
so has part: feature:4849276-4849326:1:exon
so has part: feature:4856171-4856263:1:exon
so has part: feature:4872002-4872010:1:exon
so has part: feature:4876546-4876652:1:exon
so has part: feature:4897406-4897559:1:exon
so has part: feature:4955095-4956951:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4812677-4812849:1:exon

position:4812849:1
position: 4812849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4827775-4827892:1:exon

position:4827775:1
position: 4827775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4827892:1
position: 4827892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4835238-4835356:1:exon

position:4835238:1
position: 4835238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4835356:1
position: 4835356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4848534-4848591:1:exon

position:4848534:1
position: 4848534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4848591:1
position: 4848591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4849276-4849326:1:exon

position:4849276:1
position: 4849276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4849326:1
position: 4849326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4856171-4856263:1:exon

position:4856171:1
position: 4856171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4856263:1
position: 4856263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4872002-4872010:1:exon

position:4872002:1
position: 4872002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4872010:1
position: 4872010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4876546-4876652:1:exon

position:4876546:1
position: 4876546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4876652:1
position: 4876652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4897406-4897559:1:exon

position:4897406:1
position: 4897406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4897559:1
position: 4897559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4955095-4956951:1:exon

position:4955095:1
position: 4955095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CERS3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: CERS3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 3
translation: MFQTFKEWFWLERFWLPPTVKWSDLEDHDGLIFVKPSHLYMTIPYAFVLIIIRHFFQKFIASPLAKTFGIKEEVRKKIIPNSVLEXFFKHSTKKPSQTDIYGLAKKCNLTERQVERWFRRRQNQDRPCRMKKFQESCWRFTFYLIITIAGIAFLYDKPWVYDLWEVWKGYPRQPLLPSQYWYYILEMSFYWSLLFSLGSDIKRKWMESAKMFSYAGWKQTCNTLFFIFSTVFLISRLIIFPFWILYCTLILPLHYLQPFFSYIFLNLQLMVLQXLNLYWSYLILKMLKRSIFTKSIRDVRSDSEDEYEEEEEEEEKKKEAREGKETDRLKNSLGANRHLIPNGQHGY
SIO_010081: CERS3
subclass of: SO_0000673
so part of: CERS3
location: join(4812677..4812849,4827775..4827892,4835238..4835356,4848534..4848591,4849276..4849326,4856171..4856263,4872002..4872010,4876546..4876652,4897406..4897559,4955095..4955256)
location: region:4812677-4955256:1
so has part: feature:4812677-4812849:1:exon
so has part: feature:4827775-4827892:1:exon
so has part: feature:4835238-4835356:1:exon
so has part: feature:4848534-4848591:1:exon
so has part: feature:4849276-4849326:1:exon
so has part: feature:4856171-4856263:1:exon
so has part: feature:4872002-4872010:1:exon
so has part: feature:4876546-4876652:1:exon
so has part: feature:4897406-4897559:1:exon
so has part: feature:4955095-4955256:1:exon

XP_019838734.1
type: Protein
SIO_000068: ncbiprotein

position:4955256:1
position: 4955256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4812677-4812849:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4827775-4827892:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4835238-4835356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4848534-4848591:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4849276-4849326:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4856171-4856263:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4872002-4872010:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4876546-4876652:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4897406-4897559:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4955095-4955256:1:exon

LOC109575126
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575126
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4991581..4997504
location: region:4991581-4997504:1
so has part: feature:4991581-4997504:1:exon

109575126
type: Gene
SIO_000068: ncbigene

position:4991581:1
position: 4991581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4997504:1
position: 4997504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4991581-4997504:1:exon

LOC109575126
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575126
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575126
subclass of: SO_0000673
so part of: LOC109575126
location: 4991581..4991604
location: region:4991581-4991604:1
so has part: feature:4991581-4991604:1:exon

position:4991604:1
position: 4991604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4991581-4991604:1:exon

LOC109575126
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575126
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575126
subclass of: SO_0000673
so part of: LOC109575126
location: 4995469..4996157
location: region:4995469-4996157:1
so has part: feature:4995469-4996157:1:exon

position:4995469:1
position: 4995469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4996157:1
position: 4996157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4995469-4996157:1:exon

LOC109575126
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575126
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575126
subclass of: SO_0000673
so part of: LOC109575126
location: 4997498..4997504
location: region:4997498-4997504:1
so has part: feature:4997498-4997504:1:exon

position:4997498:1
position: 4997498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4997498-4997504:1:exon

ADAMTS17
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: ADAMTS17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5066781..5482160
location: region:5066781-5482160:1
so has part: feature:5066781-5482160:1:exon
subclass of: SO_0000010

109575612
type: Gene
SIO_000068: ncbigene

position:5066781:1
position: 5066781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5482160:1
position: 5482160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5066781-5482160:1:exon

ADAMTS17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ADAMTS17
product: ADAM metallopeptidase with thrombospondin type 1 motif 17
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_019983858.1
SIO_010081: ADAMTS17
subclass of: SO_0000673
so part of: ADAMTS17
location: join(5066781..5066807,5078674..5078827,5137222..5137394,5159675..5159758,5160433..5160590,5168593..5168636,5240784..5240889,5279081..5279221,5281231..5281381,5318133..5318237,5319226..5319371,5333844..5334010,5345852..5345979,5360094..5360214,5381671..5381751,5390768..5390925,5394053..5394212,5396231..5396366,5459088..5459292,5462662..5462814,5477894..5478071,5479203..5482160)
location: region:5066781-5482160:1
so has part: feature:5066781-5066807:1:exon
so has part: feature:5078674-5078827:1:exon
so has part: feature:5137222-5137394:1:exon
so has part: feature:5159675-5159758:1:exon
so has part: feature:5160433-5160590:1:exon
so has part: feature:5168593-5168636:1:exon
so has part: feature:5240784-5240889:1:exon
so has part: feature:5279081-5279221:1:exon
so has part: feature:5281231-5281381:1:exon
so has part: feature:5318133-5318237:1:exon
so has part: feature:5319226-5319371:1:exon
so has part: feature:5333844-5334010:1:exon
so has part: feature:5345852-5345979:1:exon
so has part: feature:5360094-5360214:1:exon
so has part: feature:5381671-5381751:1:exon
so has part: feature:5390768-5390925:1:exon
so has part: feature:5394053-5394212:1:exon
so has part: feature:5396231-5396366:1:exon
so has part: feature:5459088-5459292:1:exon
so has part: feature:5462662-5462814:1:exon
so has part: feature:5477894-5478071:1:exon
so has part: feature:5479203-5482160:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5066781-5066807:1:exon

position:5066807:1
position: 5066807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5078674-5078827:1:exon

position:5078674:1
position: 5078674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5078827:1
position: 5078827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5137222-5137394:1:exon

position:5137222:1
position: 5137222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5137394:1
position: 5137394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5159675-5159758:1:exon

position:5159675:1
position: 5159675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5159758:1
position: 5159758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5160433-5160590:1:exon

position:5160433:1
position: 5160433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5160590:1
position: 5160590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5168593-5168636:1:exon

position:5168593:1
position: 5168593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5168636:1
position: 5168636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5240784-5240889:1:exon

position:5240784:1
position: 5240784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5240889:1
position: 5240889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5279081-5279221:1:exon

position:5279081:1
position: 5279081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5279221:1
position: 5279221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5281231-5281381:1:exon

position:5281231:1
position: 5281231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5281381:1
position: 5281381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5318133-5318237:1:exon

position:5318133:1
position: 5318133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5318237:1
position: 5318237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5319226-5319371:1:exon

position:5319226:1
position: 5319226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5319371:1
position: 5319371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5333844-5334010:1:exon

position:5333844:1
position: 5333844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5334010:1
position: 5334010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5345852-5345979:1:exon

position:5345852:1
position: 5345852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5345979:1
position: 5345979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5360094-5360214:1:exon

position:5360094:1
position: 5360094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5360214:1
position: 5360214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5381671-5381751:1:exon

position:5381671:1
position: 5381671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5381751:1
position: 5381751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5390768-5390925:1:exon

position:5390768:1
position: 5390768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5390925:1
position: 5390925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5394053-5394212:1:exon

position:5394053:1
position: 5394053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5394212:1
position: 5394212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5396231-5396366:1:exon

position:5396231:1
position: 5396231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5396366:1
position: 5396366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5459088-5459292:1:exon

position:5459088:1
position: 5459088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5459292:1
position: 5459292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5462662-5462814:1:exon

position:5462662:1
position: 5462662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5462814:1
position: 5462814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5477894-5478071:1:exon

position:5477894:1
position: 5477894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5478071:1
position: 5478071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5479203-5482160:1:exon

position:5479203:1
position: 5479203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ADAMTS17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ADAMTS17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: A disintegrin and metalloproteinase with thrombospondin motifs 17
translation: MVQYHGAEAAQRFILTVMNMVYNMFQHQSLGIKVNIQVTKLVLLRQRPAKLSIGHHGERSLESFCHWQNEEYGGARYLGNNQVPGGKDDTPPVDAAVFVTRTDFCVHKDEPCDTVGIAYLGGVCSAKRKCVLAEDNGLNLAFTIAHELGHNLGMNHDDDHSSCAGRSHIMSGEWVKGRSPSDLSWSSCSRDDLENFLKSKVSTCLLVTDPRSRHAVRLPHKLPGMHYSANEQCQILFGTNATFCRNMEQHLMCAGLWCLVEGDTSCKTKLDPPLDGTECGADKWCRAGECVSKTPIPEHVDGDWSPWGAWSMCSRTCGTGARFRQRKCDNPPPGPGGTHCLGASVEHTVCENLPCPKGLPSFRDQQCQTHDRLSSKKKGLLTAVVVDDKPCELYCSPLGKESPLLVADRVLDGTPCGPYETDLCVHGRCQKIGCDGIIGSAAKEDRCGVCSGDGKTCRVVKGDFSHARGTGYIEAAIIPAGARRIRVVEDKPAHSFLALKDSSKRSINSDWKIELPGEFQIAGTTVRYVRRGLWEKISAKGPTKMPLHLMVLLFHDQNYGIHYEYTIPVNYTAENQSEPEKPQDSLFIWTHSGWEGCSVQCGGGERRSIVSCTRIVNKTTTLVNDSDCPQASRPEPQVRRCNLHPCQSRWVAGPWSPCSATCEKGIQHREVTCVYQLQNGTHVATRPLYCPVPRPSPVQSCEGQDCLSIWEASEWSQCSASCGKGTQKRTVTCTNSQGKCDASTRPRAEEPCEDYSGCYEWKTGSWSKCSSTCGKGLQSRVVQCMHKVTGRHGNECPALSKPAAYKQCHQEVCNDKINVNTITSPRLAALTYKCTRDQWTVYCRVIREKNLCQDMRWYQRCCQTCRDFYANKMRQPPPPPSS
SIO_010081: ADAMTS17
subclass of: SO_0000673
so part of: ADAMTS17
location: join(5137335..5137394,5159675..5159758,5160433..5160590,5168593..5168636,5240784..5240889,5279081..5279221,5281231..5281381,5318133..5318237,5319226..5319371,5333844..5334010,5345852..5345979,5360094..5360214,5381671..5381751,5390768..5390925,5394053..5394212,5396231..5396366,5459088..5459292,5462662..5462814,5477894..5478071,5479203..5479369)
location: region:5137335-5479369:1
so has part: feature:5137335-5137394:1:exon
so has part: feature:5159675-5159758:1:exon
so has part: feature:5160433-5160590:1:exon
so has part: feature:5168593-5168636:1:exon
so has part: feature:5240784-5240889:1:exon
so has part: feature:5279081-5279221:1:exon
so has part: feature:5281231-5281381:1:exon
so has part: feature:5318133-5318237:1:exon
so has part: feature:5319226-5319371:1:exon
so has part: feature:5333844-5334010:1:exon
so has part: feature:5345852-5345979:1:exon
so has part: feature:5360094-5360214:1:exon
so has part: feature:5381671-5381751:1:exon
so has part: feature:5390768-5390925:1:exon
so has part: feature:5394053-5394212:1:exon
so has part: feature:5396231-5396366:1:exon
so has part: feature:5459088-5459292:1:exon
so has part: feature:5462662-5462814:1:exon
so has part: feature:5477894-5478071:1:exon
so has part: feature:5479203-5479369:1:exon

XP_019839417.1
type: Protein
SIO_000068: ncbiprotein

position:5137335:1
position: 5137335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5479369:1
position: 5479369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5137335-5137394:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5159675-5159758:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5160433-5160590:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5168593-5168636:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5240784-5240889:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5279081-5279221:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5281231-5281381:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5318133-5318237:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5319226-5319371:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5333844-5334010:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5345852-5345979:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5360094-5360214:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5381671-5381751:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5390768-5390925:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5394053-5394212:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5396231-5396366:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5459088-5459292:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5462662-5462814:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5477894-5478071:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5479203-5479369:1:exon

LYSMD4
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5561222..5573418
location: region:5561222-5573418:1
so has part: feature:5561222-5573418:1:exon
subclass of: SO_0000010

109575685
type: Gene
SIO_000068: ncbigene

position:5561222:1
position: 5561222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5573418:1
position: 5573418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5561222-5573418:1:exon

LYSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LYSMD4
product: LysM domain containing 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 6 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_019983961.1
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(5561222..5561273,5562592..5562881,5571127..5573418)
location: region:5561222-5573418:1
so has part: feature:5561222-5561273:1:exon
so has part: feature:5562592-5562881:1:exon
so has part: feature:5571127-5573418:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5561222-5561273:1:exon

position:5561273:1
position: 5561273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5562592-5562881:1:exon

position:5562592:1
position: 5562592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5562881:1
position: 5562881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5571127-5573418:1:exon

position:5571127:1
position: 5571127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LYSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 4
translation: MRQKEVITKTFQSPAVVCRTPTSHVYMFENGVEDSEDSSEEESHRVALRPRGKEGQKKGAHHPHRPGAGDVVLLQRELTQGDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKIPVKNHGILTETHKELRPLLNSSSETRVTFEEQPDPDRAAVNASASSSSLTDFFKGIDQNIEHAVQSEIFXSESYSIETSSQPLLPAPPKIPTNGADCGIQWWNAVFIMLLIGVVLPVFYLVYFKIQATSETPSILNTTAIPNGSMAGNAVPGQAPRLAIPMPTIPSSDSQFSQTTHGGN
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(5562600..5562881,5571127..5571738)
location: region:5562600-5571738:1
so has part: feature:5562600-5562881:1:exon
so has part: feature:5571127-5571738:1:exon

XP_019839520.1
type: Protein
SIO_000068: ncbiprotein

position:5562600:1
position: 5562600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5571738:1
position: 5571738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5562600-5562881:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5571127-5571738:1:exon

MEF2A
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5605726..5782816)
location: region:5605726-5782816:-1
so has part: feature:5605726-5782816:-1:exon
subclass of: SO_0000010

109575409
type: Gene
SIO_000068: ncbigene

position:5605726:-1
position: 5605726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5782816:-1
position: 5782816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5605726-5782816:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 52 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 86 samples with support for all annotated introns
transcript id: XM_019983507.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5605726..5609823,5611068..5611194,5614994..5615120,5632744..5632931,5646683..5646742,5647494..5647713,5650030..5650161,5671065..5671268,5690359..5690550,5782645..5782816))
location: region:5605726-5782816:-1
so has part: feature:5782645-5782816:-1:exon
so has part: feature:5690359-5690550:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5650030-5650161:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5605726-5609823:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5782645-5782816:-1:exon

position:5782645:-1
position: 5782645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5690359-5690550:-1:exon

position:5690359:-1
position: 5690359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5690550:-1
position: 5690550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5671065-5671268:-1:exon

position:5671065:-1
position: 5671065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5671268:-1
position: 5671268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5650030-5650161:-1:exon

position:5650030:-1
position: 5650030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5650161:-1
position: 5650161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5647494-5647713:-1:exon

position:5647494:-1
position: 5647494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5647713:-1
position: 5647713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5646683-5646742:-1:exon

position:5646683:-1
position: 5646683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5646742:-1
position: 5646742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5632744-5632931:-1:exon

position:5632744:-1
position: 5632744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5632931:-1
position: 5632931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5614994-5615120:-1:exon

position:5614994:-1
position: 5614994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5615120:-1
position: 5615120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5611068-5611194:-1:exon

position:5611068:-1
position: 5611068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5611194:-1
position: 5611194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5605726-5609823:-1:exon

position:5609823:-1
position: 5609823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 52 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 144 samples with support for all annotated introns
transcript id: XM_019983508.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5605726..5609823,5611068..5611194,5614994..5615120,5618818..5618841,5632744..5632931,5646683..5646742,5647494..5647713,5650030..5650161,5671065..5671268,5690359..5690550,5749803..5749888,5782645..5782796))
location: region:5605726-5782796:-1
so has part: feature:5782645-5782796:-1:exon
so has part: feature:5749803-5749888:-1:exon
so has part: feature:5690359-5690550:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5650030-5650161:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5618818-5618841:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5605726-5609823:-1:exon

position:5782796:-1
position: 5782796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5782645-5782796:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5749803-5749888:-1:exon

position:5749803:-1
position: 5749803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5749888:-1
position: 5749888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5690359-5690550:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5650030-5650161:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5618818-5618841:-1:exon

position:5618818:-1
position: 5618818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5618841:-1
position: 5618841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5605726-5609823:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 52 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 213 samples with support for all annotated introns
transcript id: XM_019983506.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5605726..5609823,5611068..5611194,5614994..5615120,5632744..5632931,5646683..5646742,5647494..5647713,5650030..5650161,5671065..5671268,5690359..5690550,5749803..5749888,5782645..5782795))
location: region:5605726-5782795:-1
so has part: feature:5782645-5782795:-1:exon
so has part: feature:5749803-5749888:-1:exon
so has part: feature:5690359-5690550:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5650030-5650161:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5605726-5609823:-1:exon

position:5782795:-1
position: 5782795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5782645-5782795:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5749803-5749888:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5690359-5690550:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5650030-5650161:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5605726-5609823:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 52 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
transcript id: XM_019983504.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5605726..5609823,5611068..5611194,5614994..5615120,5618818..5618841,5632744..5632931,5646683..5646742,5647494..5647713,5649827..5649964,5671065..5671268,5690359..5690550,5782645..5782794))
location: region:5605726-5782794:-1
so has part: feature:5782645-5782794:-1:exon
so has part: feature:5690359-5690550:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5649827-5649964:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5618818-5618841:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5605726-5609823:-1:exon

position:5782794:-1
position: 5782794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5782645-5782794:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5690359-5690550:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5649827-5649964:-1:exon

position:5649827:-1
position: 5649827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5649964:-1
position: 5649964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5618818-5618841:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5605726-5609823:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 52 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 146 samples with support for all annotated introns
transcript id: XM_019983503.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5605726..5609823,5611068..5611194,5614994..5615120,5618818..5618841,5632744..5632931,5646683..5646742,5647494..5647713,5649827..5649964,5671065..5671268,5690359..5690550,5749803..5749888,5782645..5782794))
location: region:5605726-5782794:-1
so has part: feature:5782645-5782794:-1:exon
so has part: feature:5749803-5749888:-1:exon
so has part: feature:5690359-5690550:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5649827-5649964:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5618818-5618841:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5605726-5609823:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5782645-5782794:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5749803-5749888:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5690359-5690550:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5649827-5649964:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5618818-5618841:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5605726-5609823:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 49 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 215 samples with support for all annotated introns
transcript id: XM_019983505.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5605728..5609823,5611068..5611194,5614994..5615120,5632744..5632931,5646683..5646742,5647494..5647713,5649827..5649964,5671065..5671268,5690359..5690550,5749803..5749888,5782645..5782758))
location: region:5605728-5782758:-1
so has part: feature:5782645-5782758:-1:exon
so has part: feature:5749803-5749888:-1:exon
so has part: feature:5690359-5690550:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5649827-5649964:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5605728-5609823:-1:exon

position:5605728:-1
position: 5605728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5782758:-1
position: 5782758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5782645-5782758:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5749803-5749888:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5690359-5690550:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5649827-5649964:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5605728-5609823:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X2
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPSALSYTNPGSSLVSPSLAASSALADTSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALNSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQPQPPPPPPQAPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPVVLGRPPNSEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5609463..5609823,5611068..5611194,5614994..5615120,5632744..5632931,5646683..5646742,5647494..5647713,5649827..5649964,5671065..5671268,5690359..5690412))
location: region:5609463-5690412:-1
so has part: feature:5690359-5690412:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5649827-5649964:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5609463-5609823:-1:exon

XP_019839064.1
type: Protein
SIO_000068: ncbiprotein

position:5609463:-1
position: 5609463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5690412:-1
position: 5690412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5690359-5690412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5649827-5649964:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5609463-5609823:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X1
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPSALSYTNPGSSLVSPSLAASSALADTSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALNSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQPQPPPPPPQAPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPVVLGRPPNSEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5609463..5609823,5611068..5611194,5614994..5615120,5618818..5618841,5632744..5632931,5646683..5646742,5647494..5647713,5649827..5649964,5671065..5671268,5690359..5690412))
location: region:5609463-5690412:-1
so has part: feature:5690359-5690412:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5649827-5649964:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5618818-5618841:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5609463-5609823:-1:exon

XP_019839062.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5690359-5690412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5649827-5649964:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5618818-5618841:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5609463-5609823:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X1
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPSALSYTNPGSSLVSPSLAASSALADTSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALNSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQPQPPPPPPQAPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPVVLGRPPNSEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5609463..5609823,5611068..5611194,5614994..5615120,5618818..5618841,5632744..5632931,5646683..5646742,5647494..5647713,5649827..5649964,5671065..5671268,5690359..5690412))
location: region:5609463-5690412:-1
so has part: feature:5690359-5690412:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5649827-5649964:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5618818-5618841:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5609463-5609823:-1:exon

XP_019839063.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5690359-5690412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5649827-5649964:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5618818-5618841:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5609463-5609823:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X3
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPSALSYTNPGSSLVSPSLAASSALADTSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALNSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQPQPPPPPPQAPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPVVLGRPPNSEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5609463..5609823,5611068..5611194,5614994..5615120,5632744..5632931,5646683..5646742,5647494..5647713,5650030..5650161,5671065..5671268,5690359..5690412))
location: region:5609463-5690412:-1
so has part: feature:5690359-5690412:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5650030-5650161:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5609463-5609823:-1:exon

XP_019839065.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5690359-5690412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5650030-5650161:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5609463-5609823:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X3
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPSALSYTNPGSSLVSPSLAASSALADTSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALNSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQPQPPPPPPQAPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPVVLGRPPNSEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5609463..5609823,5611068..5611194,5614994..5615120,5632744..5632931,5646683..5646742,5647494..5647713,5650030..5650161,5671065..5671268,5690359..5690412))
location: region:5609463-5690412:-1
so has part: feature:5690359-5690412:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5650030-5650161:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5609463-5609823:-1:exon

XP_019839066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5690359-5690412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5650030-5650161:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5609463-5609823:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X4
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPSALSYTNPGSSLVSPSLAASSALADTSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGSLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALNSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQPQPPPPPPQAPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPVVLGRPPNSEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(5609463..5609823,5611068..5611194,5614994..5615120,5618818..5618841,5632744..5632931,5646683..5646742,5647494..5647713,5650030..5650161,5671065..5671268,5690359..5690412))
location: region:5609463-5690412:-1
so has part: feature:5690359-5690412:-1:exon
so has part: feature:5671065-5671268:-1:exon
so has part: feature:5650030-5650161:-1:exon
so has part: feature:5647494-5647713:-1:exon
so has part: feature:5646683-5646742:-1:exon
so has part: feature:5632744-5632931:-1:exon
so has part: feature:5618818-5618841:-1:exon
so has part: feature:5614994-5615120:-1:exon
so has part: feature:5611068-5611194:-1:exon
so has part: feature:5609463-5609823:-1:exon

XP_019839067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5690359-5690412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5671065-5671268:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5650030-5650161:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5647494-5647713:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5646683-5646742:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5632744-5632931:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5618818-5618841:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5614994-5615120:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5611068-5611194:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5609463-5609823:-1:exon

LOC109575306
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5994476..5995932)
location: region:5994476-5995932:-1
so has part: feature:5994476-5995932:-1:exon
subclass of: SO_0000011

109575306
type: Gene
SIO_000068: ncbigene

position:5994476:-1
position: 5994476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5995932:-1
position: 5995932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5994476-5995932:-1:exon

LOC109575306
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575306
product: uncharacterized LOC109575306
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_002183202.1
SIO_010081: LOC109575306
subclass of: SO_0000673
so part of: LOC109575306
location: complement(join(5994476..5995136,5995456..5995494,5995833..5995932))
location: region:5994476-5995932:-1
so has part: feature:5995833-5995932:-1:exon
so has part: feature:5995456-5995494:-1:exon
so has part: feature:5994476-5995136:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5995833-5995932:-1:exon

position:5995833:-1
position: 5995833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5995456-5995494:-1:exon

position:5995456:-1
position: 5995456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5995494:-1
position: 5995494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5994476-5995136:-1:exon

position:5995136:-1
position: 5995136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRC28
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LRRC28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6016907..6207540)
location: region:6016907-6207540:-1
so has part: feature:6016907-6207540:-1:exon
subclass of: SO_0000010

109575543
type: Gene
SIO_000068: ncbigene

position:6016907:-1
position: 6016907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6207540:-1
position: 6207540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6016907-6207540:-1:exon

LRRC28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LRRC28
product: leucine rich repeat containing 28, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 216 samples with support for all annotated introns
transcript id: XM_019983755.1
SIO_010081: LRRC28
subclass of: SO_0000673
so part of: LRRC28
location: complement(join(6016907..6017203,6052440..6052599,6054206..6054381,6077785..6077887,6162410..6162547,6163184..6163221,6183177..6183217,6203442..6203669,6207457..6207540))
location: region:6016907-6207540:-1
so has part: feature:6207457-6207540:-1:exon
so has part: feature:6203442-6203669:-1:exon
so has part: feature:6183177-6183217:-1:exon
so has part: feature:6163184-6163221:-1:exon
so has part: feature:6162410-6162547:-1:exon
so has part: feature:6077785-6077887:-1:exon
so has part: feature:6054206-6054381:-1:exon
so has part: feature:6052440-6052599:-1:exon
so has part: feature:6016907-6017203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6207457-6207540:-1:exon

position:6207457:-1
position: 6207457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6203442-6203669:-1:exon

position:6203442:-1
position: 6203442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6203669:-1
position: 6203669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6183177-6183217:-1:exon

position:6183177:-1
position: 6183177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6183217:-1
position: 6183217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6163184-6163221:-1:exon

position:6163184:-1
position: 6163184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6163221:-1
position: 6163221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6162410-6162547:-1:exon

position:6162410:-1
position: 6162410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6162547:-1
position: 6162547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6077785-6077887:-1:exon

position:6077785:-1
position: 6077785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6077887:-1
position: 6077887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6054206-6054381:-1:exon

position:6054206:-1
position: 6054206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6054381:-1
position: 6054381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6052440-6052599:-1:exon

position:6052440:-1
position: 6052440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6052599:-1
position: 6052599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6016907-6017203:-1:exon

position:6017203:-1
position: 6017203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRC28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LRRC28
product: leucine rich repeat containing 28, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 185 samples with support for all annotated introns
transcript id: XM_019983754.1
SIO_010081: LRRC28
subclass of: SO_0000673
so part of: LRRC28
location: complement(join(6016907..6017203,6052440..6052599,6054206..6054328,6097284..6097490,6162410..6162547,6163184..6163221,6183177..6183217,6203442..6203669,6207457..6207540))
location: region:6016907-6207540:-1
so has part: feature:6207457-6207540:-1:exon
so has part: feature:6203442-6203669:-1:exon
so has part: feature:6183177-6183217:-1:exon
so has part: feature:6163184-6163221:-1:exon
so has part: feature:6162410-6162547:-1:exon
so has part: feature:6097284-6097490:-1:exon
so has part: feature:6054206-6054328:-1:exon
so has part: feature:6052440-6052599:-1:exon
so has part: feature:6016907-6017203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6207457-6207540:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6203442-6203669:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6183177-6183217:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6163184-6163221:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6162410-6162547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6097284-6097490:-1:exon

position:6097284:-1
position: 6097284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6097490:-1
position: 6097490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6054206-6054328:-1:exon

position:6054328:-1
position: 6054328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6052440-6052599:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6016907-6017203:-1:exon

LRRC28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LRRC28
product: leucine rich repeat containing 28, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 9 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 262 samples with support for all annotated introns
transcript id: XM_019983753.1
SIO_010081: LRRC28
subclass of: SO_0000673
so part of: LRRC28
location: complement(join(6016907..6017203,6052440..6052599,6054206..6054381,6077785..6077887,6097284..6097490,6162410..6162547,6163184..6163221,6183177..6183217,6203442..6203669,6207457..6207540))
location: region:6016907-6207540:-1
so has part: feature:6207457-6207540:-1:exon
so has part: feature:6203442-6203669:-1:exon
so has part: feature:6183177-6183217:-1:exon
so has part: feature:6163184-6163221:-1:exon
so has part: feature:6162410-6162547:-1:exon
so has part: feature:6097284-6097490:-1:exon
so has part: feature:6077785-6077887:-1:exon
so has part: feature:6054206-6054381:-1:exon
so has part: feature:6052440-6052599:-1:exon
so has part: feature:6016907-6017203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6207457-6207540:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6203442-6203669:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6183177-6183217:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6163184-6163221:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6162410-6162547:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6097284-6097490:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6077785-6077887:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6054206-6054381:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6052440-6052599:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6016907-6017203:-1:exon

LRRC28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LRRC28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat-containing protein 28 isoform X3
translation: MASELCKTISVARLEKHKNLFLNYRNLQHFPLELLKDEGLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPDLGRSRELQYVYVDNNIHLKGLPSFLYNKVIGCSGCGAPIQVSEVKLLSFSSGQLTVFLPAEVKAIGTEKDHILPLQELAMRTLHHTYHASLKDLDFLSPVSLPRSLLELLHCPLGHCHRCSEPMFTIVYPKLFPLRETPMAGLHQGRTTVSFVAYCCSTQCLQTFDLLS
SIO_010081: LRRC28
subclass of: SO_0000673
so part of: LRRC28
location: complement(join(6017131..6017203,6052440..6052599,6054206..6054381,6077785..6077887,6162410..6162547,6163184..6163221,6183177..6183217,6203442..6203609))
location: region:6017131-6203609:-1
so has part: feature:6203442-6203609:-1:exon
so has part: feature:6183177-6183217:-1:exon
so has part: feature:6163184-6163221:-1:exon
so has part: feature:6162410-6162547:-1:exon
so has part: feature:6077785-6077887:-1:exon
so has part: feature:6054206-6054381:-1:exon
so has part: feature:6052440-6052599:-1:exon
so has part: feature:6017131-6017203:-1:exon

XP_019839314.1
type: Protein
SIO_000068: ncbiprotein

position:6017131:-1
position: 6017131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6203609:-1
position: 6203609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6203442-6203609:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6183177-6183217:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6163184-6163221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6162410-6162547:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6077785-6077887:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6054206-6054381:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6052440-6052599:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6017131-6017203:-1:exon

LRRC28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LRRC28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat-containing protein 28 isoform X2
translation: MASELCKTISVARLEKHKNLFLNYRNLQHFPLELLKDEGLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERLHLCLSLQYLTVDRNRLWCVPRHLCQLPSLNELSMAGNRLAFLPLGQLTVFLPAEVKAIGTEKDHILPLQELAMRTLHHTYHASLKDLDFLSPVSLPRSLLELLHCPLGHCHRCSEPMFTIVYPKLFPLRETPMAGLHQGRTTVSFVAYCCSTQCLQTFDLLS
SIO_010081: LRRC28
subclass of: SO_0000673
so part of: LRRC28
location: complement(join(6017131..6017203,6052440..6052599,6054206..6054328,6097284..6097490,6162410..6162547,6163184..6163221,6183177..6183217,6203442..6203609))
location: region:6017131-6203609:-1
so has part: feature:6203442-6203609:-1:exon
so has part: feature:6183177-6183217:-1:exon
so has part: feature:6163184-6163221:-1:exon
so has part: feature:6162410-6162547:-1:exon
so has part: feature:6097284-6097490:-1:exon
so has part: feature:6054206-6054328:-1:exon
so has part: feature:6052440-6052599:-1:exon
so has part: feature:6017131-6017203:-1:exon

XP_019839313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6203442-6203609:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6183177-6183217:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6163184-6163221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6162410-6162547:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6097284-6097490:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6054206-6054328:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6052440-6052599:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6017131-6017203:-1:exon

LRRC28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LRRC28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat-containing protein 28 isoform X1
translation: MASELCKTISVARLEKHKNLFLNYRNLQHFPLELLKDEGLQYLERLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLTLPERLHLCLSLQYLTVDRNRLWCVPRHLCQLPSLNELSMAGNRLAFLPLDLGRSRELQYVYVDNNIHLKGLPSFLYNKVIGCSGCGAPIQVSEVKLLSFSSGQLTVFLPAEVKAIGTEKDHILPLQELAMRTLHHTYHASLKDLDFLSPVSLPRSLLELLHCPLGHCHRCSEPMFTIVYPKLFPLRETPMAGLHQGRTTVSFVAYCCSTQCLQTFDLLS
SIO_010081: LRRC28
subclass of: SO_0000673
so part of: LRRC28
location: complement(join(6017131..6017203,6052440..6052599,6054206..6054381,6077785..6077887,6097284..6097490,6162410..6162547,6163184..6163221,6183177..6183217,6203442..6203609))
location: region:6017131-6203609:-1
so has part: feature:6203442-6203609:-1:exon
so has part: feature:6183177-6183217:-1:exon
so has part: feature:6163184-6163221:-1:exon
so has part: feature:6162410-6162547:-1:exon
so has part: feature:6097284-6097490:-1:exon
so has part: feature:6077785-6077887:-1:exon
so has part: feature:6054206-6054381:-1:exon
so has part: feature:6052440-6052599:-1:exon
so has part: feature:6017131-6017203:-1:exon

XP_019839312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6203442-6203609:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6183177-6183217:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6163184-6163221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6162410-6162547:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6097284-6097490:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6077785-6077887:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6054206-6054381:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6052440-6052599:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6017131-6017203:-1:exon

TTC23
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: TTC23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6209514..6368182
location: region:6209514-6368182:1
so has part: feature:6209514-6368182:1:exon
subclass of: SO_0000010

109575308
type: Gene
SIO_000068: ncbigene

position:6209514:1
position: 6209514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6368182:1
position: 6368182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6209514-6368182:1:exon

TTC23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: TTC23
product: tetratricopeptide repeat domain 23, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983299.1
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6209514..6209961,6260537..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346202,6351412..6351561,6366777..6366859,6367636..6368182)
location: region:6209514-6368182:1
so has part: feature:6209514-6209961:1:exon
so has part: feature:6260537-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346202:1:exon
so has part: feature:6351412-6351561:1:exon
so has part: feature:6366777-6366859:1:exon
so has part: feature:6367636-6368182:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6209514-6209961:1:exon

position:6209961:1
position: 6209961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6260537-6260736:1:exon

position:6260537:1
position: 6260537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6260736:1
position: 6260736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6274784-6274907:1:exon

position:6274784:1
position: 6274784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6274907:1
position: 6274907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6280298-6280448:1:exon

position:6280298:1
position: 6280298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6280448:1
position: 6280448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6280638-6280763:1:exon

position:6280638:1
position: 6280638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6280763:1
position: 6280763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6313152-6313329:1:exon

position:6313152:1
position: 6313152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6313329:1
position: 6313329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6333121-6333226:1:exon

position:6333121:1
position: 6333121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6333226:1
position: 6333226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6346075-6346202:1:exon

position:6346075:1
position: 6346075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6346202:1
position: 6346202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6351412-6351561:1:exon

position:6351412:1
position: 6351412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6351561:1
position: 6351561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6366777-6366859:1:exon

position:6366777:1
position: 6366777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6366859:1
position: 6366859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6367636-6368182:1:exon

position:6367636:1
position: 6367636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TTC23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: TTC23
product: tetratricopeptide repeat domain 23, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_019983296.1
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6209514..6209734,6209811..6209961,6260537..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346683)
location: region:6209514-6346683:1
so has part: feature:6209514-6209734:1:exon
so has part: feature:6209811-6209961:1:exon
so has part: feature:6260537-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346683:1:exon

position:6346683:1
position: 6346683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6209514-6209734:1:exon

position:6209734:1
position: 6209734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6209811-6209961:1:exon

position:6209811:1
position: 6209811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6260537-6260736:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6346075-6346683:1:exon

TTC23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: TTC23
product: tetratricopeptide repeat domain 23, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_019983298.1
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6209514..6209734,6260537..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346683)
location: region:6209514-6346683:1
so has part: feature:6209514-6209734:1:exon
so has part: feature:6260537-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346683:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6209514-6209734:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6260537-6260736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6346075-6346683:1:exon

TTC23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: TTC23
product: tetratricopeptide repeat domain 23, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 175 samples with support for all annotated introns
transcript id: XM_019983295.1
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6209514..6209770,6260537..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346682)
location: region:6209514-6346682:1
so has part: feature:6209514-6209770:1:exon
so has part: feature:6260537-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346682:1:exon

position:6346682:1
position: 6346682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6209514-6209770:1:exon

position:6209770:1
position: 6209770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6260537-6260736:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6346075-6346682:1:exon

TTC23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: TTC23
product: tetratricopeptide repeat domain 23, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_019983297.1
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6236389..6236525,6239886..6240061,6260537..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346683)
location: region:6236389-6346683:1
so has part: feature:6236389-6236525:1:exon
so has part: feature:6239886-6240061:1:exon
so has part: feature:6260537-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346683:1:exon

position:6236389:1
position: 6236389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6236389-6236525:1:exon

position:6236525:1
position: 6236525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6239886-6240061:1:exon

position:6239886:1
position: 6239886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6240061:1
position: 6240061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6260537-6260736:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6346075-6346683:1:exon

TTC23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: TTC23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 23 isoform X2
translation: MQESQETHISNHLDEIVAAVSITPRKKLQNQLLQRALFQPPREKLRLSEEKAKSYASSHEYKKALHELVHCMALTRICYGDSHWKLAEAHVNLAKGYLQLKGMSLQAKQHAEKAKEILTSSVAPPYSDNTDVFKCSVELFHTLGQALLSLQKFKEASKNLTKAEILSKEMLQCGKIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYTEISRGEKSLECVPILRELAAAEQALGFHDASINNLIQAHLIVLRGSPSREEAATSAHSVACAAIASGRPEHHDVAEQYFQDSMANLKDAEGKETAKFLSIQDDYCHFLQVTGQDEKAXSIXRESLEAKVAVFGDFSPEVAETYRLLGVADLAQGNQTGAHKKLKKCLQIQTLLYGPQDKRTLATQQTMDILSKAPEVPARPRPSPGAKAAFCAGGRPXXXXXXXRPSAAD
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6260557..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346202,6351412..6351561,6366777..6366859,6367636..6367750)
location: region:6260557-6367750:1
so has part: feature:6260557-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346202:1:exon
so has part: feature:6351412-6351561:1:exon
so has part: feature:6366777-6366859:1:exon
so has part: feature:6367636-6367750:1:exon

XP_019838858.1
type: Protein
SIO_000068: ncbiprotein

position:6260557:1
position: 6260557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6367750:1
position: 6367750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6260557-6260736:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6346075-6346202:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6351412-6351561:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6366777-6366859:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6367636-6367750:1:exon

TTC23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: TTC23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 23 isoform X1
translation: MQESQETHISNHLDEIVAAVSITPRKKLQNQLLQRALFQPPREKLRLSEEKAKSYASSHEYKKALHELVHCMALTRICYGDSHWKLAEAHVNLAKGYLQLKGMSLQAKQHAEKAKEILTSSVAPPYSDNTDVFKCSVELFHTLGQALLSLQKFKEASKNLTKAEILSKEMLQCGKIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYTEISRGEKSLECVPILRELAAAEQALGFHDASINNLIQAHLIVLRGSPSREEAATSAHSVACAAIASGRPEHHDVAEQYFQDSMANLKDAEGKETAKFLSIQDDYCHFLQVTGQDEVSEFGPQLTVIYSGNPGDIQRATPILCKP
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6260557..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346292)
location: region:6260557-6346292:1
so has part: feature:6260557-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346292:1:exon

XP_019838854.1
type: Protein
SIO_000068: ncbiprotein

position:6346292:1
position: 6346292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6260557-6260736:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6346075-6346292:1:exon

TTC23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: TTC23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 23 isoform X1
translation: MQESQETHISNHLDEIVAAVSITPRKKLQNQLLQRALFQPPREKLRLSEEKAKSYASSHEYKKALHELVHCMALTRICYGDSHWKLAEAHVNLAKGYLQLKGMSLQAKQHAEKAKEILTSSVAPPYSDNTDVFKCSVELFHTLGQALLSLQKFKEASKNLTKAEILSKEMLQCGKIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYTEISRGEKSLECVPILRELAAAEQALGFHDASINNLIQAHLIVLRGSPSREEAATSAHSVACAAIASGRPEHHDVAEQYFQDSMANLKDAEGKETAKFLSIQDDYCHFLQVTGQDEVSEFGPQLTVIYSGNPGDIQRATPILCKP
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6260557..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346292)
location: region:6260557-6346292:1
so has part: feature:6260557-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346292:1:exon

XP_019838855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6260557-6260736:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6346075-6346292:1:exon

TTC23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: TTC23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 23 isoform X1
translation: MQESQETHISNHLDEIVAAVSITPRKKLQNQLLQRALFQPPREKLRLSEEKAKSYASSHEYKKALHELVHCMALTRICYGDSHWKLAEAHVNLAKGYLQLKGMSLQAKQHAEKAKEILTSSVAPPYSDNTDVFKCSVELFHTLGQALLSLQKFKEASKNLTKAEILSKEMLQCGKIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYTEISRGEKSLECVPILRELAAAEQALGFHDASINNLIQAHLIVLRGSPSREEAATSAHSVACAAIASGRPEHHDVAEQYFQDSMANLKDAEGKETAKFLSIQDDYCHFLQVTGQDEVSEFGPQLTVIYSGNPGDIQRATPILCKP
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6260557..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346292)
location: region:6260557-6346292:1
so has part: feature:6260557-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346292:1:exon

XP_019838856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6260557-6260736:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6346075-6346292:1:exon

TTC23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: TTC23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 23 isoform X1
translation: MQESQETHISNHLDEIVAAVSITPRKKLQNQLLQRALFQPPREKLRLSEEKAKSYASSHEYKKALHELVHCMALTRICYGDSHWKLAEAHVNLAKGYLQLKGMSLQAKQHAEKAKEILTSSVAPPYSDNTDVFKCSVELFHTLGQALLSLQKFKEASKNLTKAEILSKEMLQCGKIIKEEWMEIQARIKLSFAQVYQGQKKSKEALPHYQEALEYTEISRGEKSLECVPILRELAAAEQALGFHDASINNLIQAHLIVLRGSPSREEAATSAHSVACAAIASGRPEHHDVAEQYFQDSMANLKDAEGKETAKFLSIQDDYCHFLQVTGQDEVSEFGPQLTVIYSGNPGDIQRATPILCKP
SIO_010081: TTC23
subclass of: SO_0000673
so part of: TTC23
location: join(6260557..6260736,6274784..6274907,6280298..6280448,6280638..6280763,6313152..6313329,6333121..6333226,6346075..6346292)
location: region:6260557-6346292:1
so has part: feature:6260557-6260736:1:exon
so has part: feature:6274784-6274907:1:exon
so has part: feature:6280298-6280448:1:exon
so has part: feature:6280638-6280763:1:exon
so has part: feature:6313152-6313329:1:exon
so has part: feature:6333121-6333226:1:exon
so has part: feature:6346075-6346292:1:exon

XP_019838857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6260557-6260736:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6274784-6274907:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6280298-6280448:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6280638-6280763:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6313152-6313329:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6333121-6333226:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6346075-6346292:1:exon

SYNM
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: SYNM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6370635..6397778)
location: region:6370635-6397778:-1
so has part: feature:6370635-6397778:-1:exon
subclass of: SO_0000010

109575310
type: Gene
SIO_000068: ncbigene

position:6370635:-1
position: 6370635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6397778:-1
position: 6397778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6370635-6397778:-1:exon

SYNM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SYNM
product: synemin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 84 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 229 samples with support for all annotated introns
transcript id: XM_019983300.1
SIO_010081: SYNM
subclass of: SO_0000673
so part of: SYNM
location: complement(join(6370635..6376876,6379080..6379147,6388876..6389000,6396881..6397778))
location: region:6370635-6397778:-1
so has part: feature:6396881-6397778:-1:exon
so has part: feature:6388876-6389000:-1:exon
so has part: feature:6379080-6379147:-1:exon
so has part: feature:6370635-6376876:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6396881-6397778:-1:exon

position:6396881:-1
position: 6396881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6388876-6389000:-1:exon

position:6388876:-1
position: 6388876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6389000:-1
position: 6389000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6379080-6379147:-1:exon

position:6379080:-1
position: 6379080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6379147:-1
position: 6379147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6370635-6376876:-1:exon

position:6376876:-1
position: 6376876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SYNM
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SYNM
product: synemin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 218 samples with support for all annotated introns
transcript id: XM_019983301.1
SIO_010081: SYNM
subclass of: SO_0000673
so part of: SYNM
location: complement(join(6370635..6373574,6374496..6376876,6379080..6379147,6388876..6389000,6396881..6397776))
location: region:6370635-6397776:-1
so has part: feature:6396881-6397776:-1:exon
so has part: feature:6388876-6389000:-1:exon
so has part: feature:6379080-6379147:-1:exon
so has part: feature:6374496-6376876:-1:exon
so has part: feature:6370635-6373574:-1:exon

position:6397776:-1
position: 6397776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6396881-6397776:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6388876-6389000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6379080-6379147:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6374496-6376876:-1:exon

position:6374496:-1
position: 6374496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6370635-6373574:-1:exon

position:6373574:-1
position: 6373574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SYNM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SYNM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synemin isoform X2
translation: MLSWRLHTGPEKAELQELNARLYDYVCRVRELERENLLLEEELRSRRGQEGLWAEAEARCTEEARGLRRQLDELSWATALAQGERDALRRELRELQLLGEETRAARGRLXAELDSQRRELQEELAARAALEALLGRLQAERRGLDAARERDVRELRARAAGLTLRYLGRVAGPAAPPLRLRELHEDCALLVTEAWRETVQRYEDEVRELEEALRRGRESRREAEEETRLCAQEAEALRREVLELEQLRALLEEELLRVREASELQAEERQREIAYLEDEKAALTLAMADRLRDYQDLVQVKTGLSLEVATYRALLEGESNPEILIVECIENMPQEFREKSYQYTTSVLQKENERNLFPRQKAPPASFRQSLAPRSQTPVXSDARRDVLGSGYSSFTTAWQENAYQKTASGQTNFRTFSPTPGLLRNTEAQLKTFPERPRTEGTKAPPXSSAKESAAAAEPYQERRAEEAAAASEGTWSNERTVIWGKKTEAKATKEQERNRPGTIQTKREEKMFDSKEKASEERNLRWEELTKLDKEARKRESEQMREKAREKESLKEESVKGREIPIRLEASQDSTAKVAPQXLQTPLKEDAGDGTGRGVETREAGFTLGASDTTASLKGGSMTETIAENIVSSILKQFTHSPEAEASAESFPDTKVTYVDRKEVPGDRKAKTEIVVESKLTEEIDISDEAGLDYLLSKDAKEVELKGKSAERLIGDVIRLGLKGKEGRAKVVNVEIIEEPMSYVSSEKEDEFSTPFEVEEIDDVSPSSRGLVEEREEAVYGESDVTCSGDAGQEARRPQESVTHVEEVTEAGDLEGEQSYFVSTPDEHPGAPEREEGSVYGQIHIEEESTIRYSWQDEIVPGSRRRVRRDDVPGEKVVKPVDVPEVPLEGDTASAPWKEQTRSGEFHAKPIVIEKEIKIPHEFHTSIKEGSKEPRHQLVEVIEQLEENLPERMKEELSALTREGQGGPAGVSFDVKKVQSAGSGAVTLVAEVNLSQTVDADQLDLEELSKDEAGEIEKAVESVVRDSLARRRSPGPGSPEAEAGGGFRRWATQELYSSSAGEADAGLASPPGPVSATVEVTSPTGFVHAHVLEDVSQSGGRVQIASPGMWRTEQVSAEGRAAQAVEMDVSNVEATSRWTQEARVLFPAGTEAEAPSVSEPGAWRDASSRNDLAAGVSFQGSAGDRHQAPGERGKEQAEFDKTVQLQRMVDQRSVISDEKKVALLYLDSQEEENEGHWF
SIO_010081: SYNM
subclass of: SO_0000673
so part of: SYNM
location: complement(join(6373236..6373574,6374496..6376876,6379080..6379147,6388876..6389000,6396881..6397690))
location: region:6373236-6397690:-1
so has part: feature:6396881-6397690:-1:exon
so has part: feature:6388876-6389000:-1:exon
so has part: feature:6379080-6379147:-1:exon
so has part: feature:6374496-6376876:-1:exon
so has part: feature:6373236-6373574:-1:exon

XP_019838860.1
type: Protein
SIO_000068: ncbiprotein

position:6373236:-1
position: 6373236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6397690:-1
position: 6397690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6396881-6397690:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6388876-6389000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6379080-6379147:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6374496-6376876:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6373236-6373574:-1:exon

SYNM
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SYNM
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synemin isoform X1
translation: MLSWRLHTGPEKAELQELNARLYDYVCRVRELERENLLLEEELRSRRGQEGLWAEAEARCTEEARGLRRQLDELSWATALAQGERDALRRELRELQLLGEETRAARGRLXAELDSQRRELQEELAARAALEALLGRLQAERRGLDAARERDVRELRARAAGLTLRYLGRVAGPAAPPLRLRELHEDCALLVTEAWRETVQRYEDEVRELEEALRRGRESRREAEEETRLCAQEAEALRREVLELEQLRALLEEELLRVREASELQAEERQREIAYLEDEKAALTLAMADRLRDYQDLVQVKTGLSLEVATYRALLEGESNPEILIVECIENMPQEFREKSYQYTTSVLQKENERNLFPRQKAPPASFRQSLAPRSQTPVXSDARRDVLGSGYSSFTTAWQENAYQKTASGQTNFRTFSPTPGLLRNTEAQLKTFPERPRTEGTKAPPXSSAKESAAAAEPYQERRAEEAAAASEGTWSNERTVIWGKKTEAKATKEQERNRPGTIQTKREEKMFDSKEKASEERNLRWEELTKLDKEARKRESEQMREKAREKESLKEESVKGREIPIRLEASQDSTAKVAPQXLQTPLKEDAGDGTGRGVETREAGFTLGASDTTASLKGGSMTETIAENIVSSILKQFTHSPEAEASAESFPDTKVTYVDRKEVPGDRKAKTEIVVESKLTEEIDISDEAGLDYLLSKDAKEVELKGKSAERLIGDVIRLGLKGKEGRAKVVNVEIIEEPMSYVSSEKEDEFSTPFEVEEIDDVSPSSRGLVEEREEAVYGESDVTCSGDAGQEARRPQESVTHVEEVTEAGDLEGEQSYFVSTPDEHPGAPEREEGSVYGQIHIEEESTIRYSWQDEIVPGSRRRVRRDDVPGEKVVKPVDVPEVPLEGDTASAPWKEQTRSGEFHAKPIVIEKEIKIPHEFHTSIKEGSKEPRHQLVEVIEQLEENLPERMKEELSALTREGQGGPAGVSFDVKKVQSAGSGAVTLVAEVNLSQTVDADQLDLEELSKDEAGEIEKAVESVVRDSLARRRSPGPGSPEAEAGGGFRRWATQELYSSSAGEADAGLASPPGPVSATVEVTSPTGFVHAHVLEDVSQSGGRVQIASPGMWRTEQVSAEGRAAQAVEVSAEGQASWAEGSAGTSRSARLITLGARQSPVSTEVIFPGPDAACPEAGGTEEPGPXELPTEPPRFGRHSPFGSQQFYAQREVIFQAPVSGVGKAGDSSQAEESAGTQTSVKHLQLGTREGLTEQTQLTAPLSGAVELGVREASVLMEAWSGDGTSIRHVTIGPQRHQATEPIVPPPLEFSDSESSTHREGSADETLATSSYTVGXNILVTEKSTFQRAVSESPQEASAEDMSGNEVTSGVSRSFRHIQLGPAEAKTSEHIVFHGPISKTFALAGSVDSPEVSEVADSGRTLRHVALGPKETSFTFQMDVSNVEATSRWTQEARVLFPAGTEAEAPSVSEPGAWRDASSRNDLAAGVSFQGSAGDRHQAPGERGKEQAEFDKTVQLQRMVDQRSVISDEKKVALLYLDSQEEENEGHWF
SIO_010081: SYNM
subclass of: SO_0000673
so part of: SYNM
location: complement(join(6373236..6376876,6379080..6379147,6388876..6389000,6396881..6397690))
location: region:6373236-6397690:-1
so has part: feature:6396881-6397690:-1:exon
so has part: feature:6388876-6389000:-1:exon
so has part: feature:6379080-6379147:-1:exon
so has part: feature:6373236-6376876:-1:exon

XP_019838859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6396881-6397690:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6388876-6389000:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6379080-6379147:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6373236-6376876:-1:exon

LOC109575322
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575322
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6541150..6544108
location: region:6541150-6544108:1
so has part: feature:6541150-6544108:1:exon
subclass of: SO_0000011

109575322
type: Gene
SIO_000068: ncbigene

position:6541150:1
position: 6541150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6544108:1
position: 6544108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6541150-6544108:1:exon

LOC109575322
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575322
product: uncharacterized LOC109575322
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_002183208.1
SIO_010081: LOC109575322
subclass of: SO_0000673
so part of: LOC109575322
location: join(6541150..6541298,6542775..6542842,6543932..6544108)
location: region:6541150-6544108:1
so has part: feature:6541150-6541298:1:exon
so has part: feature:6542775-6542842:1:exon
so has part: feature:6543932-6544108:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6541150-6541298:1:exon

position:6541298:1
position: 6541298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6542775-6542842:1:exon

position:6542775:1
position: 6542775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6542842:1
position: 6542842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6543932-6544108:1:exon

position:6543932:1
position: 6543932
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575127
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575127
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6569315..>6622806
location: region:6569315-6622806:1
so has part: feature:6569315-6622806:1:exon
subclass of: SO_0000010

109575127
type: Gene
SIO_000068: ncbigene

position:6569315:1
position: 6569315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6622806:1
position: 6622806
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6569315-6622806:1:exon

LOC109575127
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575127
product: insulin-like growth factor 1 receptor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_019983176.1
SIO_010081: LOC109575127
subclass of: SO_0000673
so part of: LOC109575127
location: join(6569315..6569447,6622316..>6622806)
location: region:6569315-6622806:1
so has part: feature:6569315-6569447:1:exon
so has part: feature:6622316-6622806:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6569315-6569447:1:exon

position:6569447:1
position: 6569447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6622316-6622806:1:exon

position:6622316:1
position: 6622316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575127
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575127
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: insulin-like growth factor 1 receptor
translation: MKSSSGGGSPTSLWGLLFFSAALSLWPTSGEICGPGIDIRNDYQQLKRLENCTVIEGYLHILLISKAEDYRSYRFPKLTVITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFYNYALVIFEMTNLKDIGLYNLRNITRGAIRIEKNADLCYLSTVDWSLILDAASNNYIVGNKPPKECGDLCPGTMEEKPLCEKK
SIO_010081: LOC109575127
subclass of: SO_0000673
so part of: LOC109575127
location: join(6569354..6569447,6622316..>6622806)
location: region:6569354-6622806:1
so has part: feature:6569354-6569447:1:exon
so has part: feature:6622316-6622806:1:exon

XP_019838735.1
type: Protein
SIO_000068: ncbiprotein

position:6569354:1
position: 6569354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6569354-6569447:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6622316-6622806:1:exon

LOC109575129
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575129
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6809839..6870118
location: region:6809839-6870118:1
so has part: feature:6809839-6870118:1:exon
subclass of: SO_0000010

109575129
type: Gene
SIO_000068: ncbigene

position:6809839:1
position: 6809839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6870118:1
position: 6870118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6809839-6870118:1:exon

LOC109575129
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575129
product: insulin-like growth factor 1 receptor
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 14 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 143 samples with support for all annotated introns
transcript id: XM_019983177.1
SIO_010081: LOC109575129
subclass of: SO_0000673
so part of: LOC109575129
location: join(6809839..6810302,6814273..6814421,6817614..6817758,6825958..6826172,6828069..6828195,6829716..6829954,6832574..6832741,6832872..6833076,6836415..6836698,6837962..6838098,6838578..6838737,6842695..6842797,6843295..6843365,6847497..6847726,6847981..6848091,6851860..6852019,6855004..6855133,6860441..6860575,6868875..6870118)
location: region:6809839-6870118:1
so has part: feature:6809839-6810302:1:exon
so has part: feature:6814273-6814421:1:exon
so has part: feature:6817614-6817758:1:exon
so has part: feature:6825958-6826172:1:exon
so has part: feature:6828069-6828195:1:exon
so has part: feature:6829716-6829954:1:exon
so has part: feature:6832574-6832741:1:exon
so has part: feature:6832872-6833076:1:exon
so has part: feature:6836415-6836698:1:exon
so has part: feature:6837962-6838098:1:exon
so has part: feature:6838578-6838737:1:exon
so has part: feature:6842695-6842797:1:exon
so has part: feature:6843295-6843365:1:exon
so has part: feature:6847497-6847726:1:exon
so has part: feature:6847981-6848091:1:exon
so has part: feature:6851860-6852019:1:exon
so has part: feature:6855004-6855133:1:exon
so has part: feature:6860441-6860575:1:exon
so has part: feature:6868875-6870118:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6809839-6810302:1:exon

position:6810302:1
position: 6810302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6814273-6814421:1:exon

position:6814273:1
position: 6814273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6814421:1
position: 6814421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6817614-6817758:1:exon

position:6817614:1
position: 6817614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6817758:1
position: 6817758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6825958-6826172:1:exon

position:6825958:1
position: 6825958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6826172:1
position: 6826172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6828069-6828195:1:exon

position:6828069:1
position: 6828069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6828195:1
position: 6828195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6829716-6829954:1:exon

position:6829716:1
position: 6829716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6829954:1
position: 6829954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6832574-6832741:1:exon

position:6832574:1
position: 6832574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6832741:1
position: 6832741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6832872-6833076:1:exon

position:6832872:1
position: 6832872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6833076:1
position: 6833076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6836415-6836698:1:exon

position:6836415:1
position: 6836415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6836698:1
position: 6836698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6837962-6838098:1:exon

position:6837962:1
position: 6837962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6838098:1
position: 6838098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6838578-6838737:1:exon

position:6838578:1
position: 6838578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6838737:1
position: 6838737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6842695-6842797:1:exon

position:6842695:1
position: 6842695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6842797:1
position: 6842797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6843295-6843365:1:exon

position:6843295:1
position: 6843295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6843365:1
position: 6843365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6847497-6847726:1:exon

position:6847497:1
position: 6847497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6847726:1
position: 6847726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6847981-6848091:1:exon

position:6847981:1
position: 6847981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6848091:1
position: 6848091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6851860-6852019:1:exon

position:6851860:1
position: 6851860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6852019:1
position: 6852019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6855004-6855133:1:exon

position:6855004:1
position: 6855004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6855133:1
position: 6855133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6860441-6860575:1:exon

position:6860441:1
position: 6860441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6860575:1
position: 6860575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6868875-6870118:1:exon

position:6868875:1
position: 6868875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575129
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575129
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: insulin-like growth factor 1 receptor
translation: MQSTCSLPQRNSQHVTLXIQALGPRRVAGGLGVPGGGPSAQRPHTLPVPTVCPSACGKRACTETHECCHPECLGSCSAPDNATACVACRHYYYAGVCVPSCPPNTYRFEGWRCVDRDFCANIPNAESSDSEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIEVVTGYVKIRHSHALVSLSFLKNLRQILGEEQLEGNYSFYVLDNQNLQQLWDWDHRNLTIKAGKMYFAFNPKLCVSEIYRMEEVTGTKGRQSKGDINTRNNGERASCESDVLHFTSTTTSKNRIIITWHRYRPPDYRDLISFTVYYKEAPFKNVTEYDGQDACGSNSWNMVDVDLPPNKDVEPGILLHGLKPWTQYAVYVKAVTLTMVENDHIRGAKSEILYIRTNASVPSIPLDVLSASNSSSQLIVKWNPPSLPNGNLSYYIVRWQRQPQDSYLYRHNYCSKDKIPIRKYADGTIXVEEVTENPKTEVCGGEKGPCCACPKTEAEKQAEKEEAEYRKVFENFLHNAIFVPRPERKRREVMQIANTTMSSRSRNTTVLDTYNITDPEELETEYPFFESRVDNKERTVISNLRPFTLYRIDIHSCNHEAEKLGCSASNFVFARTMPAEGADDIPGPVTWEPRPENSIFLKWPEPENPNGLILMYEIKYGSQVEDQRECVSRQEYRKYGGAKLNRLNPGNYTARIQATSLSGNGSWTDPVFFYVQAKTTYENFIHLMIALPIAVLLIVGGLVIMLYVFHRKRNSSRLGNGVLYASVNPEYFSAADVYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTHSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSVKDEMEAGFREVSFYYSEENKPPEPEELDLEPENMESVPLDPSASSASLPLPDRHSGHKAENGPGPGVLVLRASFDERQPYAHMNGGRKNERALPLPQSSTC
SIO_010081: LOC109575129
subclass of: SO_0000673
so part of: LOC109575129
location: join(6809839..6810302,6814273..6814421,6817614..6817758,6825958..6826172,6828069..6828195,6829716..6829954,6832574..6832741,6832872..6833076,6836415..6836698,6837962..6838098,6838578..6838737,6842695..6842797,6843295..6843365,6847497..6847726,6847981..6848091,6851860..6852019,6855004..6855133,6860441..6860575,6868875..6869256)
location: region:6809839-6869256:1
so has part: feature:6809839-6810302:1:exon
so has part: feature:6814273-6814421:1:exon
so has part: feature:6817614-6817758:1:exon
so has part: feature:6825958-6826172:1:exon
so has part: feature:6828069-6828195:1:exon
so has part: feature:6829716-6829954:1:exon
so has part: feature:6832574-6832741:1:exon
so has part: feature:6832872-6833076:1:exon
so has part: feature:6836415-6836698:1:exon
so has part: feature:6837962-6838098:1:exon
so has part: feature:6838578-6838737:1:exon
so has part: feature:6842695-6842797:1:exon
so has part: feature:6843295-6843365:1:exon
so has part: feature:6847497-6847726:1:exon
so has part: feature:6847981-6848091:1:exon
so has part: feature:6851860-6852019:1:exon
so has part: feature:6855004-6855133:1:exon
so has part: feature:6860441-6860575:1:exon
so has part: feature:6868875-6869256:1:exon

XP_019838736.1
type: Protein
SIO_000068: ncbiprotein

position:6869256:1
position: 6869256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6809839-6810302:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6814273-6814421:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6817614-6817758:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6825958-6826172:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6828069-6828195:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6829716-6829954:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6832574-6832741:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6832872-6833076:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6836415-6836698:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6837962-6838098:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6838578-6838737:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6842695-6842797:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6843295-6843365:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6847497-6847726:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6847981-6848091:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6851860-6852019:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6855004-6855133:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6860441-6860575:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6868875-6869256:1:exon

PGPEP1L
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: PGPEP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6879635..6951302)
location: region:6879635-6951302:-1
so has part: feature:6879635-6951302:-1:exon
subclass of: SO_0000010

109575371
type: Gene
SIO_000068: ncbigene

position:6879635:-1
position: 6879635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6951302:-1
position: 6951302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6879635-6951302:-1:exon

PGPEP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: PGPEP1L
product: pyroglutamyl-peptidase I-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 104 samples with support for all annotated introns
transcript id: XM_019983401.1
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879635..6880117,6891933..6892085,6893099..6893221,6944876..6944928,6951000..6951302))
location: region:6879635-6951302:-1
so has part: feature:6951000-6951302:-1:exon
so has part: feature:6944876-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891933-6892085:-1:exon
so has part: feature:6879635-6880117:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951302:-1:exon

position:6951000:-1
position: 6951000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6944876-6944928:-1:exon

position:6944876:-1
position: 6944876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6944928:-1
position: 6944928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

position:6893099:-1
position: 6893099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6893221:-1
position: 6893221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6891933-6892085:-1:exon

position:6891933:-1
position: 6891933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6892085:-1
position: 6892085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6879635-6880117:-1:exon

position:6880117:-1
position: 6880117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PGPEP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: PGPEP1L
product: pyroglutamyl-peptidase I-like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_019983404.1
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879636..6880117,6891933..6892085,6893099..6893221,6944702..6944928,6951000..6951045))
location: region:6879636-6951045:-1
so has part: feature:6951000-6951045:-1:exon
so has part: feature:6944702-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891933-6892085:-1:exon
so has part: feature:6879636-6880117:-1:exon

position:6879636:-1
position: 6879636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6951045:-1
position: 6951045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951045:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6944702-6944928:-1:exon

position:6944702:-1
position: 6944702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6891933-6892085:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6879636-6880117:-1:exon

PGPEP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: PGPEP1L
product: pyroglutamyl-peptidase I-like, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
transcript id: XM_019983405.1
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879637..6880117,6891933..6892085,6893099..6893221,6951000..6951302))
location: region:6879637-6951302:-1
so has part: feature:6951000-6951302:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891933-6892085:-1:exon
so has part: feature:6879637-6880117:-1:exon

position:6879637:-1
position: 6879637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951302:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6891933-6892085:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6879637-6880117:-1:exon

PGPEP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: PGPEP1L
product: pyroglutamyl-peptidase I-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns
transcript id: XM_019983402.1
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879644..6880117,6891863..6892085,6893099..6893221,6944876..6944928,6951000..6951302))
location: region:6879644-6951302:-1
so has part: feature:6951000-6951302:-1:exon
so has part: feature:6944876-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891863-6892085:-1:exon
so has part: feature:6879644-6880117:-1:exon

position:6879644:-1
position: 6879644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951302:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6944876-6944928:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6891863-6892085:-1:exon

position:6891863:-1
position: 6891863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6879644-6880117:-1:exon

PGPEP1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: PGPEP1L
product: pyroglutamyl-peptidase I-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
transcript id: XM_019983403.1
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879644..6880117,6891859..6892085,6893099..6893221,6944876..6944928,6951000..6951301))
location: region:6879644-6951301:-1
so has part: feature:6951000-6951301:-1:exon
so has part: feature:6944876-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891859-6892085:-1:exon
so has part: feature:6879644-6880117:-1:exon

position:6951301:-1
position: 6951301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951301:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6944876-6944928:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6891859-6892085:-1:exon

position:6891859:-1
position: 6891859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6879644-6880117:-1:exon

PGPEP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: PGPEP1L
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(6879965..6879967),aa:OTHER)
product: LOW QUALITY PROTEIN: pyroglutamyl-peptidase 1-like protein isoform X1
translation: MDSRSSCVVVTGFGPFRQHLVNSSWEAVKELSKLGLGNDMEVELQTLQLPVDYREVKQRVARIWEALQPQLVVHVGVDPAAKAIFLEQCSKNRGYRDADIRGFRPECGVCLPDGPEVIASEVCLRLRLLPVFASWKXVRGPHPRPSIISLAARQPAGESPASPHPGNAGGDXESPGSKPEAQXLQFQPGRINWXTAPLEKIKCFTPVCXVKLCFEGLXKKLLIKQFTQRKNVLNSLNEITKGYFIVRRKKXTLKGRXFIRD
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879695..6880117,6891933..6892085,6893099..6893221,6944876..6944928,6951000..6951033))
location: region:6879695-6951033:-1
so has part: feature:6951000-6951033:-1:exon
so has part: feature:6944876-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891933-6892085:-1:exon
so has part: feature:6879695-6880117:-1:exon

XP_019838960.1
type: Protein
SIO_000068: ncbiprotein

position:6879695:-1
position: 6879695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6951033:-1
position: 6951033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6944876-6944928:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6891933-6892085:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6879695-6880117:-1:exon

PGPEP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: PGPEP1L
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(6879965..6879967),aa:OTHER)
product: LOW QUALITY PROTEIN: pyroglutamyl-peptidase 1-like protein isoform X4
translation: MEVELQTLQLPVDYREVKQRVARIWEALQPQLVVHVGVDPAAKAIFLEQCSKNRGYRDADIRGFRPECGVCLPDGPEVIASEVCLRLRLLPVFASWKXVRGPHPRPSIISLAARQPAGESPASPHPGNAGGDXESPGSKPEAQXLQFQPGRINWXTAPLEKIKCFTPVCXVKLCFEGLXKKLLIKQFTQRKNVLNSLNEITKGYFIVRRKKXTLKGRXFIRD
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879695..6880117,6891933..6892085,6893099..6893191))
location: region:6879695-6893191:-1
so has part: feature:6893099-6893191:-1:exon
so has part: feature:6891933-6892085:-1:exon
so has part: feature:6879695-6880117:-1:exon

XP_019838963.1
type: Protein
SIO_000068: ncbiprotein

position:6893191:-1
position: 6893191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6893099-6893191:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6891933-6892085:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6879695-6880117:-1:exon

PGPEP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: PGPEP1L
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(6879965..6879967),aa:OTHER)
product: LOW QUALITY PROTEIN: pyroglutamyl-peptidase 1-like protein isoform X4
translation: MEVELQTLQLPVDYREVKQRVARIWEALQPQLVVHVGVDPAAKAIFLEQCSKNRGYRDADIRGFRPECGVCLPDGPEVIASEVCLRLRLLPVFASWKXVRGPHPRPSIISLAARQPAGESPASPHPGNAGGDXESPGSKPEAQXLQFQPGRINWXTAPLEKIKCFTPVCXVKLCFEGLXKKLLIKQFTQRKNVLNSLNEITKGYFIVRRKKXTLKGRXFIRD
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879695..6880117,6891933..6892085,6893099..6893191))
location: region:6879695-6893191:-1
so has part: feature:6893099-6893191:-1:exon
so has part: feature:6891933-6892085:-1:exon
so has part: feature:6879695-6880117:-1:exon

XP_019838964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6893099-6893191:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6891933-6892085:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6879695-6880117:-1:exon

PGPEP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: PGPEP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyroglutamyl-peptidase 1-like protein isoform X2
translation: MDSRSSCVVVTGFGPFRQHLVNSSWEAVKELSKLGLGNDMEVELQTLQLPVDYREVKQRVARIWEALQPQLVVHVGVDPAAKAIFLEQCSKNRGYRDADIRGFRPECGVCLPDGPEVIASEVSMKAVSRRAAVQGVEVAFSRDAGMSAITPTTCLCIMEXGARPSSTSLHYLLGCPPACWGKPCKSSSRKCWRRLRKPGLKTRSSAFAVPARENQLGDCSFREN
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879876..6880117,6891863..6892085,6893099..6893221,6944876..6944928,6951000..6951033))
location: region:6879876-6951033:-1
so has part: feature:6951000-6951033:-1:exon
so has part: feature:6944876-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891863-6892085:-1:exon
so has part: feature:6879876-6880117:-1:exon

XP_019838961.1
type: Protein
SIO_000068: ncbiprotein

position:6879876:-1
position: 6879876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6944876-6944928:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6891863-6892085:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6879876-6880117:-1:exon

PGPEP1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: PGPEP1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pyroglutamyl-peptidase 1-like protein isoform X3
translation: MDSRSSCVVVTGFGPFRQHLVNSSWEAVKELSKLGLGNDMEVELQTLQLPVDYREVKQRVARIWEALQPQLVVHVGVDPAAKAIFLEQCSKNRGYRDADIRGFRPECGVCLPDGPEVIASEVSMKAVSRRAAVQGVEVAFSRDAGRYVCDYAYYLSLHHGNGCAALIHVPPLSPWLPASLLGKALQVLIQEMLEEIXKARAQNQKLSXCSSSQGESTGXLLL
SIO_010081: PGPEP1L
subclass of: SO_0000673
so part of: PGPEP1L
location: complement(join(6879886..6880117,6891859..6892085,6893099..6893221,6944876..6944928,6951000..6951033))
location: region:6879886-6951033:-1
so has part: feature:6951000-6951033:-1:exon
so has part: feature:6944876-6944928:-1:exon
so has part: feature:6893099-6893221:-1:exon
so has part: feature:6891859-6892085:-1:exon
so has part: feature:6879886-6880117:-1:exon

XP_019838962.1
type: Protein
SIO_000068: ncbiprotein

position:6879886:-1
position: 6879886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6951000-6951033:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6944876-6944928:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6893099-6893221:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6891859-6892085:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6879886-6880117:-1:exon

FAM169B
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: FAM169B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6974881..7058991
location: region:6974881-7058991:1
so has part: feature:6974881-7058991:1:exon
subclass of: SO_0000010

109575130
type: Gene
SIO_000068: ncbigene

position:6974881:1
position: 6974881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7058991:1
position: 7058991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6974881-7058991:1:exon

FAM169B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: FAM169B
product: family with sequence similarity 169 member B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 85% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983178.1
SIO_010081: FAM169B
subclass of: SO_0000673
so part of: FAM169B
location: join(6974881..6974935,6977925..6978058,6981268..6981367,7003855..7003940,7009952..7010129,7045573..7045755,7047828..7047962,7052017..7052111,7058926..7058991)
location: region:6974881-7058991:1
so has part: feature:6974881-6974935:1:exon
so has part: feature:6977925-6978058:1:exon
so has part: feature:6981268-6981367:1:exon
so has part: feature:7003855-7003940:1:exon
so has part: feature:7009952-7010129:1:exon
so has part: feature:7045573-7045755:1:exon
so has part: feature:7047828-7047962:1:exon
so has part: feature:7052017-7052111:1:exon
so has part: feature:7058926-7058991:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6974881-6974935:1:exon

position:6974935:1
position: 6974935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6977925-6978058:1:exon

position:6977925:1
position: 6977925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6978058:1
position: 6978058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6981268-6981367:1:exon

position:6981268:1
position: 6981268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6981367:1
position: 6981367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7003855-7003940:1:exon

position:7003855:1
position: 7003855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7003940:1
position: 7003940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7009952-7010129:1:exon

position:7009952:1
position: 7009952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7010129:1
position: 7010129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7045573-7045755:1:exon

position:7045573:1
position: 7045573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7045755:1
position: 7045755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7047828-7047962:1:exon

position:7047828:1
position: 7047828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7047962:1
position: 7047962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7052017-7052111:1:exon

position:7052017:1
position: 7052017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7052111:1
position: 7052111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:7058926-7058991:1:exon

position:7058926:1
position: 7058926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FAM169B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: FAM169B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein FAM169B
translation: MAATLLWVLRCLDIPLLDAGIYPVDILEDDPAGHQEATLAYYAMLEEGAGPSPEVFSLPTGEQVKLEASSVCFCTVHRDEPQHKILVLVNPQDTKTVVAVYVKQSWWATEDVLRTSNPSREGLMKVQSFGERIVLFILNVVIFGRLERNLDDDDMFFLPHSVKEEAKILWRDGAAVGFYTTKRKGSLCGDSTGTCYLLPVFDTVFVRRRHHRRGLGLTMLQDFCQTFREDEALGVSWPISPAMYQVCRKFLAAHPAERGRLWEVEPPGAWGQRDNIWLKVQLQQSRLHLDSHPGHSKEAVATRGQTSQDDGPGLSHNGEDHKGTEYRHSHAGEGEPGHVDTVT
SIO_010081: FAM169B
subclass of: SO_0000673
so part of: FAM169B
location: join(6974881..6974935,6977925..6978058,6981268..6981367,7003855..7003940,7009952..7010129,7045573..7045755,7047828..7047962,7052017..7052111,7058926..7058991)
location: region:6974881-7058991:1
so has part: feature:6974881-6974935:1:exon
so has part: feature:6977925-6978058:1:exon
so has part: feature:6981268-6981367:1:exon
so has part: feature:7003855-7003940:1:exon
so has part: feature:7009952-7010129:1:exon
so has part: feature:7045573-7045755:1:exon
so has part: feature:7047828-7047962:1:exon
so has part: feature:7052017-7052111:1:exon
so has part: feature:7058926-7058991:1:exon

XP_019838737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6974881-6974935:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6977925-6978058:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6981268-6981367:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7003855-7003940:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7009952-7010129:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7045573-7045755:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7047828-7047962:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7052017-7052111:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7058926-7058991:1:exon

ARRDC4
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: ARRDC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7522027..7536478)
location: region:7522027-7536478:-1
so has part: feature:7522027-7536478:-1:exon
subclass of: SO_0000010

109575454
type: Gene
SIO_000068: ncbigene

position:7522027:-1
position: 7522027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7536478:-1
position: 7536478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7522027-7536478:-1:exon

ARRDC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ARRDC4
product: arrestin domain containing 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 30 ESTs, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 237 samples with support for all annotated introns
transcript id: XM_019983593.1
SIO_010081: ARRDC4
subclass of: SO_0000673
so part of: ARRDC4
location: complement(join(7522027..7524785,7525163..7525317,7526178..7526340,7526827..7527083,7528038..7528140,7530067..7530214,7530936..7531002,7536075..7536478))
location: region:7522027-7536478:-1
so has part: feature:7536075-7536478:-1:exon
so has part: feature:7530936-7531002:-1:exon
so has part: feature:7530067-7530214:-1:exon
so has part: feature:7528038-7528140:-1:exon
so has part: feature:7526827-7527083:-1:exon
so has part: feature:7526178-7526340:-1:exon
so has part: feature:7525163-7525317:-1:exon
so has part: feature:7522027-7524785:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7536075-7536478:-1:exon

position:7536075:-1
position: 7536075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7530936-7531002:-1:exon

position:7530936:-1
position: 7530936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7531002:-1
position: 7531002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7530067-7530214:-1:exon

position:7530067:-1
position: 7530067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7530214:-1
position: 7530214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7528038-7528140:-1:exon

position:7528038:-1
position: 7528038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7528140:-1
position: 7528140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7526827-7527083:-1:exon

position:7526827:-1
position: 7526827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7527083:-1
position: 7527083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7526178-7526340:-1:exon

position:7526178:-1
position: 7526178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7526340:-1
position: 7526340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7525163-7525317:-1:exon

position:7525163:-1
position: 7525163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7525317:-1
position: 7525317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7522027-7524785:-1:exon

position:7524785:-1
position: 7524785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARRDC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ARRDC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: arrestin domain-containing protein 4
translation: MGGEAGSAAAAAGSEGRVKSLGLVFEDERKGCYSSGETVAGHVLLEAAEPVALRALRLEAQGRATASWGSSAGAAAPAAASEVEYLNVCLSLREPPAGEGILLLQPGKHEFPFSFQLPSEPLVTSFTGKYGSIQYCVRAILERPQAPDQSVKRELQVVSHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSLSAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTVRLMVANVRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVHYSLAVYIHIPGAKKLMLELPLVIGTVPYNGFGSRNSSVASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSQHVPPYPQPPNCEGESCCPMFACIQEFRFQPPPLYSEVDPHPSDVEETQPVSFIL
SIO_010081: ARRDC4
subclass of: SO_0000673
so part of: ARRDC4
location: complement(join(7524729..7524785,7525163..7525317,7526178..7526340,7526827..7527083,7528038..7528140,7530067..7530214,7530936..7531002,7536075..7536366))
location: region:7524729-7536366:-1
so has part: feature:7536075-7536366:-1:exon
so has part: feature:7530936-7531002:-1:exon
so has part: feature:7530067-7530214:-1:exon
so has part: feature:7528038-7528140:-1:exon
so has part: feature:7526827-7527083:-1:exon
so has part: feature:7526178-7526340:-1:exon
so has part: feature:7525163-7525317:-1:exon
so has part: feature:7524729-7524785:-1:exon

XP_019839152.1
type: Protein
SIO_000068: ncbiprotein

position:7524729:-1
position: 7524729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7536366:-1
position: 7536366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7536075-7536366:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7530936-7531002:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7530067-7530214:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7528038-7528140:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7526827-7527083:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7526178-7526340:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7525163-7525317:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7524729-7524785:-1:exon

LOC109575131
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575131
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7860349..7975241
location: region:7860349-7975241:1
so has part: feature:7860349-7975241:1:exon

109575131
type: Gene
SIO_000068: ncbigene

position:7860349:1
position: 7860349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7975241:1
position: 7975241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7860349-7975241:1:exon

LOC109575131
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575131
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
pseudo: true
SIO_010081: LOC109575131
subclass of: SO_0000673
so part of: LOC109575131
location: 7860349..7860525
location: region:7860349-7860525:1
so has part: feature:7860349-7860525:1:exon

position:7860525:1
position: 7860525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7860349-7860525:1:exon

LOC109575131
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575131
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
pseudo: true
SIO_010081: LOC109575131
subclass of: SO_0000673
so part of: LOC109575131
location: 7974626..7975241
location: region:7974626-7975241:1
so has part: feature:7974626-7975241:1:exon

position:7974626:1
position: 7974626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7974626-7975241:1:exon

LOC109575268
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575268
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 8617068..8619816
location: region:8617068-8619816:1
so has part: feature:8617068-8619816:1:exon

109575268
type: Gene
SIO_000068: ncbigene

position:8617068:1
position: 8617068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8619816:1
position: 8619816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8617068-8619816:1:exon

LOC109575268
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575268
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 1 Protein, and 84% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575268
subclass of: SO_0000673
so part of: LOC109575268
location: 8617068..8619816
location: region:8617068-8619816:1
so has part: feature:8617068-8619816:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8617068-8619816:1:exon

LOC109575641
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575641
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9456501..9494152)
location: region:9456501-9494152:-1
so has part: feature:9456501-9494152:-1:exon
subclass of: SO_0000011

109575641
type: Gene
SIO_000068: ncbigene

position:9456501:-1
position: 9456501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9494152:-1
position: 9494152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9456501-9494152:-1:exon

LOC109575641
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575641
product: uncharacterized LOC109575641, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XR_002183266.1
SIO_010081: LOC109575641
subclass of: SO_0000673
so part of: LOC109575641
location: complement(join(9456501..9457034,9457452..9457597,9494031..9494152))
location: region:9456501-9494152:-1
so has part: feature:9494031-9494152:-1:exon
so has part: feature:9457452-9457597:-1:exon
so has part: feature:9456501-9457034:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9494031-9494152:-1:exon

position:9494031:-1
position: 9494031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9457452-9457597:-1:exon

position:9457452:-1
position: 9457452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9457597:-1
position: 9457597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9456501-9457034:-1:exon

position:9457034:-1
position: 9457034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109575641
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575641
product: uncharacterized LOC109575641, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
transcript id: XR_002183265.1
SIO_010081: LOC109575641
subclass of: SO_0000673
so part of: LOC109575641
location: complement(join(9456501..9457034,9457452..9457601,9494031..9494152))
location: region:9456501-9494152:-1
so has part: feature:9494031-9494152:-1:exon
so has part: feature:9457452-9457601:-1:exon
so has part: feature:9456501-9457034:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9494031-9494152:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9457452-9457601:-1:exon

position:9457601:-1
position: 9457601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9456501-9457034:-1:exon

NR2F2
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: NR2F2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9509421..9517015)
location: region:9509421-9517015:-1
so has part: feature:9509421-9517015:-1:exon
subclass of: SO_0000010

109575489
type: Gene
SIO_000068: ncbigene

position:9509421:-1
position: 9509421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9517015:-1
position: 9517015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9509421-9517015:-1:exon

NR2F2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: NR2F2
product: nuclear receptor subfamily 2 group F member 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 mRNAs, 78 ESTs, 38 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 262 samples with support for all annotated introns
transcript id: XM_019983660.1
SIO_010081: NR2F2
subclass of: SO_0000673
so part of: NR2F2
location: complement(join(9509421..9510915,9513638..9514165,9515774..9517015))
location: region:9509421-9517015:-1
so has part: feature:9515774-9517015:-1:exon
so has part: feature:9513638-9514165:-1:exon
so has part: feature:9509421-9510915:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9515774-9517015:-1:exon

position:9515774:-1
position: 9515774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9513638-9514165:-1:exon

position:9513638:-1
position: 9513638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9514165:-1
position: 9514165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9509421-9510915:-1:exon

position:9510915:-1
position: 9510915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NR2F2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: NR2F2
product: nuclear receptor subfamily 2 group F member 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 66 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_019983661.1
SIO_010081: NR2F2
subclass of: SO_0000673
so part of: NR2F2
location: complement(join(9509421..9510915,9513638..9514165,9515700..9515751))
location: region:9509421-9515751:-1
so has part: feature:9515700-9515751:-1:exon
so has part: feature:9513638-9514165:-1:exon
so has part: feature:9509421-9510915:-1:exon

position:9515751:-1
position: 9515751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9515700-9515751:-1:exon

position:9515700:-1
position: 9515700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9513638-9514165:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9509421-9510915:-1:exon

NR2F2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: NR2F2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: COUP transcription factor 2 isoform X1
translation: MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPSHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
SIO_010081: NR2F2
subclass of: SO_0000673
so part of: NR2F2
location: complement(join(9510641..9510915,9513638..9514165,9515774..9516215))
location: region:9510641-9516215:-1
so has part: feature:9515774-9516215:-1:exon
so has part: feature:9513638-9514165:-1:exon
so has part: feature:9510641-9510915:-1:exon

XP_019839219.1
type: Protein
SIO_000068: ncbiprotein

position:9510641:-1
position: 9510641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9516215:-1
position: 9516215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9515774-9516215:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9513638-9514165:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9510641-9510915:-1:exon

NR2F2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: NR2F2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: COUP transcription factor 2 isoform X2
translation: MPPTQPSHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
SIO_010081: NR2F2
subclass of: SO_0000673
so part of: NR2F2
location: complement(join(9510641..9510915,9513638..9514148))
location: region:9510641-9514148:-1
so has part: feature:9513638-9514148:-1:exon
so has part: feature:9510641-9510915:-1:exon

XP_019839220.1
type: Protein
SIO_000068: ncbiprotein

position:9514148:-1
position: 9514148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9513638-9514148:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9510641-9510915:-1:exon

LOC109575682
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 9561909..9601296
location: region:9561909-9601296:1
so has part: feature:9561909-9601296:1:exon
subclass of: SO_0000010

109575682
type: Gene
SIO_000068: ncbigene

position:9561909:1
position: 9561909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9601296:1
position: 9601296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9561909-9601296:1:exon

LOC109575682
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575682
product: uncharacterized LOC109575682
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_019983958.1
SIO_010081: LOC109575682
subclass of: SO_0000673
so part of: LOC109575682
location: join(9561909..9562615,9565145..9565192,9565311..9565385,9567498..9567617,9597407..9601296)
location: region:9561909-9601296:1
so has part: feature:9561909-9562615:1:exon
so has part: feature:9565145-9565192:1:exon
so has part: feature:9565311-9565385:1:exon
so has part: feature:9567498-9567617:1:exon
so has part: feature:9597407-9601296:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9561909-9562615:1:exon

position:9562615:1
position: 9562615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9565145-9565192:1:exon

position:9565145:1
position: 9565145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9565192:1
position: 9565192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:9565311-9565385:1:exon

position:9565311:1
position: 9565311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9565385:1
position: 9565385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:9567498-9567617:1:exon

position:9567498:1
position: 9567498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9567617:1
position: 9567617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:9597407-9601296:1:exon

position:9597407:1
position: 9597407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575682
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575682
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC109575682
translation: MVRGHWSDFCRNFPWAVVSTSVTEDCKNTSHCASGQLCNALSQGEIPSSPQLLFGDHSGDTVSASPGQAPDVAAACGPPVLPGEASWDFCSRQARGILAPQPWIEPASHALEDTGLITGPPGKSHQYNFDIFKSFPDFYFSPGFLTTSHSDATLFPSFDMYVNQQQSSTIRLSSLNHFNSNLKVTHVMKKIRGSLQCCDYHSFCSV
SIO_010081: LOC109575682
subclass of: SO_0000673
so part of: LOC109575682
location: join(9562460..9562615,9565145..9565192,9565311..9565385,9567498..9567617,9597407..9597628)
location: region:9562460-9597628:1
so has part: feature:9562460-9562615:1:exon
so has part: feature:9565145-9565192:1:exon
so has part: feature:9565311-9565385:1:exon
so has part: feature:9567498-9567617:1:exon
so has part: feature:9597407-9597628:1:exon

XP_019839517.1
type: Protein
SIO_000068: ncbiprotein

position:9562460:1
position: 9562460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9597628:1
position: 9597628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9562460-9562615:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:9565145-9565192:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:9565311-9565385:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:9567498-9567617:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:9597407-9597628:1:exon

LOC109575766
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575766
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10092698..10112246
location: region:10092698-10112246:1
so has part: feature:10092698-10112246:1:exon
subclass of: SO_0000011

109575766
type: Gene
SIO_000068: ncbigene

position:10092698:1
position: 10092698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10112246:1
position: 10112246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10092698-10112246:1:exon

LOC109575766
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575766
product: uncharacterized LOC109575766, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_002183289.1
SIO_010081: LOC109575766
subclass of: SO_0000673
so part of: LOC109575766
location: join(10092698..10092864,10096361..10096405,10097070..10097282,10102568..10102625,10112192..10112246)
location: region:10092698-10112246:1
so has part: feature:10092698-10092864:1:exon
so has part: feature:10096361-10096405:1:exon
so has part: feature:10097070-10097282:1:exon
so has part: feature:10102568-10102625:1:exon
so has part: feature:10112192-10112246:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10092698-10092864:1:exon

position:10092864:1
position: 10092864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10096361-10096405:1:exon

position:10096361:1
position: 10096361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10096405:1
position: 10096405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10097070-10097282:1:exon

position:10097070:1
position: 10097070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10097282:1
position: 10097282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10102568-10102625:1:exon

position:10102568:1
position: 10102568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10102625:1
position: 10102625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10112192-10112246:1:exon

position:10112192:1
position: 10112192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575766
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575766
product: uncharacterized LOC109575766, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_002183290.1
SIO_010081: LOC109575766
subclass of: SO_0000673
so part of: LOC109575766
location: join(10092698..10092864,10096361..10096405,10097070..10097282,10102568..10102629)
location: region:10092698-10102629:1
so has part: feature:10092698-10092864:1:exon
so has part: feature:10096361-10096405:1:exon
so has part: feature:10097070-10097282:1:exon
so has part: feature:10102568-10102629:1:exon

position:10102629:1
position: 10102629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10092698-10092864:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10096361-10096405:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10097070-10097282:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10102568-10102629:1:exon

LOC109575295
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575295
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 10867738..10879767
location: region:10867738-10879767:1
so has part: feature:10867738-10879767:1:exon
subclass of: SO_0000011

109575295
type: Gene
SIO_000068: ncbigene

position:10867738:1
position: 10867738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10879767:1
position: 10879767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10867738-10879767:1:exon

LOC109575295
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575295
product: uncharacterized LOC109575295, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_002183201.1
SIO_010081: LOC109575295
subclass of: SO_0000673
so part of: LOC109575295
location: join(10867738..10868004,10870051..10870145,10879084..10879767)
location: region:10867738-10879767:1
so has part: feature:10867738-10868004:1:exon
so has part: feature:10870051-10870145:1:exon
so has part: feature:10879084-10879767:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10867738-10868004:1:exon

position:10868004:1
position: 10868004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10870051-10870145:1:exon

position:10870051:1
position: 10870051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10870145:1
position: 10870145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10879084-10879767:1:exon

position:10879084:1
position: 10879084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575295
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575295
product: uncharacterized LOC109575295, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_002183200.1
SIO_010081: LOC109575295
subclass of: SO_0000673
so part of: LOC109575295
location: join(10867738..10868004,10870051..10870145,10878943..10879073)
location: region:10867738-10879073:1
so has part: feature:10867738-10868004:1:exon
so has part: feature:10870051-10870145:1:exon
so has part: feature:10878943-10879073:1:exon

position:10879073:1
position: 10879073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10867738-10868004:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10870051-10870145:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10878943-10879073:1:exon

position:10878943:1
position: 10878943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MCTP2
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: MCTP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(11666538..11809854)
location: region:11666538-11809854:-1
so has part: feature:11666538-11809854:-1:exon
subclass of: SO_0000010

109575694
type: Gene
SIO_000068: ncbigene

position:11666538:-1
position: 11666538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11809854:-1
position: 11809854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11666538-11809854:-1:exon

MCTP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: MCTP2
product: multiple C2 and transmembrane domain containing 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_019983974.1
SIO_010081: MCTP2
subclass of: SO_0000673
so part of: MCTP2
location: complement(join(11666538..11667858,11670022..11670119,11677009..11677118,11690296..11690405,11706836..11706877,11709755..11709877,11752120..11752239,11754627..11754701,11757046..11757147,11776387..11776489,11777837..11777939,11792754..11792847,11795791..11795977,11807279..11807344,11809690..11809854))
location: region:11666538-11809854:-1
so has part: feature:11809690-11809854:-1:exon
so has part: feature:11807279-11807344:-1:exon
so has part: feature:11795791-11795977:-1:exon
so has part: feature:11792754-11792847:-1:exon
so has part: feature:11777837-11777939:-1:exon
so has part: feature:11776387-11776489:-1:exon
so has part: feature:11757046-11757147:-1:exon
so has part: feature:11754627-11754701:-1:exon
so has part: feature:11752120-11752239:-1:exon
so has part: feature:11709755-11709877:-1:exon
so has part: feature:11706836-11706877:-1:exon
so has part: feature:11690296-11690405:-1:exon
so has part: feature:11677009-11677118:-1:exon
so has part: feature:11670022-11670119:-1:exon
so has part: feature:11666538-11667858:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11809690-11809854:-1:exon

position:11809690:-1
position: 11809690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:11807279-11807344:-1:exon

position:11807279:-1
position: 11807279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11807344:-1
position: 11807344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:11795791-11795977:-1:exon

position:11795791:-1
position: 11795791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11795977:-1
position: 11795977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:11792754-11792847:-1:exon

position:11792754:-1
position: 11792754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11792847:-1
position: 11792847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:11777837-11777939:-1:exon

position:11777837:-1
position: 11777837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11777939:-1
position: 11777939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:11776387-11776489:-1:exon

position:11776387:-1
position: 11776387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11776489:-1
position: 11776489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11757046-11757147:-1:exon

position:11757046:-1
position: 11757046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11757147:-1
position: 11757147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11754627-11754701:-1:exon

position:11754627:-1
position: 11754627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11754701:-1
position: 11754701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:11752120-11752239:-1:exon

position:11752120:-1
position: 11752120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11752239:-1
position: 11752239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:11709755-11709877:-1:exon

position:11709755:-1
position: 11709755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11709877:-1
position: 11709877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11706836-11706877:-1:exon

position:11706836:-1
position: 11706836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11706877:-1
position: 11706877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11690296-11690405:-1:exon

position:11690296:-1
position: 11690296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11690405:-1
position: 11690405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:11677009-11677118:-1:exon

position:11677009:-1
position: 11677009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11677118:-1
position: 11677118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:11670022-11670119:-1:exon

position:11670022:-1
position: 11670022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11670119:-1
position: 11670119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:11666538-11667858:-1:exon

position:11667858:-1
position: 11667858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MCTP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: MCTP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: multiple C2 and transmembrane domain-containing protein 2
translation: MGILDIEVWGKDSKKHEERLGTCKVDISALPLKQANCLELPLESCQGTLLMLVTLTPCSGVSVSDLCVCPLADPNERKQIAQRFCLQNSLKDMKDVGILQVKVLKAVDLLAADFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQTNCYVLKNKDLEQAFKGVIYLEMDLIYNPIKASIRTFTPREKRFVEDGRKLSKKILSRDVDRVKRLTMAIWNTIQFLKSCFQWESTLRSTVAFVVFLVAVWNFELYMIPLALLLLFVYNSIGPTRGKVGSIQDSQESPDVDEEDDEDDKESEKKGLIKRIYMVQDIVSTVQNILEELASFGERIKNTFNWTVPFLSFLACLILAVATITLYFIPLRYIILIWGINKFTKKLRNPYAIDNNELLDFLSRVPSDVQKVQYAELKPGXSQSPVRKKRGAL
SIO_010081: MCTP2
subclass of: SO_0000673
so part of: MCTP2
location: complement(join(11667790..11667858,11670022..11670119,11677009..11677118,11690296..11690405,11706836..11706877,11709755..11709877,11752120..11752239,11754627..11754701,11757046..11757147,11776387..11776489,11777837..11777939,11792754..11792847,11795791..11795977,11807279..11807343))
location: region:11667790-11807343:-1
so has part: feature:11807279-11807343:-1:exon
so has part: feature:11795791-11795977:-1:exon
so has part: feature:11792754-11792847:-1:exon
so has part: feature:11777837-11777939:-1:exon
so has part: feature:11776387-11776489:-1:exon
so has part: feature:11757046-11757147:-1:exon
so has part: feature:11754627-11754701:-1:exon
so has part: feature:11752120-11752239:-1:exon
so has part: feature:11709755-11709877:-1:exon
so has part: feature:11706836-11706877:-1:exon
so has part: feature:11690296-11690405:-1:exon
so has part: feature:11677009-11677118:-1:exon
so has part: feature:11670022-11670119:-1:exon
so has part: feature:11667790-11667858:-1:exon

XP_019839533.1
type: Protein
SIO_000068: ncbiprotein

position:11667790:-1
position: 11667790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11807343:-1
position: 11807343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11807279-11807343:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:11795791-11795977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:11792754-11792847:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:11777837-11777939:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:11776387-11776489:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:11757046-11757147:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11754627-11754701:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11752120-11752239:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:11709755-11709877:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:11706836-11706877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11690296-11690405:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11677009-11677118:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:11670022-11670119:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:11667790-11667858:-1:exon

LOC109575262
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575262
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 12123549..12124028
location: region:12123549-12124028:1
so has part: feature:12123549-12124028:1:exon

109575262
type: Gene
SIO_000068: ncbigene

position:12123549:1
position: 12123549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12124028:1
position: 12124028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12123549-12124028:1:exon

LOC109575262
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575262
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575262
subclass of: SO_0000673
so part of: LOC109575262
location: 12123549..12124028
location: region:12123549-12124028:1
so has part: feature:12123549-12124028:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12123549-12124028:1:exon

LOC109575701
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575701
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 13268512..13268972
location: region:13268512-13268972:1
so has part: feature:13268512-13268972:1:exon

109575701
type: Gene
SIO_000068: ncbigene

position:13268512:1
position: 13268512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13268972:1
position: 13268972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13268512-13268972:1:exon

LOC109575701
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575701
product: 60S ribosomal protein L35 pseudogene
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 114 ESTs, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
transcript id: XR_002183273.1
SIO_010081: LOC109575701
so part of: LOC109575701
location: 13268512..13268972
location: region:13268512-13268972:1
so has part: feature:13268512-13268972:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13268512-13268972:1:exon

RGMA
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: RGMA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13292871..13342416
location: region:13292871-13342416:1
so has part: feature:13292871-13342416:1:exon
subclass of: SO_0000010

109575525
type: Gene
SIO_000068: ncbigene

position:13292871:1
position: 13292871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13342416:1
position: 13342416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13292871-13342416:1:exon

RGMA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: RGMA
product: repulsive guidance molecule family member a
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 19 ESTs, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 199 samples with support for all annotated introns
transcript id: XM_019983726.1
SIO_010081: RGMA
subclass of: SO_0000673
so part of: RGMA
location: join(13292871..13292981,13313979..13314094,13331043..13331557,13340066..13342416)
location: region:13292871-13342416:1
so has part: feature:13292871-13292981:1:exon
so has part: feature:13313979-13314094:1:exon
so has part: feature:13331043-13331557:1:exon
so has part: feature:13340066-13342416:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13292871-13292981:1:exon

position:13292981:1
position: 13292981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13313979-13314094:1:exon

position:13313979:1
position: 13313979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13314094:1
position: 13314094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13331043-13331557:1:exon

position:13331043:1
position: 13331043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13331557:1
position: 13331557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:13340066-13342416:1:exon

position:13340066:1
position: 13340066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RGMA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: RGMA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: repulsive guidance molecule A
translation: MQPPRERLVVTGRAGWMGMGRGAGRPALGFWPTLAFLLCSFPAASSSCKILKCNSEFWSATAGSHAPAADDAPEFCAALRTYALCTRRTARTCRGDLAYHSAVHGIEDLMSQHNCSKDGPTSQPHLRTLPPPGDSQERSDSPEICHYEKSFHNRAAAPNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQVTNTPVLPGSAATATSKLTIIFKNFQECVDQKVYQAEMDELPAAFADGSKNGGEKHGANSLKITEKVSGQHVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDRDSQGLYLCLRGCPLNQQIDFQAFRAGAAEGPGAPQPPAASPAPPAPDTFPYETAVAKCKEKLPVEDLYYQACVFDLLTTGDVNFTLAAYYALEDVKMLHSNKDKLHLYARTREPPGRAGAAPGPPPAPWPLLGTLLLLALLPALLGAA
SIO_010081: RGMA
subclass of: SO_0000673
so part of: RGMA
location: join(13292968..13292981,13313979..13314094,13331043..13331557,13340066..13340788)
location: region:13292968-13340788:1
so has part: feature:13292968-13292981:1:exon
so has part: feature:13313979-13314094:1:exon
so has part: feature:13331043-13331557:1:exon
so has part: feature:13340066-13340788:1:exon

XP_019839285.1
type: Protein
SIO_000068: ncbiprotein

position:13292968:1
position: 13292968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13340788:1
position: 13340788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13292968-13292981:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13313979-13314094:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13331043-13331557:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13340066-13340788:1:exon

CHD2
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: CHD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(13354644..13466784)
location: region:13354644-13466784:-1
so has part: feature:13354644-13466784:-1:exon
subclass of: SO_0000010

109575314
type: Gene
SIO_000068: ncbigene

position:13354644:-1
position: 13354644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13466784:-1
position: 13466784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13354644-13466784:-1:exon

CHD2
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: CHD2
product: chromodomain helicase DNA binding protein 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 121 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_002183205.1
SIO_010081: CHD2
so part of: CHD2
location: complement(join(13354644..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13383621..13383734,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13435328..13435432,13441951..13442012,13443619..13443705,13447650..13447881,13462001..13462211))
location: region:13354644-13462211:-1
so has part: feature:13462001-13462211:-1:exon
so has part: feature:13447650-13447881:-1:exon
so has part: feature:13443619-13443705:-1:exon
so has part: feature:13441951-13442012:-1:exon
so has part: feature:13435328-13435432:-1:exon
so has part: feature:13432413-13432553:-1:exon
so has part: feature:13430702-13430835:-1:exon
so has part: feature:13429781-13430006:-1:exon
so has part: feature:13428364-13428464:-1:exon
so has part: feature:13427441-13427485:-1:exon
so has part: feature:13427115-13427293:-1:exon
so has part: feature:13424988-13425112:-1:exon
so has part: feature:13421559-13421775:-1:exon
so has part: feature:13419683-13419772:-1:exon
so has part: feature:13418611-13418801:-1:exon
so has part: feature:13408047-13408235:-1:exon
so has part: feature:13406201-13406363:-1:exon
so has part: feature:13405716-13405868:-1:exon
so has part: feature:13403914-13403985:-1:exon
so has part: feature:13400679-13400828:-1:exon
so has part: feature:13399842-13399990:-1:exon
so has part: feature:13398597-13398693:-1:exon
so has part: feature:13398091-13398183:-1:exon
so has part: feature:13394506-13394676:-1:exon
so has part: feature:13393392-13393567:-1:exon
so has part: feature:13388522-13388563:-1:exon
so has part: feature:13387826-13387965:-1:exon
so has part: feature:13384830-13384968:-1:exon
so has part: feature:13384496-13384646:-1:exon
so has part: feature:13383621-13383734:-1:exon
so has part: feature:13383262-13383384:-1:exon
so has part: feature:13381910-13382038:-1:exon
so has part: feature:13380938-13381078:-1:exon
so has part: feature:13379107-13379241:-1:exon
so has part: feature:13374558-13374736:-1:exon
so has part: feature:13372473-13372572:-1:exon
so has part: feature:13369703-13369916:-1:exon
so has part: feature:13364396-13364642:-1:exon
so has part: feature:13354644-13358117:-1:exon

position:13462211:-1
position: 13462211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462001-13462211:-1:exon

position:13462001:-1
position: 13462001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

position:13447650:-1
position: 13447650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13447881:-1
position: 13447881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
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urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

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urn:…
SIO_000300: 5
SIO_000628: feature:13435328-13435432:-1:exon

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urn:…
SIO_000300: 6
SIO_000628: feature:13432413-13432553:-1:exon

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urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:13429781-13430006:-1:exon

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urn:…
SIO_000300: 9
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urn:…
SIO_000300: 10
SIO_000628: feature:13427441-13427485:-1:exon

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urn:…
SIO_000300: 11
SIO_000628: feature:13427115-13427293:-1:exon

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urn:…
SIO_000300: 12
SIO_000628: feature:13424988-13425112:-1:exon

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urn:…
SIO_000300: 13
SIO_000628: feature:13421559-13421775:-1:exon

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urn:…
SIO_000300: 14
SIO_000628: feature:13419683-13419772:-1:exon

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urn:…
SIO_000300: 15
SIO_000628: feature:13418611-13418801:-1:exon

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urn:…
SIO_000300: 16
SIO_000628: feature:13408047-13408235:-1:exon

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urn:…
SIO_000300: 17
SIO_000628: feature:13406201-13406363:-1:exon

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urn:…
SIO_000300: 18
SIO_000628: feature:13405716-13405868:-1:exon

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urn:…
SIO_000300: 19
SIO_000628: feature:13403914-13403985:-1:exon

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urn:…
SIO_000300: 20
SIO_000628: feature:13400679-13400828:-1:exon

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position:13400828:-1
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urn:…
SIO_000300: 21
SIO_000628: feature:13399842-13399990:-1:exon

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urn:…
SIO_000300: 22
SIO_000628: feature:13398597-13398693:-1:exon

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urn:…
SIO_000300: 23
SIO_000628: feature:13398091-13398183:-1:exon

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urn:…
SIO_000300: 24
SIO_000628: feature:13394506-13394676:-1:exon

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urn:…
SIO_000300: 25
SIO_000628: feature:13393392-13393567:-1:exon

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urn:…
SIO_000300: 26
SIO_000628: feature:13388522-13388563:-1:exon

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urn:…
SIO_000300: 27
SIO_000628: feature:13387826-13387965:-1:exon

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urn:…
SIO_000300: 28
SIO_000628: feature:13384830-13384968:-1:exon

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urn:…
SIO_000300: 29
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urn:…
SIO_000300: 30
SIO_000628: feature:13383621-13383734:-1:exon

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SIO_000300: 31
SIO_000628: feature:13383262-13383384:-1:exon

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SIO_000300: 32
SIO_000628: feature:13381910-13382038:-1:exon

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SIO_000300: 33
SIO_000628: feature:13380938-13381078:-1:exon

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SIO_000300: 34
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SIO_000300: 35
SIO_000628: feature:13374558-13374736:-1:exon

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SIO_000300: 36
SIO_000628: feature:13372473-13372572:-1:exon

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urn:…
SIO_000300: 37
SIO_000628: feature:13369703-13369916:-1:exon

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urn:…
SIO_000300: 38
SIO_000628: feature:13364396-13364642:-1:exon

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urn:…
SIO_000300: 39
SIO_000628: feature:13354644-13358117:-1:exon

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reference: sequence
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CHD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: CHD2
product: chromodomain helicase DNA binding protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 115 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_019983304.1
SIO_010081: CHD2
subclass of: SO_0000673
so part of: CHD2
location: complement(join(13354644..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13435328..13435432,13441951..13442012,13443619..13443705,13447650..13447881,13462001..13462200))
location: region:13354644-13462200:-1
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so has part: feature:13364396-13364642:-1:exon
so has part: feature:13354644-13358117:-1:exon

position:13462200:-1
position: 13462200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462001-13462200:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13435328-13435432:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13400679-13400828:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:13399842-13399990:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:13398597-13398693:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:13398091-13398183:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:13394506-13394676:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:13393392-13393567:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:13388522-13388563:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:13387826-13387965:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:13384830-13384968:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:13384496-13384646:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:13383262-13383384:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:13381910-13382038:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:13380938-13381078:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:13379107-13379241:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:13374558-13374736:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:13372473-13372572:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:13369703-13369916:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:13364396-13364642:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:13354644-13358117:-1:exon

CHD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: CHD2
product: chromodomain helicase DNA binding protein 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 115 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_019983306.1
SIO_010081: CHD2
subclass of: SO_0000673
so part of: CHD2
location: complement(join(13354644..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13441951..13442012,13443619..13443705,13447650..13447881,13462001..13462199))
location: region:13354644-13462199:-1
so has part: feature:13462001-13462199:-1:exon
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so has part: feature:13364396-13364642:-1:exon
so has part: feature:13354644-13358117:-1:exon

position:13462199:-1
position: 13462199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462001-13462199:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13400679-13400828:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13399842-13399990:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:13398597-13398693:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:13398091-13398183:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:13394506-13394676:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:13393392-13393567:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:13388522-13388563:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:13387826-13387965:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:13384830-13384968:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:13384496-13384646:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:13383262-13383384:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:13381910-13382038:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:13380938-13381078:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:13379107-13379241:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:13374558-13374736:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:13372473-13372572:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:13369703-13369916:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:13364396-13364642:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:13354644-13358117:-1:exon

CHD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: CHD2
product: chromodomain helicase DNA binding protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 45 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
transcript id: XM_019983305.1
SIO_010081: CHD2
subclass of: SO_0000673
so part of: CHD2
location: complement(join(13357131..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13435328..13435432,13441951..13442012,13443619..13443705,13447650..13447881,13465697..13465829,13466172..13466784))
location: region:13357131-13466784:-1
so has part: feature:13466172-13466784:-1:exon
so has part: feature:13465697-13465829:-1:exon
so has part: feature:13447650-13447881:-1:exon
so has part: feature:13443619-13443705:-1:exon
so has part: feature:13441951-13442012:-1:exon
so has part: feature:13435328-13435432:-1:exon
so has part: feature:13432413-13432553:-1:exon
so has part: feature:13430702-13430835:-1:exon
so has part: feature:13429781-13430006:-1:exon
so has part: feature:13428364-13428464:-1:exon
so has part: feature:13427441-13427485:-1:exon
so has part: feature:13427115-13427293:-1:exon
so has part: feature:13424988-13425112:-1:exon
so has part: feature:13421559-13421775:-1:exon
so has part: feature:13419683-13419772:-1:exon
so has part: feature:13418611-13418801:-1:exon
so has part: feature:13408047-13408235:-1:exon
so has part: feature:13406201-13406363:-1:exon
so has part: feature:13405716-13405868:-1:exon
so has part: feature:13403914-13403985:-1:exon
so has part: feature:13400679-13400828:-1:exon
so has part: feature:13399842-13399990:-1:exon
so has part: feature:13398597-13398693:-1:exon
so has part: feature:13398091-13398183:-1:exon
so has part: feature:13394506-13394676:-1:exon
so has part: feature:13393392-13393567:-1:exon
so has part: feature:13388522-13388563:-1:exon
so has part: feature:13387826-13387965:-1:exon
so has part: feature:13384830-13384968:-1:exon
so has part: feature:13384496-13384646:-1:exon
so has part: feature:13383262-13383384:-1:exon
so has part: feature:13381910-13382038:-1:exon
so has part: feature:13380938-13381078:-1:exon
so has part: feature:13379107-13379241:-1:exon
so has part: feature:13374558-13374736:-1:exon
so has part: feature:13372473-13372572:-1:exon
so has part: feature:13369703-13369916:-1:exon
so has part: feature:13364396-13364642:-1:exon
so has part: feature:13357131-13358117:-1:exon

position:13357131:-1
position: 13357131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13466172-13466784:-1:exon

position:13466172:-1
position: 13466172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13465697-13465829:-1:exon

position:13465697:-1
position: 13465697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13465829:-1
position: 13465829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13435328-13435432:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:13400679-13400828:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:13399842-13399990:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:13398597-13398693:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:13398091-13398183:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:13394506-13394676:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:13393392-13393567:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:13388522-13388563:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:13387826-13387965:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:13384830-13384968:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:13384496-13384646:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:13383262-13383384:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:13381910-13382038:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:13380938-13381078:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:13379107-13379241:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:13374558-13374736:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:13372473-13372572:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:13369703-13369916:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:13364396-13364642:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:13357131-13358117:-1:exon

CHD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: CHD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromodomain-helicase-DNA-binding protein 2 isoform X2
translation: MMRNKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKRKWELSEDEQEQGSSAESEPEQTVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDEDEDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAVEANGDPSSDFDPEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCHLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELDERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPGKKRGPTIKISGVQVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLSCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKEKQMSSRKDKEGDKERKRSKDKKEKPKGGDAKSSSKSKXSQGPVHITAGSEPVPIGEDEEDDLDQETFSICKERMRPVKKALKQLDKPDKGLSVQEQLEHTRSCLLKIGDRIAECLKAYSDQEHTKLWRRNLWIFVSKFTEFDARKLHKLYKMAHKKRSQEEEEQKKKEDVIGGKKPFRPEASGSSRDSLMSQPHTPHNLHPQKPHLPASHGPQMHGHPRDNYSHPNKRHFSNADRGDWQRERKFNYGGGNSNLPWGSDRHHQYEQHWYKDHHYGDRRHVDAHRSGSYRPNNLSRKRPYDQYSSDRDHRGHRDYYDRHHHDSKRRRSDEFRPQNYHQQDFRRMSDHRPTMGYHGQGPSDHHRSFHTDKLGEYKQPLPPLHPAVSDPRSPPSQKSPHDSKSPLDHRSPLERSLEQKNNPDYNWNVRKT
SIO_010081: CHD2
subclass of: SO_0000673
so part of: CHD2
location: complement(join(13357784..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13435328..13435432,13441951..13442012,13443619..13443705,13447650..13447881,13465697..13465758))
location: region:13357784-13465758:-1
so has part: feature:13465697-13465758:-1:exon
so has part: feature:13447650-13447881:-1:exon
so has part: feature:13443619-13443705:-1:exon
so has part: feature:13441951-13442012:-1:exon
so has part: feature:13435328-13435432:-1:exon
so has part: feature:13432413-13432553:-1:exon
so has part: feature:13430702-13430835:-1:exon
so has part: feature:13429781-13430006:-1:exon
so has part: feature:13428364-13428464:-1:exon
so has part: feature:13427441-13427485:-1:exon
so has part: feature:13427115-13427293:-1:exon
so has part: feature:13424988-13425112:-1:exon
so has part: feature:13421559-13421775:-1:exon
so has part: feature:13419683-13419772:-1:exon
so has part: feature:13418611-13418801:-1:exon
so has part: feature:13408047-13408235:-1:exon
so has part: feature:13406201-13406363:-1:exon
so has part: feature:13405716-13405868:-1:exon
so has part: feature:13403914-13403985:-1:exon
so has part: feature:13400679-13400828:-1:exon
so has part: feature:13399842-13399990:-1:exon
so has part: feature:13398597-13398693:-1:exon
so has part: feature:13398091-13398183:-1:exon
so has part: feature:13394506-13394676:-1:exon
so has part: feature:13393392-13393567:-1:exon
so has part: feature:13388522-13388563:-1:exon
so has part: feature:13387826-13387965:-1:exon
so has part: feature:13384830-13384968:-1:exon
so has part: feature:13384496-13384646:-1:exon
so has part: feature:13383262-13383384:-1:exon
so has part: feature:13381910-13382038:-1:exon
so has part: feature:13380938-13381078:-1:exon
so has part: feature:13379107-13379241:-1:exon
so has part: feature:13374558-13374736:-1:exon
so has part: feature:13372473-13372572:-1:exon
so has part: feature:13369703-13369916:-1:exon
so has part: feature:13364396-13364642:-1:exon
so has part: feature:13357784-13358117:-1:exon

XP_019838864.1
type: Protein
SIO_000068: ncbiprotein

position:13357784:-1
position: 13357784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13465758:-1
position: 13465758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13465697-13465758:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13435328-13435432:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13400679-13400828:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:13399842-13399990:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:13398597-13398693:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:13398091-13398183:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:13394506-13394676:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:13393392-13393567:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:13388522-13388563:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:13387826-13387965:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:13384830-13384968:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:13384496-13384646:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:13383262-13383384:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:13381910-13382038:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:13380938-13381078:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:13379107-13379241:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:13374558-13374736:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:13372473-13372572:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:13369703-13369916:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:13364396-13364642:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:13357784-13358117:-1:exon

CHD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: CHD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromodomain-helicase-DNA-binding protein 2 isoform X3
translation: MAHKQREDYLNLSPCIFTWYQIFSQLTFDGEKLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQTVPKPRVKKQPKTQRGKRKKQDSSDDEDEDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAVEANGDPSSDFDPEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCHLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELDERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPGKKRGPTIKISGVQVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLSCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKEKQMSSRKDKEGDKERKRSKDKKEKPKGGDAKSSSKSKXSQGPVHITAGSEPVPIGEDEEDDLDQETFSICKERMRPVKKALKQLDKPDKGLSVQEQLEHTRSCLLKIGDRIAECLKAYSDQEHTKLWRRNLWIFVSKFTEFDARKLHKLYKMAHKKRSQEEEEQKKKEDVIGGKKPFRPEASGSSRDSLMSQPHTPHNLHPQKPHLPASHGPQMHGHPRDNYSHPNKRHFSNADRGDWQRERKFNYGGGNSNLPWGSDRHHQYEQHWYKDHHYGDRRHVDAHRSGSYRPNNLSRKRPYDQYSSDRDHRGHRDYYDRHHHDSKRRRSDEFRPQNYHQQDFRRMSDHRPTMGYHGQGPSDHHRSFHTDKLGEYKQPLPPLHPAVSDPRSPPSQKSPHDSKSPLDHRSPLERSLEQKNNPDYNWNVRKT
SIO_010081: CHD2
subclass of: SO_0000673
so part of: CHD2
location: complement(join(13357784..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13441951..13442012,13443619..13443705,13447650..13447881,13462001..13462101))
location: region:13357784-13462101:-1
so has part: feature:13462001-13462101:-1:exon
so has part: feature:13447650-13447881:-1:exon
so has part: feature:13443619-13443705:-1:exon
so has part: feature:13441951-13442012:-1:exon
so has part: feature:13432413-13432553:-1:exon
so has part: feature:13430702-13430835:-1:exon
so has part: feature:13429781-13430006:-1:exon
so has part: feature:13428364-13428464:-1:exon
so has part: feature:13427441-13427485:-1:exon
so has part: feature:13427115-13427293:-1:exon
so has part: feature:13424988-13425112:-1:exon
so has part: feature:13421559-13421775:-1:exon
so has part: feature:13419683-13419772:-1:exon
so has part: feature:13418611-13418801:-1:exon
so has part: feature:13408047-13408235:-1:exon
so has part: feature:13406201-13406363:-1:exon
so has part: feature:13405716-13405868:-1:exon
so has part: feature:13403914-13403985:-1:exon
so has part: feature:13400679-13400828:-1:exon
so has part: feature:13399842-13399990:-1:exon
so has part: feature:13398597-13398693:-1:exon
so has part: feature:13398091-13398183:-1:exon
so has part: feature:13394506-13394676:-1:exon
so has part: feature:13393392-13393567:-1:exon
so has part: feature:13388522-13388563:-1:exon
so has part: feature:13387826-13387965:-1:exon
so has part: feature:13384830-13384968:-1:exon
so has part: feature:13384496-13384646:-1:exon
so has part: feature:13383262-13383384:-1:exon
so has part: feature:13381910-13382038:-1:exon
so has part: feature:13380938-13381078:-1:exon
so has part: feature:13379107-13379241:-1:exon
so has part: feature:13374558-13374736:-1:exon
so has part: feature:13372473-13372572:-1:exon
so has part: feature:13369703-13369916:-1:exon
so has part: feature:13364396-13364642:-1:exon
so has part: feature:13357784-13358117:-1:exon

XP_019838865.1
type: Protein
SIO_000068: ncbiprotein

position:13462101:-1
position: 13462101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462001-13462101:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13400679-13400828:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13399842-13399990:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:13398597-13398693:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:13398091-13398183:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:13394506-13394676:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:13393392-13393567:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:13388522-13388563:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:13387826-13387965:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:13384830-13384968:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:13384496-13384646:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:13383262-13383384:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:13381910-13382038:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:13380938-13381078:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:13379107-13379241:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:13374558-13374736:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:13372473-13372572:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:13369703-13369916:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:13364396-13364642:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:13357784-13358117:-1:exon

CHD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: CHD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: chromodomain-helicase-DNA-binding protein 2 isoform X1
translation: MAHKQREDYLNLSPCIFTWYQIFSQLTFDGEKLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVKKMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKRKWELSEDEQEQGSSAESEPEQTVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDDEDEDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQDNSETIEKVLDSRLGKKGATGASTTVYAVEANGDPSSDFDPEKDEGEVQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQSCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCHLIKPPEENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELDERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPGKKRGPTIKISGVQVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLSCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKEKQMSSRKDKEGDKERKRSKDKKEKPKGGDAKSSSKSKXSQGPVHITAGSEPVPIGEDEEDDLDQETFSICKERMRPVKKALKQLDKPDKGLSVQEQLEHTRSCLLKIGDRIAECLKAYSDQEHTKLWRRNLWIFVSKFTEFDARKLHKLYKMAHKKRSQEEEEQKKKEDVIGGKKPFRPEASGSSRDSLMSQPHTPHNLHPQKPHLPASHGPQMHGHPRDNYSHPNKRHFSNADRGDWQRERKFNYGGGNSNLPWGSDRHHQYEQHWYKDHHYGDRRHVDAHRSGSYRPNNLSRKRPYDQYSSDRDHRGHRDYYDRHHHDSKRRRSDEFRPQNYHQQDFRRMSDHRPTMGYHGQGPSDHHRSFHTDKLGEYKQPLPPLHPAVSDPRSPPSQKSPHDSKSPLDHRSPLERSLEQKNNPDYNWNVRKT
SIO_010081: CHD2
subclass of: SO_0000673
so part of: CHD2
location: complement(join(13357784..13358117,13364396..13364642,13369703..13369916,13372473..13372572,13374558..13374736,13379107..13379241,13380938..13381078,13381910..13382038,13383262..13383384,13384496..13384646,13384830..13384968,13387826..13387965,13388522..13388563,13393392..13393567,13394506..13394676,13398091..13398183,13398597..13398693,13399842..13399990,13400679..13400828,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13435328..13435432,13441951..13442012,13443619..13443705,13447650..13447881,13462001..13462101))
location: region:13357784-13462101:-1
so has part: feature:13462001-13462101:-1:exon
so has part: feature:13447650-13447881:-1:exon
so has part: feature:13443619-13443705:-1:exon
so has part: feature:13441951-13442012:-1:exon
so has part: feature:13435328-13435432:-1:exon
so has part: feature:13432413-13432553:-1:exon
so has part: feature:13430702-13430835:-1:exon
so has part: feature:13429781-13430006:-1:exon
so has part: feature:13428364-13428464:-1:exon
so has part: feature:13427441-13427485:-1:exon
so has part: feature:13427115-13427293:-1:exon
so has part: feature:13424988-13425112:-1:exon
so has part: feature:13421559-13421775:-1:exon
so has part: feature:13419683-13419772:-1:exon
so has part: feature:13418611-13418801:-1:exon
so has part: feature:13408047-13408235:-1:exon
so has part: feature:13406201-13406363:-1:exon
so has part: feature:13405716-13405868:-1:exon
so has part: feature:13403914-13403985:-1:exon
so has part: feature:13400679-13400828:-1:exon
so has part: feature:13399842-13399990:-1:exon
so has part: feature:13398597-13398693:-1:exon
so has part: feature:13398091-13398183:-1:exon
so has part: feature:13394506-13394676:-1:exon
so has part: feature:13393392-13393567:-1:exon
so has part: feature:13388522-13388563:-1:exon
so has part: feature:13387826-13387965:-1:exon
so has part: feature:13384830-13384968:-1:exon
so has part: feature:13384496-13384646:-1:exon
so has part: feature:13383262-13383384:-1:exon
so has part: feature:13381910-13382038:-1:exon
so has part: feature:13380938-13381078:-1:exon
so has part: feature:13379107-13379241:-1:exon
so has part: feature:13374558-13374736:-1:exon
so has part: feature:13372473-13372572:-1:exon
so has part: feature:13369703-13369916:-1:exon
so has part: feature:13364396-13364642:-1:exon
so has part: feature:13357784-13358117:-1:exon

XP_019838863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13462001-13462101:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13435328-13435432:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13400679-13400828:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:13399842-13399990:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:13398597-13398693:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:13398091-13398183:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:13394506-13394676:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:13393392-13393567:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:13388522-13388563:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:13387826-13387965:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:13384830-13384968:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:13384496-13384646:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:13383262-13383384:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:13381910-13382038:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:13380938-13381078:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:13379107-13379241:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:13374558-13374736:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:13372473-13372572:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:13369703-13369916:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:13364396-13364642:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:13357784-13358117:-1:exon

CHD2
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: CHD2
product: chromodomain helicase DNA binding protein 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_002183206.1
SIO_010081: CHD2
so part of: CHD2
location: complement(join(13399914..13399990,13400679..13400913,13403914..13403985,13405716..13405868,13406201..13406363,13408047..13408235,13418611..13418801,13419683..13419772,13421559..13421775,13424988..13425112,13427115..13427293,13427441..13427485,13428364..13428464,13429781..13430006,13430702..13430835,13432413..13432553,13435328..13435432,13441951..13442012,13443619..13443705,13447650..13447881,13462001..13462419))
location: region:13399914-13462419:-1
so has part: feature:13462001-13462419:-1:exon
so has part: feature:13447650-13447881:-1:exon
so has part: feature:13443619-13443705:-1:exon
so has part: feature:13441951-13442012:-1:exon
so has part: feature:13435328-13435432:-1:exon
so has part: feature:13432413-13432553:-1:exon
so has part: feature:13430702-13430835:-1:exon
so has part: feature:13429781-13430006:-1:exon
so has part: feature:13428364-13428464:-1:exon
so has part: feature:13427441-13427485:-1:exon
so has part: feature:13427115-13427293:-1:exon
so has part: feature:13424988-13425112:-1:exon
so has part: feature:13421559-13421775:-1:exon
so has part: feature:13419683-13419772:-1:exon
so has part: feature:13418611-13418801:-1:exon
so has part: feature:13408047-13408235:-1:exon
so has part: feature:13406201-13406363:-1:exon
so has part: feature:13405716-13405868:-1:exon
so has part: feature:13403914-13403985:-1:exon
so has part: feature:13400679-13400913:-1:exon
so has part: feature:13399914-13399990:-1:exon

position:13399914:-1
position: 13399914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13462419:-1
position: 13462419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13462001-13462419:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13447650-13447881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13443619-13443705:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13441951-13442012:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13435328-13435432:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13432413-13432553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13430702-13430835:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13429781-13430006:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13428364-13428464:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13427441-13427485:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13427115-13427293:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:13424988-13425112:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:13421559-13421775:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:13419683-13419772:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:13418611-13418801:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:13408047-13408235:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:13406201-13406363:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:13405716-13405868:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:13403914-13403985:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:13400679-13400913:-1:exon

position:13400913:-1
position: 13400913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:13399914-13399990:-1:exon

LOC109575315
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 13447905..13451468
location: region:13447905-13451468:1
so has part: feature:13447905-13451468:1:exon

109575315
type: Gene
SIO_000068: ncbigene

position:13447905:1
position: 13447905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13451468:1
position: 13451468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13447905-13451468:1:exon

LOC109575315
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9915
gene: LOC109575315
product: histidine triad nucleotide-binding protein 1 pseudogene
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 12 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
transcript id: XR_002183207.1
SIO_010081: LOC109575315
so part of: LOC109575315
location: 13447905..13451468
location: region:13447905-13451468:1
so has part: feature:13447905-13451468:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13447905-13451468:1:exon

LOC109575132
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575132
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 13520794..13521886
location: region:13520794-13521886:1
so has part: feature:13520794-13521886:1:exon

109575132
type: Gene
SIO_000068: ncbigene

position:13520794:1
position: 13520794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13521886:1
position: 13521886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13520794-13521886:1:exon

LOC109575132
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575132
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575132
subclass of: SO_0000673
so part of: LOC109575132
location: 13520794..13521322
location: region:13520794-13521322:1
so has part: feature:13520794-13521322:1:exon

position:13521322:1
position: 13521322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13520794-13521322:1:exon

LOC109575132
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575132
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575132
subclass of: SO_0000673
so part of: LOC109575132
location: 13521576..13521886
location: region:13521576-13521886:1
so has part: feature:13521576-13521886:1:exon

position:13521576:1
position: 13521576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13521576-13521886:1:exon

LOC109575264
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575264
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(13533977..13536282)
location: region:13533977-13536282:-1
so has part: feature:13533977-13536282:-1:exon
subclass of: SO_0000011

109575264
type: Gene
SIO_000068: ncbigene

position:13533977:-1
position: 13533977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13536282:-1
position: 13536282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13533977-13536282:-1:exon

LOC109575264
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9915
nc RNA class: lncRNA
gene: LOC109575264
product: uncharacterized LOC109575264
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XR_002183194.1
SIO_010081: LOC109575264
subclass of: SO_0000673
so part of: LOC109575264
location: complement(join(13533977..13534229,13535588..13536282))
location: region:13533977-13536282:-1
so has part: feature:13535588-13536282:-1:exon
so has part: feature:13533977-13534229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13535588-13536282:-1:exon

position:13535588:-1
position: 13535588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13533977-13534229:-1:exon

position:13534229:-1
position: 13534229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109575133
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575133
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(13588753..13596791)
location: region:13588753-13596791:-1
so has part: feature:13588753-13596791:-1:exon

109575133
type: Gene
SIO_000068: ncbigene

position:13588753:-1
position: 13588753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13596791:-1
position: 13596791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13588753-13596791:-1:exon

LOC109575133
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575133
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 83% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575133
subclass of: SO_0000673
so part of: LOC109575133
location: complement(13588753..13589336)
location: region:13588753-13589336:-1
so has part: feature:13588753-13589336:-1:exon

position:13589336:-1
position: 13589336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13588753-13589336:-1:exon

LOC109575133
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575133
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 83% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575133
subclass of: SO_0000673
so part of: LOC109575133
location: complement(13596697..13596791)
location: region:13596697-13596791:-1
so has part: feature:13596697-13596791:-1:exon

position:13596697:-1
position: 13596697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13596697-13596791:-1:exon

FAM174B
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: FAM174B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13633162..13688238
location: region:13633162-13688238:1
so has part: feature:13633162-13688238:1:exon
subclass of: SO_0000010

109575134
type: Gene
SIO_000068: ncbigene

position:13633162:1
position: 13633162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13688238:1
position: 13688238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13633162-13688238:1:exon

FAM174B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: FAM174B
product: family with sequence similarity 174 member B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 ESTs, 2 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983180.1
SIO_010081: FAM174B
subclass of: SO_0000673
so part of: FAM174B
location: join(13633162..13633204,13634349..13634397,13647165..13647421,13651338..13651362,13670337..13670468,13686520..13688238)
location: region:13633162-13688238:1
so has part: feature:13633162-13633204:1:exon
so has part: feature:13634349-13634397:1:exon
so has part: feature:13647165-13647421:1:exon
so has part: feature:13651338-13651362:1:exon
so has part: feature:13670337-13670468:1:exon
so has part: feature:13686520-13688238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13633162-13633204:1:exon

position:13633204:1
position: 13633204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13634349-13634397:1:exon

position:13634349:1
position: 13634349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13634397:1
position: 13634397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13647165-13647421:1:exon

position:13647165:1
position: 13647165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13647421:1
position: 13647421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:13651338-13651362:1:exon

position:13651338:1
position: 13651338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13651362:1
position: 13651362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:13670337-13670468:1:exon

position:13670337:1
position: 13670337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13670468:1
position: 13670468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:13686520-13688238:1:exon

position:13686520:1
position: 13686520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FAM174B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: FAM174B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: membrane protein FAM174B
translation: MKGYGVIVSSWTCPSELSRSTLRMLLXAEMRRAXARASRAQSAAPPQPGAERQPRPPPGPGPGNATGTGSGEAAGGGGSSNSSGDALVTRISSLLRDLPTLKAAVIVACAFTAFLIVCLIVKMFKSGKRLKKTRKYDIITXPAERVEMAPLNEEDDEDEDSTVFDIKYR
SIO_010081: FAM174B
subclass of: SO_0000673
so part of: FAM174B
location: join(13633162..13633204,13634349..13634397,13647165..13647421,13651338..13651362,13670337..13670468,13686520..13686523)
location: region:13633162-13686523:1
so has part: feature:13633162-13633204:1:exon
so has part: feature:13634349-13634397:1:exon
so has part: feature:13647165-13647421:1:exon
so has part: feature:13651338-13651362:1:exon
so has part: feature:13670337-13670468:1:exon
so has part: feature:13686520-13686523:1:exon

XP_019838739.1
type: Protein
SIO_000068: ncbiprotein

position:13686523:1
position: 13686523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13633162-13633204:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13634349-13634397:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13647165-13647421:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13651338-13651362:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13670337-13670468:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13686520-13686523:1:exon

LOC109575320
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575320
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(13745715..13756098)
location: region:13745715-13756098:-1
so has part: feature:13745715-13756098:-1:exon

109575320
type: Gene
SIO_000068: ncbigene

position:13745715:-1
position: 13745715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13756098:-1
position: 13756098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13745715-13756098:-1:exon

LOC109575320
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575320
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575320
subclass of: SO_0000673
so part of: LOC109575320
location: complement(13745715..13745804)
location: region:13745715-13745804:-1
so has part: feature:13745715-13745804:-1:exon

position:13745804:-1
position: 13745804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13745715-13745804:-1:exon

LOC109575320
type: Exon
subclass of: SO_0000147
RO_0002162: 9915
gene: LOC109575320
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 14% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC109575320
subclass of: SO_0000673
so part of: LOC109575320
location: complement(13755879..13756098)
location: region:13755879-13756098:-1
so has part: feature:13755879-13756098:-1:exon

position:13755879:-1
position: 13755879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13755879-13756098:-1:exon

ST8SIA2
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: ST8SIA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(13832034..13904348)
location: region:13832034-13904348:-1
so has part: feature:13832034-13904348:-1:exon
subclass of: SO_0000010

109575590
type: Gene
SIO_000068: ncbigene

position:13832034:-1
position: 13832034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13904348:-1
position: 13904348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13832034-13904348:-1:exon

ST8SIA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: ST8SIA2
product: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 11 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 103 samples with support for all annotated introns
transcript id: XM_019983823.1
SIO_010081: ST8SIA2
subclass of: SO_0000673
so part of: ST8SIA2
location: complement(join(13832034..13836613,13851935..13852228,13855995..13856252,13861800..13861928,13864137..13864199,13904221..13904348))
location: region:13832034-13904348:-1
so has part: feature:13904221-13904348:-1:exon
so has part: feature:13864137-13864199:-1:exon
so has part: feature:13861800-13861928:-1:exon
so has part: feature:13855995-13856252:-1:exon
so has part: feature:13851935-13852228:-1:exon
so has part: feature:13832034-13836613:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13904221-13904348:-1:exon

position:13904221:-1
position: 13904221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13864137-13864199:-1:exon

position:13864137:-1
position: 13864137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13864199:-1
position: 13864199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13861800-13861928:-1:exon

position:13861800:-1
position: 13861800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13861928:-1
position: 13861928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:13855995-13856252:-1:exon

position:13855995:-1
position: 13855995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13856252:-1
position: 13856252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:13851935-13852228:-1:exon

position:13851935:-1
position: 13851935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13852228:-1
position: 13852228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:13832034-13836613:-1:exon

position:13836613:-1
position: 13836613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ST8SIA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: ST8SIA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: alpha-2,8-sialyltransferase 8B
translation: MQLQFRSWMLAALTLLVVFLIFADISEIEEEIGNSGGRGTIRSAVNSLHSKSNRAEVVINGSSSPAVVDRSNESIKHNIQPASAKWRHNQTLSLRIRKQILKFLDAEKDISVLKGTLKPGDIIHYIFDRDSTMNVSQNLYELLPRTSPLKNKHFGTCAIVGNSGVLLNSGCGQEIDTHSFVIRCNLAPVQEYARDVGLKTDLVTMNPSVVQRAFEDLVNATWREKLLQRLHSLNGSILWIPAFMARGGKQRVEWVNELILKHHVNVRTAYPSLRLLHAVRGYWLTNKVHIKRPTTGLLMYTLATRFCNQIYLYGFWPFPLDQNQNPVKYHYYDSLKYGYTSQASPHTMPLEFKALKSLHEQGALKLTVGQCDGAT
SIO_010081: ST8SIA2
subclass of: SO_0000673
so part of: ST8SIA2
location: complement(join(13836328..13836613,13851935..13852228,13855995..13856252,13861800..13861928,13864137..13864199,13904221..13904318))
location: region:13836328-13904318:-1
so has part: feature:13904221-13904318:-1:exon
so has part: feature:13864137-13864199:-1:exon
so has part: feature:13861800-13861928:-1:exon
so has part: feature:13855995-13856252:-1:exon
so has part: feature:13851935-13852228:-1:exon
so has part: feature:13836328-13836613:-1:exon

XP_019839382.1
type: Protein
SIO_000068: ncbiprotein

position:13836328:-1
position: 13836328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13904318:-1
position: 13904318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13904221-13904318:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13864137-13864199:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13861800-13861928:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13855995-13856252:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13851935-13852228:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13836328-13836613:-1:exon

SLCO3A1
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: SLCO3A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(14166260..14609705)
location: region:14166260-14609705:-1
so has part: feature:14166260-14609705:-1:exon
subclass of: SO_0000010

109575541
type: Gene
SIO_000068: ncbigene

position:14166260:-1
position: 14166260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14609705:-1
position: 14609705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14166260-14609705:-1:exon

SLCO3A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SLCO3A1
product: solute carrier organic anion transporter family member 3A1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 151 samples with support for all annotated introns
transcript id: XM_019983751.1
SIO_010081: SLCO3A1
subclass of: SO_0000673
so part of: SLCO3A1
location: complement(join(14166260..14166920,14176370..14176612,14189215..14189279,14193156..14193331,14205981..14206119,14207407..14207605,14215710..14215874,14242170..14242433,14256381..14256479,14512812..14513277,14609418..14609705))
location: region:14166260-14609705:-1
so has part: feature:14609418-14609705:-1:exon
so has part: feature:14512812-14513277:-1:exon
so has part: feature:14256381-14256479:-1:exon
so has part: feature:14242170-14242433:-1:exon
so has part: feature:14215710-14215874:-1:exon
so has part: feature:14207407-14207605:-1:exon
so has part: feature:14205981-14206119:-1:exon
so has part: feature:14193156-14193331:-1:exon
so has part: feature:14189215-14189279:-1:exon
so has part: feature:14176370-14176612:-1:exon
so has part: feature:14166260-14166920:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14609418-14609705:-1:exon

position:14609418:-1
position: 14609418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14512812-14513277:-1:exon

position:14512812:-1
position: 14512812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14513277:-1
position: 14513277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:14256381-14256479:-1:exon

position:14256381:-1
position: 14256381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14256479:-1
position: 14256479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14242170-14242433:-1:exon

position:14242170:-1
position: 14242170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14242433:-1
position: 14242433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:14215710-14215874:-1:exon

position:14215710:-1
position: 14215710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14215874:-1
position: 14215874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:14207407-14207605:-1:exon

position:14207407:-1
position: 14207407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14207605:-1
position: 14207605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:14205981-14206119:-1:exon

position:14205981:-1
position: 14205981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14206119:-1
position: 14206119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14193156-14193331:-1:exon

position:14193156:-1
position: 14193156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14193331:-1
position: 14193331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:14189215-14189279:-1:exon

position:14189215:-1
position: 14189215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14189279:-1
position: 14189279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:14176370-14176612:-1:exon

position:14176370:-1
position: 14176370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14176612:-1
position: 14176612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:14166260-14166920:-1:exon

position:14166920:-1
position: 14166920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLCO3A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SLCO3A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier organic anion transporter family member 3A1 isoform X2
translation: MQAKKPGGSSGGGRSGELQGDEAQRNKKKKKKVSCFSNIKIFLVSECALMLAQGTVGAYLVSVLTTLERRFNLQSADVGVIASSFEIGNLALILFVSYFGARGHRPRLIGCGGIVMALGALLSALPEFLTHQYKYEAGEIRWGAEGRDVCAANGSGGDQGPDPDLICRSRTATNMMYLLLIGAQVLLGIGATPVQPLGVSYIDDHVRRKDSSLYIGILFTMLVFGPACGFILGSFCTKIYVDAVFIDTSNLDITPDDPRWIGAWWGGFLLCGALLFFSSVLMFGFPQSLPPHSDPALESEQAMLPEREYERPKPSNGVLRHPLEPDSSASCFQQLRVIPKVTKHLLSNPVFTCIILAACMEIAVVAGFAAFLGKYLEQQFNLTTSSANQLLGMTAIPCACLGIFLGGLLVKKLSLSALGAIRMAMLVNLVSTACYVSFLFLGCDTGPVAGVTVPYGNSSTPGSALDPYSSCNKNCECQTDSFTPVCGADGITYLSACFAGCNSTNLTGCACLMTIPPENATVIPGKCPSPGCQEAFLTFLCVMCVCSMIGAMAQTPSVIILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGAGIDSTCLFWSTFCGEQGACALYDNVAYRYLYVSIAIALKSFAFLLYTTTWQCLRKNYKRYIKNHEGGLSTSTEYQDIETEKTCPESQSPSEDSFVRS
SIO_010081: SLCO3A1
subclass of: SO_0000673
so part of: SLCO3A1
location: complement(join(14166838..14166920,14176370..14176612,14189215..14189279,14193156..14193331,14205981..14206119,14207407..14207605,14215710..14215874,14242170..14242433,14256381..14256479,14512812..14513277,14609418..14609597))
location: region:14166838-14609597:-1
so has part: feature:14609418-14609597:-1:exon
so has part: feature:14512812-14513277:-1:exon
so has part: feature:14256381-14256479:-1:exon
so has part: feature:14242170-14242433:-1:exon
so has part: feature:14215710-14215874:-1:exon
so has part: feature:14207407-14207605:-1:exon
so has part: feature:14205981-14206119:-1:exon
so has part: feature:14193156-14193331:-1:exon
so has part: feature:14189215-14189279:-1:exon
so has part: feature:14176370-14176612:-1:exon
so has part: feature:14166838-14166920:-1:exon

XP_019839310.1
type: Protein
SIO_000068: ncbiprotein

position:14166838:-1
position: 14166838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14609597:-1
position: 14609597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14609418-14609597:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14512812-14513277:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14256381-14256479:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14242170-14242433:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14215710-14215874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14207407-14207605:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14205981-14206119:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14193156-14193331:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14189215-14189279:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14176370-14176612:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:14166838-14166920:-1:exon

SLCO3A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SLCO3A1
product: solute carrier organic anion transporter family member 3A1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 175 samples with support for all annotated introns
transcript id: XM_019983750.1
SIO_010081: SLCO3A1
subclass of: SO_0000673
so part of: SLCO3A1
location: complement(join(14175140..14176612,14189215..14189279,14193156..14193331,14205981..14206119,14207407..14207605,14215710..14215874,14242170..14242433,14256381..14256479,14512812..14513277,14609418..14609704))
location: region:14175140-14609704:-1
so has part: feature:14609418-14609704:-1:exon
so has part: feature:14512812-14513277:-1:exon
so has part: feature:14256381-14256479:-1:exon
so has part: feature:14242170-14242433:-1:exon
so has part: feature:14215710-14215874:-1:exon
so has part: feature:14207407-14207605:-1:exon
so has part: feature:14205981-14206119:-1:exon
so has part: feature:14193156-14193331:-1:exon
so has part: feature:14189215-14189279:-1:exon
so has part: feature:14175140-14176612:-1:exon

position:14175140:-1
position: 14175140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14609704:-1
position: 14609704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14609418-14609704:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14512812-14513277:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14256381-14256479:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14242170-14242433:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14215710-14215874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14207407-14207605:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14205981-14206119:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14193156-14193331:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14189215-14189279:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14175140-14176612:-1:exon

SLCO3A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SLCO3A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier organic anion transporter family member 3A1 isoform X1
translation: MQAKKPGGSSGGGRSGELQGDEAQRNKKKKKKVSCFSNIKIFLVSECALMLAQGTVGAYLVSVLTTLERRFNLQSADVGVIASSFEIGNLALILFVSYFGARGHRPRLIGCGGIVMALGALLSALPEFLTHQYKYEAGEIRWGAEGRDVCAANGSGGDQGPDPDLICRSRTATNMMYLLLIGAQVLLGIGATPVQPLGVSYIDDHVRRKDSSLYIGILFTMLVFGPACGFILGSFCTKIYVDAVFIDTSNLDITPDDPRWIGAWWGGFLLCGALLFFSSVLMFGFPQSLPPHSDPALESEQAMLPEREYERPKPSNGVLRHPLEPDSSASCFQQLRVIPKVTKHLLSNPVFTCIILAACMEIAVVAGFAAFLGKYLEQQFNLTTSSANQLLGMTAIPCACLGIFLGGLLVKKLSLSALGAIRMAMLVNLVSTACYVSFLFLGCDTGPVAGVTVPYGNSSTPGSALDPYSSCNKNCECQTDSFTPVCGADGITYLSACFAGCNSTNLTGCACLMTIPPENATVIPGKCPSPGCQEAFLTFLCVMCVCSMIGAMAQTPSVIILIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGAGIDSTCLFWSTFCGEQGACALYDNVAYRYLYVSIAIALKSFAFLLYTTTWQCLRKNYKRYIKNHEGGLSTSEFFASTLTLDNLGRDPVPANQTHRTKFIYNLEDHEWCENMESVL
SIO_010081: SLCO3A1
subclass of: SO_0000673
so part of: SLCO3A1
location: complement(join(14176233..14176612,14189215..14189279,14193156..14193331,14205981..14206119,14207407..14207605,14215710..14215874,14242170..14242433,14256381..14256479,14512812..14513277,14609418..14609597))
location: region:14176233-14609597:-1
so has part: feature:14609418-14609597:-1:exon
so has part: feature:14512812-14513277:-1:exon
so has part: feature:14256381-14256479:-1:exon
so has part: feature:14242170-14242433:-1:exon
so has part: feature:14215710-14215874:-1:exon
so has part: feature:14207407-14207605:-1:exon
so has part: feature:14205981-14206119:-1:exon
so has part: feature:14193156-14193331:-1:exon
so has part: feature:14189215-14189279:-1:exon
so has part: feature:14176233-14176612:-1:exon

XP_019839309.1
type: Protein
SIO_000068: ncbiprotein

position:14176233:-1
position: 14176233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14609418-14609597:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:14512812-14513277:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:14256381-14256479:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14242170-14242433:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:14215710-14215874:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:14207407-14207605:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:14205981-14206119:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14193156-14193331:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:14189215-14189279:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:14176233-14176612:-1:exon

SV2B
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: SV2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15235177..15492463)
location: region:15235177-15492463:-1
so has part: feature:15235177-15492463:-1:exon
subclass of: SO_0000010

109575690
type: Gene
SIO_000068: ncbigene

position:15235177:-1
position: 15235177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15492463:-1
position: 15492463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15235177-15492463:-1:exon

SV2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SV2B
product: synaptic vesicle glycoprotein 2B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 41 ESTs, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_019983969.1
SIO_010081: SV2B
subclass of: SO_0000673
so part of: SV2B
location: complement(join(15235177..15238235,15245857..15246016,15253488..15253688,15257889..15258022,15272376..15272540,15276156..15276244,15277688..15277798,15287569..15287658,15289425..15289558,15297545..15297696,15298151..15298331,15335669..15336450,15491273..15491459))
location: region:15235177-15491459:-1
so has part: feature:15491273-15491459:-1:exon
so has part: feature:15335669-15336450:-1:exon
so has part: feature:15298151-15298331:-1:exon
so has part: feature:15297545-15297696:-1:exon
so has part: feature:15289425-15289558:-1:exon
so has part: feature:15287569-15287658:-1:exon
so has part: feature:15277688-15277798:-1:exon
so has part: feature:15276156-15276244:-1:exon
so has part: feature:15272376-15272540:-1:exon
so has part: feature:15257889-15258022:-1:exon
so has part: feature:15253488-15253688:-1:exon
so has part: feature:15245857-15246016:-1:exon
so has part: feature:15235177-15238235:-1:exon

position:15491459:-1
position: 15491459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15491273-15491459:-1:exon

position:15491273:-1
position: 15491273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15335669-15336450:-1:exon

position:15335669:-1
position: 15335669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15336450:-1
position: 15336450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15298151-15298331:-1:exon

position:15298151:-1
position: 15298151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15298331:-1
position: 15298331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:15297545-15297696:-1:exon

position:15297545:-1
position: 15297545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15297696:-1
position: 15297696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:15289425-15289558:-1:exon

position:15289425:-1
position: 15289425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15289558:-1
position: 15289558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:15287569-15287658:-1:exon

position:15287569:-1
position: 15287569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15287658:-1
position: 15287658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:15277688-15277798:-1:exon

position:15277688:-1
position: 15277688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15277798:-1
position: 15277798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:15276156-15276244:-1:exon

position:15276156:-1
position: 15276156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15276244:-1
position: 15276244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:15272376-15272540:-1:exon

position:15272376:-1
position: 15272376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15272540:-1
position: 15272540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:15257889-15258022:-1:exon

position:15257889:-1
position: 15257889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15258022:-1
position: 15258022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:15253488-15253688:-1:exon

position:15253488:-1
position: 15253488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15253688:-1
position: 15253688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:15245857-15246016:-1:exon

position:15245857:-1
position: 15245857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15246016:-1
position: 15246016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:15235177-15238235:-1:exon

position:15238235:-1
position: 15238235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SV2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: SV2B
product: synaptic vesicle glycoprotein 2B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 12 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_019983967.1
SIO_010081: SV2B
subclass of: SO_0000673
so part of: SV2B
location: complement(join(15237967..15238235,15245857..15246016,15253488..15253688,15257889..15258022,15272376..15272540,15276156..15276244,15277688..15277798,15287569..15287658,15289425..15289558,15297545..15297696,15298151..15298331,15335669..15336450,15492034..15492463))
location: region:15237967-15492463:-1
so has part: feature:15492034-15492463:-1:exon
so has part: feature:15335669-15336450:-1:exon
so has part: feature:15298151-15298331:-1:exon
so has part: feature:15297545-15297696:-1:exon
so has part: feature:15289425-15289558:-1:exon
so has part: feature:15287569-15287658:-1:exon
so has part: feature:15277688-15277798:-1:exon
so has part: feature:15276156-15276244:-1:exon
so has part: feature:15272376-15272540:-1:exon
so has part: feature:15257889-15258022:-1:exon
so has part: feature:15253488-15253688:-1:exon
so has part: feature:15245857-15246016:-1:exon
so has part: feature:15237967-15238235:-1:exon

position:15237967:-1
position: 15237967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15492034-15492463:-1:exon

position:15492034:-1
position: 15492034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15335669-15336450:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15298151-15298331:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15297545-15297696:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15289425-15289558:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15287569-15287658:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15277688-15277798:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15276156-15276244:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15272376-15272540:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15257889-15258022:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15253488-15253688:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15245857-15246016:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15237967-15238235:-1:exon

SV2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SV2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptic vesicle glycoprotein 2B
translation: MDDYKYQDNYEGYAPSDGYYRGNESNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKAKQAKMASSRADGLRGQADLLAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGLIVYLGMMGGAFVLGGLADKLGRKRVLSISLAINASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGWGFSMGSNYHFHSWRVFVIVCALPCTVSMVALKFLPESPRFLLEMGKHDEAWMILKHVHDTNMRAKGAPEKVFTVSNIKTPKQMDEFIEIQSSTGTWYQRWLVRFKTTFKQVWENALYCVMGPYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEAYKSKMKVFHDEHVYGVTINFTMENQIHQHGKLVNDKFTKMYFKHVLFEDTLFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYQHKFINCHFINVTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRVGRLKMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAATSLVGGGLIALRLPETREQVLM
SIO_010081: SV2B
subclass of: SO_0000673
so part of: SV2B
location: complement(join(15238052..15238235,15245857..15246016,15253488..15253688,15257889..15258022,15272376..15272540,15276156..15276244,15277688..15277798,15287569..15287658,15289425..15289558,15297545..15297696,15298151..15298331,15335669..15336119))
location: region:15238052-15336119:-1
so has part: feature:15335669-15336119:-1:exon
so has part: feature:15298151-15298331:-1:exon
so has part: feature:15297545-15297696:-1:exon
so has part: feature:15289425-15289558:-1:exon
so has part: feature:15287569-15287658:-1:exon
so has part: feature:15277688-15277798:-1:exon
so has part: feature:15276156-15276244:-1:exon
so has part: feature:15272376-15272540:-1:exon
so has part: feature:15257889-15258022:-1:exon
so has part: feature:15253488-15253688:-1:exon
so has part: feature:15245857-15246016:-1:exon
so has part: feature:15238052-15238235:-1:exon

XP_019839526.1
type: Protein
SIO_000068: ncbiprotein

position:15238052:-1
position: 15238052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15336119:-1
position: 15336119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15335669-15336119:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15298151-15298331:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15297545-15297696:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15289425-15289558:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15287569-15287658:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15277688-15277798:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15276156-15276244:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15272376-15272540:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15257889-15258022:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15253488-15253688:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15245857-15246016:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15238052-15238235:-1:exon

SV2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: SV2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: synaptic vesicle glycoprotein 2B
translation: MDDYKYQDNYEGYAPSDGYYRGNESNPEEDAQSDVTEGHDEEDEIYEGEYQGIPHPDDVKAKQAKMASSRADGLRGQADLLAERMEDEEQLAHQYETIIDECGHGRFQWTLFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGLIVYLGMMGGAFVLGGLADKLGRKRVLSISLAINASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGIYASAMAWSIIPHYGWGFSMGSNYHFHSWRVFVIVCALPCTVSMVALKFLPESPRFLLEMGKHDEAWMILKHVHDTNMRAKGAPEKVFTVSNIKTPKQMDEFIEIQSSTGTWYQRWLVRFKTTFKQVWENALYCVMGPYRMNTLILAVVWFTMALSYYGLTVWFPDMIRYFQDEAYKSKMKVFHDEHVYGVTINFTMENQIHQHGKLVNDKFTKMYFKHVLFEDTLFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYQHKFINCHFINVTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRVGRLKMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAATSLVGGGLIALRLPETREQVLM
SIO_010081: SV2B
subclass of: SO_0000673
so part of: SV2B
location: complement(join(15238052..15238235,15245857..15246016,15253488..15253688,15257889..15258022,15272376..15272540,15276156..15276244,15277688..15277798,15287569..15287658,15289425..15289558,15297545..15297696,15298151..15298331,15335669..15336119))
location: region:15238052-15336119:-1
so has part: feature:15335669-15336119:-1:exon
so has part: feature:15298151-15298331:-1:exon
so has part: feature:15297545-15297696:-1:exon
so has part: feature:15289425-15289558:-1:exon
so has part: feature:15287569-15287658:-1:exon
so has part: feature:15277688-15277798:-1:exon
so has part: feature:15276156-15276244:-1:exon
so has part: feature:15272376-15272540:-1:exon
so has part: feature:15257889-15258022:-1:exon
so has part: feature:15253488-15253688:-1:exon
so has part: feature:15245857-15246016:-1:exon
so has part: feature:15238052-15238235:-1:exon

XP_019839528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15335669-15336119:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15298151-15298331:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15297545-15297696:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15289425-15289558:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15287569-15287658:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15277688-15277798:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15276156-15276244:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15272376-15272540:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15257889-15258022:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15253488-15253688:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15245857-15246016:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15238052-15238235:-1:exon

LOC109575135
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575135
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15628704..15939774
location: region:15628704-15939774:1
so has part: feature:15628704-15939774:1:exon
subclass of: SO_0000010

109575135
type: Gene
SIO_000068: ncbigene

position:15628704:1
position: 15628704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15939774:1
position: 15939774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15628704-15939774:1:exon

LOC109575135
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575135
product: A-kinase anchor protein 13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983181.1
SIO_010081: LOC109575135
subclass of: SO_0000673
so part of: LOC109575135
location: join(15628704..15628902,15718643..15718686,15752147..15752294,15766341..15766637,15775425..15775608,15811287..15811485,15814125..15817137,15820941..15821074,15866695..15866770,15873259..15873395,15882685..15883055,15885165..15885218,15888499..15888564,15890376..15890568,15893160..15893268,15899588..15899716,15903370..15903412,15905400..15905529,15911693..15911867,15925752..15925819,15928059..15928125,15932184..15932319,15933700..15933812,15934425..15934571,15935158..15935408,15937023..15937148,15937262..15937379,15938460..15938788,15939661..15939774)
location: region:15628704-15939774:1
so has part: feature:15628704-15628902:1:exon
so has part: feature:15718643-15718686:1:exon
so has part: feature:15752147-15752294:1:exon
so has part: feature:15766341-15766637:1:exon
so has part: feature:15775425-15775608:1:exon
so has part: feature:15811287-15811485:1:exon
so has part: feature:15814125-15817137:1:exon
so has part: feature:15820941-15821074:1:exon
so has part: feature:15866695-15866770:1:exon
so has part: feature:15873259-15873395:1:exon
so has part: feature:15882685-15883055:1:exon
so has part: feature:15885165-15885218:1:exon
so has part: feature:15888499-15888564:1:exon
so has part: feature:15890376-15890568:1:exon
so has part: feature:15893160-15893268:1:exon
so has part: feature:15899588-15899716:1:exon
so has part: feature:15903370-15903412:1:exon
so has part: feature:15905400-15905529:1:exon
so has part: feature:15911693-15911867:1:exon
so has part: feature:15925752-15925819:1:exon
so has part: feature:15928059-15928125:1:exon
so has part: feature:15932184-15932319:1:exon
so has part: feature:15933700-15933812:1:exon
so has part: feature:15934425-15934571:1:exon
so has part: feature:15935158-15935408:1:exon
so has part: feature:15937023-15937148:1:exon
so has part: feature:15937262-15937379:1:exon
so has part: feature:15938460-15938788:1:exon
so has part: feature:15939661-15939774:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15628704-15628902:1:exon

position:15628902:1
position: 15628902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15718643-15718686:1:exon

position:15718643:1
position: 15718643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15718686:1
position: 15718686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15752147-15752294:1:exon

position:15752147:1
position: 15752147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15752294:1
position: 15752294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:15766341-15766637:1:exon

position:15766341:1
position: 15766341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15766637:1
position: 15766637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:15775425-15775608:1:exon

position:15775425:1
position: 15775425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15775608:1
position: 15775608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:15811287-15811485:1:exon

position:15811287:1
position: 15811287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15811485:1
position: 15811485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:15814125-15817137:1:exon

position:15814125:1
position: 15814125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15817137:1
position: 15817137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:15820941-15821074:1:exon

position:15820941:1
position: 15820941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15821074:1
position: 15821074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:15866695-15866770:1:exon

position:15866695:1
position: 15866695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15866770:1
position: 15866770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:15873259-15873395:1:exon

position:15873259:1
position: 15873259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15873395:1
position: 15873395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:15882685-15883055:1:exon

position:15882685:1
position: 15882685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15883055:1
position: 15883055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:15885165-15885218:1:exon

position:15885165:1
position: 15885165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15885218:1
position: 15885218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:15888499-15888564:1:exon

position:15888499:1
position: 15888499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15888564:1
position: 15888564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:15890376-15890568:1:exon

position:15890376:1
position: 15890376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15890568:1
position: 15890568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:15893160-15893268:1:exon

position:15893160:1
position: 15893160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15893268:1
position: 15893268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:15899588-15899716:1:exon

position:15899588:1
position: 15899588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15899716:1
position: 15899716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:15903370-15903412:1:exon

position:15903370:1
position: 15903370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15903412:1
position: 15903412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:15905400-15905529:1:exon

position:15905400:1
position: 15905400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15905529:1
position: 15905529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:15911693-15911867:1:exon

position:15911693:1
position: 15911693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15911867:1
position: 15911867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:15925752-15925819:1:exon

position:15925752:1
position: 15925752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15925819:1
position: 15925819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:15928059-15928125:1:exon

position:15928059:1
position: 15928059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15928125:1
position: 15928125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:15932184-15932319:1:exon

position:15932184:1
position: 15932184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15932319:1
position: 15932319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:15933700-15933812:1:exon

position:15933700:1
position: 15933700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15933812:1
position: 15933812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:15934425-15934571:1:exon

position:15934425:1
position: 15934425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15934571:1
position: 15934571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:15935158-15935408:1:exon

position:15935158:1
position: 15935158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15935408:1
position: 15935408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:15937023-15937148:1:exon

position:15937023:1
position: 15937023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15937148:1
position: 15937148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:15937262-15937379:1:exon

position:15937262:1
position: 15937262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15937379:1
position: 15937379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:15938460-15938788:1:exon

position:15938460:1
position: 15938460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15938788:1
position: 15938788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:15939661-15939774:1:exon

position:15939661:1
position: 15939661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109575135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575135
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: A-kinase anchor protein 13-like
translation: MKLNPQQAPLYGDCVVTVLLAEEDKVEDDVVFYLVFSGSTLHHCTSTRKVSSNTLETVAPGHDCCETVKVLLCASKEGLPVFVVAEEDFQFIQDEAYDAAQFLATSAGNQQALNFTRFLDRSGPPSSDVNSLDEKVALAFRHLKLPAEWNVLGTDATSHDGGPRETLMHFAVRLGLLRLTWFLLQKPGGRGALSIHNQEGATPVSLALERGYHKLHRLLTEEDAGEPDSWSSLSYEIPYGDCSVRHHRELDVYMLTSESEPHQXPPLPGDSCTGHIFKLMNIQQQLMKTNLKQMDSLMPSAVTAQEPSSAPXDQDADGHFLPRESERTASQQLASPEAAESCQHCRGSSVGQTESSCDLSGAAKEEDTDPSCRKKSXGVERTGGEVGPAPITDPGAASAPDSCIQSVPDGRGEDPEGLLSCGVRDEETTSSAVATDLGPPGSVLQWGVAQACSGGRLVVASPAGASAPQATGEREHGLMHPIAAIVGSMLEVEERMKKQFEDSGISTAGDSDGKVTDEPVYGASILDRVWTPRSLKANKPAELILGVSNGKAATDQTAETETSKSYTERAHTPGAQNPQLIPAAAGDEVSEGLRPNTPLASMCASGSPFDLTLPGLHKDVTPTPKSEAESSGVHSQDSESPICSAAGGDKLGTAPGCQPSTGTSGGVSLAEHCDDTAPQPESTTTGQLGTRPLPPASCPSSPQASSTQSTLDTPERVDASPLQVSDKESQGEDLKAETSSADPAEVVPHPQAAPPXAEKEGASCLAVTPGGTVSLAGSESVTKDDALSLVPSQSEKGRAALQPHTGGGDGPDGDTRRPEEQPPEGGTTGLGPPPATLDPPPGMGNTGPGGLAGEQEFPSPTVAPEAPAVEGATASALLPGGQATATEGGKTQVVPEGPGGEGKARTCPTTEDGALCSGAXQEERRPPPPVPEAPGVPEEPGATAGAEDRVPQPSNSLGTPLARLHAEAKPNKEVAPAASRPTGGGAAQSLVPPGAGLAAYSSQDAPGAEPSSSAPPPSLLAGGPEAQNCSPASSALDVEVENTPCPGKSAGCEVSGDAALDGARVRGLQEALGAGTKDISHNAPDTSSCQEENMILGLPGASXAAGMTDPQGIAPLELVAPPGGEKKLEGADCGSVGLQEAQGDSKAHHDPPQPAGGERPPEMGPSGEPRGAPALPCAVSTKALHRPEGANSIEEAAIRIVDSVIEQVKASGALMTEGALGHGSPPRPPKAGPGTEPTAHASAGETSSLQPAETPPVDSGGREASGSLEQCFAGSEEPEIIVPVQGPAPETEMPDTKAEDEVDFLSNTQESSVSEEVALGNRTSTPEVKPGPKTQAINRENWCTIEPCPDAASLLAPTQSPECDSFLDVGLGRECASKPGVLKRESGSDSDLFHSPSEDVDSIVFSKPEEEQLACDVTGSSSSTDDTASLDRHSSHGSDVSLPQISSLNRSRDPQYLNGFNSHGVGAEGRESESEPAGSGEMEEEEMDSITEVPASRSVLRSSMRSLSPFRRHSWGPGKNAASDAEMNHRSSMRVLGDVVRRPPIHRRSMSWCPSGVQYSAALSADFNYRSFSLEGLTGGAGIGNKPSSSLEGNSSNTRELRHPFSGQERGDSLVSLSEEDLESGQREHRMFNQQTCHRSKQQGFNYCTSAVSSPLTKSVSLMTISHPGLDAQRQMRPARRISLSXSISPLLLKSKTLFSLGSSYSSDEEEELHSTRPFHSTSSNLTGSITEENFNFLPQSPKKDFEIKSGTKVSRTFSYIKNKMSSSKKSKEKEKEKDKIKEKEKDSKEKEKDKKSVNGHTFSSISMVGPIVCSQCMKPFTSKDAYTCASCGAFVHKGCRESLISCAKVKMKQPKGNLQAHDTSSLPTVIMRSKSSQPKERPRSAVLLADEAIAAPVFANRRSQQSIALSKSVSIQNIAGVGNDENISNTWKFLSHSTDSLNKISKVNESTESLTDEGTDMNEGQLMGDFENESKQLEAESWSQIVDSKFLKQHKKDVV…
SIO_010081: LOC109575135
subclass of: SO_0000673
so part of: LOC109575135
location: join(15718654..15718686,15752147..15752294,15766341..15766637,15775425..15775608,15811287..15811485,15814125..15817137,15820941..15821074,15866695..15866770,15873259..15873395,15882685..15883055,15885165..15885218,15888499..15888564,15890376..15890568,15893160..15893268,15899588..15899716,15903370..15903412,15905400..15905529,15911693..15911867,15925752..15925819,15928059..15928125,15932184..15932319,15933700..15933812,15934425..15934571,15935158..15935408,15937023..15937148,15937262..15937379,15938460..15938788,15939661..15939774)
location: region:15718654-15939774:1
so has part: feature:15718654-15718686:1:exon
so has part: feature:15752147-15752294:1:exon
so has part: feature:15766341-15766637:1:exon
so has part: feature:15775425-15775608:1:exon
so has part: feature:15811287-15811485:1:exon
so has part: feature:15814125-15817137:1:exon
so has part: feature:15820941-15821074:1:exon
so has part: feature:15866695-15866770:1:exon
so has part: feature:15873259-15873395:1:exon
so has part: feature:15882685-15883055:1:exon
so has part: feature:15885165-15885218:1:exon
so has part: feature:15888499-15888564:1:exon
so has part: feature:15890376-15890568:1:exon
so has part: feature:15893160-15893268:1:exon
so has part: feature:15899588-15899716:1:exon
so has part: feature:15903370-15903412:1:exon
so has part: feature:15905400-15905529:1:exon
so has part: feature:15911693-15911867:1:exon
so has part: feature:15925752-15925819:1:exon
so has part: feature:15928059-15928125:1:exon
so has part: feature:15932184-15932319:1:exon
so has part: feature:15933700-15933812:1:exon
so has part: feature:15934425-15934571:1:exon
so has part: feature:15935158-15935408:1:exon
so has part: feature:15937023-15937148:1:exon
so has part: feature:15937262-15937379:1:exon
so has part: feature:15938460-15938788:1:exon
so has part: feature:15939661-15939774:1:exon

XP_019838740.1
type: Protein
SIO_000068: ncbiprotein

position:15718654:1
position: 15718654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15718654-15718686:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:15752147-15752294:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:15766341-15766637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:15775425-15775608:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:15811287-15811485:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15814125-15817137:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15820941-15821074:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:15866695-15866770:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:15873259-15873395:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:15882685-15883055:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:15885165-15885218:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:15888499-15888564:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:15890376-15890568:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:15893160-15893268:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:15899588-15899716:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:15903370-15903412:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:15905400-15905529:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:15911693-15911867:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:15925752-15925819:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:15928059-15928125:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:15932184-15932319:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:15933700-15933812:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:15934425-15934571:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:15935158-15935408:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:15937023-15937148:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:15937262-15937379:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:15938460-15938788:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:15939661-15939774:1:exon

KLHL25
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16073585..16125019
location: region:16073585-16125019:1
so has part: feature:16073585-16125019:1:exon
subclass of: SO_0000010

109575490
type: Gene
SIO_000068: ncbigene

position:16073585:1
position: 16073585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16125019:1
position: 16125019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16073585-16125019:1:exon

KLHL25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: KLHL25
product: kelch like family member 25, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_019983667.1
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16073585..16073722,16109392..16111192,16123405..16125019)
location: region:16073585-16125019:1
so has part: feature:16073585-16073722:1:exon
so has part: feature:16109392-16111192:1:exon
so has part: feature:16123405-16125019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16073585-16073722:1:exon

position:16073722:1
position: 16073722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16109392-16111192:1:exon

position:16109392:1
position: 16109392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16111192:1
position: 16111192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16123405-16125019:1:exon

position:16123405:1
position: 16123405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KLHL25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: KLHL25
product: kelch like family member 25, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 90 samples with support for all annotated introns
transcript id: XM_019983665.1
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16073585..16073722,16109395..16111192,16123405..16125019)
location: region:16073585-16125019:1
so has part: feature:16073585-16073722:1:exon
so has part: feature:16109395-16111192:1:exon
so has part: feature:16123405-16125019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16073585-16073722:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16109395-16111192:1:exon

position:16109395:1
position: 16109395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16123405-16125019:1:exon

KLHL25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: KLHL25
product: kelch like family member 25, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_019983668.1
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16084709..16084959,16109395..16111192,16123405..16125019)
location: region:16084709-16125019:1
so has part: feature:16084709-16084959:1:exon
so has part: feature:16109395-16111192:1:exon
so has part: feature:16123405-16125019:1:exon

position:16084709:1
position: 16084709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16084709-16084959:1:exon

position:16084959:1
position: 16084959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16109395-16111192:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16123405-16125019:1:exon

KLHL25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: KLHL25
product: kelch like family member 25, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_019983664.1
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16089532..16089721,16092148..16092193,16109392..16111192,16123405..16125019)
location: region:16089532-16125019:1
so has part: feature:16089532-16089721:1:exon
so has part: feature:16092148-16092193:1:exon
so has part: feature:16109392-16111192:1:exon
so has part: feature:16123405-16125019:1:exon

position:16089532:1
position: 16089532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16089532-16089721:1:exon

position:16089721:1
position: 16089721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16092148-16092193:1:exon

position:16092148:1
position: 16092148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16092193:1
position: 16092193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16109392-16111192:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:16123405-16125019:1:exon

KLHL25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: KLHL25
product: kelch like family member 25, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_019983662.1
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16089532..16089721,16109395..16111192,16123405..16125019)
location: region:16089532-16125019:1
so has part: feature:16089532-16089721:1:exon
so has part: feature:16109395-16111192:1:exon
so has part: feature:16123405-16125019:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16089532-16089721:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16109395-16111192:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16123405-16125019:1:exon

KLHL25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kelch-like protein 25 isoform X1
translation: MTCRLSMSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHRMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESHDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFEAVRQSDDFNSLSKDTLLDLVSSDELEAEDERVVFEAVLQWVRHDLEQRKAHLPELLRGVRLALLPSDCLKEAASGDALLMADERTRLLVDEALRCKTRILQNDGVVTSPCARPRRAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGXHTSLAGVFPASPSVSLKQVEKYDPGANKWTMVAPLRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCYDPSENRWSIKAECPQPWRYTAAAVLGSQIFIMGGDTEFTAASAYRFDCESNQWTRIGDMTAKRMSCHALASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCVTTVPYSLIPTAFVSTWKHLPA
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16089715..16089721,16109395..16111175)
location: region:16089715-16111175:1
so has part: feature:16089715-16089721:1:exon
so has part: feature:16109395-16111175:1:exon

XP_019839221.1
type: Protein
SIO_000068: ncbiprotein

position:16089715:1
position: 16089715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16111175:1
position: 16111175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16089715-16089721:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16109395-16111175:1:exon

KLHL25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: KLHL25
product: kelch like family member 25, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_019983666.1
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: join(16093992..16094094,16109395..16111192,16123405..16125019)
location: region:16093992-16125019:1
so has part: feature:16093992-16094094:1:exon
so has part: feature:16109395-16111192:1:exon
so has part: feature:16123405-16125019:1:exon

position:16093992:1
position: 16093992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16093992-16094094:1:exon

position:16094094:1
position: 16094094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16109395-16111192:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16123405-16125019:1:exon

KLHL25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kelch-like protein 25 isoform X2
translation: MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHRMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESHDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFEAVRQSDDFNSLSKDTLLDLVSSDELEAEDERVVFEAVLQWVRHDLEQRKAHLPELLRGVRLALLPSDCLKEAASGDALLMADERTRLLVDEALRCKTRILQNDGVVTSPCARPRRAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGXHTSLAGVFPASPSVSLKQVEKYDPGANKWTMVAPLRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCYDPSENRWSIKAECPQPWRYTAAAVLGSQIFIMGGDTEFTAASAYRFDCESNQWTRIGDMTAKRMSCHALASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCVTTVPYSLIPTAFVSTWKHLPA
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: 16109406..16111175
location: region:16109406-16111175:1
so has part: feature:16109406-16111175:1:exon

XP_019839223.1
type: Protein
SIO_000068: ncbiprotein

position:16109406:1
position: 16109406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16109406-16111175:1:exon

KLHL25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kelch-like protein 25 isoform X2
translation: MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHRMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESHDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFEAVRQSDDFNSLSKDTLLDLVSSDELEAEDERVVFEAVLQWVRHDLEQRKAHLPELLRGVRLALLPSDCLKEAASGDALLMADERTRLLVDEALRCKTRILQNDGVVTSPCARPRRAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGXHTSLAGVFPASPSVSLKQVEKYDPGANKWTMVAPLRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCYDPSENRWSIKAECPQPWRYTAAAVLGSQIFIMGGDTEFTAASAYRFDCESNQWTRIGDMTAKRMSCHALASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCVTTVPYSLIPTAFVSTWKHLPA
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: 16109406..16111175
location: region:16109406-16111175:1
so has part: feature:16109406-16111175:1:exon

XP_019839224.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16109406-16111175:1:exon

KLHL25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kelch-like protein 25 isoform X2
translation: MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHRMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESHDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFEAVRQSDDFNSLSKDTLLDLVSSDELEAEDERVVFEAVLQWVRHDLEQRKAHLPELLRGVRLALLPSDCLKEAASGDALLMADERTRLLVDEALRCKTRILQNDGVVTSPCARPRRAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGXHTSLAGVFPASPSVSLKQVEKYDPGANKWTMVAPLRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCYDPSENRWSIKAECPQPWRYTAAAVLGSQIFIMGGDTEFTAASAYRFDCESNQWTRIGDMTAKRMSCHALASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCVTTVPYSLIPTAFVSTWKHLPA
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: 16109406..16111175
location: region:16109406-16111175:1
so has part: feature:16109406-16111175:1:exon

XP_019839225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16109406-16111175:1:exon

KLHL25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kelch-like protein 25 isoform X2
translation: MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHRMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESHDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFEAVRQSDDFNSLSKDTLLDLVSSDELEAEDERVVFEAVLQWVRHDLEQRKAHLPELLRGVRLALLPSDCLKEAASGDALLMADERTRLLVDEALRCKTRILQNDGVVTSPCARPRRAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGXHTSLAGVFPASPSVSLKQVEKYDPGANKWTMVAPLRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCYDPSENRWSIKAECPQPWRYTAAAVLGSQIFIMGGDTEFTAASAYRFDCESNQWTRIGDMTAKRMSCHALASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCVTTVPYSLIPTAFVSTWKHLPA
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: 16109406..16111175
location: region:16109406-16111175:1
so has part: feature:16109406-16111175:1:exon

XP_019839226.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16109406-16111175:1:exon

KLHL25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: KLHL25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kelch-like protein 25 isoform X2
translation: MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHRMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESHDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFEAVRQSDDFNSLSKDTLLDLVSSDELEAEDERVVFEAVLQWVRHDLEQRKAHLPELLRGVRLALLPSDCLKEAASGDALLMADERTRLLVDEALRCKTRILQNDGVVTSPCARPRRAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPRKEFSASAIGCKVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGXHTSLAGVFPASPSVSLKQVEKYDPGANKWTMVAPLRDGVSNAAVVSAKLKLFVFGGTSIHRDMVSKVQCYDPSENRWSIKAECPQPWRYTAAAVLGSQIFIMGGDTEFTAASAYRFDCESNQWTRIGDMTAKRMSCHALASGNKLYVVGGYFGTQRCKTLDCYDPTSDTWNCVTTVPYSLIPTAFVSTWKHLPA
SIO_010081: KLHL25
subclass of: SO_0000673
so part of: KLHL25
location: 16109406..16111175
location: region:16109406-16111175:1
so has part: feature:16109406-16111175:1:exon

XP_019839227.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16109406-16111175:1:exon

LOC109575136
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(16150265..16180715)
location: region:16150265-16180715:-1
so has part: feature:16150265-16180715:-1:exon
subclass of: SO_0000010

109575136
type: Gene
SIO_000068: ncbigene

position:16150265:-1
position: 16150265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16180715:-1
position: 16180715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16150265-16180715:-1:exon

LOC109575136
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575136
product: A-kinase anchor protein 13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 86 ESTs, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_019983182.1
SIO_010081: LOC109575136
subclass of: SO_0000673
so part of: LOC109575136
location: complement(join(16150265..16154739,16155832..16156159,16157681..16158103,16159126..16159176,16161727..16161771,16162231..16162301,16162991..16163228,16171036..16171162,16171261..16171442,16172141..16172217,16175643..16175891,16176972..16177089,16177203..16177328,16178945..16179195,16179746..16179898,16180505..16180715))
location: region:16150265-16180715:-1
so has part: feature:16180505-16180715:-1:exon
so has part: feature:16179746-16179898:-1:exon
so has part: feature:16178945-16179195:-1:exon
so has part: feature:16177203-16177328:-1:exon
so has part: feature:16176972-16177089:-1:exon
so has part: feature:16175643-16175891:-1:exon
so has part: feature:16172141-16172217:-1:exon
so has part: feature:16171261-16171442:-1:exon
so has part: feature:16171036-16171162:-1:exon
so has part: feature:16162991-16163228:-1:exon
so has part: feature:16162231-16162301:-1:exon
so has part: feature:16161727-16161771:-1:exon
so has part: feature:16159126-16159176:-1:exon
so has part: feature:16157681-16158103:-1:exon
so has part: feature:16155832-16156159:-1:exon
so has part: feature:16150265-16154739:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16180505-16180715:-1:exon

position:16180505:-1
position: 16180505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16179746-16179898:-1:exon

position:16179746:-1
position: 16179746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16179898:-1
position: 16179898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16178945-16179195:-1:exon

position:16178945:-1
position: 16178945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16179195:-1
position: 16179195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:16177203-16177328:-1:exon

position:16177203:-1
position: 16177203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16177328:-1
position: 16177328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:16176972-16177089:-1:exon

position:16176972:-1
position: 16176972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16177089:-1
position: 16177089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:16175643-16175891:-1:exon

position:16175643:-1
position: 16175643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16175891:-1
position: 16175891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:16172141-16172217:-1:exon

position:16172141:-1
position: 16172141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16172217:-1
position: 16172217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:16171261-16171442:-1:exon

position:16171261:-1
position: 16171261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16171442:-1
position: 16171442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:16171036-16171162:-1:exon

position:16171036:-1
position: 16171036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16171162:-1
position: 16171162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:16162991-16163228:-1:exon

position:16162991:-1
position: 16162991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16163228:-1
position: 16163228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:16162231-16162301:-1:exon

position:16162231:-1
position: 16162231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16162301:-1
position: 16162301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:16161727-16161771:-1:exon

position:16161727:-1
position: 16161727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16161771:-1
position: 16161771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:16159126-16159176:-1:exon

position:16159126:-1
position: 16159126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16159176:-1
position: 16159176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:16157681-16158103:-1:exon

position:16157681:-1
position: 16157681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16158103:-1
position: 16158103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:16155832-16156159:-1:exon

position:16155832:-1
position: 16155832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16156159:-1
position: 16156159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:16150265-16154739:-1:exon

position:16154739:-1
position: 16154739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109575136
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9915
gene: LOC109575136
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: A-kinase anchor protein 13-like
translation: MSFCSFSELCNHGFSEYTQQYVFLSLPRVGNDENISNTWKFLSHSTDSLNKISKVNESTESLTDEGVGTDMNEGQLMGDFETESKQLEAESWSQIVDSKFLKQHKKDVVKRQEVIYELMQTEFHHLRTLKIMSDVYSRGMMADLLFEQQMVEKLFPCLDELISIHSQFFQRILERKKDSLVDKSEKNFLIKRIGDVLVQQFSGENAERLKMTYGKFCGQHNQSVNYFKDLHTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQQDLTQSLGLVKDVISAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDGSVFLKSATGRLKEVQAVLLTDILVFLQEKDQKYVFASLDQKSTVISLKKLIVREVAHEEKGLFLISMGIKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDTKARELKGEAGGSGPRACQGSGIQCVDQEVFLFTLQEMSVLCASCLPVEILQGLVSGSLRGSLGQVVSSPAEQXGMVGPVSLPRRAETFGGFDSHQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANLVFMHKRNSEQVIQSVVHLHELLSTLQGVVLQQDSYIEDQKLLLSERALTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHQEEKRRHEREWESRERALQEREARLAQREDELRRSCQDLEREREELQQRKGAYQGDLERLRAAQRQLEREQEQLRRDSERLSQVSYQNTKLLRIPSFSPNPEETPSPPAPSIAKSGSLDSELSVSPKRNSISRTHKEKGPFHMLSSASQTNKAPEAQSQTPVSTSTRLFGLTKPKEKKEKKKKGKGSRSQPGDGLASEVPAEGEEIIC
SIO_010081: LOC109575136
subclass of: SO_0000673
so part of: LOC109575136
location: complement(join(16154690..16154739,16155832..16156159,16157681..16158103,16159126..16159176,16161727..16161771,16162231..16162301,16162991..16163228,16171036..16171162,16171261..16171442,16172141..16172217,16175643..16175891,16176972..16177089,16177203..16177328,16178945..16179195,16179746..16179898,16180505..16180700))
location: region:16154690-16180700:-1
so has part: feature:16180505-16180700:-1:exon
so has part: feature:16179746-16179898:-1:exon
so has part: feature:16178945-16179195:-1:exon
so has part: feature:16177203-16177328:-1:exon
so has part: feature:16176972-16177089:-1:exon
so has part: feature:16175643-16175891:-1:exon
so has part: feature:16172141-16172217:-1:exon
so has part: feature:16171261-16171442:-1:exon
so has part: feature:16171036-16171162:-1:exon
so has part: feature:16162991-16163228:-1:exon
so has part: feature:16162231-16162301:-1:exon
so has part: feature:16161727-16161771:-1:exon
so has part: feature:16159126-16159176:-1:exon
so has part: feature:16157681-16158103:-1:exon
so has part: feature:16155832-16156159:-1:exon
so has part: feature:16154690-16154739:-1:exon

XP_019838741.1
type: Protein
SIO_000068: ncbiprotein

position:16154690:-1
position: 16154690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16180700:-1
position: 16180700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16180505-16180700:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:16179746-16179898:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:16178945-16179195:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:16177203-16177328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:16176972-16177089:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:16175643-16175891:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:16172141-16172217:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:16171261-16171442:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:16171036-16171162:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:16162991-16163228:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:16162231-16162301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:16161727-16161771:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:16159126-16159176:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:16157681-16158103:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:16155832-16156159:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:16154690-16154739:-1:exon

LOC109575497
type: Gene
subclass of: SO_0000704
RO_0002162: 9915
gene: LOC109575497
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 16528211..16709801
location: region:16528211-16709801:1
so has part: feature:16528211-16709801:1:exon
subclass of: SO_0000010

109575497
type: Gene
SIO_000068: ncbigene

position:16528211:1
position: 16528211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16709801:1
position: 16709801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16528211-16709801:1:exon

LOC109575497
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9915
gene: LOC109575497
product: cytosolic carboxypeptidase 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 100 samples with support for all annotated introns
transcript id: XM_019983677.1
SIO_010081: LOC109575497
subclass of: SO_0000673
so part of: LOC109575497
location: join(16528211..16528565,16596984..16597047,16599448..16599594,16604000..16604131,16613033..16613126,16660010..16660047,16688008..16688216,16697657..16697822,16699246..16699313,16705270..16705386,16706408..16706988,16709371..16709454,16709693..16709801)
location: region:16528211-16709801:1
so has part: feature:16528211-16528565:1:exon
so has part: feature:16596984-16597047:1:exon
so has part: feature:16599448-16599594:1:exon
so has part: feature:16604000-16604131:1:exon
so has part: feature:16613033-16613126:1:exon
so has part: feature:16660010-16660047:1:exon
so has part: feature:16688008-16688216:1:exon
so has part: feature:16697657-16697822:1:exon
so has part: feature:16699246-16699313:1:exon
so has part: feature:16705270-16705386:1:exon
so has part: feature:16706408-16706988:1:exon
so has part: feature:16709371-16709454:1:exon
so has part: feature:16709693-16709801:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16528211-16528565:1:exon