Bos taurus isolate L1 Dominette 01449 registration number 42190680 breed Hereford chromosome 28, ARS-UCD1.2, whole genome shotgun sequence.
type: Entry
definition: Bos taurus isolate L1 Dominette 01449 registration number 42190680 breed Hereford chromosome 28, ARS-UCD1.2, whole genome shotgun sequence.
sequence version: NC_037355.1
sequence date: 2018-05-11
sequence: sequence
division: CON
label: NC_037355.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA450837
dblink: SAMN03145444
keyword: WGS
keyword: RefSeq
source: Bos taurus (cattle)
organism: Bos taurus
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM008195.2.\nAssembly name: ARS-UCD1.2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the USDA ARS on 2018/04/11. The\noriginal whole-genome shotgun project has the accession\nNKLS00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: USDA ARS\nAssembly Date :: DEC-2017\nAssembly Method :: Falcon v. FEB-2016\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 80.0x\nSequencing Technology :: PacBio; Illumina NextSeq 500; Illumina\n HiSeq; Illumina GAII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Bos taurus Annotation Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 45940150
topology: linear
so has quality: SO_0000987
location: 1..45940150
location: region:1-45940150:1
RO_0002162: 9913

NC_037355
type: RefSeq
SIO_000068: refseq

PRJNA450837
type: BioProject
SIO_000068: bioproject

SAMN03145444
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45940150:1
position: 45940150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-45940150:1:source
so part of: sequence
organism: Bos taurus
mol type: genomic DNA
isolate: L1 Dominette 01449 registration number 42190680
chromosome: 28
sex: female
tissue type: left lung
breed: Hereford

9913
type: Taxonomy
SIO_000068: taxonomy

LOC787801
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC787801
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 53309..54248
location: region:53309-54248:1
so has part: feature:53309-54248:1:exon

787801
type: Gene
SIO_000068: ncbigene

position:53309:1
position: 53309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:54248:1
position: 54248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53309-54248:1:exon

LOC787801
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC787801
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC787801
subclass of: SO_0000673
so part of: LOC787801
location: 53309..54248
location: region:53309-54248:1
so has part: feature:53309-54248:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:53309-54248:1:exon

OR5D14
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: OR5D14
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 54661..74395
location: region:54661-74395:1
so has part: feature:54661-74395:1:exon
subclass of: SO_0000010

513575
type: Gene
SIO_000068: ncbigene

position:54661:1
position: 54661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74395:1
position: 74395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54661-74395:1:exon

OR5D14
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: OR5D14
product: olfactory receptor, family 5, subfamily D, member 14
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
transcript id: XM_010800806.2
SIO_010081: OR5D14
subclass of: SO_0000673
so part of: OR5D14
location: join(54661..54762,73412..74395)
location: region:54661-74395:1
so has part: feature:54661-54762:1:exon
so has part: feature:73412-74395:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54661-54762:1:exon

position:54762:1
position: 54762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:73412-74395:1:exon

position:73412:1
position: 73412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OR5D14
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: OR5D14
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 5D14
translation: MEVLWVNSVPQISMSPRTQNVTLFENKIFADVIKKNSLLPSFLFKGIIVMTARNMSLETTFALLGFTDYPELQIPLFLVFLIMYIITVVGNLGMIVIIKINPKFHNPMYFFLSHLSFVDFCYSSIVTPKLLENLVMADKSIFYTSCMLQYFLSCTAVVTESFLLAMMAYDRFVAICNPLLYTVVMSQRLCALLVSGSYLWGMFGPLVLLCYALQLSFSGHTVINHFFCEYTALIAVSSSNTHIPHLLLFTFATFNEVSTLLIILTSYVFIFVTVLNIRSASGRRKAFSTCASHLTAITIFHGTILSLYCVPNSKNSRQTVKVASVFYTVVNPMLNPLIYSLRNKDVKDAFQKLIDTKASFH
SIO_010081: OR5D14
subclass of: SO_0000673
so part of: OR5D14
location: join(54661..54762,73412..74395)
location: region:54661-74395:1
so has part: feature:54661-54762:1:exon
so has part: feature:73412-74395:1:exon

XP_010799108.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:54661-54762:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:73412-74395:1:exon

LOC787835
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC787835
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 79706..81931
location: region:79706-81931:1
so has part: feature:79706-81931:1:exon

787835
type: Gene
SIO_000068: ncbigene

position:79706:1
position: 79706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81931:1
position: 81931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79706-81931:1:exon

LOC787835
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC787835
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
pseudo: true
SIO_010081: LOC787835
subclass of: SO_0000673
so part of: LOC787835
location: 79706..80218
location: region:79706-80218:1
so has part: feature:79706-80218:1:exon

position:80218:1
position: 80218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79706-80218:1:exon

LOC787835
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC787835
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
pseudo: true
SIO_010081: LOC787835
subclass of: SO_0000673
so part of: LOC787835
location: 81476..81931
location: region:81476-81931:1
so has part: feature:81476-81931:1:exon

position:81476:1
position: 81476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81476-81931:1:exon

LOC112444721
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444721
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(89857..143959)
location: region:89857-143959:-1
so has part: feature:89857-143959:-1:exon

112444721
type: Gene
SIO_000068: ncbigene

position:89857:-1
position: 89857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143959:-1
position: 143959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89857-143959:-1:exon

LOC112444721
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC112444721
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC112444721
subclass of: SO_0000673
so part of: LOC112444721
location: complement(89857..90617)
location: region:89857-90617:-1
so has part: feature:89857-90617:-1:exon

position:90617:-1
position: 90617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:89857-90617:-1:exon

LOC787869
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC787869
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 96434..97370
location: region:96434-97370:1
so has part: feature:96434-97370:1:exon
subclass of: SO_0000010

787869
type: Gene
SIO_000068: ncbigene

position:96434:1
position: 96434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:97370:1
position: 97370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:96434-97370:1:exon

LOC787869
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC787869
product: olfactory receptor 5L2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
transcript id: XM_015459076.2
SIO_010081: LOC787869
subclass of: SO_0000673
so part of: LOC787869
location: 96434..97370
location: region:96434-97370:1
so has part: feature:96434-97370:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:96434-97370:1:exon

LOC787869
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC787869
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: olfactory receptor 5L2-like
translation: MDEENCTAVTDFILLGFSDAPELRLFLFLLFLSIYGVTVWGNLGMIALIQVSSRLHTPMYFFLSHLSFVDFCYSMISTPKMIANILKEDKVISFLELTVQFYLFCTSVVTEVILLAVMAYDRFVAICDPLLYMVTMSRNLCMELVSCCYLNGTVCSVIHLCLDLQIPSYRSNVINHFFCDIPLLLSLACSDVTVNQLVLYTVATFSEIITSVIILISYLFFLITILRIHSAEERCKAFYTCASHLAAIAVLQGTILIIYCWPHSGNSMDIDRVATVFYTVVIPILNPLIYSLRNKDVKEALRKVVSSKIFS
SIO_010081: LOC787869
subclass of: SO_0000673
so part of: LOC787869
location: 96434..97370
location: region:96434-97370:1
so has part: feature:96434-97370:1:exon

XP_015314562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:96434-97370:1:exon

LOC787883
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC787883
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 114079..115008
location: region:114079-115008:1
so has part: feature:114079-115008:1:exon

787883
type: Gene
SIO_000068: ncbigene

position:114079:1
position: 114079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:115008:1
position: 115008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:114079-115008:1:exon

LOC787883
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC787883
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
pseudo: true
SIO_010081: LOC787883
subclass of: SO_0000673
so part of: LOC787883
location: 114079..115008
location: region:114079-115008:1
so has part: feature:114079-115008:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:114079-115008:1:exon

LOC112444721
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC112444721
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
pseudo: true
SIO_010081: LOC112444721
subclass of: SO_0000673
so part of: LOC112444721
location: complement(143889..143959)
location: region:143889-143959:-1
so has part: feature:143889-143959:-1:exon

position:143889:-1
position: 143889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143889-143959:-1:exon

LOC531024
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC531024
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 158308..159219
location: region:158308-159219:1
so has part: feature:158308-159219:1:exon
subclass of: SO_0000010

531024
type: Gene
SIO_000068: ncbigene

position:158308:1
position: 158308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159219:1
position: 159219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158308-159219:1:exon

LOC531024
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC531024
product: olfactory receptor 4P4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_002683835.2
SIO_010081: LOC531024
subclass of: SO_0000673
so part of: LOC531024
location: 158308..159219
location: region:158308-159219:1
so has part: feature:158308-159219:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:158308-159219:1:exon

LOC531024
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC531024
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 4P4
translation: METQNNVTEFVFIGLWGNKKIELLFFFLFLLCYLAVLMGNFIIFLTITCSHLMQQPMYYFLCHLSFMDFSYTSTVIPRLITDLAAARRNISYNNCMTQIFTAHLLAGVEIFILVFMAFDHYIAIVKPLNRQSCDMLMVLSWTVGFWHSIALLLMVLKLPFCGPNQIDHYLCDVKPLLKLVCKDIHVVSILVIENSGMVVVVIFLVLVASYIVILYNLRIHSSAGRKKSLSTCSSHITVVVLFFVPCIYTYILPAGSKNKDKDISVFYTVIAPMLNPLIYTLRNMEMKIAMRKVWAKVAHSGLK
SIO_010081: LOC531024
subclass of: SO_0000673
so part of: LOC531024
location: 158308..159219
location: region:158308-159219:1
so has part: feature:158308-159219:1:exon

XP_002683881.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:158308-159219:1:exon

LOC104968693
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC104968693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 166270..196338
location: region:166270-196338:1
so has part: feature:166270-196338:1:exon
subclass of: SO_0000010

104968693
type: Gene
SIO_000068: ncbigene

position:166270:1
position: 166270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196338:1
position: 196338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166270-196338:1:exon

LOC104968693
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC104968693
product: olfactory receptor 4P4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
transcript id: XM_015460943.2
SIO_010081: LOC104968693
subclass of: SO_0000673
so part of: LOC104968693
location: join(166270..166392,195357..196102,196176..196338)
location: region:166270-196338:1
so has part: feature:166270-166392:1:exon
so has part: feature:195357-196102:1:exon
so has part: feature:196176-196338:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166270-166392:1:exon

position:166392:1
position: 166392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:195357-196102:1:exon

position:195357:1
position: 195357
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196102:1
position: 196102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:196176-196338:1:exon

position:196176:1
position: 196176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104968693
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC104968693
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 4P4-like
translation: MLNRSGECGQACFISDLAKRLSVFTIEHDVSYGFVINDFHYTIKYTSNITEFIPLGLSQNMKIKHVCFLVFLFCYIAIWMGNLLIMISITCSQLNNQPMYFFLNYLALSDLCYTSTVTPKLVTDLLAESSTISYIDCMAQLSATHFFGGIEVCILTMTASDCFVAICRPLHCTVIMSRHRRCAMVSACCAGAFLHSFPQGLLTINLPFCGPDEIDHYFCDVYPLLKLANKDTYGVGILVVANAGMMGLVIFVVVMLSYILILYTIKPYPTESWYKALSTCSSHITVVVFFFAPTFFIYIRLATTFPEEKVFALFYIIIPPMFNPLIYTLRNAEMKNALRKVWC
SIO_010081: LOC104968693
subclass of: SO_0000673
so part of: LOC104968693
location: join(166270..166392,195357..196102,196176..196338)
location: region:166270-196338:1
so has part: feature:166270-166392:1:exon
so has part: feature:195357-196102:1:exon
so has part: feature:196176-196338:1:exon

XP_015316429.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166270-166392:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:195357-196102:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:196176-196338:1:exon

LOC100297284
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC100297284
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(198977..199787)
location: region:198977-199787:-1
so has part: feature:198977-199787:-1:exon

100297284
type: Gene
SIO_000068: ncbigene

position:198977:-1
position: 198977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199787:-1
position: 199787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198977-199787:-1:exon

LOC100297284
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100297284
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC100297284
subclass of: SO_0000673
so part of: LOC100297284
location: complement(198977..199787)
location: region:198977-199787:-1
so has part: feature:198977-199787:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:198977-199787:-1:exon

LOC787953
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC787953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(209607..210632)
location: region:209607-210632:-1
so has part: feature:209607-210632:-1:exon

787953
type: Gene
SIO_000068: ncbigene

position:209607:-1
position: 209607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:210632:-1
position: 210632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209607-210632:-1:exon

LOC787953
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC787953
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC787953
subclass of: SO_0000673
so part of: LOC787953
location: complement(209607..209771)
location: region:209607-209771:-1
so has part: feature:209607-209771:-1:exon

position:209771:-1
position: 209771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209607-209771:-1:exon

LOC787953
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC787953
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC787953
subclass of: SO_0000673
so part of: LOC787953
location: complement(209856..210632)
location: region:209856-210632:-1
so has part: feature:209856-210632:-1:exon

position:209856:-1
position: 209856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:209856-210632:-1:exon

LOC112444722
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444722
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 225707..227368
location: region:225707-227368:1
so has part: feature:225707-227368:1:exon
subclass of: SO_0000010

112444722
type: Gene
SIO_000068: ncbigene

position:225707:1
position: 225707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227368:1
position: 227368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225707-227368:1:exon

LOC112444722
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC112444722
product: endogenous retrovirus group K member 6 Gag polyprotein-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_024986810.1
SIO_010081: LOC112444722
subclass of: SO_0000673
so part of: LOC112444722
location: 225707..227368
location: region:225707-227368:1
so has part: feature:225707-227368:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:225707-227368:1:exon

LOC112444722
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC112444722
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:226586..226588,aa:OTHER)
transl except: (pos:226892..226894,aa:OTHER)
product: LOW QUALITY PROTEIN: endogenous retrovirus group K member 6 Gag polyprotein-like
translation: MGQGSSCQLFVHMLKTMLKGRGIHVNKLHLEKFLLFIEDVCSWFPEEGTVSLETWKKVGKQLQTYYSLHGPNRVPVDAFSLWTLIRDCLDPEHEGHKTQTALRDSTEPEVAEPSTPPPESLYAVSEGTACKAGGNDDVLSSDEQEELNEQAAQYHREDMPWEMMVNMQPPSGKGELKHSGLSEEQLENLIQKIVIAVKKYAQGDSHSSQPLPPGYPPSVLAGLNPPPPFIELQELISIPASLPGENIKIRSEILLSPLQQAIKXANEEGEYIPGFSGIYPVFENAQQQRYYKPLPFKQLKEFKMACAQYGPTAPFTQAIIEALGNQNLPPNDWKQVARACLSGRDYLLWKSEFAEQCGITADISQXQGLNTTYEMMVGGGDYRDTNNQLNYLPGAYPQISAAALQAWKRLPNSDKKTEDLSKILQGPDEPYQDFVARLLEAISKMIGDEQAGMVLAKQLAYENANLACQAALRPYRKKGGLSDYVRICAEISPSYVQGITLAAALQGKTVKEVLYQQQKRDKG
SIO_010081: LOC112444722
subclass of: SO_0000673
so part of: LOC112444722
location: 225797..227368
location: region:225797-227368:1
so has part: feature:225797-227368:1:exon

XP_024842578.1
type: Protein
SIO_000068: ncbiprotein

position:225797:1
position: 225797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:225797-227368:1:exon

LOC112444723
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444723
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 237518..242149
location: region:237518-242149:1
so has part: feature:237518-242149:1:exon

112444723
type: Gene
SIO_000068: ncbigene

position:237518:1
position: 237518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:242149:1
position: 242149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237518-242149:1:exon

LOC112444723
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC112444723
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC112444723
subclass of: SO_0000673
so part of: LOC112444723
location: 237518..237585
location: region:237518-237585:1
so has part: feature:237518-237585:1:exon

position:237585:1
position: 237585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:237518-237585:1:exon

LOC112444723
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC112444723
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC112444723
subclass of: SO_0000673
so part of: LOC112444723
location: 241202..242149
location: region:241202-242149:1
so has part: feature:241202-242149:1:exon

position:241202:1
position: 241202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:241202-242149:1:exon

LOC513384
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC513384
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 277568..278509
location: region:277568-278509:1
so has part: feature:277568-278509:1:exon
subclass of: SO_0000010

513384
type: Gene
SIO_000068: ncbigene

position:277568:1
position: 277568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:278509:1
position: 278509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:277568-278509:1:exon

LOC513384
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC513384
product: olfactory receptor 5D18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
transcript id: XM_002698773.1
SIO_010081: LOC513384
subclass of: SO_0000673
so part of: LOC513384
location: 277568..278509
location: region:277568-278509:1
so has part: feature:277568-278509:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:277568-278509:1:exon

LOC513384
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC513384
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 5D18
translation: MFLSERNKSGATFTVLGFSDYPELQVPLFLIFFTIYSVTVVGNLGMIVTIKINPKLHTPMYFFLSHPSFVDFCYSSIIARKTMVNLMVEDRTISFVVCVIQVFFFCTFVVTESFLLAVMAYDLFVAICNSLLYMVAMSPRLCAMLVVGSFAWGTTYSLAFTFSVSKLPFCGFNTINHFFYEFSSLLSVSCSDTYLNQLLLFIFATFNEVSTPFIILLSYVFIVVTIFKIHSTCGRRKAFSTCASCLTAISILTSTIVFLYCVPNSTTSRHTVKVASVFYTVVIPMLNPLIYSLRNKDVNKTVSKIVGSKLFSY
SIO_010081: LOC513384
subclass of: SO_0000673
so part of: LOC513384
location: 277568..278509
location: region:277568-278509:1
so has part: feature:277568-278509:1:exon

XP_002698819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:277568-278509:1:exon

OR5L2
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: OR5L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 289741..290691
location: region:289741-290691:1
so has part: feature:289741-290691:1:exon
subclass of: SO_0000010

512400
type: Gene
SIO_000068: ncbigene

position:289741:1
position: 289741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:290691:1
position: 290691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:289741-290691:1:exon

OR5L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: OR5L2
product: olfactory receptor, family 5, subfamily L, member 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
transcript id: XM_002698777.1
SIO_010081: OR5L2
subclass of: SO_0000673
so part of: OR5L2
location: 289741..290691
location: region:289741-290691:1
so has part: feature:289741-290691:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:289741-290691:1:exon

OR5L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: OR5L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 5L1
translation: MDEENCTAVSDFILLGFSDAPELRVFLFLLFLSIYGVTVLGNLGMIVLIQVSSGLPTPMYFFLSHLSFVDFCYSMISTPKMLANILNEDKAISFLECTVQFYLFCTFVVTEVILLAVMAYDHFVAICDSQLYMVTLSRDLYVELVSCCYLSGAMCSLIHLCLALQIPSYRLNMINHFFCDLPSLLSLACSDMIVNQLMLYIGATFYKIIIIPVILTPYLCILITILRMCSAEGRCNAFSTCASHLRAIAILQGTILFIYCQPHSGNIMGTDKVTTVFYTVVIPMPNPLIYSLRNKDVKETLRKVVSSKILSYRIFS
SIO_010081: OR5L2
subclass of: SO_0000673
so part of: OR5L2
location: 289741..290691
location: region:289741-290691:1
so has part: feature:289741-290691:1:exon

XP_002698823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:289741-290691:1:exon

LOC107131918
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC107131918
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(311297..313416)
location: region:311297-313416:-1
so has part: feature:311297-313416:-1:exon

107131918
type: Gene
SIO_000068: ncbigene

position:311297:-1
position: 311297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313416:-1
position: 313416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311297-313416:-1:exon

LOC107131918
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC107131918
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC107131918
subclass of: SO_0000673
so part of: LOC107131918
location: complement(311297..312018)
location: region:311297-312018:-1
so has part: feature:311297-312018:-1:exon

position:312018:-1
position: 312018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311297-312018:-1:exon

LOC107131918
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC107131918
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
pseudo: true
SIO_010081: LOC107131918
subclass of: SO_0000673
so part of: LOC107131918
location: complement(313197..313416)
location: region:313197-313416:-1
so has part: feature:313197-313416:-1:exon

position:313197:-1
position: 313197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313197-313416:-1:exon

OR5AS1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: OR5AS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(327515..328453)
location: region:327515-328453:-1
so has part: feature:327515-328453:-1:exon
subclass of: SO_0000010

787386
type: Gene
SIO_000068: ncbigene

position:327515:-1
position: 327515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:328453:-1
position: 328453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:327515-328453:-1:exon

OR5AS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: OR5AS1
product: olfactory receptor, family 5, subfamily AS, member 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
transcript id: XM_002698775.1
SIO_010081: OR5AS1
subclass of: SO_0000673
so part of: OR5AS1
location: complement(327515..328453)
location: region:327515-328453:-1
so has part: feature:327515-328453:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:327515-328453:-1:exon

OR5AS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: OR5AS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 5AS1
translation: MLENNCTMPIEFLLVGFTDYLPLRVTLFLVFLIVYTLTMVGNVGLIILININSSLQTPMYYFLSNLSFLDISYSTAITPKMLVNFLASKKSISLSGCVLQMFFFGCFADAECLILAAMAYDRYAAICNPLLYSALVSQRVCVCCIVLAYFSGGVTSMVHVCLTFRLPFCGSNIVNHFFCDIPPLLALSCTDTYINELLLFALCGFIQTSTFVVIFISYFCILLTVLSIKSSGGRSKTFSTCASHLLAITLFYGTLLFMYLRPTTSYSPDTDKVVAVFYTVVFPMFNPIIYSFRNKDVKYALRKLLDRNGTFK
SIO_010081: OR5AS1
subclass of: SO_0000673
so part of: OR5AS1
location: complement(327515..328453)
location: region:327515-328453:-1
so has part: feature:327515-328453:-1:exon

XP_002698821.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:327515-328453:-1:exon

LOC100138842
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC100138842
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 370899..371835
location: region:370899-371835:1
so has part: feature:370899-371835:1:exon

100138842
type: Gene
SIO_000068: ncbigene

position:370899:1
position: 370899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371835:1
position: 371835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:370899-371835:1:exon

LOC100138842
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100138842
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC100138842
subclass of: SO_0000673
so part of: LOC100138842
location: 370899..371835
location: region:370899-371835:1
so has part: feature:370899-371835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:370899-371835:1:exon

LOC782626
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC782626
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 386075..388705
location: region:386075-388705:1
so has part: feature:386075-388705:1:exon

782626
type: Gene
SIO_000068: ncbigene

position:386075:1
position: 386075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388705:1
position: 388705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:386075-388705:1:exon

LOC782626
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC782626
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC782626
subclass of: SO_0000673
so part of: LOC782626
location: 386075..386100
location: region:386075-386100:1
so has part: feature:386075-386100:1:exon

position:386100:1
position: 386100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:386075-386100:1:exon

LOC782626
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC782626
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC782626
subclass of: SO_0000673
so part of: LOC782626
location: 387971..388705
location: region:387971-388705:1
so has part: feature:387971-388705:1:exon

position:387971:1
position: 387971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:387971-388705:1:exon

LOC782694
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC782694
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 402745..403656
location: region:402745-403656:1
so has part: feature:402745-403656:1:exon

782694
type: Gene
SIO_000068: ncbigene

position:402745:1
position: 402745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403656:1
position: 403656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:402745-403656:1:exon

LOC782694
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC782694
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
pseudo: true
SIO_010081: LOC782694
subclass of: SO_0000673
so part of: LOC782694
location: 402745..403656
location: region:402745-403656:1
so has part: feature:402745-403656:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:402745-403656:1:exon

LOC782732
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC782732
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 411107..423290
location: region:411107-423290:1
so has part: feature:411107-423290:1:exon

782732
type: Gene
SIO_000068: ncbigene

position:411107:1
position: 411107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:423290:1
position: 423290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411107-423290:1:exon

LOC782732
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC782732
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC782732
subclass of: SO_0000673
so part of: LOC782732
location: 411107..411165
location: region:411107-411165:1
so has part: feature:411107-411165:1:exon

position:411165:1
position: 411165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411107-411165:1:exon

LOC782732
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC782732
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC782732
subclass of: SO_0000673
so part of: LOC782732
location: 422368..423290
location: region:422368-423290:1
so has part: feature:422368-423290:1:exon

position:422368:1
position: 422368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422368-423290:1:exon

LOC782769
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC782769
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 441924..442835
location: region:441924-442835:1
so has part: feature:441924-442835:1:exon

782769
type: Gene
SIO_000068: ncbigene

position:441924:1
position: 441924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442835:1
position: 442835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:441924-442835:1:exon

LOC782769
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC782769
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pseudo: true
SIO_010081: LOC782769
subclass of: SO_0000673
so part of: LOC782769
location: 441924..442835
location: region:441924-442835:1
so has part: feature:441924-442835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:441924-442835:1:exon

LOC100336878
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC100336878
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 466098..468155
location: region:466098-468155:1
so has part: feature:466098-468155:1:exon

100336878
type: Gene
SIO_000068: ncbigene

position:466098:1
position: 466098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:468155:1
position: 468155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:466098-468155:1:exon

LOC100336878
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100336878
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC100336878
subclass of: SO_0000673
so part of: LOC100336878
location: 466098..466388
location: region:466098-466388:1
so has part: feature:466098-466388:1:exon

position:466388:1
position: 466388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:466098-466388:1:exon

LOC100336878
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100336878
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC100336878
subclass of: SO_0000673
so part of: LOC100336878
location: 467207..467721
location: region:467207-467721:1
so has part: feature:467207-467721:1:exon

position:467207:1
position: 467207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:467721:1
position: 467721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:467207-467721:1:exon

LOC100336878
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100336878
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC100336878
subclass of: SO_0000673
so part of: LOC100336878
location: 467996..468155
location: region:467996-468155:1
so has part: feature:467996-468155:1:exon

position:467996:1
position: 467996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:467996-468155:1:exon

LOC100299529
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC100299529
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 473577..474508
location: region:473577-474508:1
so has part: feature:473577-474508:1:exon

100299529
type: Gene
SIO_000068: ncbigene

position:473577:1
position: 473577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:474508:1
position: 474508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:473577-474508:1:exon

LOC100299529
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100299529
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
pseudo: true
SIO_010081: LOC100299529
subclass of: SO_0000673
so part of: LOC100299529
location: 473577..474508
location: region:473577-474508:1
so has part: feature:473577-474508:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:473577-474508:1:exon

RHOU
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: RHOU
note: ras homolog family member U; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 697339..706885
location: region:697339-706885:1
so has part: feature:697339-706885:1:exon
subclass of: SO_0000010

781044
type: Gene
SIO_000068: ncbigene

position:697339:1
position: 697339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706885:1
position: 706885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:697339-706885:1:exon

RHOU
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: RHOU
product: ras homolog family member U
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001098147.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 4 substitutions, 2 non-frameshifting indels compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001098147.1
SIO_010081: RHOU
subclass of: SO_0000673
so part of: RHOU
location: join(697339..697748,699270..699328,704602..706885)
location: region:697339-706885:1
so has part: feature:697339-697748:1:exon
so has part: feature:699270-699328:1:exon
so has part: feature:704602-706885:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:697339-697748:1:exon

position:697748:1
position: 697748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:699270-699328:1:exon

position:699270:1
position: 699270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:699328:1
position: 699328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:704602-706885:1:exon

position:704602:1
position: 704602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RHOU
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: RHOU
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: rho-related GTP-binding protein RhoU
translation: MPPQQGDPAFPGRCEAPPVPPRRERGVRGPGAPGGRGRAGGPEGHGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAARLCAEEIKATSYIECSALTQKNLKEVFDAAIVAGIQYSDSQQQPKKSKSRTPDKMKTLSKSWWKKYCCFV
SIO_010081: RHOU
subclass of: SO_0000673
so part of: RHOU
location: join(697496..697748,699270..699328,704602..705057)
location: region:697496-705057:1
so has part: feature:697496-697748:1:exon
so has part: feature:699270-699328:1:exon
so has part: feature:704602-705057:1:exon

NP_001091616.1
type: Protein
SIO_000068: ncbiprotein

position:697496:1
position: 697496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:705057:1
position: 705057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:697496-697748:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:699270-699328:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:704602-705057:1:exon

RAB4A
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
note: RAB4A, member RAS oncogene family; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 1197453..1268190
location: region:1197453-1268190:1
so has part: feature:1197453-1268190:1:exon
subclass of: SO_0000010

615849
type: Gene
SIO_000068: ncbigene

position:1197453:1
position: 1197453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1268190:1
position: 1268190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197453-1268190:1:exon

RAB4A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
product: RAB4A, member RAS oncogene family
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001038685.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 8 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001038685.2
SIO_010081: RAB4A
subclass of: SO_0000673
so part of: RAB4A
location: join(1197453..1197526,1221428..1221508,1223523..1223637,1228339..1228401,1229464..1229618,1230867..1230962,1234327..1234460,1238940..1239545)
location: region:1197453-1239545:1
so has part: feature:1197453-1197526:1:exon
so has part: feature:1221428-1221508:1:exon
so has part: feature:1223523-1223637:1:exon
so has part: feature:1228339-1228401:1:exon
so has part: feature:1229464-1229618:1:exon
so has part: feature:1230867-1230962:1:exon
so has part: feature:1234327-1234460:1:exon
so has part: feature:1238940-1239545:1:exon

position:1239545:1
position: 1239545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197453-1197526:1:exon

position:1197526:1
position: 1197526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1221428-1221508:1:exon

position:1221428:1
position: 1221428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1221508:1
position: 1221508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1223523-1223637:1:exon

position:1223523:1
position: 1223523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1223637:1
position: 1223637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1228339-1228401:1:exon

position:1228339:1
position: 1228339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1228401:1
position: 1228401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1229464-1229618:1:exon

position:1229464:1
position: 1229464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1229618:1
position: 1229618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1230867-1230962:1:exon

position:1230867:1
position: 1230867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1230962:1
position: 1230962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1234327-1234460:1:exon

position:1234327:1
position: 1234327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1234460:1
position: 1234460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1238940-1239545:1:exon

position:1238940:1
position: 1238940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RAB4A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: ras-related protein Rab-4A
translation: MSQTAMSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAALRQLRSPRRAQAPSAQECGC
SIO_010081: RAB4A
subclass of: SO_0000673
so part of: RAB4A
location: join(1197496..1197526,1221428..1221508,1223523..1223637,1228339..1228401,1229464..1229618,1230867..1230962,1234327..1234442)
location: region:1197496-1234442:1
so has part: feature:1197496-1197526:1:exon
so has part: feature:1221428-1221508:1:exon
so has part: feature:1223523-1223637:1:exon
so has part: feature:1228339-1228401:1:exon
so has part: feature:1229464-1229618:1:exon
so has part: feature:1230867-1230962:1:exon
so has part: feature:1234327-1234442:1:exon

NP_001033774.1
type: Protein
SIO_000068: ncbiprotein

position:1197496:1
position: 1197496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1234442:1
position: 1234442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197496-1197526:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1221428-1221508:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1223523-1223637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1228339-1228401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229464-1229618:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1230867-1230962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1234327-1234442:1:exon

RAB4A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
product: RAB4A, member RAS oncogene family, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 long SRA reads, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_010820402.3
SIO_010081: RAB4A
subclass of: SO_0000673
so part of: RAB4A
location: join(1212892..1213026,1221428..1221508,1223523..1223637,1228339..1228401,1229464..1229618,1230867..1230962,1234327..1234460,1267946..1268190)
location: region:1212892-1268190:1
so has part: feature:1212892-1213026:1:exon
so has part: feature:1221428-1221508:1:exon
so has part: feature:1223523-1223637:1:exon
so has part: feature:1228339-1228401:1:exon
so has part: feature:1229464-1229618:1:exon
so has part: feature:1230867-1230962:1:exon
so has part: feature:1234327-1234460:1:exon
so has part: feature:1267946-1268190:1:exon

position:1212892:1
position: 1212892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212892-1213026:1:exon

position:1213026:1
position: 1213026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1221428-1221508:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1223523-1223637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1228339-1228401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229464-1229618:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1230867-1230962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1234327-1234460:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1267946-1268190:1:exon

position:1267946:1
position: 1267946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RAB4A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
product: RAB4A, member RAS oncogene family, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 ESTs, 31 long SRA reads, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 103 samples with support for all annotated introns
transcript id: XM_005226196.4
SIO_010081: RAB4A
subclass of: SO_0000673
so part of: RAB4A
location: join(1212893..1213026,1221428..1221508,1223523..1223637,1228339..1228401,1229464..1229618,1230867..1230962,1234327..1234460,1238940..1247653)
location: region:1212893-1247653:1
so has part: feature:1212893-1213026:1:exon
so has part: feature:1221428-1221508:1:exon
so has part: feature:1223523-1223637:1:exon
so has part: feature:1228339-1228401:1:exon
so has part: feature:1229464-1229618:1:exon
so has part: feature:1230867-1230962:1:exon
so has part: feature:1234327-1234460:1:exon
so has part: feature:1238940-1247653:1:exon

position:1212893:1
position: 1212893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1247653:1
position: 1247653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212893-1213026:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1221428-1221508:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1223523-1223637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1228339-1228401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229464-1229618:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1230867-1230962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1234327-1234460:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1238940-1247653:1:exon

RAB4A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-related protein Rab-4A isoform X1
translation: MTWTLSSLGRDAGCLGVSRPCSPFGDDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAALRQLRSPRRAQAPSAQECGC
SIO_010081: RAB4A
subclass of: SO_0000673
so part of: RAB4A
location: join(1212948..1213026,1221428..1221508,1223523..1223637,1228339..1228401,1229464..1229618,1230867..1230962,1234327..1234442)
location: region:1212948-1234442:1
so has part: feature:1212948-1213026:1:exon
so has part: feature:1221428-1221508:1:exon
so has part: feature:1223523-1223637:1:exon
so has part: feature:1228339-1228401:1:exon
so has part: feature:1229464-1229618:1:exon
so has part: feature:1230867-1230962:1:exon
so has part: feature:1234327-1234442:1:exon

XP_005226253.1
type: Protein
SIO_000068: ncbiprotein

position:1212948:1
position: 1212948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212948-1213026:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1221428-1221508:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1223523-1223637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1228339-1228401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229464-1229618:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1230867-1230962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1234327-1234442:1:exon

RAB4A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: RAB4
gene: RAB4A
gene synonym: RAB4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ras-related protein Rab-4A isoform X1
translation: MTWTLSSLGRDAGCLGVSRPCSPFGDDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAALRQLRSPRRAQAPSAQECGC
SIO_010081: RAB4A
subclass of: SO_0000673
so part of: RAB4A
location: join(1212948..1213026,1221428..1221508,1223523..1223637,1228339..1228401,1229464..1229618,1230867..1230962,1234327..1234442)
location: region:1212948-1234442:1
so has part: feature:1212948-1213026:1:exon
so has part: feature:1221428-1221508:1:exon
so has part: feature:1223523-1223637:1:exon
so has part: feature:1228339-1228401:1:exon
so has part: feature:1229464-1229618:1:exon
so has part: feature:1230867-1230962:1:exon
so has part: feature:1234327-1234442:1:exon

XP_010818704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1212948-1213026:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1221428-1221508:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1223523-1223637:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1228339-1228401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1229464-1229618:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1230867-1230962:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1234327-1234442:1:exon

SPHAR
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: SPHAR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <1240134..1247657
location: region:1240134-1247657:1
so has part: feature:1240134-1247657:1:exon
subclass of: SO_0000010

101907612
type: Gene
SIO_000068: ncbigene

position:1240134:1
position: 1240134
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:1247657:1
position: 1247657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1240134-1247657:1:exon

SPHAR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SPHAR
product: S-phase response (cyclin related)
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, 19 long SRA reads, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005228571.4
SIO_010081: SPHAR
subclass of: SO_0000673
so part of: SPHAR
location: <1240134..1247657
location: region:1240134-1247657:1
so has part: feature:1240134-1247657:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1240134-1247657:1:exon

SPHAR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SPHAR
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:1240307..1240309,aa:OTHER)
transl except: (pos:1240388..1240390,aa:OTHER)
product: LOW QUALITY PROTEIN: protein SPHAR
translation: LLAQTGKFDYLYVGSCLLLLLFCFNQWSTEALQTLEVTWIKISRCNCFRYFXFCFFISXIFDFEKSEYEANSQTDLLLGPHWKNVXFSVLLTVGLQAAHF
SIO_010081: SPHAR
subclass of: SO_0000673
so part of: SPHAR
location: <1240134..1240435
location: region:1240134-1240435:1
so has part: feature:1240134-1240435:1:exon

XP_005228628.1
type: Protein
SIO_000068: ncbiprotein

position:1240435:1
position: 1240435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1240134-1240435:1:exon

CCSAP
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: CCSAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1260180..1279955)
location: region:1260180-1279955:-1
so has part: feature:1260180-1279955:-1:exon
subclass of: SO_0000010

532798
type: Gene
SIO_000068: ncbigene

position:1260180:-1
position: 1260180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1279955:-1
position: 1279955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1260180-1279955:-1:exon

CCSAP
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: CCSAP
product: centriole, cilia and spindle associated protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 ESTs, 1 long SRA read, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 96 samples with support for all annotated introns
transcript id: XR_001495316.2
SIO_010081: CCSAP
so part of: CCSAP
location: complement(join(1260180..1260912,1261152..1264034,1266142..1266407,1278985..1279955))
location: region:1260180-1279955:-1
so has part: feature:1278985-1279955:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1261152-1264034:-1:exon
so has part: feature:1260180-1260912:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1278985-1279955:-1:exon

position:1278985:-1
position: 1278985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1266142-1266407:-1:exon

position:1266142:-1
position: 1266142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1266407:-1
position: 1266407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1261152-1264034:-1:exon

position:1261152:-1
position: 1261152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1264034:-1
position: 1264034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1260180-1260912:-1:exon

position:1260912:-1
position: 1260912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCSAP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: CCSAP
product: centriole, cilia and spindle associated protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_010820404.3
SIO_010081: CCSAP
subclass of: SO_0000673
so part of: CCSAP
location: complement(join(1260180..1264034,1266142..1266407,1278985..1279395,1279818..1279910))
location: region:1260180-1279910:-1
so has part: feature:1279818-1279910:-1:exon
so has part: feature:1278985-1279395:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1260180-1264034:-1:exon

position:1279910:-1
position: 1279910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1279818-1279910:-1:exon

position:1279818:-1
position: 1279818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1278985-1279395:-1:exon

position:1279395:-1
position: 1279395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1266142-1266407:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1260180-1264034:-1:exon

CCSAP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: CCSAP
product: centriole, cilia and spindle associated protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 269 samples with support for all annotated introns
transcript id: XM_015460914.2
SIO_010081: CCSAP
subclass of: SO_0000673
so part of: CCSAP
location: complement(join(1260180..1264034,1266142..1266407,1278985..1279514))
location: region:1260180-1279514:-1
so has part: feature:1278985-1279514:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1260180-1264034:-1:exon

position:1279514:-1
position: 1279514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278985-1279514:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1266142-1266407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1260180-1264034:-1:exon

CCSAP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: CCSAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centriole, cilia and spindle-associated protein isoform X1
translation: MGPVGDRAARKGGHSGPTCGTMSPGSGVKSEYMKRYQEPRWDEYGPCYRALRHYRLGRRLLEQAHAPWLWDDWGQAGASDDSASSASSGTGAPAPQCAPASPPPPPPAEPEGRVGPEEREVEAAGDAETRDAVDAEDAALPALPVKDVKEKPERQIRMRDPEKSASSTDPQQPPSALAARGSRKTKSPQRSSTRIKEHRHPFALYGWGEKQTDTGSQKTHNVCASAPMHEIHESALRAKSRRQVEKRRLAAQRQRAHSADVEKNRRVKPASSENPWMTEYMRCYSARA
SIO_010081: CCSAP
subclass of: SO_0000673
so part of: CCSAP
location: complement(join(1263858..1264034,1266142..1266407,1278985..1279408))
location: region:1263858-1279408:-1
so has part: feature:1278985-1279408:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1263858-1264034:-1:exon

XP_015316400.1
type: Protein
SIO_000068: ncbiprotein

position:1263858:-1
position: 1263858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1279408:-1
position: 1279408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278985-1279408:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1266142-1266407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1263858-1264034:-1:exon

CCSAP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: CCSAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centriole, cilia and spindle-associated protein isoform X2
translation: MSPGSGVKSEYMKRYQEPRWDEYGPCYRALRHYRLGRRLLEQAHAPWLWDDWGQAGASDDSASSASSGTGAPAPQCAPASPPPPPPAEPEGRVGPEEREVEAAGDAETRDAVDAEDAALPALPVKDVKEKPERQIRMRDPEKSASSTDPQQPPSALAARGSRKTKSPQRSSTRIKEHRHPFALYGWGEKQTDTGSQKTHNVCASAPMHEIHESALRAKSRRQVEKRRLAAQRQRAHSADVEKNRRVKPASSENPWMTEYMRCYSARA
SIO_010081: CCSAP
subclass of: SO_0000673
so part of: CCSAP
location: complement(join(1263858..1264034,1266142..1266407,1278985..1279345))
location: region:1263858-1279345:-1
so has part: feature:1278985-1279345:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1263858-1264034:-1:exon

XP_010818706.1
type: Protein
SIO_000068: ncbiprotein

position:1279345:-1
position: 1279345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278985-1279345:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1266142-1266407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1263858-1264034:-1:exon

CCSAP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: CCSAP
product: centriole, cilia and spindle associated protein, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
transcript id: XM_005226199.4
SIO_010081: CCSAP
subclass of: SO_0000673
so part of: CCSAP
location: complement(join(1263994..1264124,1266142..1266407,1278985..1279529))
location: region:1263994-1279529:-1
so has part: feature:1278985-1279529:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1263994-1264124:-1:exon

position:1263994:-1
position: 1263994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1279529:-1
position: 1279529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278985-1279529:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1266142-1266407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1263994-1264124:-1:exon

position:1264124:-1
position: 1264124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCSAP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: CCSAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centriole, cilia and spindle-associated protein isoform X3
translation: MGPVGDRAARKGGHSGPTCGTMSPGSGVKSEYMKRYQEPRWDEYGPCYRALRHYRLGRRLLEQAHAPWLWDDWGQAGASDDSASSASSGTGAPAPQCAPASPPPPPPAEPEGRVGPEEREVEAAGDAETRDAVDAEDAALPALPVKDVKEKPERQIRMRDPEKSASSTDPQQPPSALAARGSRKTKSPQRSSTRIKEHRHPFALYGWGEKQTDTGSQKTHNVCASAPMHEVTWRKLHCEYSGKLVPKPLE
SIO_010081: CCSAP
subclass of: SO_0000673
so part of: CCSAP
location: complement(join(1264062..1264124,1266142..1266407,1278985..1279408))
location: region:1264062-1279408:-1
so has part: feature:1278985-1279408:-1:exon
so has part: feature:1266142-1266407:-1:exon
so has part: feature:1264062-1264124:-1:exon

XP_005226256.1
type: Protein
SIO_000068: ncbiprotein

position:1264062:-1
position: 1264062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1278985-1279408:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1266142-1266407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1264062-1264124:-1:exon

LOC789763
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC789763
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1351133..1351998
location: region:1351133-1351998:1
so has part: feature:1351133-1351998:1:exon

789763
type: Gene
SIO_000068: ncbigene

position:1351133:1
position: 1351133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1351998:1
position: 1351998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1351133-1351998:1:exon

LOC789763
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC789763
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC789763
subclass of: SO_0000673
so part of: LOC789763
location: 1351133..1351998
location: region:1351133-1351998:1
so has part: feature:1351133-1351998:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1351133-1351998:1:exon

ACTA1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: ACTA1
note: actin, alpha 1, skeletal muscle; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: complement(1400443..1403202)
location: region:1400443-1403202:-1
so has part: feature:1400443-1403202:-1:exon
subclass of: SO_0000010

281592
type: Gene
SIO_000068: ncbigene

position:1400443:-1
position: 1400443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1403202:-1
position: 1403202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1400443-1403202:-1:exon

ACTA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: ACTA1
product: actin, alpha 1, skeletal muscle, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 786 ESTs, 173 long SRA reads, 112 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005226192.3
SIO_010081: ACTA1
subclass of: SO_0000673
so part of: ACTA1
location: complement(join(1400443..1400835,1400922..1401103,1401199..1401390,1401492..1401653,1401757..1402081,1402187..1402327,1402422..1402556))
location: region:1400443-1402556:-1
so has part: feature:1402422-1402556:-1:exon
so has part: feature:1402187-1402327:-1:exon
so has part: feature:1401757-1402081:-1:exon
so has part: feature:1401492-1401653:-1:exon
so has part: feature:1401199-1401390:-1:exon
so has part: feature:1400922-1401103:-1:exon
so has part: feature:1400443-1400835:-1:exon

position:1402556:-1
position: 1402556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1402422-1402556:-1:exon

position:1402422:-1
position: 1402422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1402187-1402327:-1:exon

position:1402187:-1
position: 1402187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1402327:-1
position: 1402327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1401757-1402081:-1:exon

position:1401757:-1
position: 1401757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1402081:-1
position: 1402081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1401492-1401653:-1:exon

position:1401492:-1
position: 1401492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401653:-1
position: 1401653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1401199-1401390:-1:exon

position:1401199:-1
position: 1401199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401390:-1
position: 1401390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1400922-1401103:-1:exon

position:1400922:-1
position: 1400922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401103:-1
position: 1401103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1400443-1400835:-1:exon

position:1400835:-1
position: 1400835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ACTA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: ACTA1
product: actin, alpha 1, skeletal muscle
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_174225.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 2 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_174225.1
SIO_010081: ACTA1
subclass of: SO_0000673
so part of: ACTA1
location: complement(join(1400446..1400835,1400922..1401103,1401199..1401390,1401492..1401653,1401757..1402081,1402187..1402327,1403110..1403202))
location: region:1400446-1403202:-1
so has part: feature:1403110-1403202:-1:exon
so has part: feature:1402187-1402327:-1:exon
so has part: feature:1401757-1402081:-1:exon
so has part: feature:1401492-1401653:-1:exon
so has part: feature:1401199-1401390:-1:exon
so has part: feature:1400922-1401103:-1:exon
so has part: feature:1400446-1400835:-1:exon

position:1400446:-1
position: 1400446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1403110-1403202:-1:exon

position:1403110:-1
position: 1403110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1402187-1402327:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1401757-1402081:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1401492-1401653:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1401199-1401390:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1400922-1401103:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1400446-1400835:-1:exon

ACTA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: ACTA1
inference: similar to AA sequence (same species):RefSeq:NP_776650.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: actin, alpha skeletal muscle
translation: MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILRSLSTFQQMWITKQEYDEAGPSIVHRKCF
SIO_010081: ACTA1
subclass of: SO_0000673
so part of: ACTA1
location: complement(join(1400692..1400835,1400922..1401103,1401199..1401390,1401492..1401653,1401757..1402081,1402187..1402315))
location: region:1400692-1402315:-1
so has part: feature:1402187-1402315:-1:exon
so has part: feature:1401757-1402081:-1:exon
so has part: feature:1401492-1401653:-1:exon
so has part: feature:1401199-1401390:-1:exon
so has part: feature:1400922-1401103:-1:exon
so has part: feature:1400692-1400835:-1:exon

NP_776650.1
type: Protein
SIO_000068: ncbiprotein

position:1400692:-1
position: 1400692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1402315:-1
position: 1402315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1402187-1402315:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1401757-1402081:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1401492-1401653:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1401199-1401390:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1400922-1401103:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1400692-1400835:-1:exon

ACTA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: ACTA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: actin, alpha skeletal muscle isoform X1
translation: MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF
SIO_010081: ACTA1
subclass of: SO_0000673
so part of: ACTA1
location: complement(join(1400692..1400835,1400922..1401103,1401199..1401390,1401492..1401653,1401757..1402081,1402187..1402315))
location: region:1400692-1402315:-1
so has part: feature:1402187-1402315:-1:exon
so has part: feature:1401757-1402081:-1:exon
so has part: feature:1401492-1401653:-1:exon
so has part: feature:1401199-1401390:-1:exon
so has part: feature:1400922-1401103:-1:exon
so has part: feature:1400692-1400835:-1:exon

XP_005226249.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1402187-1402315:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1401757-1402081:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1401492-1401653:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1401199-1401390:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1400922-1401103:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1400692-1400835:-1:exon

NUP133
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: NUP133
note: nucleoporin 133; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(1410147..1464793)
location: region:1410147-1464793:-1
so has part: feature:1410147-1464793:-1:exon
subclass of: SO_0000010

524528
type: Gene
SIO_000068: ncbigene

position:1410147:-1
position: 1410147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1464793:-1
position: 1464793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1410147-1464793:-1:exon

NUP133
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: NUP133
product: nucleoporin 133
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001076872.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 9 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001076872.2
SIO_010081: NUP133
subclass of: SO_0000673
so part of: NUP133
location: complement(join(1410147..1410891,1418228..1418316,1419975..1420039,1421842..1421922,1423337..1423455,1426403..1426538,1427156..1427314,1429571..1429704,1430352..1430603,1431474..1431573,1432185..1432307,1436732..1436956,1439277..1439371,1440739..1440902,1444047..1444138,1445713..1445870,1446726..1446873,1448827..1448974,1452173..1452243,1452554..1452709,1454338..1454508,1455384..1455518,1456511..1456618,1457750..1457853,1462413..1462531,1464536..1464793))
location: region:1410147-1464793:-1
so has part: feature:1464536-1464793:-1:exon
so has part: feature:1462413-1462531:-1:exon
so has part: feature:1457750-1457853:-1:exon
so has part: feature:1456511-1456618:-1:exon
so has part: feature:1455384-1455518:-1:exon
so has part: feature:1454338-1454508:-1:exon
so has part: feature:1452554-1452709:-1:exon
so has part: feature:1452173-1452243:-1:exon
so has part: feature:1448827-1448974:-1:exon
so has part: feature:1446726-1446873:-1:exon
so has part: feature:1445713-1445870:-1:exon
so has part: feature:1444047-1444138:-1:exon
so has part: feature:1440739-1440902:-1:exon
so has part: feature:1439277-1439371:-1:exon
so has part: feature:1436732-1436956:-1:exon
so has part: feature:1432185-1432307:-1:exon
so has part: feature:1431474-1431573:-1:exon
so has part: feature:1430352-1430603:-1:exon
so has part: feature:1429571-1429704:-1:exon
so has part: feature:1427156-1427314:-1:exon
so has part: feature:1426403-1426538:-1:exon
so has part: feature:1423337-1423455:-1:exon
so has part: feature:1421842-1421922:-1:exon
so has part: feature:1419975-1420039:-1:exon
so has part: feature:1418228-1418316:-1:exon
so has part: feature:1410147-1410891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1464536-1464793:-1:exon

position:1464536:-1
position: 1464536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1462413-1462531:-1:exon

position:1462413:-1
position: 1462413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1462531:-1
position: 1462531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1457750-1457853:-1:exon

position:1457750:-1
position: 1457750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1457853:-1
position: 1457853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1456511-1456618:-1:exon

position:1456511:-1
position: 1456511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1456618:-1
position: 1456618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1455384-1455518:-1:exon

position:1455384:-1
position: 1455384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1455518:-1
position: 1455518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1454338-1454508:-1:exon

position:1454338:-1
position: 1454338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1454508:-1
position: 1454508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1452554-1452709:-1:exon

position:1452554:-1
position: 1452554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1452709:-1
position: 1452709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1452173-1452243:-1:exon

position:1452173:-1
position: 1452173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1452243:-1
position: 1452243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1448827-1448974:-1:exon

position:1448827:-1
position: 1448827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1448974:-1
position: 1448974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1446726-1446873:-1:exon

position:1446726:-1
position: 1446726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1446873:-1
position: 1446873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1445713-1445870:-1:exon

position:1445713:-1
position: 1445713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1445870:-1
position: 1445870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1444047-1444138:-1:exon

position:1444047:-1
position: 1444047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1444138:-1
position: 1444138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1440739-1440902:-1:exon

position:1440739:-1
position: 1440739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1440902:-1
position: 1440902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1439277-1439371:-1:exon

position:1439277:-1
position: 1439277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1439371:-1
position: 1439371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1436732-1436956:-1:exon

position:1436732:-1
position: 1436732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1436956:-1
position: 1436956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1432185-1432307:-1:exon

position:1432185:-1
position: 1432185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1432307:-1
position: 1432307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1431474-1431573:-1:exon

position:1431474:-1
position: 1431474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1431573:-1
position: 1431573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1430352-1430603:-1:exon

position:1430352:-1
position: 1430352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1430603:-1
position: 1430603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1429571-1429704:-1:exon

position:1429571:-1
position: 1429571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1429704:-1
position: 1429704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1427156-1427314:-1:exon

position:1427156:-1
position: 1427156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1427314:-1
position: 1427314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1426403-1426538:-1:exon

position:1426403:-1
position: 1426403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1426538:-1
position: 1426538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1423337-1423455:-1:exon

position:1423337:-1
position: 1423337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1423455:-1
position: 1423455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1421842-1421922:-1:exon

position:1421842:-1
position: 1421842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1421922:-1
position: 1421922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1419975-1420039:-1:exon

position:1419975:-1
position: 1419975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1420039:-1
position: 1420039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1418228-1418316:-1:exon

position:1418228:-1
position: 1418228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1418316:-1
position: 1418316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1410147-1410891:-1:exon

position:1410891:-1
position: 1410891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NUP133
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: NUP133
inference: similar to AA sequence (same species):RefSeq:NP_001070340.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 2 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: nuclear pore complex protein Nup133
translation: MFPAVSSPRTPGTGTRRGPLGGVGPGSTPRATSRKGLTLGSSLSSPVLFSPAGRRSSLSSRGTPTRIFPHHSITESVNYDVKTFGSSLPVKVIEALTLTEVDDQLTVHIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPSDFHWSADLVALSYSATSGEAHSTQAVTVMVATREGSIRYWPSLASEDTYTETFIDLGGDKTYSFLTAVQGGSFILSSSGGQLIRLIPESIGKIHQHILPQGQGVLSGIGRKVSSLLGILSPSSDLILSSVLWDRDRASFYSLTSSNISKWELDDSSEKQAHSWDINRVLKENIIDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLLILAAAWHLADSPCLVYYSLITVEDNGYQMSDAVTVEVTQYNPPFQSEDLTICRLMVPNFSNQTACLYTENAVYMCSTGTGKFSLPQEKIVFNTQGDSILGAGSCGGIPILFSRNSGLVSITSRENVSILAEDLEDSLASSVAGPGNESVVFDTSTKNETIAQEDKTKLLKAAFLQFCRKDLGHAQMIVDELFCSHSDLDSDCELDKAVTQISVDLLDDYPASDPRWAESVPEEAPGFSNTSLIILHQLEDKMKAHSFLMDFIHQVGLFRRLSTFPVRGMPMATRLLLCEHAEKLAAAIILKNHHSRLPDLMNTVILMALNKRDCDVPSNLTPADVFFREASQVDTICECLLEHEEQVLKDTSMESVEWAEVVINVNSILKDMLQAASHYRQNRNSLYRREESGEKEPEYIPWTATSGPAGIRTAIMRQHRTVLKMVYPQADSNLRNVLTEQLVALIDGFLDGYVSQLKSVDKSSDQERYSSLEMEYLQKRSDLLSPLLTLGQYPWAASLAEKYCDFDILVQMCEQTDNQTRLQRYMTQFADQNFSDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANRETRYFAKKKTLLGLSKLAALASDFSEDTLQEKIEEMAEQERFLLHQETLPEQLLAEKRLSLSAMPVLTASQLIGLYICEENRRANEYDFKKALDLLEYIDEEEDVNINDLKLEILCKALQRDNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKELLQADQLGSLKSNPYFEFVLKANYEYYVQGQM
SIO_010081: NUP133
subclass of: SO_0000673
so part of: NUP133
location: complement(join(1410755..1410891,1418228..1418316,1419975..1420039,1421842..1421922,1423337..1423455,1426403..1426538,1427156..1427314,1429571..1429704,1430352..1430603,1431474..1431573,1432185..1432307,1436732..1436956,1439277..1439371,1440739..1440902,1444047..1444138,1445713..1445870,1446726..1446873,1448827..1448974,1452173..1452243,1452554..1452709,1454338..1454508,1455384..1455518,1456511..1456618,1457750..1457853,1462413..1462531,1464536..1464717))
location: region:1410755-1464717:-1
so has part: feature:1464536-1464717:-1:exon
so has part: feature:1462413-1462531:-1:exon
so has part: feature:1457750-1457853:-1:exon
so has part: feature:1456511-1456618:-1:exon
so has part: feature:1455384-1455518:-1:exon
so has part: feature:1454338-1454508:-1:exon
so has part: feature:1452554-1452709:-1:exon
so has part: feature:1452173-1452243:-1:exon
so has part: feature:1448827-1448974:-1:exon
so has part: feature:1446726-1446873:-1:exon
so has part: feature:1445713-1445870:-1:exon
so has part: feature:1444047-1444138:-1:exon
so has part: feature:1440739-1440902:-1:exon
so has part: feature:1439277-1439371:-1:exon
so has part: feature:1436732-1436956:-1:exon
so has part: feature:1432185-1432307:-1:exon
so has part: feature:1431474-1431573:-1:exon
so has part: feature:1430352-1430603:-1:exon
so has part: feature:1429571-1429704:-1:exon
so has part: feature:1427156-1427314:-1:exon
so has part: feature:1426403-1426538:-1:exon
so has part: feature:1423337-1423455:-1:exon
so has part: feature:1421842-1421922:-1:exon
so has part: feature:1419975-1420039:-1:exon
so has part: feature:1418228-1418316:-1:exon
so has part: feature:1410755-1410891:-1:exon

NP_001070340.1
type: Protein
SIO_000068: ncbiprotein

position:1410755:-1
position: 1410755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1464717:-1
position: 1464717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1464536-1464717:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1462413-1462531:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1457750-1457853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1456511-1456618:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1455384-1455518:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1454338-1454508:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1452554-1452709:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1452173-1452243:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1448827-1448974:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1446726-1446873:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1445713-1445870:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1444047-1444138:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1440739-1440902:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1439277-1439371:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1436732-1436956:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1432185-1432307:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1431474-1431573:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1430352-1430603:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1429571-1429704:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1427156-1427314:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1426403-1426538:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1423337-1423455:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1421842-1421922:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1419975-1420039:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1418228-1418316:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1410755-1410891:-1:exon

LOC100140514
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC100140514
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1460140..1462093
location: region:1460140-1462093:1
so has part: feature:1460140-1462093:1:exon

100140514
type: Gene
SIO_000068: ncbigene

position:1460140:1
position: 1460140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1462093:1
position: 1462093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1460140-1462093:1:exon

LOC100140514
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC100140514
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC100140514
subclass of: SO_0000673
so part of: LOC100140514
location: 1460140..1462093
location: region:1460140-1462093:1
so has part: feature:1460140-1462093:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1460140-1462093:1:exon

ABCB10
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: ABCB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1471551..1505822)
location: region:1471551-1505822:-1
so has part: feature:1471551-1505822:-1:exon
subclass of: SO_0000010

789800
type: Gene
SIO_000068: ncbigene

position:1471551:-1
position: 1471551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1505822:-1
position: 1505822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1471551-1505822:-1:exon

ABCB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: ABCB10
product: ATP binding cassette subfamily B member 10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 ESTs, 5 long SRA reads, 6 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 152 samples with support for all annotated introns
transcript id: XM_024986813.1
SIO_010081: ABCB10
subclass of: SO_0000673
so part of: ABCB10
location: complement(join(1471551..1473694,1474154..1474188,1476205..1476248,1480506..1480686,1481815..1481894,1483681..1483890,1485033..1485128,1487325..1487460,1488578..1488724,1489477..1489611,1494449..1494651,1495388..1495588,1505339..1505822))
location: region:1471551-1505822:-1
so has part: feature:1505339-1505822:-1:exon
so has part: feature:1495388-1495588:-1:exon
so has part: feature:1494449-1494651:-1:exon
so has part: feature:1489477-1489611:-1:exon
so has part: feature:1488578-1488724:-1:exon
so has part: feature:1487325-1487460:-1:exon
so has part: feature:1485033-1485128:-1:exon
so has part: feature:1483681-1483890:-1:exon
so has part: feature:1481815-1481894:-1:exon
so has part: feature:1480506-1480686:-1:exon
so has part: feature:1476205-1476248:-1:exon
so has part: feature:1474154-1474188:-1:exon
so has part: feature:1471551-1473694:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1505339-1505822:-1:exon

position:1505339:-1
position: 1505339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1495388-1495588:-1:exon

position:1495388:-1
position: 1495388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1495588:-1
position: 1495588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1494449-1494651:-1:exon

position:1494449:-1
position: 1494449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1494651:-1
position: 1494651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1489477-1489611:-1:exon

position:1489477:-1
position: 1489477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1489611:-1
position: 1489611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1488578-1488724:-1:exon

position:1488578:-1
position: 1488578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1488724:-1
position: 1488724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1487325-1487460:-1:exon

position:1487325:-1
position: 1487325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1487460:-1
position: 1487460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1485033-1485128:-1:exon

position:1485033:-1
position: 1485033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1485128:-1
position: 1485128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1483681-1483890:-1:exon

position:1483681:-1
position: 1483681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1483890:-1
position: 1483890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1481815-1481894:-1:exon

position:1481815:-1
position: 1481815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1481894:-1
position: 1481894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1480506-1480686:-1:exon

position:1480506:-1
position: 1480506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1480686:-1
position: 1480686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1476205-1476248:-1:exon

position:1476205:-1
position: 1476205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1476248:-1
position: 1476248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1474154-1474188:-1:exon

position:1474154:-1
position: 1474154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1474188:-1
position: 1474188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1471551-1473694:-1:exon

position:1473694:-1
position: 1473694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ABCB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: ABCB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-binding cassette sub-family B member 10, mitochondrial
translation: MRGPPAWPLRLLLRRGAAARSPETRTLSTHPAFARPGGVEPALLAGGWAARAPRRWAGGGPGGPAGGAGLARLLALWSRHPGLSRCWALAGPVASRLPRSALPGCSTLVARAAGEAWRRGPALPAAAATPGHDPLLRPAAARRSEAQKLLSLAQPERRRLAAAVGFLAVSSVITMSAPFFLGKIIDVIYTNPSADCSSSLTRLCLALGGVFLCGAAANAVRVYLMQTSGQRIVNRLRASLFSSVLKQEVAFFDKTRTGELINRLSADAALLGRSVTENLSDGLRAGAQASVGIGMMFFVSPKLATFVLSVVPPVSIIAVLYGRYLRKLTKVTQDSLAQATQLAEERIGNIRTVRAFGKEMTEIEKYTSKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGVSIGGLSSFYSELMKGLGAGSRLWELLEREPELPFNEGAVLNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGAGKSTVISLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADNPASVTAEQIEQAAAVANAAAFIQNFPQGFSTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQQALDRLMEGRTVFIIAHRLSTIKNANVVAVLDQGRIIECGKHEELLLKPDGMYRKLMNKQSFISA
SIO_010081: ABCB10
subclass of: SO_0000673
so part of: ABCB10
location: complement(join(1473463..1473694,1474154..1474188,1476205..1476248,1480506..1480686,1481815..1481894,1483681..1483890,1485033..1485128,1487325..1487460,1488578..1488724,1489477..1489611,1494449..1494651,1495388..1495588,1505339..1505822))
location: region:1473463-1505822:-1
so has part: feature:1505339-1505822:-1:exon
so has part: feature:1495388-1495588:-1:exon
so has part: feature:1494449-1494651:-1:exon
so has part: feature:1489477-1489611:-1:exon
so has part: feature:1488578-1488724:-1:exon
so has part: feature:1487325-1487460:-1:exon
so has part: feature:1485033-1485128:-1:exon
so has part: feature:1483681-1483890:-1:exon
so has part: feature:1481815-1481894:-1:exon
so has part: feature:1480506-1480686:-1:exon
so has part: feature:1476205-1476248:-1:exon
so has part: feature:1474154-1474188:-1:exon
so has part: feature:1473463-1473694:-1:exon

XP_024842581.1
type: Protein
SIO_000068: ncbiprotein

position:1473463:-1
position: 1473463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1505339-1505822:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1495388-1495588:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1494449-1494651:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1489477-1489611:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1488578-1488724:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1487325-1487460:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1485033-1485128:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1483681-1483890:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1481815-1481894:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1480506-1480686:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1476205-1476248:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1474154-1474188:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1473463-1473694:-1:exon

TAF5L
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TAF5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1545839..1577445)
location: region:1545839-1577445:-1
so has part: feature:1545839-1577445:-1:exon
subclass of: SO_0000010

510413
type: Gene
SIO_000068: ncbigene

position:1545839:-1
position: 1545839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1577445:-1
position: 1577445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1545839-1577445:-1:exon

TAF5L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TAF5L
product: TATA-box binding protein associated factor 5 like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 ESTs, 9 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 313 samples with support for all annotated introns
transcript id: XM_024986934.1
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1545839..1547606,1554659..1555383,1562073..1562177,1565324..1565468,1577280..1577445))
location: region:1545839-1577445:-1
so has part: feature:1577280-1577445:-1:exon
so has part: feature:1565324-1565468:-1:exon
so has part: feature:1562073-1562177:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1545839-1547606:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1577280-1577445:-1:exon

position:1577280:-1
position: 1577280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1565324-1565468:-1:exon

position:1565324:-1
position: 1565324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1565468:-1
position: 1565468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1562073-1562177:-1:exon

position:1562073:-1
position: 1562073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1562177:-1
position: 1562177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1554659-1555383:-1:exon

position:1554659:-1
position: 1554659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1555383:-1
position: 1555383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1545839-1547606:-1:exon

position:1547606:-1
position: 1547606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TAF5L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TAF5L
product: TATA-box binding protein associated factor 5 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 ESTs, 7 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 132 samples with support for all annotated introns
transcript id: XM_024986933.1
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1545839..1547606,1554659..1555383,1562073..1562177,1565324..1565468,1575715..1575874,1577280..1577426))
location: region:1545839-1577426:-1
so has part: feature:1577280-1577426:-1:exon
so has part: feature:1575715-1575874:-1:exon
so has part: feature:1565324-1565468:-1:exon
so has part: feature:1562073-1562177:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1545839-1547606:-1:exon

position:1577426:-1
position: 1577426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1577280-1577426:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1575715-1575874:-1:exon

position:1575715:-1
position: 1575715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1575874:-1
position: 1575874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1565324-1565468:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1562073-1562177:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1545839-1547606:-1:exon

TAF5L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TAF5L
product: TATA-box binding protein associated factor 5 like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 ESTs, 5 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
transcript id: XM_024986935.1
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1545839..1547606,1554659..1555383,1565324..1565468,1570451..1570493))
location: region:1545839-1570493:-1
so has part: feature:1570451-1570493:-1:exon
so has part: feature:1565324-1565468:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1545839-1547606:-1:exon

position:1570493:-1
position: 1570493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1570451-1570493:-1:exon

position:1570451:-1
position: 1570451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1565324-1565468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1545839-1547606:-1:exon

TAF5L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TAF5L
product: TATA-box binding protein associated factor 5 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 38 ESTs, 7 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 114 samples with support for all annotated introns
transcript id: XM_015460915.2
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1545839..1547606,1554659..1555383,1562073..1562177,1565324..1565468,1570451..1570487))
location: region:1545839-1570487:-1
so has part: feature:1570451-1570487:-1:exon
so has part: feature:1565324-1565468:-1:exon
so has part: feature:1562073-1562177:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1545839-1547606:-1:exon

position:1570487:-1
position: 1570487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1570451-1570487:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1565324-1565468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1562073-1562177:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1545839-1547606:-1:exon

TAF5L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TAF5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X2
translation: MVMKRVRTEQIQMAVSCYLKRRQYGDADGPVKQGLRLSQSTEEMAASLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLTLIQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFRLRAFLDNKYVVRLQEDSYNYLLRYLQSDNNTALCRILAWHIHLDVQPAKRTDYQLYTSGGSFRGEGGGLEPADMPAPILQNEAALELLQESIKRVKDGPPSLTTIYFYAFYNTEQLLNTAEVSPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDFLEEEDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1546809..1547606,1554659..1555383,1562073..1562177,1565324..1565468,1575715..1575717))
location: region:1546809-1575717:-1
so has part: feature:1575715-1575717:-1:exon
so has part: feature:1565324-1565468:-1:exon
so has part: feature:1562073-1562177:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1546809-1547606:-1:exon

XP_024842701.1
type: Protein
SIO_000068: ncbiprotein

position:1546809:-1
position: 1546809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1575717:-1
position: 1575717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1575715-1575717:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1565324-1565468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1562073-1562177:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1546809-1547606:-1:exon

TAF5L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TAF5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X3
translation: MKRVRTEQIQMAVSCYLKRRQYGDADGPVKQGLRLSQSTEEMAASLTDSDSQHSHEVMPLLYPLFVYLHLTLIQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFRLRAFLDNKYVVRLQEDSYNYLLRYLQSDNNTALCRILAWHIHLDVQPAKRTDYQLYTSGGSFRGEGGGLEPADMPAPILQNEAALELLQESIKRVKDGPPSLTTIYFYAFYNTEQLLNTAEVSPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDFLEEEDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1546809..1547606,1554659..1555383,1565324..1565465))
location: region:1546809-1565465:-1
so has part: feature:1565324-1565465:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1546809-1547606:-1:exon

XP_024842703.1
type: Protein
SIO_000068: ncbiprotein

position:1565465:-1
position: 1565465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1565324-1565465:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1546809-1547606:-1:exon

TAF5L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TAF5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
translation: MKRVRTEQIQMAVSCYLKRRQYGDADGPVKQGLRLSQSTEEMAASLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLTLIQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFRLRAFLDNKYVVRLQEDSYNYLLRYLQSDNNTALCRILAWHIHLDVQPAKRTDYQLYTSGGSFRGEGGGLEPADMPAPILQNEAALELLQESIKRVKDGPPSLTTIYFYAFYNTEQLLNTAEVSPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDFLEEEDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1546809..1547606,1554659..1555383,1562073..1562177,1565324..1565465))
location: region:1546809-1565465:-1
so has part: feature:1565324-1565465:-1:exon
so has part: feature:1562073-1562177:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1546809-1547606:-1:exon

XP_015316401.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1565324-1565465:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1562073-1562177:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1546809-1547606:-1:exon

TAF5L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TAF5L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
translation: MKRVRTEQIQMAVSCYLKRRQYGDADGPVKQGLRLSQSTEEMAASLTVQSESGCANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLTLIQNSPKSTVESFYSRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFRLRAFLDNKYVVRLQEDSYNYLLRYLQSDNNTALCRILAWHIHLDVQPAKRTDYQLYTSGGSFRGEGGGLEPADMPAPILQNEAALELLQESIKRVKDGPPSLTTIYFYAFYNTEQLLNTAEVSPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDFLEEEDDEDDNLGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSSSELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
SIO_010081: TAF5L
subclass of: SO_0000673
so part of: TAF5L
location: complement(join(1546809..1547606,1554659..1555383,1562073..1562177,1565324..1565465))
location: region:1546809-1565465:-1
so has part: feature:1565324-1565465:-1:exon
so has part: feature:1562073-1562177:-1:exon
so has part: feature:1554659-1555383:-1:exon
so has part: feature:1546809-1547606:-1:exon

XP_024842702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1565324-1565465:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1562073-1562177:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1554659-1555383:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1546809-1547606:-1:exon

URB2
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: URB2
note: URB2 ribosome biogenesis 2 homolog (S. cerevisiae); Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 1577579..1604956
location: region:1577579-1604956:1
so has part: feature:1577579-1604956:1:exon
subclass of: SO_0000010

514623
type: Gene
SIO_000068: ncbigene

position:1577579:1
position: 1577579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1604956:1
position: 1604956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1577579-1604956:1:exon

URB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: URB2
product: URB2 ribosome biogenesis 2 homolog (S. cerevisiae), transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 2 long SRA reads, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 87 samples with support for all annotated introns
transcript id: XM_005226193.4
SIO_010081: URB2
subclass of: SO_0000673
so part of: URB2
location: join(1577579..1577886,1579613..1579746,1581752..1581928,1583748..1587069,1589696..1589856,1591876..1591986,1592465..1592707,1596310..1596397,1599356..1599495,1603079..1604956)
location: region:1577579-1604956:1
so has part: feature:1577579-1577886:1:exon
so has part: feature:1579613-1579746:1:exon
so has part: feature:1581752-1581928:1:exon
so has part: feature:1583748-1587069:1:exon
so has part: feature:1589696-1589856:1:exon
so has part: feature:1591876-1591986:1:exon
so has part: feature:1592465-1592707:1:exon
so has part: feature:1596310-1596397:1:exon
so has part: feature:1599356-1599495:1:exon
so has part: feature:1603079-1604956:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1577579-1577886:1:exon

position:1577886:1
position: 1577886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1579613-1579746:1:exon

position:1579613:1
position: 1579613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1579746:1
position: 1579746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1581752-1581928:1:exon

position:1581752:1
position: 1581752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1581928:1
position: 1581928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1583748-1587069:1:exon

position:1583748:1
position: 1583748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1587069:1
position: 1587069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1589696-1589856:1:exon

position:1589696:1
position: 1589696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1589856:1
position: 1589856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1591876-1591986:1:exon

position:1591876:1
position: 1591876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1591986:1
position: 1591986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1592465-1592707:1:exon

position:1592465:1
position: 1592465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1592707:1
position: 1592707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1596310-1596397:1:exon

position:1596310:1
position: 1596310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1596397:1
position: 1596397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1599356-1599495:1:exon

position:1599356:1
position: 1599356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1599495:1
position: 1599495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1603079-1604956:1:exon

position:1603079:1
position: 1603079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

URB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: URB2
product: URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001102004.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001102004.1
SIO_010081: URB2
subclass of: SO_0000673
so part of: URB2
location: join(1577666..1577819,1579613..1579746,1581752..1581928,1583748..1587069,1589696..1589856,1591876..1591986,1592465..1592707,1596310..1596397,1599356..1599495,1603079..1603804)
location: region:1577666-1603804:1
so has part: feature:1577666-1577819:1:exon
so has part: feature:1579613-1579746:1:exon
so has part: feature:1581752-1581928:1:exon
so has part: feature:1583748-1587069:1:exon
so has part: feature:1589696-1589856:1:exon
so has part: feature:1591876-1591986:1:exon
so has part: feature:1592465-1592707:1:exon
so has part: feature:1596310-1596397:1:exon
so has part: feature:1599356-1599495:1:exon
so has part: feature:1603079-1603804:1:exon

position:1577666:1
position: 1577666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1603804:1
position: 1603804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1577666-1577819:1:exon

position:1577819:1
position: 1577819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1579613-1579746:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1581752-1581928:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1583748-1587069:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1589696-1589856:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1591876-1591986:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1592465-1592707:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1596310-1596397:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1599356-1599495:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1603079-1603804:1:exon

URB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: URB2
inference: similar to AA sequence (same species):RefSeq:NP_001095474.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: unhealthy ribosome biogenesis protein 2 homolog
translation: MAAVYSGISVKLKSKTTSWEDKLKLAHFAWISHQCLLPNKEQVLLDWARQSLVAFYKKKLELKEDIVERLWIYVDNILHSRKLQNLLKNGKTVNLQISLIKIINERIAEFSLLGSQRNICVVLSCCQGILSTPALAVIYTARQELIVDLLSQLCWLACRQPGAIIPQLFEVIHLSLSHYLSLQQQQVNPRRAFGEVTGHLLQPCLVLRHYLLGGTWTQAGQGQLRPALGRDIRNQIEAVLQGGAFQPELLPSYKEELLDQQQGDSKIGAMKNLLAPLGTMIARLVDAGYCDPSLQASVVANSVALLYKLFVESYLKEGNQLLCFKVLPQLFGCLRISHLEEQRQALSMSDWTTELLVVEQLLNSVASNTIYNIAADRIRHGEAQFHFYRHLAELLLKHPQALVPAWFRCLKVLLSLNHLILEPDLDDLLASAWIDAEVTELRTQKAQEALIHTLFQTYAKLRQVPRLFEEVLGVLCRPAAEALRLPLLTAGPAAVLQECLPELPLSQVLDTWALVQERFQSLVLSGLRGDEDMALKSLSLSSLLCCVMVNARSLDAGSPLPVVRRMRQAMDGMLQGLVKPLLDLLRKPWPSTPELWQQKVGDSALLLAHTWAQVDTVLRLSCSPYRSEPGTLAGATPEPSGPLPLLPGVEAKHWEEIEEFTVQSDSLSRYCLEQLHLQRMKNTLLQASFQSEEALCALRRDAAYILGSGRASVTRGMSASWDGQVGTVSVLTYPIAHWHLVMSNIMILISYLGPDDLQYLASILLRTLPVSKAREGLVEEEPDITLGKISQAVLHSPLFPEMQSLHSAFFLGLTARCGSILCASAQRETALLRQQLPWLFEEDYMVMAHWESRFAKVGAEGVEPREEIAQNILSLVRGDSPIQLEGEQLESILQLLGVLSALQLDSLLAPYHVHCFLLLLSVAVTTPGSSCSSSLTLRVLRTCYQLLGCLQRGKSAQAVLRVMYVSDIFEVTLTSLFRASRRFLVSVNDPSWLEFLQVVGTFLEQLLQMLIQRKLSLGLNFGKILAFLSGHQLHNEVTSGQRSEDQVPLGQQLMLVSLSKVCQVLGPLVKEQKQQDEAPEVLPKLLKEVVLQTGALLQHCMAPGAQGHLPPAVISSLGSLLEADVALRSRQNWTDVSKGTDKALSACTTLYQTIYAQILLELPALVGDPPSFQAAVQFLTLFFLVPELHPQKDSVCTSVFHSVRKVLADPAIPVQIVEEIEPHLGALFTQMLEAGTTEDFRMWLQCILQGLDVSNLWRADLQAVLSAATLVKLLLNCPCSEEKASLFWRTCPQMVTALMLQTREACQEQPSALALVGPVLDVLAALLRQGEGAISNPHHVSLAFSILLTVPLDHLKPLEYGHIFSRAHNVLFSILQCHPKVTLKTIPSFLNCFHRLVRSIIHEGRQKDKGSAEDLPVVLDCARLVERMYSHMAARAEEFRVFSPFMVAQYVVEAQKVTLYPAVKVLLQEGIYLILDLCIEPDIQFLRASLQLGVRDVFKELHSDYVKHHKSKREGEKRYAV
SIO_010081: URB2
subclass of: SO_0000673
so part of: URB2
location: join(1579621..1579746,1581752..1581928,1583748..1587069,1589696..1589856,1591876..1591986,1592465..1592707,1596310..1596397,1599356..1599495,1603079..1603276)
location: region:1579621-1603276:1
so has part: feature:1579621-1579746:1:exon
so has part: feature:1581752-1581928:1:exon
so has part: feature:1583748-1587069:1:exon
so has part: feature:1589696-1589856:1:exon
so has part: feature:1591876-1591986:1:exon
so has part: feature:1592465-1592707:1:exon
so has part: feature:1596310-1596397:1:exon
so has part: feature:1599356-1599495:1:exon
so has part: feature:1603079-1603276:1:exon

NP_001095474.1
type: Protein
SIO_000068: ncbiprotein

position:1579621:1
position: 1579621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1603276:1
position: 1603276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1579621-1579746:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1581752-1581928:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1583748-1587069:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1589696-1589856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1591876-1591986:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1592465-1592707:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1596310-1596397:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1599356-1599495:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1603079-1603276:1:exon

URB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: URB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: unhealthy ribosome biogenesis protein 2 homolog isoform X1
translation: MAAVYSGISVKLKSKTTSWEDKLKLAHFAWISHQCLLPNKEQVLLDWARQSLVAFYKKKLELKEDIVERLWIYVDNILHSRKLQNLLKNGKTVNLQISLIKIINERIAEFSLLGSQRNICVVLSCCQGILSTPALAVIYTARQELIVDLLSQLCWLACRQPGAIIPQLFEVIHLSLSHYLSLQQQQVNPRRAFGEVTGHLLQPCLVLRHYLLGGTWTQAGQGQLRPALGRDIRNQIEAVLQGGAFQPELLPSYKEELLDQQQGDSKIGAMKNLLAPLGTMIARLVDAGYCDPSLQASVVANSVALLYKLFVESYLKEGNQLLCFKVLPQLFGCLRISHLEEQRQALSMSDWTTELLVVEQLLNSVASNTIYNIAADRIRHGEAQFHFYRHLAELLLKHPQALVPAWFRCLKVLLSLNHLILEPDLDDLLASAWIDAEVTELRTQKAQEALIHTLFQTYAKLRQVPRLFEEVLGVLCRPAAEALRLPLLTAGPAAVLQECLPELPLSQVLDTWALVQERFQSLVLSGLRGDEDMALKSLSLSSLLCCVMVNARSLDAGSPLPVVRRMRQAMDGMLQGLVKPLLDLLRKPWPSTPELWQQKVGDSALLLAHTWAQVDTVLRLSCSPYRSEPGTLAGATPEPSGPLPLLPGVEAKHWEEIEEFTVQSDSLSRYCLEQLHLQRMKNTLLQASFQSEEALCALRRDAAYILGSGRASVTRGMSASWDGQVGTVSVLTYPIAHWHLVMSNIMILISYLGPDDLQYLASILLRTLPVSKAREGLVEEEPDITLGKISQAVLHSPLFPEMQSLHSAFFLGLTARCGSILCASAQRETALLRQQLPWLFEEDYMVMAHWESRFAKVGAEGVEPREEIAQNILSLVRGDSPIQLEGEQLESILQLLGVLSALQLDSLLAPYHVHCFLLLLSVAVTTPGSSCSSSLTLRVLRTCYQLLGCLQRGKSAQAVLRVMYVSDIFEVTLTSLFRASRRLLVSVNDPSWLEFLQVVGTFLEQLLQMLIQRKLSLGLNFGKILAFLSGHQLHNEVTSGQRSEDQVPLGQQLMLVSLSKVCQVLGPLVKEQKQQDEAPEVLPKLLKEVVLQTGALLQHCMAPGAQGHLPPAVISSLGSLLEADVALRSRQNWTDVSKGTDKALSACTTLYQTIYAQILLELPALVGDPPSFQAAVQFLTLFFLVPELHPQKDSVCTSVFHSVRKVLADPAIPVQIVEEIEPHLGALFTQMLEAGTTEDFRMWLQCILQGLDVSNLWRADLQAVLSAATLVKLLLNCPCSEEKASLFWRTCPQMVTALMLQTREACQEQPSALALVGPVLDVLAALLRQGEGAISNPHHVSLAFSILLTVPLDHLKPLEYGHIFSRAHNVLFSILQCHPKVTLKTIPSFLNCFHRLVRSIIHEGRQKDKGSAEDLPVVLDCARLVERMYSHMAARAEEFRVFSPFMVAQYVVEAQKVTLYPAVKVLLQEGIYLILDLCIEPDIQFLRASLQLGVRDVFKELHSDYVKHHKSKREGEKRYAV
SIO_010081: URB2
subclass of: SO_0000673
so part of: URB2
location: join(1579621..1579746,1581752..1581928,1583748..1587069,1589696..1589856,1591876..1591986,1592465..1592707,1596310..1596397,1599356..1599495,1603079..1603276)
location: region:1579621-1603276:1
so has part: feature:1579621-1579746:1:exon
so has part: feature:1581752-1581928:1:exon
so has part: feature:1583748-1587069:1:exon
so has part: feature:1589696-1589856:1:exon
so has part: feature:1591876-1591986:1:exon
so has part: feature:1592465-1592707:1:exon
so has part: feature:1596310-1596397:1:exon
so has part: feature:1599356-1599495:1:exon
so has part: feature:1603079-1603276:1:exon

XP_005226250.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1579621-1579746:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1581752-1581928:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1583748-1587069:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1589696-1589856:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1591876-1591986:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1592465-1592707:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1596310-1596397:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1599356-1599495:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1603079-1603276:1:exon

LOC783687
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC783687
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1762105..1762830)
location: region:1762105-1762830:-1
so has part: feature:1762105-1762830:-1:exon

783687
type: Gene
SIO_000068: ncbigene

position:1762105:-1
position: 1762105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1762830:-1
position: 1762830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1762105-1762830:-1:exon

LOC783687
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC783687
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC783687
subclass of: SO_0000673
so part of: LOC783687
location: complement(1762105..1762830)
location: region:1762105-1762830:-1
so has part: feature:1762105-1762830:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1762105-1762830:-1:exon

GALNT2
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: GALNT2
note: polypeptide N-acetylgalactosaminyltransferase 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 2098139..2284314
location: region:2098139-2284314:1
so has part: feature:2098139-2284314:1:exon
subclass of: SO_0000010

616218
type: Gene
SIO_000068: ncbigene

position:2098139:1
position: 2098139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2284314:1
position: 2284314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2098139-2284314:1:exon

GALNT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: GALNT2
product: polypeptide N-acetylgalactosaminyltransferase 2
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001193103.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 4 substitutions, 1 non-frameshifting indel compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001193103.2
SIO_010081: GALNT2
subclass of: SO_0000673
so part of: GALNT2
location: join(2098139..2098343,2194697..2194790,2212553..2212706,2239911..2240009,2240265..2240332,2240584..2240649,2248945..2249066,2250051..2250138,2253225..2253312,2254352..2254455,2258773..2258899,2271326..2271418,2271735..2271818,2273672..2273798,2277477..2277596,2281802..2284314)
location: region:2098139-2284314:1
so has part: feature:2098139-2098343:1:exon
so has part: feature:2194697-2194790:1:exon
so has part: feature:2212553-2212706:1:exon
so has part: feature:2239911-2240009:1:exon
so has part: feature:2240265-2240332:1:exon
so has part: feature:2240584-2240649:1:exon
so has part: feature:2248945-2249066:1:exon
so has part: feature:2250051-2250138:1:exon
so has part: feature:2253225-2253312:1:exon
so has part: feature:2254352-2254455:1:exon
so has part: feature:2258773-2258899:1:exon
so has part: feature:2271326-2271418:1:exon
so has part: feature:2271735-2271818:1:exon
so has part: feature:2273672-2273798:1:exon
so has part: feature:2277477-2277596:1:exon
so has part: feature:2281802-2284314:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2098139-2098343:1:exon

position:2098343:1
position: 2098343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2194697-2194790:1:exon

position:2194697:1
position: 2194697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2194790:1
position: 2194790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2212553-2212706:1:exon

position:2212553:1
position: 2212553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2212706:1
position: 2212706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2239911-2240009:1:exon

position:2239911:1
position: 2239911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2240009:1
position: 2240009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2240265-2240332:1:exon

position:2240265:1
position: 2240265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2240332:1
position: 2240332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2240584-2240649:1:exon

position:2240584:1
position: 2240584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2240649:1
position: 2240649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2248945-2249066:1:exon

position:2248945:1
position: 2248945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2249066:1
position: 2249066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2250051-2250138:1:exon

position:2250051:1
position: 2250051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2250138:1
position: 2250138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2253225-2253312:1:exon

position:2253225:1
position: 2253225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2253312:1
position: 2253312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2254352-2254455:1:exon

position:2254352:1
position: 2254352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2254455:1
position: 2254455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2258773-2258899:1:exon

position:2258773:1
position: 2258773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2258899:1
position: 2258899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2271326-2271418:1:exon

position:2271326:1
position: 2271326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2271418:1
position: 2271418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2271735-2271818:1:exon

position:2271735:1
position: 2271735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2271818:1
position: 2271818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2273672-2273798:1:exon

position:2273672:1
position: 2273672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2273798:1
position: 2273798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2277477-2277596:1:exon

position:2277477:1
position: 2277477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2277596:1
position: 2277596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2281802-2284314:1:exon

position:2281802:1
position: 2281802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GALNT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: GALNT2
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: polypeptide N-acetylgalactosaminyltransferase 2 precursor
translation: MRRRSRMLLCFAFLWVLGIAYYMYSGGGSALAAGAGGGAGRKEDWNDIDPIKKKDLHHSNGDEKAHSMETLPPGKVRWRDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAVPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNERWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLNCKPFKWYLENVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRAAKTGGLSVEVCGPALSQQWKFSLNLQP
SIO_010081: GALNT2
subclass of: SO_0000673
so part of: GALNT2
location: join(2098218..2098343,2194697..2194790,2212553..2212706,2239911..2240009,2240265..2240332,2240584..2240649,2248945..2249066,2250051..2250138,2253225..2253312,2254352..2254455,2258773..2258899,2271326..2271418,2271735..2271818,2273672..2273798,2277477..2277596,2281802..2281957)
location: region:2098218-2281957:1
so has part: feature:2098218-2098343:1:exon
so has part: feature:2194697-2194790:1:exon
so has part: feature:2212553-2212706:1:exon
so has part: feature:2239911-2240009:1:exon
so has part: feature:2240265-2240332:1:exon
so has part: feature:2240584-2240649:1:exon
so has part: feature:2248945-2249066:1:exon
so has part: feature:2250051-2250138:1:exon
so has part: feature:2253225-2253312:1:exon
so has part: feature:2254352-2254455:1:exon
so has part: feature:2258773-2258899:1:exon
so has part: feature:2271326-2271418:1:exon
so has part: feature:2271735-2271818:1:exon
so has part: feature:2273672-2273798:1:exon
so has part: feature:2277477-2277596:1:exon
so has part: feature:2281802-2281957:1:exon

NP_001180032.1
type: Protein
SIO_000068: ncbiprotein

position:2098218:1
position: 2098218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2281957:1
position: 2281957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2098218-2098343:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2194697-2194790:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2212553-2212706:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2239911-2240009:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2240265-2240332:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2240584-2240649:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2248945-2249066:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2250051-2250138:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2253225-2253312:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2254352-2254455:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2258773-2258899:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2271326-2271418:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2271735-2271818:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2273672-2273798:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2277477-2277596:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2281802-2281957:1:exon

LOC112444763
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444763
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2226700..2238127
location: region:2226700-2238127:1
so has part: feature:2226700-2238127:1:exon
subclass of: SO_0000011

112444763
type: Gene
SIO_000068: ncbigene

position:2226700:1
position: 2226700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2238127:1
position: 2238127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2226700-2238127:1:exon

LOC112444763
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC112444763
product: uncharacterized LOC112444763
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_003033112.1
SIO_010081: LOC112444763
subclass of: SO_0000673
so part of: LOC112444763
location: join(2226700..2227406,2236286..2238127)
location: region:2226700-2238127:1
so has part: feature:2226700-2227406:1:exon
so has part: feature:2236286-2238127:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2226700-2227406:1:exon

position:2227406:1
position: 2227406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2236286-2238127:1:exon

position:2236286:1
position: 2236286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PGBD5
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: PGBD5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2315464..2413142)
location: region:2315464-2413142:-1
so has part: feature:2315464-2413142:-1:exon
subclass of: SO_0000010

101907907
type: Gene
SIO_000068: ncbigene

position:2315464:-1
position: 2315464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2413142:-1
position: 2413142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2315464-2413142:-1:exon

PGBD5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: PGBD5
product: piggyBac transposable element derived 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 4 long SRA reads, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_005226200.3
SIO_010081: PGBD5
subclass of: SO_0000673
so part of: PGBD5
location: complement(join(2315464..2317384,2318805..2318909,2328348..2328545,2331523..2331703,2351465..2351599,2356687..2357114,2412809..2413142))
location: region:2315464-2413142:-1
so has part: feature:2412809-2413142:-1:exon
so has part: feature:2356687-2357114:-1:exon
so has part: feature:2351465-2351599:-1:exon
so has part: feature:2331523-2331703:-1:exon
so has part: feature:2328348-2328545:-1:exon
so has part: feature:2318805-2318909:-1:exon
so has part: feature:2315464-2317384:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2412809-2413142:-1:exon

position:2412809:-1
position: 2412809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2356687-2357114:-1:exon

position:2356687:-1
position: 2356687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2357114:-1
position: 2357114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2351465-2351599:-1:exon

position:2351465:-1
position: 2351465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2351599:-1
position: 2351599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2331523-2331703:-1:exon

position:2331523:-1
position: 2331523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2331703:-1
position: 2331703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2328348-2328545:-1:exon

position:2328348:-1
position: 2328348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2328545:-1
position: 2328545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2318805-2318909:-1:exon

position:2318805:-1
position: 2318805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2318909:-1
position: 2318909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2315464-2317384:-1:exon

position:2317384:-1
position: 2317384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PGBD5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: PGBD5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: piggyBac transposable element-derived protein 5
translation: MAESGGAARRRAPALLEAARARYESLHISDDVFGESGPDSGGNPFYSTSAASRSSSAASSDDEPERPGPARGPGSPAPGAPAAQESEEDEAGAGWSSTLRDRPPPRFEDTGGPTRKMPPSASAMDFFQLFVPDNVLKNMVVQTNLYAKKFQERFGSDGAWVDVTLPEMKAFLGYVISTSTSHCESVLSIWSGGFYSNRRLALVMSQARFEKILKYFHVVAFRSSQTTHGLYKVQPFLDSLQSGFDSAFRPSQTQVLHEPLIDEDPVFIATCTERELRKRKKRKFSLWVRQCSSTGFIIQIYVHLKEGSGPDGLDALKNKPQLHSMVARSLCRNAAGKNYIIFTGPSITSLTLFEEFEKQGIYCCGLLSSRKSDCTGLPPSMLSSPATPPARGQHSIRMKGSMSLICWYNKGHFRFLTNAYSPVQQGVIIKRRSGEIPCPXAVEAFAAHLSYICKYDDKYSKYFISHKPNKTWQQVFWFAVSIAVNNAYILYKMSDAYHVKRYSRAQFGERLVQELLGLEDTSPSL
SIO_010081: PGBD5
subclass of: SO_0000673
so part of: PGBD5
location: complement(join(2317189..2317384,2318805..2318909,2328348..2328545,2331523..2331703,2351465..2351599,2356687..2357114,2412809..2413142))
location: region:2317189-2413142:-1
so has part: feature:2412809-2413142:-1:exon
so has part: feature:2356687-2357114:-1:exon
so has part: feature:2351465-2351599:-1:exon
so has part: feature:2331523-2331703:-1:exon
so has part: feature:2328348-2328545:-1:exon
so has part: feature:2318805-2318909:-1:exon
so has part: feature:2317189-2317384:-1:exon

XP_005226257.2
type: Protein
SIO_000068: ncbiprotein

position:2317189:-1
position: 2317189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2412809-2413142:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2356687-2357114:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2351465-2351599:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2331523-2331703:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2328348-2328545:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2318805-2318909:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2317189-2317384:-1:exon

LOC112444731
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444731
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2413273..2469376
location: region:2413273-2469376:1
so has part: feature:2413273-2469376:1:exon
subclass of: SO_0000011

112444731
type: Gene
SIO_000068: ncbigene

position:2413273:1
position: 2413273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2469376:1
position: 2469376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2413273-2469376:1:exon

LOC112444731
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC112444731
product: uncharacterized LOC112444731
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_003033080.1
SIO_010081: LOC112444731
subclass of: SO_0000673
so part of: LOC112444731
location: join(2413273..2413946,2467602..2467714,2468814..2469376)
location: region:2413273-2469376:1
so has part: feature:2413273-2413946:1:exon
so has part: feature:2467602-2467714:1:exon
so has part: feature:2468814-2469376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2413273-2413946:1:exon

position:2413946:1
position: 2413946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2467602-2467714:1:exon

position:2467602:1
position: 2467602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2467714:1
position: 2467714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2468814-2469376:1:exon

position:2468814:1
position: 2468814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100337323
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC100337323
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2843489..2891331)
location: region:2843489-2891331:-1
so has part: feature:2843489-2891331:-1:exon
subclass of: SO_0000010

100337323
type: Gene
SIO_000068: ncbigene

position:2843489:-1
position: 2843489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2891331:-1
position: 2891331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2843489-2891331:-1:exon

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003033073.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2880409,2882975..2883122,2883401..2883451,2887635..2887838,2891086..2891331))
location: region:2843489-2891331:-1
so has part: feature:2891086-2891331:-1:exon
so has part: feature:2887635-2887838:-1:exon
so has part: feature:2883401-2883451:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2879769-2880409:-1:exon
so has part: feature:2843489-2845176:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891331:-1:exon

position:2891086:-1
position: 2891086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2887635-2887838:-1:exon

position:2887635:-1
position: 2887635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2887838:-1
position: 2887838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2883401-2883451:-1:exon

position:2883401:-1
position: 2883401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2883451:-1
position: 2883451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2882975-2883122:-1:exon

position:2882975:-1
position: 2882975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2883122:-1
position: 2883122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2879769-2880409:-1:exon

position:2879769:-1
position: 2879769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2880409:-1
position: 2880409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2843489-2845176:-1:exon

position:2845176:-1
position: 2845176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003033075.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2880409,2882975..2883122,2887635..2887838,2891086..2891321))
location: region:2843489-2891321:-1
so has part: feature:2891086-2891321:-1:exon
so has part: feature:2887635-2887838:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2879769-2880409:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2891321:-1
position: 2891321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891321:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2887635-2887838:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2882975-2883122:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2879769-2880409:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_003033074.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2880409,2882975..2883122,2883401..2883451,2891086..2891310))
location: region:2843489-2891310:-1
so has part: feature:2891086-2891310:-1:exon
so has part: feature:2883401-2883451:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2879769-2880409:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2891310:-1
position: 2891310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891310:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2883401-2883451:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2882975-2883122:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2879769-2880409:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_003033069.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2880409,2882975..2883122,2891086..2891248))
location: region:2843489-2891248:-1
so has part: feature:2891086-2891248:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2879769-2880409:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2891248:-1
position: 2891248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891248:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2882975-2883122:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2879769-2880409:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_003033070.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2879988,2882975..2883122,2891086..2891242))
location: region:2843489-2891242:-1
so has part: feature:2891086-2891242:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2879769-2879988:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2891242:-1
position: 2891242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891242:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2882975-2883122:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2879769-2879988:-1:exon

position:2879988:-1
position: 2879988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_003033072.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2879870,2882975..2883122,2891086..2891240))
location: region:2843489-2891240:-1
so has part: feature:2891086-2891240:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2879769-2879870:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2891240:-1
position: 2891240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891240:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2882975-2883122:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2879769-2879870:-1:exon

position:2879870:-1
position: 2879870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_010820441.3
SIO_010081: LOC100337323
subclass of: SO_0000673
so part of: LOC100337323
location: complement(join(2843489..2845176,2891086..2891238))
location: region:2843489-2891238:-1
so has part: feature:2891086-2891238:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2891238:-1
position: 2891238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891238:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XR_003033071.1
SIO_010081: LOC100337323
so part of: LOC100337323
location: complement(join(2843489..2845176,2882975..2883122,2891086..2891238))
location: region:2843489-2891238:-1
so has part: feature:2891086-2891238:-1:exon
so has part: feature:2882975-2883122:-1:exon
so has part: feature:2843489-2845176:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2891086-2891238:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2882975-2883122:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC100337323
product: uncharacterized LOC100337323, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
transcript id: XM_010820439.3
SIO_010081: LOC100337323
subclass of: SO_0000673
so part of: LOC100337323
location: complement(join(2843489..2845176,2879769..2880691))
location: region:2843489-2880691:-1
so has part: feature:2879769-2880691:-1:exon
so has part: feature:2843489-2845176:-1:exon

position:2880691:-1
position: 2880691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2879769-2880691:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2843489-2845176:-1:exon

LOC100337323
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC100337323
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100337323
translation: MDECQEAVEEWTEPGPGDSPKACPPAEAGCGPSRQECRPKHKGRPKSLNLPPEAKHPANAQRSFKTKTRTSEKRPKCPQEEVGFWLGKQIEGLRGKAFVEPPSQNASQFPMCPVMHGSPGHSCSPIRCRSKCRGNLVEADWQPGLPADTQPPNRAWVLHPLALGVLLWGWSLRLSPLPGWFQSVTGIWYCWQVRTAAASGWGSPAARGSAPSALHRGG
SIO_010081: LOC100337323
subclass of: SO_0000673
so part of: LOC100337323
location: complement(2844109..2844765)
location: region:2844109-2844765:-1
so has part: feature:2844109-2844765:-1:exon

XP_010818741.1
type: Protein
SIO_000068: ncbiprotein

position:2844109:-1
position: 2844109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2844765:-1
position: 2844765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2844109-2844765:-1:exon

LOC100337323
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC100337323
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100337323
translation: MDECQEAVEEWTEPGPGDSPKACPPAEAGCGPSRQECRPKHKGRPKSLNLPPEAKHPANAQRSFKTKTRTSEKRPKCPQEEVGFWLGKQIEGLRGKAFVEPPSQNASQFPMCPVMHGSPGHSCSPIRCRSKCRGNLVEADWQPGLPADTQPPNRAWVLHPLALGVLLWGWSLRLSPLPGWFQSVTGIWYCWQVRTAAASGWGSPAARGSAPSALHRGG
SIO_010081: LOC100337323
subclass of: SO_0000673
so part of: LOC100337323
location: complement(2844109..2844765)
location: region:2844109-2844765:-1
so has part: feature:2844109-2844765:-1:exon

XP_010818743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2844109-2844765:-1:exon

LOC112444759
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444759
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2921728..2940315)
location: region:2921728-2940315:-1
so has part: feature:2921728-2940315:-1:exon
subclass of: SO_0000011

112444759
type: Gene
SIO_000068: ncbigene

position:2921728:-1
position: 2921728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2940315:-1
position: 2940315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2921728-2940315:-1:exon

LOC112444759
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC112444759
product: uncharacterized LOC112444759
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_003033108.1
SIO_010081: LOC112444759
subclass of: SO_0000673
so part of: LOC112444759
location: complement(join(2921728..2921913,2938890..2938945,2940128..2940315))
location: region:2921728-2940315:-1
so has part: feature:2940128-2940315:-1:exon
so has part: feature:2938890-2938945:-1:exon
so has part: feature:2921728-2921913:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2940128-2940315:-1:exon

position:2940128:-1
position: 2940128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2938890-2938945:-1:exon

position:2938890:-1
position: 2938890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2938945:-1
position: 2938945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2921728-2921913:-1:exon

position:2921913:-1
position: 2921913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC614741
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC614741
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2951959..3309676)
location: region:2951959-3309676:-1
so has part: feature:2951959-3309676:-1:exon
subclass of: SO_0000010

614741
type: Gene
SIO_000068: ncbigene

position:2951959:-1
position: 2951959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3309676:-1
position: 3309676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2951959-3309676:-1:exon

LOC614741
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC614741
product: formin-2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 4 long SRA reads, 3 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_024986808.1
SIO_010081: LOC614741
subclass of: SO_0000673
so part of: LOC614741
location: complement(join(2951959..2953465,2954961..2955042,2976725..2976874,3013659..3013710,3021254..3021346,3039434..3039554,3039688..3039747,3044365..3044511,3045314..3045443,3045605..3045696,3093431..3093492,3118028..3118115,3165915..3166059,3167542..3168214,3168247..3169446,3196961..3197016,3206750..3206897,3272937..3273103,3308225..3309676))
location: region:2951959-3309676:-1
so has part: feature:3308225-3309676:-1:exon
so has part: feature:3272937-3273103:-1:exon
so has part: feature:3206750-3206897:-1:exon
so has part: feature:3196961-3197016:-1:exon
so has part: feature:3168247-3169446:-1:exon
so has part: feature:3167542-3168214:-1:exon
so has part: feature:3165915-3166059:-1:exon
so has part: feature:3118028-3118115:-1:exon
so has part: feature:3093431-3093492:-1:exon
so has part: feature:3045605-3045696:-1:exon
so has part: feature:3045314-3045443:-1:exon
so has part: feature:3044365-3044511:-1:exon
so has part: feature:3039688-3039747:-1:exon
so has part: feature:3039434-3039554:-1:exon
so has part: feature:3021254-3021346:-1:exon
so has part: feature:3013659-3013710:-1:exon
so has part: feature:2976725-2976874:-1:exon
so has part: feature:2954961-2955042:-1:exon
so has part: feature:2951959-2953465:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3308225-3309676:-1:exon

position:3308225:-1
position: 3308225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3272937-3273103:-1:exon

position:3272937:-1
position: 3272937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3273103:-1
position: 3273103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3206750-3206897:-1:exon

position:3206750:-1
position: 3206750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3206897:-1
position: 3206897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3196961-3197016:-1:exon

position:3196961:-1
position: 3196961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3197016:-1
position: 3197016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3168247-3169446:-1:exon

position:3168247:-1
position: 3168247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3169446:-1
position: 3169446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3167542-3168214:-1:exon

position:3167542:-1
position: 3167542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3168214:-1
position: 3168214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3165915-3166059:-1:exon

position:3165915:-1
position: 3165915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3166059:-1
position: 3166059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3118028-3118115:-1:exon

position:3118028:-1
position: 3118028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3118115:-1
position: 3118115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3093431-3093492:-1:exon

position:3093431:-1
position: 3093431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3093492:-1
position: 3093492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3045605-3045696:-1:exon

position:3045605:-1
position: 3045605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3045696:-1
position: 3045696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3045314-3045443:-1:exon

position:3045314:-1
position: 3045314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3045443:-1
position: 3045443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3044365-3044511:-1:exon

position:3044365:-1
position: 3044365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3044511:-1
position: 3044511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3039688-3039747:-1:exon

position:3039688:-1
position: 3039688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3039747:-1
position: 3039747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3039434-3039554:-1:exon

position:3039434:-1
position: 3039434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3039554:-1
position: 3039554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3021254-3021346:-1:exon

position:3021254:-1
position: 3021254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3021346:-1
position: 3021346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3013659-3013710:-1:exon

position:3013659:-1
position: 3013659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3013710:-1
position: 3013710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2976725-2976874:-1:exon

position:2976725:-1
position: 2976725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2976874:-1
position: 2976874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2954961-2955042:-1:exon

position:2954961:-1
position: 2954961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2955042:-1
position: 2955042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2951959-2953465:-1:exon

position:2953465:-1
position: 2953465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC614741
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC614741
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: formin-2
translation: MGNQDAKPKRSAGDVPHGGGGGEDSAGPREAEGTKKAGGGKKAPGRHGKGGGGAEPGRKKSRSDPRASVFSNLRIRKTLSKGRGTSGSREDVLDPQALQAGELDSAHSLVTKTPDLSLSADETGLSDTECADPFEVTRPGGPSLARVGGPAVAEYSETAAGAQDGQRTSSGSDTDLYSFHSAAEQEDLLSDIQQAIRLQQLQQQSPGPESPPVSPPSTAPLSGALPGLDRPPPGPNAEAALSAPPDRPPAAEPPAATAFASPGSVPGDRGAADTDEEGEEDAFEDAPRDSPGLECGLAAGEAPCTQEATREEGAPKPVVPVAASPPLSPARSPRRPRARPLLAPCYVRTTTRQLSSPGPSPSPSPSHSPRVQRRPESSLGRGSGAPAAPAAAPARKPRAGRSRSADWTAELGRAPGAGVSAHLVQRGAGGFQGVFAGRTLLEKLFSQQENGPPEEAEKFCSRIIAMGLLLPFSDCFREPCGQNAQSSSAPFDQDQLYTWAAVSQPTHSLDYIEGQFPRRVPAAWPPSKPPDEEHRPKDADTDSQSAVLETPKKCSDAAQQEVCDMKSEGQATVIQRLEQTIEDLKTKIAELEKQYPALDTGLEALRLGEKDVGYERIVQAKSIQTSPMEEGGVLARPPGGSPPAPPPLTAHGESTGLPLPSGPQTMFCSEISLVVSPRRISVQLDAQPSLQPPPPASLPWSDSHGQARSQPSHPPLHTGFETSQEHSAFSSSGNGCDIPTAPPLPPETTEASPAPLTPGAPGPALPSPAGLSPPPCLGPEMLPPPPLPLPGVGVPPPPPLPGVGIPPPPPLPTVGIPTPPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPXPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPPPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPSPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPAPPLPGVGIPPPPPLPGVGIPPAPPLPGVGIPPAPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGVGIPPTPPLPGVGIPPPPHLPSEGIPPAPPPPPPPGVGIPPPLTPQPPPPPGSGLPLPRQVGSSTLPTPQVCGFLPPPLPLGLFGFGMNQEKGSRKQPVEPCRPMKPLYWTRIQLHSRRDSSASLIWEKIEEPSIDCHEFEELFSKSTVKERKKPISDTITKTKAKQVVKLLSNKRSQAVGILMSSLHLDMKDIQHAVVNLDNSVVDLETLQALYENRAQSDELEKIEKHGRSSKDKENAKSLDKPEQFLYELSLIPNFSERVFCILFQSTFSESICSIRRKLELLQKLCETLKHGSGVMQVLGLVLAFGNYMNGGNNTRGQADGFGLDILPKLKDVKSSDNSRSLLSYIVSYYLRNFDEDAGKEQCVFPLPEPQDLFQASQMKFEDFQKDLRKLKKDLRACEVEAGKVYQVSSKEHIQPFKENMEQFIIQAKIDQEAEENSLTETHKCFLETTAYFFMRPKIGEKEVSPNVFFGIWHEFSSDFKDFWKKENKLILQERVKEAEEVCRQKKGKSLYKIKPRHDSGIKAKISMKT
SIO_010081: LOC614741
subclass of: SO_0000673
so part of: LOC614741
location: complement(join(2953439..2953465,2954961..2955042,2976725..2976874,3013659..3013710,3021254..3021346,3039434..3039554,3039688..3039747,3044365..3044511,3045314..3045443,3045605..3045696,3093431..3093492,3118028..3118115,3165915..3166059,3167542..3168214,3168247..3169446,3196961..3197016,3206750..3206897,3272937..3273103,3308225..3309533))
location: region:2953439-3309533:-1
so has part: feature:3308225-3309533:-1:exon
so has part: feature:3272937-3273103:-1:exon
so has part: feature:3206750-3206897:-1:exon
so has part: feature:3196961-3197016:-1:exon
so has part: feature:3168247-3169446:-1:exon
so has part: feature:3167542-3168214:-1:exon
so has part: feature:3165915-3166059:-1:exon
so has part: feature:3118028-3118115:-1:exon
so has part: feature:3093431-3093492:-1:exon
so has part: feature:3045605-3045696:-1:exon
so has part: feature:3045314-3045443:-1:exon
so has part: feature:3044365-3044511:-1:exon
so has part: feature:3039688-3039747:-1:exon
so has part: feature:3039434-3039554:-1:exon
so has part: feature:3021254-3021346:-1:exon
so has part: feature:3013659-3013710:-1:exon
so has part: feature:2976725-2976874:-1:exon
so has part: feature:2954961-2955042:-1:exon
so has part: feature:2953439-2953465:-1:exon

XP_024842576.1
type: Protein
SIO_000068: ncbiprotein

position:2953439:-1
position: 2953439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3309533:-1
position: 3309533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3308225-3309533:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3272937-3273103:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3206750-3206897:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3196961-3197016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3168247-3169446:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3167542-3168214:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3165915-3166059:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3118028-3118115:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3093431-3093492:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3045605-3045696:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3045314-3045443:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3044365-3044511:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3039688-3039747:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3039434-3039554:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3021254-3021346:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3013659-3013710:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2976725-2976874:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2954961-2955042:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2953439-2953465:-1:exon

C28H1orf198
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
alternative label: C1orf198
gene: C28H1orf198
gene synonym: C1orf198
note: chromosome 28 open reading frame, human C1orf198; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(3562196..3594264)
location: region:3562196-3594264:-1
so has part: feature:3562196-3594264:-1:exon
subclass of: SO_0000010

616380
type: Gene
SIO_000068: ncbigene

position:3562196:-1
position: 3562196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3594264:-1
position: 3594264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3562196-3594264:-1:exon

C28H1orf198
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf198
gene: C28H1orf198
gene synonym: C1orf198
product: chromosome 28 C1orf198 homolog
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001040592.1
SIO_010081: C28H1orf198
subclass of: SO_0000673
so part of: C28H1orf198
location: complement(join(3562196..3562273,3564756..3565301,3578350..3578400,3593881..3594264))
location: region:3562196-3594264:-1
so has part: feature:3593881-3594264:-1:exon
so has part: feature:3578350-3578400:-1:exon
so has part: feature:3564756-3565301:-1:exon
so has part: feature:3562196-3562273:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3593881-3594264:-1:exon

position:3593881:-1
position: 3593881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3578350-3578400:-1:exon

position:3578350:-1
position: 3578350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3578400:-1
position: 3578400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3564756-3565301:-1:exon

position:3564756:-1
position: 3564756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3565301:-1
position: 3565301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3562196-3562273:-1:exon

position:3562273:-1
position: 3562273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C28H1orf198
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf198
gene: C28H1orf198
gene synonym: C1orf198
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: uncharacterized protein C1orf198 homolog
translation: MASMAAAIAASRTAVMSANRPLDDRERKRFTYFSSLSPMARKIMQDKEKIREKYGPEWARLPPAQQDEIIDRCLVGPSASAPGDPEELARFPGLRGPTGQKVVRFGDEDITWQDEHSAPFSWETRSQMEFSISSLSIQEPSCSTAGEPRPPSKAPQGSQALRAPQGGKSSSLDALGPAWKEEEASFWKINAERSRGEGPEAEFQSLTPSQIKSMEKGEKVLPGCYRQEPAPRAREAKAEKPSPLRQEQRAAPSVSTECERPQPAQACASPPSEAGPSGPMGKPVSPEVMEAVEDMEDALFLEPVPVQVSSSNVILKTGFDFLDNW
SIO_010081: C28H1orf198
subclass of: SO_0000673
so part of: C28H1orf198
location: complement(join(3562217..3562273,3564756..3565301,3578350..3578400,3593881..3594204))
location: region:3562217-3594204:-1
so has part: feature:3593881-3594204:-1:exon
so has part: feature:3578350-3578400:-1:exon
so has part: feature:3564756-3565301:-1:exon
so has part: feature:3562217-3562273:-1:exon

NP_001035682.1
type: Protein
SIO_000068: ncbiprotein

position:3562217:-1
position: 3562217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3594204:-1
position: 3594204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3593881-3594204:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3578350-3578400:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3564756-3565301:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3562217-3562273:-1:exon

TTC13
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TTC13
note: tetratricopeptide repeat domain 13; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: complement(3609734..3714466)
location: region:3609734-3714466:-1
so has part: feature:3609734-3714466:-1:exon
subclass of: SO_0000010

519575
type: Gene
SIO_000068: ncbigene

position:3609734:-1
position: 3609734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3714466:-1
position: 3714466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3609734-3714466:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_024986659.1
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3609734..3609776,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714439))
location: region:3609734-3714439:-1
so has part: feature:3714120-3714439:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3609734-3609776:-1:exon

position:3714439:-1
position: 3714439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714439:-1:exon

position:3714120:-1
position: 3714120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

position:3696427:-1
position: 3696427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3696521:-1
position: 3696521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

position:3692831:-1
position: 3692831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3692906:-1
position: 3692906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

position:3689424:-1
position: 3689424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3689494:-1
position: 3689494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

position:3679395:-1
position: 3679395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3679460:-1
position: 3679460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

position:3677772:-1
position: 3677772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3677864:-1
position: 3677864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

position:3674968:-1
position: 3674968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3675084:-1
position: 3675084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

position:3673889:-1
position: 3673889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3673999:-1
position: 3673999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

position:3668462:-1
position: 3668462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3668544:-1
position: 3668544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

position:3666618:-1
position: 3666618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3666759:-1
position: 3666759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

position:3665485:-1
position: 3665485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3665659:-1
position: 3665659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

position:3663449:-1
position: 3663449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3663605:-1
position: 3663605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

position:3651909:-1
position: 3651909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3652039:-1
position: 3652039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

position:3651257:-1
position: 3651257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3651389:-1
position: 3651389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

position:3650656:-1
position: 3650656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3650748:-1
position: 3650748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

position:3647818:-1
position: 3647818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3647901:-1
position: 3647901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

position:3646911:-1
position: 3646911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3646995:-1
position: 3646995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643512:-1:exon

position:3643403:-1
position: 3643403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3643512:-1
position: 3643512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

position:3640678:-1
position: 3640678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3640813:-1
position: 3640813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

position:3639259:-1
position: 3639259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3639338:-1
position: 3639338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

position:3636598:-1
position: 3636598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3636676:-1
position: 3636676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

position:3636391:-1
position: 3636391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3636470:-1
position: 3636470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:3609734-3609776:-1:exon

position:3609776:-1
position: 3609776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X3
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSFRFLKAVV
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3609749..3609776,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3609749-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3609749-3609776:-1:exon

XP_024842427.1
type: Protein
SIO_000068: ncbiprotein

position:3609749:-1
position: 3609749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3714384:-1
position: 3714384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3609749-3609776:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_010820422.3
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3615612..3615778,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714440))
location: region:3615612-3714440:-1
so has part: feature:3714120-3714440:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3615612-3615778:-1:exon

position:3615612:-1
position: 3615612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3714440:-1
position: 3714440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714440:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3615612-3615778:-1:exon

position:3615778:-1
position: 3615778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X2
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKRQTSQPMENTQTCNND
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3615730..3615778,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3615730-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3615730-3615778:-1:exon

XP_010818724.1
type: Protein
SIO_000068: ncbiprotein

position:3615730:-1
position: 3615730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3615730-3615778:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001205860.1
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3633670..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3633670-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
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so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
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so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3633670-3634458:-1:exon

position:3633670:-1
position: 3633670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3633670-3634458:-1:exon

position:3634458:-1
position: 3634458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 118 samples with support for all annotated introns
transcript id: XM_005226220.4
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3633673..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643509,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714439))
location: region:3633673-3714439:-1
so has part: feature:3714120-3714439:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
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so has part: feature:3647818-3647901:-1:exon
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so has part: feature:3643403-3643509:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3633673-3634458:-1:exon

position:3633673:-1
position: 3633673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714439:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
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urn:…
SIO_000300: 4
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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
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urn:…
SIO_000300: 9
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urn:…
SIO_000300: 10
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 11
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urn:…
SIO_000300: 12
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3643403-3643509:-1:exon

position:3643509:-1
position: 3643509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3633673-3634458:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_024986660.1
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3633673..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714439))
location: region:3633673-3714439:-1
so has part: feature:3714120-3714439:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3674968-3675084:-1:exon
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so has part: feature:3668462-3668544:-1:exon
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so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
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so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
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so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714439:-1:exon

urn:…
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SIO_000300: 3
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SIO_000300: 4
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SIO_000300: 5
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SIO_000300: 6
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SIO_000300: 12
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SIO_000300: 13
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SIO_000300: 14
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SIO_000300: 15
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 18
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urn:…
SIO_000300: 19
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urn:…
SIO_000300: 20
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urn:…
SIO_000300: 21
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urn:…
SIO_000300: 22
SIO_000628: feature:3633673-3634458:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 109 samples with support for all annotated introns
transcript id: XM_005226217.4
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3633673..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643509,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714439))
location: region:3633673-3714439:-1
so has part: feature:3714120-3714439:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
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so has part: feature:3673889-3673999:-1:exon
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urn:…
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SIO_000300: 5
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SIO_000300: 6
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SIO_000300: 8
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SIO_000300: 11
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SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

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SIO_000300: 13
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urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
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urn:…
SIO_000300: 18
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urn:…
SIO_000300: 19
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urn:…
SIO_000300: 20
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urn:…
SIO_000300: 21
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urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3633673-3634458:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_015460932.2
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3633673..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3690514..3690612,3692831..3692906))
location: region:3633673-3692906:-1
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3690514-3690612:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3690514-3690612:-1:exon

position:3690514:-1
position: 3690514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3690612:-1
position: 3690612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3689424-3689494:-1:exon

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SIO_000300: 10
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 14
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SIO_000300: 16
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urn:…
SIO_000300: 17
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SIO_000300: 18
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SIO_000300: 19
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urn:…
SIO_000300: 20
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urn:…
SIO_000300: 21
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3633673-3634458:-1:exon

TTC13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TTC13
product: tetratricopeptide repeat domain 13, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 2 long SRA reads, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 120 samples with support for all annotated introns
transcript id: XM_005226219.4
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634002..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714466))
location: region:3634002-3714466:-1
so has part: feature:3714120-3714466:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
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so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634002-3634458:-1:exon

position:3634002:-1
position: 3634002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714466:-1:exon

urn:…
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SIO_000628: feature:3696427-3696521:-1:exon

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SIO_000628: feature:3692831-3692906:-1:exon

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SIO_000628: feature:3666618-3666759:-1:exon

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SIO_000628: feature:3663449-3663605:-1:exon

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SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3651257-3651389:-1:exon

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SIO_000628: feature:3650656-3650748:-1:exon

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urn:…
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SIO_000628: feature:3646911-3646995:-1:exon

urn:…
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urn:…
SIO_000300: 17
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3634002-3634458:-1:exon

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X6
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634344..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643509,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3634344-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
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so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643509:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634344-3634458:-1:exon

XP_005226277.1
type: Protein
SIO_000068: ncbiprotein

position:3634344:-1
position: 3634344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3643403-3643509:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3634344-3634458:-1:exon

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X5
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634344..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3634344-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634344-3634458:-1:exon

XP_005226276.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3634344-3634458:-1:exon

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X4
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634344..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3634344-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634344-3634458:-1:exon

XP_024842428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3634344-3634458:-1:exon

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X1
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634344..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643509,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3634344-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643509:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634344-3634458:-1:exon

XP_005226274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643509:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3634344-3634458:-1:exon

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: tetratricopeptide repeat protein 13 precursor
translation: MAPAGCCCGGCWGGAVAAADAARSVLVLLLLGVLSAGPGPGALATEHYSPLSLLKQELQHRQQQEAPAGGGCSPQSGDWGDQYSAECGESSFLNFHDSDCEPKGSPPCDSLLSLNTEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLIGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634344..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689494,3692831..3692906,3696427..3696521,3714120..3714384))
location: region:3634344-3714384:-1
so has part: feature:3714120-3714384:-1:exon
so has part: feature:3696427-3696521:-1:exon
so has part: feature:3692831-3692906:-1:exon
so has part: feature:3689424-3689494:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634344-3634458:-1:exon

NP_001192789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3714120-3714384:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3696427-3696521:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3692831-3692906:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3689424-3689494:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3634344-3634458:-1:exon

TTC13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TTC13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 13 isoform X7
translation: MLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEPDRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGNFEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLHEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKAQTKVMLNDPLPGQKASPEYLKVKYLREYSRYLHAHLDTPLTEYNIDVDLPGSFKDHWAKNLPFLIEDYEEQPGLQPHIKDVLHQNFESYKPEVQELICVADRLGSLMQYETPGFLPNKRIHRAMGLAALEVMQAVQRTWTNSKVRMNGKTRLMQWRDMFDIAVKWRRIADPDQPVLWLDQMPAQSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKGLLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKIAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSSPRCLKKL
SIO_010081: TTC13
subclass of: SO_0000673
so part of: TTC13
location: complement(join(3634344..3634458,3636391..3636470,3636598..3636676,3639259..3639338,3640678..3640813,3643403..3643512,3646911..3646995,3647818..3647901,3650656..3650748,3651257..3651389,3651909..3652039,3663449..3663605,3665485..3665659,3666618..3666759,3668462..3668544,3673889..3673999,3674968..3675084,3677772..3677864,3679395..3679460,3689424..3689432))
location: region:3634344-3689432:-1
so has part: feature:3689424-3689432:-1:exon
so has part: feature:3679395-3679460:-1:exon
so has part: feature:3677772-3677864:-1:exon
so has part: feature:3674968-3675084:-1:exon
so has part: feature:3673889-3673999:-1:exon
so has part: feature:3668462-3668544:-1:exon
so has part: feature:3666618-3666759:-1:exon
so has part: feature:3665485-3665659:-1:exon
so has part: feature:3663449-3663605:-1:exon
so has part: feature:3651909-3652039:-1:exon
so has part: feature:3651257-3651389:-1:exon
so has part: feature:3650656-3650748:-1:exon
so has part: feature:3647818-3647901:-1:exon
so has part: feature:3646911-3646995:-1:exon
so has part: feature:3643403-3643512:-1:exon
so has part: feature:3640678-3640813:-1:exon
so has part: feature:3639259-3639338:-1:exon
so has part: feature:3636598-3636676:-1:exon
so has part: feature:3636391-3636470:-1:exon
so has part: feature:3634344-3634458:-1:exon

XP_015316418.1
type: Protein
SIO_000068: ncbiprotein

position:3689432:-1
position: 3689432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3689424-3689432:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3679395-3679460:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3677772-3677864:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3674968-3675084:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3673889-3673999:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3668462-3668544:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3666618-3666759:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3665485-3665659:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3663449-3663605:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3651909-3652039:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3651257-3651389:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3650656-3650748:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3647818-3647901:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3646911-3646995:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3643403-3643512:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3640678-3640813:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3639259-3639338:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3636598-3636676:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3636391-3636470:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3634344-3634458:-1:exon

ARV1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: ARV1
note: ARV1 homolog, fatty acid homeostasis modulator; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 3714651..3737767
location: region:3714651-3737767:1
so has part: feature:3714651-3737767:1:exon
subclass of: SO_0000010

515046
type: Gene
SIO_000068: ncbigene

position:3714651:1
position: 3714651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3737767:1
position: 3737767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714651-3737767:1:exon

ARV1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: ARV1
product: ARV1 homolog, fatty acid homeostasis modulator
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001035302.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001035302.2
SIO_010081: ARV1
subclass of: SO_0000673
so part of: ARV1
location: join(3714651..3714872,3723669..3723788,3726333..3726486,3732891..3733115,3734411..3734557,3737325..3737767)
location: region:3714651-3737767:1
so has part: feature:3714651-3714872:1:exon
so has part: feature:3723669-3723788:1:exon
so has part: feature:3726333-3726486:1:exon
so has part: feature:3732891-3733115:1:exon
so has part: feature:3734411-3734557:1:exon
so has part: feature:3737325-3737767:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3714651-3714872:1:exon

position:3714872:1
position: 3714872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3723669-3723788:1:exon

position:3723669:1
position: 3723669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3723788:1
position: 3723788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3726333-3726486:1:exon

position:3726333:1
position: 3726333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3726486:1
position: 3726486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3732891-3733115:1:exon

position:3732891:1
position: 3732891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3733115:1
position: 3733115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3734411-3734557:1:exon

position:3734411:1
position: 3734411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3734557:1
position: 3734557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3737325-3737767:1:exon

position:3737325:1
position: 3737325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ARV1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: ARV1
inference: similar to AA sequence (same species):RefSeq:NP_001030379.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: protein ARV1
translation: MGTGGQNGLRPGKGNTEGVKEGKGKTDEVTMTSNTDASASCQYRCIECNQEAKELYRDYNHGVLKITICKSCQKPVDKYIEYDPVIILINAILCKAQAYRHILFNTKINMHGKLCVFCLLCEAYLRWWQLQDSSQSIDPDDFIRYAKEWDFYRMFAIASLEQTAYFIGIFAFLWVERPIRAKEKLNFTLLLKALLLSSYGKLLLIPAVIWEHDYTPLCLRLIKVFVLTSNFQAIRVTLNINRKLAFLAILSGLLVESTMVYFFQRMEWAVGSDCAIYKSQDF
SIO_010081: ARV1
subclass of: SO_0000673
so part of: ARV1
location: join(3714666..3714872,3723669..3723788,3726333..3726486,3732891..3733115,3734411..3734553)
location: region:3714666-3734553:1
so has part: feature:3714666-3714872:1:exon
so has part: feature:3723669-3723788:1:exon
so has part: feature:3726333-3726486:1:exon
so has part: feature:3732891-3733115:1:exon
so has part: feature:3734411-3734553:1:exon

NP_001030379.1
type: Protein
SIO_000068: ncbiprotein

position:3714666:1
position: 3714666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3734553:1
position: 3734553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714666-3714872:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3723669-3723788:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3726333-3726486:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3732891-3733115:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3734411-3734553:1:exon

FAM89A
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: FAM89A
note: family with sequence similarity 89 member A; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(3750980..3770591)
location: region:3750980-3770591:-1
so has part: feature:3750980-3770591:-1:exon
subclass of: SO_0000010

616421
type: Gene
SIO_000068: ncbigene

position:3750980:-1
position: 3750980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3770591:-1
position: 3770591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3750980-3770591:-1:exon

FAM89A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: FAM89A
product: family with sequence similarity 89 member A
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001101257.1
SIO_010081: FAM89A
subclass of: SO_0000673
so part of: FAM89A
location: complement(join(3750980..3752068,3770278..3770591))
location: region:3750980-3770591:-1
so has part: feature:3770278-3770591:-1:exon
so has part: feature:3750980-3752068:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3770278-3770591:-1:exon

position:3770278:-1
position: 3770278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3750980-3752068:-1:exon

position:3752068:-1
position: 3752068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FAM89A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: FAM89A
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: protein FAM89A
translation: MSGAGAAGSVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQKSRIQDELSRGSAGGGGARAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQEYKGACQAAASPDSTYALENGFFDEEDEYFQEQNSLQDGKERGPPRDLMLPVSPLPSGDWILESI
SIO_010081: FAM89A
subclass of: SO_0000673
so part of: FAM89A
location: complement(join(3751805..3752068,3770278..3770550))
location: region:3751805-3770550:-1
so has part: feature:3770278-3770550:-1:exon
so has part: feature:3751805-3752068:-1:exon

NP_001094727.1
type: Protein
SIO_000068: ncbiprotein

position:3751805:-1
position: 3751805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3770550:-1
position: 3770550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3770278-3770550:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3751805-3752068:-1:exon

TRIM67
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRIM67
note: tripartite motif containing 67; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 3905773..3963570
location: region:3905773-3963570:1
so has part: feature:3905773-3963570:1:exon
subclass of: SO_0000010

518459
type: Gene
SIO_000068: ncbigene

position:3905773:1
position: 3905773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3963570:1
position: 3963570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3905773-3963570:1:exon

TRIM67
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TRIM67
product: tripartite motif containing 67
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001206749.1
SIO_010081: TRIM67
subclass of: SO_0000673
so part of: TRIM67
location: join(3905773..3906813,3943961..3944056,3945581..3945703,3946639..3946749,3948184..3948343,3950966..3951111,3958179..3958317,3959660..3959963,3961755..3961917,3963505..3963570)
location: region:3905773-3963570:1
so has part: feature:3905773-3906813:1:exon
so has part: feature:3943961-3944056:1:exon
so has part: feature:3945581-3945703:1:exon
so has part: feature:3946639-3946749:1:exon
so has part: feature:3948184-3948343:1:exon
so has part: feature:3950966-3951111:1:exon
so has part: feature:3958179-3958317:1:exon
so has part: feature:3959660-3959963:1:exon
so has part: feature:3961755-3961917:1:exon
so has part: feature:3963505-3963570:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3905773-3906813:1:exon

position:3906813:1
position: 3906813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3943961-3944056:1:exon

position:3943961:1
position: 3943961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3944056:1
position: 3944056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3945581-3945703:1:exon

position:3945581:1
position: 3945581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3945703:1
position: 3945703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3946639-3946749:1:exon

position:3946639:1
position: 3946639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3946749:1
position: 3946749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3948184-3948343:1:exon

position:3948184:1
position: 3948184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3948343:1
position: 3948343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3950966-3951111:1:exon

position:3950966:1
position: 3950966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3951111:1
position: 3951111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3958179-3958317:1:exon

position:3958179:1
position: 3958179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3958317:1
position: 3958317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3959660-3959963:1:exon

position:3959660:1
position: 3959660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3959963:1
position: 3959963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3961755-3961917:1:exon

position:3961755:1
position: 3961755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3961917:1
position: 3961917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3963505-3963570:1:exon

position:3963505:1
position: 3963505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRIM67
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TRIM67
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: tripartite motif-containing protein 67
translation: MEEELKCPVCGSLFREPIILPCSHNVCLPCARTIAVQTPDGEQHLPPPLLHSRGSALSSGAAAAPPLDQEAAAGPACSGAGGSAAGGLGGGAGGGSDHADKLSLYSETDSGYGSYTPSLKSPNGVRVLPMVPAPPGSSAAAARGAACSSLSSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEAIVQRYQQGRGAAPGASAVTAVAICQLCDRTPPEPAATLCEQCDVLYCAACQLKCHPSRGPFAKHRLVQPPPPPAPSEVASGSPGAVQGAPSGSGGCKSPGATGAGAAGGNTARKYPTCPEHEMENYSMYCLTCRTPVCYLCLEEGRHGKHEVKPLGAMWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGLDYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTLKLRQSTGLMEYCLEVIKENDPAGFLQISDALIKRVQVSQEQWVKGALEPKVSAEFELTLDSEPLLQAIHQLDFIQMKCRVPPVPLLQLEKCCTRNNSVTLAWRTPPFTHSPVDGYILELDDGDGGQFREVYVGKETLCTIDGLHFNSTYNARVKAFNSSGVGPYSKTVVLQTSDVAWFTFDPNSGHRDIILSNDNQTATCSSYDDRVVLGTAAFSKGAHYWELHVDRYDNHPDPAFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCKGATVGVLLDLNKHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVPTNLGRPKLSGN
SIO_010081: TRIM67
subclass of: SO_0000673
so part of: TRIM67
location: join(3905773..3906813,3943961..3944056,3945581..3945703,3946639..3946749,3948184..3948343,3950966..3951111,3958179..3958317,3959660..3959963,3961755..3961917,3963505..3963570)
location: region:3905773-3963570:1
so has part: feature:3905773-3906813:1:exon
so has part: feature:3943961-3944056:1:exon
so has part: feature:3945581-3945703:1:exon
so has part: feature:3946639-3946749:1:exon
so has part: feature:3948184-3948343:1:exon
so has part: feature:3950966-3951111:1:exon
so has part: feature:3958179-3958317:1:exon
so has part: feature:3959660-3959963:1:exon
so has part: feature:3961755-3961917:1:exon
so has part: feature:3963505-3963570:1:exon

NP_001193678.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3905773-3906813:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3943961-3944056:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3945581-3945703:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3946639-3946749:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3948184-3948343:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3950966-3951111:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3958179-3958317:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3959660-3959963:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3961755-3961917:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3963505-3963570:1:exon

C28H1orf131
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: C28H1orf131
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3972261..>4004931)
location: region:3972261-4004931:-1
so has part: feature:3972261-4004931:-1:exon
subclass of: SO_0000010

514234
type: Gene
SIO_000068: ncbigene

position:3972261:-1
position: 3972261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4004931:-1
position: 4004931
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3972261-4004931:-1:exon

C28H1orf131
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: C28H1orf131
product: chromosome 28 C1orf131 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 48 ESTs, 6 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 231 samples with support for all annotated introns
transcript id: XM_002698783.5
SIO_010081: C28H1orf131
subclass of: SO_0000673
so part of: C28H1orf131
location: complement(join(3972261..3973137,3974335..3974387,3974971..3975057,3975188..3975283,3984742..3984807,3999835..4000178,4004721..>4004931))
location: region:3972261-4004931:-1
so has part: feature:4004721-4004931:-1:exon
so has part: feature:3999835-4000178:-1:exon
so has part: feature:3984742-3984807:-1:exon
so has part: feature:3975188-3975283:-1:exon
so has part: feature:3974971-3975057:-1:exon
so has part: feature:3974335-3974387:-1:exon
so has part: feature:3972261-3973137:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4004721-4004931:-1:exon

position:4004721:-1
position: 4004721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3999835-4000178:-1:exon

position:3999835:-1
position: 3999835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4000178:-1
position: 4000178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3984742-3984807:-1:exon

position:3984742:-1
position: 3984742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3984807:-1
position: 3984807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3975188-3975283:-1:exon

position:3975188:-1
position: 3975188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3975283:-1
position: 3975283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3974971-3975057:-1:exon

position:3974971:-1
position: 3974971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3975057:-1
position: 3975057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3974335-3974387:-1:exon

position:3974335:-1
position: 3974335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3974387:-1
position: 3974387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3972261-3973137:-1:exon

position:3973137:-1
position: 3973137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C28H1orf131
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: C28H1orf131
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C1orf131 homolog
translation: PGRKPRRDLRRAQPVGNRKRTPSGGRSARSALSCCGPLASRWLRRPRLAISGPPGSQALLDSLLQNLYDFGETEDETEEKRVRKKREKKRGTGTLASLATEPAPQPESLVRGQRKNAASFFQELQEELQGAPAVTPKGSPVGPVVSGAAAACSPPRNDRELVEVVQFHSRSKKRKQKPDQDENTKTKTKDQNHLDKDVDIQEFNLEKARLEVHRFGITGYGKGKERVLEQERAIMLGARPPKNSYVNYKVLQEHIKEKKAAKEEEKRMAKDTDIFKKKKRKGQEDRKSKKKKSAPSILSSGRIGQVGKFKNGTLILSQVDIKKINSSRVAK
SIO_010081: C28H1orf131
subclass of: SO_0000673
so part of: C28H1orf131
location: complement(join(3972999..3973137,3974335..3974387,3974971..3975057,3975188..3975283,3984742..3984807,3999835..4000178,4004721..>4004931))
location: region:3972999-4004931:-1
so has part: feature:4004721-4004931:-1:exon
so has part: feature:3999835-4000178:-1:exon
so has part: feature:3984742-3984807:-1:exon
so has part: feature:3975188-3975283:-1:exon
so has part: feature:3974971-3975057:-1:exon
so has part: feature:3974335-3974387:-1:exon
so has part: feature:3972999-3973137:-1:exon

XP_002698829.2
type: Protein
SIO_000068: ncbiprotein

position:3972999:-1
position: 3972999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4004721-4004931:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3999835-4000178:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3984742-3984807:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3975188-3975283:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3974971-3975057:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3974335-3974387:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3972999-3973137:-1:exon

GNPAT
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: GNPAT
note: glyceronephosphate O-acyltransferase; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 4004919..4045613
location: region:4004919-4045613:1
so has part: feature:4004919-4045613:1:exon
subclass of: SO_0000010

538800
type: Gene
SIO_000068: ncbigene

position:4004919:1
position: 4004919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4045613:1
position: 4045613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4004919-4045613:1:exon

GNPAT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: GNPAT
product: glyceronephosphate O-acyltransferase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 ESTs, 15 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
transcript id: XM_024986721.1
SIO_010081: GNPAT
subclass of: SO_0000673
so part of: GNPAT
location: join(4004919..4005167,4016688..4016870,4017558..4017660,4024540..4024716,4026885..4027014,4030570..4030697,4031010..4031085,4031353..4031504,4031623..4031753,4033158..4033381,4036599..4036841,4038640..4038719,4039593..4039733,4040001..4040100,4040184..4040277,4040886..4040947,4045310..4045613)
location: region:4004919-4045613:1
so has part: feature:4004919-4005167:1:exon
so has part: feature:4016688-4016870:1:exon
so has part: feature:4017558-4017660:1:exon
so has part: feature:4024540-4024716:1:exon
so has part: feature:4026885-4027014:1:exon
so has part: feature:4030570-4030697:1:exon
so has part: feature:4031010-4031085:1:exon
so has part: feature:4031353-4031504:1:exon
so has part: feature:4031623-4031753:1:exon
so has part: feature:4033158-4033381:1:exon
so has part: feature:4036599-4036841:1:exon
so has part: feature:4038640-4038719:1:exon
so has part: feature:4039593-4039733:1:exon
so has part: feature:4040001-4040100:1:exon
so has part: feature:4040184-4040277:1:exon
so has part: feature:4040886-4040947:1:exon
so has part: feature:4045310-4045613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4004919-4005167:1:exon

position:4005167:1
position: 4005167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4016688-4016870:1:exon

position:4016688:1
position: 4016688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4016870:1
position: 4016870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4017558-4017660:1:exon

position:4017558:1
position: 4017558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4017660:1
position: 4017660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4024540-4024716:1:exon

position:4024540:1
position: 4024540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4024716:1
position: 4024716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4026885-4027014:1:exon

position:4026885:1
position: 4026885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4027014:1
position: 4027014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4030570-4030697:1:exon

position:4030570:1
position: 4030570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4030697:1
position: 4030697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4031010-4031085:1:exon

position:4031010:1
position: 4031010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4031085:1
position: 4031085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4031353-4031504:1:exon

position:4031353:1
position: 4031353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4031504:1
position: 4031504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4031623-4031753:1:exon

position:4031623:1
position: 4031623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4031753:1
position: 4031753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4033158-4033381:1:exon

position:4033158:1
position: 4033158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4033381:1
position: 4033381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4036599-4036841:1:exon

position:4036599:1
position: 4036599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4036841:1
position: 4036841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4038640-4038719:1:exon

position:4038640:1
position: 4038640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4038719:1
position: 4038719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4039593-4039733:1:exon

position:4039593:1
position: 4039593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4039733:1
position: 4039733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4040001-4040100:1:exon

position:4040001:1
position: 4040001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4040100:1
position: 4040100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4040184-4040277:1:exon

position:4040184:1
position: 4040184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4040277:1
position: 4040277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4040886-4040947:1:exon

position:4040886:1
position: 4040886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4040947:1
position: 4040947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4045310-4045613:1:exon

position:4045310:1
position: 4045310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GNPAT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: GNPAT
product: glyceronephosphate O-acyltransferase
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001103286.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 3 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001103286.1
SIO_010081: GNPAT
subclass of: SO_0000673
so part of: GNPAT
location: join(4004934..4005167,4016688..4016870,4024540..4024716,4026885..4027014,4030570..4030697,4031010..4031085,4031353..4031504,4031623..4031753,4033158..4033381,4036599..4036841,4038640..4038719,4039593..4039733,4040001..4040100,4040184..4040277,4040886..4040947,4045310..4045603)
location: region:4004934-4045603:1
so has part: feature:4004934-4005167:1:exon
so has part: feature:4016688-4016870:1:exon
so has part: feature:4024540-4024716:1:exon
so has part: feature:4026885-4027014:1:exon
so has part: feature:4030570-4030697:1:exon
so has part: feature:4031010-4031085:1:exon
so has part: feature:4031353-4031504:1:exon
so has part: feature:4031623-4031753:1:exon
so has part: feature:4033158-4033381:1:exon
so has part: feature:4036599-4036841:1:exon
so has part: feature:4038640-4038719:1:exon
so has part: feature:4039593-4039733:1:exon
so has part: feature:4040001-4040100:1:exon
so has part: feature:4040184-4040277:1:exon
so has part: feature:4040886-4040947:1:exon
so has part: feature:4045310-4045603:1:exon

position:4004934:1
position: 4004934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4045603:1
position: 4045603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4004934-4005167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4016688-4016870:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4024540-4024716:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4026885-4027014:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4030570-4030697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4031010-4031085:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4031353-4031504:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4031623-4031753:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4033158-4033381:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4036599-4036841:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4038640-4038719:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4039593-4039733:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4040001-4040100:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4040184-4040277:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4040886-4040947:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4045310-4045603:1:exon

GNPAT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: GNPAT
product: glyceronephosphate O-acyltransferase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 ESTs, 13 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 92 samples with support for all annotated introns
transcript id: XM_024986720.1
SIO_010081: GNPAT
subclass of: SO_0000673
so part of: GNPAT
location: join(4004945..4005167,4024540..4024716,4026885..4027014,4030570..4030697,4031010..4031085,4031353..4031504,4031623..4031753,4033158..4033381,4036599..4036841,4038640..4038719,4039593..4039733,4040001..4040100,4040184..4040277,4040886..4040947,4045310..4045613)
location: region:4004945-4045613:1
so has part: feature:4004945-4005167:1:exon
so has part: feature:4024540-4024716:1:exon
so has part: feature:4026885-4027014:1:exon
so has part: feature:4030570-4030697:1:exon
so has part: feature:4031010-4031085:1:exon
so has part: feature:4031353-4031504:1:exon
so has part: feature:4031623-4031753:1:exon
so has part: feature:4033158-4033381:1:exon
so has part: feature:4036599-4036841:1:exon
so has part: feature:4038640-4038719:1:exon
so has part: feature:4039593-4039733:1:exon
so has part: feature:4040001-4040100:1:exon
so has part: feature:4040184-4040277:1:exon
so has part: feature:4040886-4040947:1:exon
so has part: feature:4045310-4045613:1:exon

position:4004945:1
position: 4004945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4004945-4005167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4024540-4024716:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4026885-4027014:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4030570-4030697:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4031010-4031085:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4031353-4031504:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4031623-4031753:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4033158-4033381:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4036599-4036841:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4038640-4038719:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4039593-4039733:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4040001-4040100:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4040184-4040277:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4040886-4040947:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4045310-4045613:1:exon

GNPAT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: GNPAT
inference: similar to AA sequence (same species):RefSeq:NP_001096756.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: dihydroxyacetone phosphate acyltransferase
translation: MDHSSSSNSCFSVGSTSPGAVVLLYSKELKKWDEFEDVLEERRHVSDLKFAMKCYTPLVYKGITPCKPSDIKCSVLNSEEIHYVIKQLSKESLQPVEVLREEACEILDEMSHKLRLGAIRFFAFALSKIFKQIFSKVRVNEEGIQKLQRAIQEHPVVLLPSHRSYIDFLMLSFLLYNYDLPVPVIAAGMDFLGMKMVGELLRMSGAFFMRRTFGGNKLYWAVFSEYVKTMLRNGYAPVEFFLEGTRSRSAKTLTPKFGLLNIVMEPFFKREVFDTYLVPISISYDRILEETLYAYELLGVPKPKESTTGLLKARRILSEKFGNIHVYFGDPVSLRSLAAGRMGRSPYNLVPRYIPQKQSEEMHTFVTEVAYKMQLLQIQNLVLSPWPLIVAVLLQNRPSIDFDALLEKTLWLKGLTQAFGGFLTWPDNEPAEAVIQSSILLHSNIVSLVKDRVILKMECGDSELVDGLIFQHITLLMCLAYRNQLLNVFVRPSLVAMALQMTPGFRKEDVYSCFRFLCSVFSDEFIFLPGNALKDFEEGCYLLCKSEAIQVMTRDILVTEKGNSVLEFLIGLFKPFVESYQIICKYLLNEEEDYFTEKQYFIRVRKFTSQLLDQGASQCYDVLSSDVQKNALAAFVRLGVVEKKKVNNDYIFNVNEPATTKLEEMLGCKTPVGKPATAKL
SIO_010081: GNPAT
subclass of: SO_0000673
so part of: GNPAT
location: join(4005090..4005167,4016688..4016870,4024540..4024716,4026885..4027014,4030570..4030697,4031010..4031085,4031353..4031504,4031623..4031753,4033158..4033381,4036599..4036841,4038640..4038719,4039593..4039733,4040001..4040100,4040184..4040277,4040886..4040947,4045310..4045353)
location: region:4005090-4045353:1
so has part: feature:4005090-4005167:1:exon
so has part: feature:4016688-4016870:1:exon
so has part: feature:4024540-4024716:1:exon
so has part: feature:4026885-4027014:1:exon
so has part: feature:4030570-4030697:1:exon
so has part: feature:4031010-4031085:1:exon
so has part: feature:4031353-4031504:1:exon
so has part: feature:4031623-4031753:1:exon
so has part: feature:4033158-4033381:1:exon
so has part: feature:4036599-4036841:1:exon
so has part: feature:4038640-4038719:1:exon
so has part: feature:4039593-4039733:1:exon
so has part: feature:4040001-4040100:1:exon
so has part: feature:4040184-4040277:1:exon
so has part: feature:4040886-4040947:1:exon
so has part: feature:4045310-4045353:1:exon

NP_001096756.1
type: Protein
SIO_000068: ncbiprotein

position:4005090:1
position: 4005090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4045353:1
position: 4045353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4005090-4005167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4016688-4016870:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4024540-4024716:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4026885-4027014:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4030570-4030697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4031010-4031085:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4031353-4031504:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4031623-4031753:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4033158-4033381:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4036599-4036841:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4038640-4038719:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4039593-4039733:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4040001-4040100:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4040184-4040277:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4040886-4040947:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4045310-4045353:1:exon

GNPAT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: GNPAT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dihydroxyacetone phosphate acyltransferase isoform X1
translation: MDHSSSSNSCFSVGSTSPGAVVLLYSLSKESLQPVEVLREEACEILDEMSHKLRLGAIRFFAFALSKIFKQIFSKVRVNEEGIQKLQRAIQEHPVVLLPSHRSYIDFLMLSFLLYNYDLPVPVIAAGMDFLGMKMVGELLRMSGAFFMRRTFGGNKLYWAVFSEYVKTMLRNGYAPVEFFLEGTRSRSAKTLTPKFGLLNIVMEPFFKREVFDTYLVPISISYDRILEETLYAYELLGVPKPKESTTGLLKARRILSEKFGNIHVYFGDPVSLRSLAAGRMGRSPYNLVPRYIPQKQSEEMHTFVTEVAYKMQLLQIQNLVLSPWPLIVAVLLQNRPSMDFDALLEKTLWLKGLTQAFGGFLTWPDNEPAEAVIQSSILLHSNIVSLVKDRVILKMECGDSELVDGLIFQHITLLMCLAYRNQLLNVFVRPSLVAMALQMTPGFRKEDVYSCFRFLCSVFSDEFIFLPGNALKDFEEGCYLLCKSEAIQVMTRDILVTEKGNSVLEFLIGLFKPFVESYQIICKYLLNEEEDYFTEKQYFIRVRKFTSQLLDQGASQCYDVLSSDVQKNALAAFVRLGVVEKKKVNNDYIFNVNEPATTKLEEMLGCKTPVGKPATAKL
SIO_010081: GNPAT
subclass of: SO_0000673
so part of: GNPAT
location: join(4005090..4005167,4024540..4024716,4026885..4027014,4030570..4030697,4031010..4031085,4031353..4031504,4031623..4031753,4033158..4033381,4036599..4036841,4038640..4038719,4039593..4039733,4040001..4040100,4040184..4040277,4040886..4040947,4045310..4045353)
location: region:4005090-4045353:1
so has part: feature:4005090-4005167:1:exon
so has part: feature:4024540-4024716:1:exon
so has part: feature:4026885-4027014:1:exon
so has part: feature:4030570-4030697:1:exon
so has part: feature:4031010-4031085:1:exon
so has part: feature:4031353-4031504:1:exon
so has part: feature:4031623-4031753:1:exon
so has part: feature:4033158-4033381:1:exon
so has part: feature:4036599-4036841:1:exon
so has part: feature:4038640-4038719:1:exon
so has part: feature:4039593-4039733:1:exon
so has part: feature:4040001-4040100:1:exon
so has part: feature:4040184-4040277:1:exon
so has part: feature:4040886-4040947:1:exon
so has part: feature:4045310-4045353:1:exon

XP_024842488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4005090-4005167:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4024540-4024716:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4026885-4027014:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4030570-4030697:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4031010-4031085:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4031353-4031504:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4031623-4031753:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4033158-4033381:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4036599-4036841:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4038640-4038719:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4039593-4039733:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4040001-4040100:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4040184-4040277:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4040886-4040947:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4045310-4045353:1:exon

GNPAT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: GNPAT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dihydroxyacetone phosphate acyltransferase isoform X2
translation: MSHKLRLGAIRFFAFALSKIFKQIFSKVRVNEEGIQKLQRAIQEHPVVLLPSHRSYIDFLMLSFLLYNYDLPVPVIAAGMDFLGMKMVGELLRMSGAFFMRRTFGGNKLYWAVFSEYVKTMLRNGYAPVEFFLEGTRSRSAKTLTPKFGLLNIVMEPFFKREVFDTYLVPISISYDRILEETLYAYELLGVPKPKESTTGLLKARRILSEKFGNIHVYFGDPVSLRSLAAGRMGRSPYNLVPRYIPQKQSEEMHTFVTEVAYKMQLLQIQNLVLSPWPLIVAVLLQNRPSMDFDALLEKTLWLKGLTQAFGGFLTWPDNEPAEAVIQSSILLHSNIVSLVKDRVILKMECGDSELVDGLIFQHITLLMCLAYRNQLLNVFVRPSLVAMALQMTPGFRKEDVYSCFRFLCSVFSDEFIFLPGNALKDFEEGCYLLCKSEAIQVMTRDILVTEKGNSVLEFLIGLFKPFVESYQIICKYLLNEEEDYFTEKQYFIRVRKFTSQLLDQGASQCYDVLSSDVQKNALAAFVRLGVVEKKKVNNDYIFNVNEPATTKLEEMLGCKTPVGKPATAKL
SIO_010081: GNPAT
subclass of: SO_0000673
so part of: GNPAT
location: join(4024606..4024716,4026885..4027014,4030570..4030697,4031010..4031085,4031353..4031504,4031623..4031753,4033158..4033381,4036599..4036841,4038640..4038719,4039593..4039733,4040001..4040100,4040184..4040277,4040886..4040947,4045310..4045353)
location: region:4024606-4045353:1
so has part: feature:4024606-4024716:1:exon
so has part: feature:4026885-4027014:1:exon
so has part: feature:4030570-4030697:1:exon
so has part: feature:4031010-4031085:1:exon
so has part: feature:4031353-4031504:1:exon
so has part: feature:4031623-4031753:1:exon
so has part: feature:4033158-4033381:1:exon
so has part: feature:4036599-4036841:1:exon
so has part: feature:4038640-4038719:1:exon
so has part: feature:4039593-4039733:1:exon
so has part: feature:4040001-4040100:1:exon
so has part: feature:4040184-4040277:1:exon
so has part: feature:4040886-4040947:1:exon
so has part: feature:4045310-4045353:1:exon

XP_024842489.1
type: Protein
SIO_000068: ncbiprotein

position:4024606:1
position: 4024606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4024606-4024716:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4026885-4027014:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4030570-4030697:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4031010-4031085:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4031353-4031504:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4031623-4031753:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4033158-4033381:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4036599-4036841:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4038640-4038719:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4039593-4039733:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4040001-4040100:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4040184-4040277:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4040886-4040947:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4045310-4045353:1:exon

EXOC8
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: EXOC8
note: exocyst complex component 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(4062688..4065152)
location: region:4062688-4065152:-1
so has part: feature:4062688-4065152:-1:exon
subclass of: SO_0000010

540237
type: Gene
SIO_000068: ncbigene

position:4062688:-1
position: 4062688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4065152:-1
position: 4065152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4062688-4065152:-1:exon

EXOC8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: EXOC8
product: exocyst complex component 8
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001098112.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001098112.2
SIO_010081: EXOC8
subclass of: SO_0000673
so part of: EXOC8
location: complement(4062688..4065152)
location: region:4062688-4065152:-1
so has part: feature:4062688-4065152:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4062688-4065152:-1:exon

EXOC8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: EXOC8
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: exocyst complex component 8
translation: MAMAMSDSGASRLRRQLESGGFEARLYVKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQLSHLLTEQKSSLESIPLTLLPAAAAAGAAAASGGEEGGGGAGGRDQLRGQTGFFPSPGGASRDGSGPGEEGKQRTLTTLLEKVEGCRHLLETPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDGLAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSEKRRREQEEAAAPRGPPQVTPKASNPFEDEDDDEPTVPEIEEEKVDLSMEWIQELPEDLDVCIAQRDFEGAVDLLDKLNHYLEDKPSPPPVKELRARVDERVRQLTEVLVFELSPDRSLRGGPKATRRAVSQLIRLGQCTKACELFLRNRAAAVHTAIRQLRIEGATLLYIHKLCHVFFTSLLETAREFETDFAGTDSGCYSAFVVWARSAMGMFVDAFSKQVFDSKESLSTAAECVRVAKEHCQQLGDIGLDLTFIVHALLVKDIQGALHSYKEIIIEATKHRNSEEMWRRMNLMTPEALGKLKEEMKSCGVSNFEQYTGDDCWVNLSYTVVAFTKQTMGFLEEALKLYFPELHMVLLESLVEIILVAVQHVDYSLRCEQDPEKKAFIRQNASFLYETVLPVVEKRFEEGVGKPAKQLQDLRNASRLIRVNPESTTSVV
SIO_010081: EXOC8
subclass of: SO_0000673
so part of: EXOC8
location: complement(4062832..4065009)
location: region:4062832-4065009:-1
so has part: feature:4062832-4065009:-1:exon

NP_001091581.1
type: Protein
SIO_000068: ncbiprotein

position:4062832:-1
position: 4062832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4065009:-1
position: 4065009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4062832-4065009:-1:exon

SPRTN
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
note: SprT-like N-terminal domain; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 4065214..4076918
location: region:4065214-4076918:1
so has part: feature:4065214-4076918:1:exon
subclass of: SO_0000010

534918
type: Gene
SIO_000068: ncbigene

position:4065214:1
position: 4065214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4076918:1
position: 4076918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065214-4076918:1:exon

SPRTN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
product: SprT-like N-terminal domain, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 ESTs, 5 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 252 samples with support for all annotated introns
transcript id: XM_024986709.1
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065214..4065359,4065430..4066366,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076917)
location: region:4065214-4076917:1
so has part: feature:4065214-4065359:1:exon
so has part: feature:4065430-4066366:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076917:1:exon

position:4076917:1
position: 4076917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065214-4065359:1:exon

position:4065359:1
position: 4065359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4065430-4066366:1:exon

position:4065430:1
position: 4065430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4066366:1
position: 4066366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4067053-4067152:1:exon

position:4067053:1
position: 4067053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4067152:1
position: 4067152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4071156-4071284:1:exon

position:4071156:1
position: 4071156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4071284:1
position: 4071284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4074581-4074848:1:exon

position:4074581:1
position: 4074581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4074848:1
position: 4074848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4076000-4076917:1:exon

position:4076000:1
position: 4076000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SPRTN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
product: SprT-like N-terminal domain, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 ESTs, 12 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
transcript id: XM_015460935.2
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065259..4065276,4065430..4065824,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076918)
location: region:4065259-4076918:1
so has part: feature:4065259-4065276:1:exon
so has part: feature:4065430-4065824:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076918:1:exon

position:4065259:1
position: 4065259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065259-4065276:1:exon

position:4065276:1
position: 4065276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4065430-4065824:1:exon

position:4065824:1
position: 4065824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4067053-4067152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4076000-4076918:1:exon

SPRTN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
product: SprT-like N-terminal domain
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001098082.1
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065261..4065359,4065430..4065824,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076916)
location: region:4065261-4076916:1
so has part: feature:4065261-4065359:1:exon
so has part: feature:4065430-4065824:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076916:1:exon

position:4065261:1
position: 4065261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4076916:1
position: 4076916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065261-4065359:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4065430-4065824:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4067053-4067152:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4076000-4076916:1:exon

SPRTN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
product: SprT-like N-terminal domain, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 ESTs, 14 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 337 samples with support for all annotated introns
transcript id: XM_015460934.2
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065271..4065824,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076917)
location: region:4065271-4076917:1
so has part: feature:4065271-4065824:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076917:1:exon

position:4065271:1
position: 4065271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065271-4065824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4067053-4067152:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4076000-4076917:1:exon

SPRTN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: sprT-like domain-containing protein Spartan
translation: MDEDLVLALQLQEEWNLQVSEREPAQEPLSLVDASWELVDPTPDLQGLFVLFNDRFFWGQLEAVEVKWSVRMTLCAGICSYEGRGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINRLTGANITVYHTFHDEVDEYRRHWWRCNGPCQNSKPYYGYVKRATNRAPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKTKLRKQPVSEAENKDKPNRGEKQLLIPFTGKGYVLGETSNFSSGKCITSHAINESQEPLSQDHSANALRPHSKTEVKFEQNGPSKKTSVASPVLSTSHQNVLSNYFSKVSVASSKAFRSVSGSPVKSLTVGDSTTKSVSAGSQRRVTSSRTSLRNSLKAMESTYVTVPQDAGGPEGKLPSKRPRIEDKTFFDLFFIKKEQAQSGGGDVTSSSHPPAAAQSPSGASGQSRVVHCPVCQDEVSETQINEHLDWCLERDSTQVKS
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065604..4065824,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076745)
location: region:4065604-4076745:1
so has part: feature:4065604-4065824:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076745:1:exon

NP_001091551.1
type: Protein
SIO_000068: ncbiprotein

position:4065604:1
position: 4065604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4076745:1
position: 4076745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4065604-4065824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4067053-4067152:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4076000-4076745:1:exon

SPRTN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sprT-like domain-containing protein Spartan isoform X1
translation: MDEDLVLALQLQEEWNLQVSEREPAQEPLSLVDASWELVDPTPDLQGLFVLFNDRFFWGQLEAVEVKWSVRMTLCAGICSYEGRGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINRLTGANITVYHTFHDEVDEYRRHWWRCNGPCQNSKPYYGYVKRATNRAPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKTKLRKQPVSEAENKDKPNRGEKQLLIPFTGKGYVLGETSNFSSGKCITSHAINESQEPLSQDHSANALRPHSKTEVKFEQNGPSKKTSVASPVLSTSHQNVLSNYFSKVSVASSKAFRSVSGSPVKSLTVGDSTTKSVSAGSQRRVTSSRTSLRNSLKAMESTYVTVPQDAGGPEGKLPSKRPRIEDKTFFDLFFIKKEQAQSGGGDVTSSSHPPAAAQSPSGASGQSRVVHCPVCQDEVSETQINEHLDWCLERDSTQVKS
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065604..4065824,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076745)
location: region:4065604-4076745:1
so has part: feature:4065604-4065824:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076745:1:exon

XP_015316420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4065604-4065824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4067053-4067152:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4076000-4076745:1:exon

SPRTN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sprT-like domain-containing protein Spartan isoform X1
translation: MDEDLVLALQLQEEWNLQVSEREPAQEPLSLVDASWELVDPTPDLQGLFVLFNDRFFWGQLEAVEVKWSVRMTLCAGICSYEGRGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINRLTGANITVYHTFHDEVDEYRRHWWRCNGPCQNSKPYYGYVKRATNRAPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKTKLRKQPVSEAENKDKPNRGEKQLLIPFTGKGYVLGETSNFSSGKCITSHAINESQEPLSQDHSANALRPHSKTEVKFEQNGPSKKTSVASPVLSTSHQNVLSNYFSKVSVASSKAFRSVSGSPVKSLTVGDSTTKSVSAGSQRRVTSSRTSLRNSLKAMESTYVTVPQDAGGPEGKLPSKRPRIEDKTFFDLFFIKKEQAQSGGGDVTSSSHPPAAAQSPSGASGQSRVVHCPVCQDEVSETQINEHLDWCLERDSTQVKS
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4065604..4065824,4067053..4067152,4071156..4071284,4074581..4074848,4076000..4076745)
location: region:4065604-4076745:1
so has part: feature:4065604-4065824:1:exon
so has part: feature:4067053-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076745:1:exon

XP_015316421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4065604-4065824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4067053-4067152:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4076000-4076745:1:exon

SPRTN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf124
alternative label: C28H1orf124
gene: SPRTN
gene synonym: C1orf124; C28H1orf124
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sprT-like domain-containing protein Spartan isoform X2
translation: MCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINRLTGANITVYHTFHDEVDEYRRHWWRCNGPCQNSKPYYGYVKRATNRAPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKTKLRKQPVSEAENKDKPNRGEKQLLIPFTGKGYVLGETSNFSSGKCITSHAINESQEPLSQDHSANALRPHSKTEVKFEQNGPSKKTSVASPVLSTSHQNVLSNYFSKVSVASSKAFRSVSGSPVKSLTVGDSTTKSVSAGSQRRVTSSRTSLRNSLKAMESTYVTVPQDAGGPEGKLPSKRPRIEDKTFFDLFFIKKEQAQSGGGDVTSSSHPPAAAQSPSGASGQSRVVHCPVCQDEVSETQINEHLDWCLERDSTQVKS
SIO_010081: SPRTN
subclass of: SO_0000673
so part of: SPRTN
location: join(4067090..4067152,4071156..4071284,4074581..4074848,4076000..4076745)
location: region:4067090-4076745:1
so has part: feature:4067090-4067152:1:exon
so has part: feature:4071156-4071284:1:exon
so has part: feature:4074581-4074848:1:exon
so has part: feature:4076000-4076745:1:exon

XP_024842477.1
type: Protein
SIO_000068: ncbiprotein

position:4067090:1
position: 4067090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4067090-4067152:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4071156-4071284:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4074581-4074848:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4076000-4076745:1:exon

EGLN1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: EGLN1
note: egl-9 family hypoxia inducible factor 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: complement(4087440..4150647)
location: region:4087440-4150647:-1
so has part: feature:4087440-4150647:-1:exon
subclass of: SO_0000010

534075
type: Gene
SIO_000068: ncbigene

position:4087440:-1
position: 4087440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4150647:-1
position: 4150647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4087440-4150647:-1:exon

EGLN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: EGLN1
product: egl-9 family hypoxia inducible factor 1
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001206046.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 non-frameshifting indel compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001206046.2
SIO_010081: EGLN1
subclass of: SO_0000673
so part of: EGLN1
location: complement(join(4087440..4089989,4091005..4091072,4093638..4093774,4099686..4099805,4149381..4150379))
location: region:4087440-4150379:-1
so has part: feature:4149381-4150379:-1:exon
so has part: feature:4099686-4099805:-1:exon
so has part: feature:4093638-4093774:-1:exon
so has part: feature:4091005-4091072:-1:exon
so has part: feature:4087440-4089989:-1:exon

position:4150379:-1
position: 4150379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4149381-4150379:-1:exon

position:4149381:-1
position: 4149381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4099686-4099805:-1:exon

position:4099686:-1
position: 4099686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4099805:-1
position: 4099805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4093638-4093774:-1:exon

position:4093638:-1
position: 4093638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4093774:-1
position: 4093774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4091005-4091072:-1:exon

position:4091005:-1
position: 4091005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4091072:-1
position: 4091072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4087440-4089989:-1:exon

position:4089989:-1
position: 4089989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

EGLN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: EGLN1
product: egl-9 family hypoxia inducible factor 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 124 ESTs, 23 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 246 samples with support for all annotated introns
transcript id: XM_024986696.1
SIO_010081: EGLN1
subclass of: SO_0000673
so part of: EGLN1
location: complement(join(4087447..4089989,4093638..4093774,4099686..4099805,4149381..4150647))
location: region:4087447-4150647:-1
so has part: feature:4149381-4150647:-1:exon
so has part: feature:4099686-4099805:-1:exon
so has part: feature:4093638-4093774:-1:exon
so has part: feature:4087447-4089989:-1:exon

position:4087447:-1
position: 4087447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4149381-4150647:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4099686-4099805:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4093638-4093774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4087447-4089989:-1:exon

EGLN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: EGLN1
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: egl nine homolog 1
translation: MANDSGGPGGPSPSERDRQYCELCGKMENLLRCSRCRSSFYCSKEHQRQDWKKHKLVCQVGENVPAPGTGEQQQPGPAPLPRATGAREARKAAPRRDRAVETAGPRAPGDAAKAKAKAKPTADPAAAASPPRAAPGGQGRVAAAAEAEPAKEDLLSRSLLNTPGDGLSHGGGLRPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMNNMDDLIRHCNGKLGNYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATRYAITVWYFDADERARAKVKYLTGEKGVRVELNKPSDSISKDVL
SIO_010081: EGLN1
subclass of: SO_0000673
so part of: EGLN1
location: complement(join(4089925..4089989,4091005..4091072,4093638..4093774,4099686..4099805,4149381..4150253))
location: region:4089925-4150253:-1
so has part: feature:4149381-4150253:-1:exon
so has part: feature:4099686-4099805:-1:exon
so has part: feature:4093638-4093774:-1:exon
so has part: feature:4091005-4091072:-1:exon
so has part: feature:4089925-4089989:-1:exon

NP_001192975.2
type: Protein
SIO_000068: ncbiprotein

position:4089925:-1
position: 4089925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4150253:-1
position: 4150253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4149381-4150253:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4099686-4099805:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4093638-4093774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4091005-4091072:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4089925-4089989:-1:exon

EGLN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: EGLN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: egl nine homolog 1 isoform X1
translation: MANDSGGPGGPSPSERDRQYCELCGKMENLLRCSRCRSSFYCSKEHQRQDWKKHKLVCQVGENVPAPGTGEQQQPGPAPLPRATGAREARKAAPRRDRAVETAGPRAPGDAAKAKAKAKPTADPAAAASPPRAAPGGQGRVAAAAEAEPAKEDLLSRSLLNTPGDGLSHGGGLRPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMNNMDDLIRHCNGKLGNYKINGRTKAMVACYPGNGTGYVRHVDNPNGDGRCVTCIYYLNKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFFWSDRRNPHEVQPAYATR
SIO_010081: EGLN1
subclass of: SO_0000673
so part of: EGLN1
location: complement(join(4089986..4089989,4093638..4093774,4099686..4099805,4149381..4150253))
location: region:4089986-4150253:-1
so has part: feature:4149381-4150253:-1:exon
so has part: feature:4099686-4099805:-1:exon
so has part: feature:4093638-4093774:-1:exon
so has part: feature:4089986-4089989:-1:exon

XP_024842464.1
type: Protein
SIO_000068: ncbiprotein

position:4089986:-1
position: 4089986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4149381-4150253:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4099686-4099805:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4093638-4093774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4089986-4089989:-1:exon

LOC784492
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC784492
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4236119..4237348
location: region:4236119-4237348:1
so has part: feature:4236119-4237348:1:exon

784492
type: Gene
SIO_000068: ncbigene

position:4236119:1
position: 4236119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4237348:1
position: 4237348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4236119-4237348:1:exon

LOC533307
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC533307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4262723..4264963)
location: region:4262723-4264963:-1
so has part: feature:4262723-4264963:-1:exon
subclass of: SO_0000010

533307
type: Gene
SIO_000068: ncbigene

position:4262723:-1
position: 4262723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4264963:-1
position: 4264963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4262723-4264963:-1:exon

LOC533307
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: LOC533307
product: tubulin beta-7 chain
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 173 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_002698780.5
SIO_010081: LOC533307
subclass of: SO_0000673
so part of: LOC533307
location: complement(4262723..4264963)
location: region:4262723-4264963:-1
so has part: feature:4262723-4264963:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4262723-4264963:-1:exon

LOC533307
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: LOC533307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin beta-7 chain
translation: MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVHSGPFGQIFRSDNIVFGQSGADNNWAKGHYREGAELVDSVLDVVRKEAKSCDCLQGFQLTHSLGGGTDSGMGTLLISKIREEYPDHIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYAICFRTLKLTTPTYGDLNQLVSATMSGVTTCLRFPGQLNADLHKLAVNMVPFPHLHFFVPGFAPLTSCGSQQYWALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGQMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFMAMFRRKAFLHWYTGEGMDETEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
SIO_010081: LOC533307
subclass of: SO_0000673
so part of: LOC533307
location: complement(4263481..4264815)
location: region:4263481-4264815:-1
so has part: feature:4263481-4264815:-1:exon

XP_002698826.1
type: Protein
SIO_000068: ncbiprotein

position:4263481:-1
position: 4263481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4264815:-1
position: 4264815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4263481-4264815:-1:exon

TSNAX
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TSNAX
note: translin associated factor X; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 4336893..4373968
location: region:4336893-4373968:1
so has part: feature:4336893-4373968:1:exon
subclass of: SO_0000010

533927
type: Gene
SIO_000068: ncbigene

position:4336893:1
position: 4336893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4373968:1
position: 4373968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4336893-4373968:1:exon

TSNAX
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: TSNAX
product: translin associated factor X, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 118 samples with support for all annotated introns
transcript id: XR_001495323.2
SIO_010081: TSNAX
so part of: TSNAX
location: join(4336893..4337050,4337489..4337593,4340698..4340812,4347201..4347331,4368395..4368522,4371074..4371238,4372134..4372270)
location: region:4336893-4372270:1
so has part: feature:4336893-4337050:1:exon
so has part: feature:4337489-4337593:1:exon
so has part: feature:4340698-4340812:1:exon
so has part: feature:4347201-4347331:1:exon
so has part: feature:4368395-4368522:1:exon
so has part: feature:4371074-4371238:1:exon
so has part: feature:4372134-4372270:1:exon

position:4372270:1
position: 4372270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4336893-4337050:1:exon

position:4337050:1
position: 4337050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4337489-4337593:1:exon

position:4337489:1
position: 4337489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4337593:1
position: 4337593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4340698-4340812:1:exon

position:4340698:1
position: 4340698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4340812:1
position: 4340812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4347201-4347331:1:exon

position:4347201:1
position: 4347201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4347331:1
position: 4347331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4368395-4368522:1:exon

position:4368395:1
position: 4368395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4368522:1
position: 4368522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4371074-4371238:1:exon

position:4371074:1
position: 4371074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4371238:1
position: 4371238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4372134-4372270:1:exon

position:4372134:1
position: 4372134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TSNAX
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TSNAX
product: translin associated factor X, transcript variant 1
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001076006.3
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001076006.3
SIO_010081: TSNAX
subclass of: SO_0000673
so part of: TSNAX
location: join(4336914..4337050,4337489..4337593,4340698..4340812,4347201..4347331,4368395..4368522,4372134..4373968)
location: region:4336914-4373968:1
so has part: feature:4336914-4337050:1:exon
so has part: feature:4337489-4337593:1:exon
so has part: feature:4340698-4340812:1:exon
so has part: feature:4347201-4347331:1:exon
so has part: feature:4368395-4368522:1:exon
so has part: feature:4372134-4373968:1:exon

position:4336914:1
position: 4336914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4336914-4337050:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4337489-4337593:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4340698-4340812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4347201-4347331:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4368395-4368522:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4372134-4373968:1:exon

TSNAX
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TSNAX
product: translin associated factor X, transcript variant 2
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001314062.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001314062.1
SIO_010081: TSNAX
subclass of: SO_0000673
so part of: TSNAX
location: join(4336914..4337050,4337489..4337593,4340698..4340812,4347201..4347331,4372134..4373968)
location: region:4336914-4373968:1
so has part: feature:4336914-4337050:1:exon
so has part: feature:4337489-4337593:1:exon
so has part: feature:4340698-4340812:1:exon
so has part: feature:4347201-4347331:1:exon
so has part: feature:4372134-4373968:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4336914-4337050:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4337489-4337593:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4340698-4340812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4347201-4347331:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4372134-4373968:1:exon

TSNAX
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TSNAX
note: isoform 1 is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: translin-associated protein X isoform 1
translation: MSSKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESEVKLDGVRQKILQVAQELSVEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFSTEDNGKENKTPSSDAQDKQCGTWRLRITPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSEIPKHMLADVFSVKTEMIDQEEGIS
SIO_010081: TSNAX
subclass of: SO_0000673
so part of: TSNAX
location: join(4337035..4337050,4337489..4337593,4340698..4340812,4347201..4347331,4368395..4368522,4372134..4372511)
location: region:4337035-4372511:1
so has part: feature:4337035-4337050:1:exon
so has part: feature:4337489-4337593:1:exon
so has part: feature:4340698-4340812:1:exon
so has part: feature:4347201-4347331:1:exon
so has part: feature:4368395-4368522:1:exon
so has part: feature:4372134-4372511:1:exon

NP_001069474.2
type: Protein
SIO_000068: ncbiprotein

position:4337035:1
position: 4337035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4372511:1
position: 4372511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4337035-4337050:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4337489-4337593:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4340698-4340812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4347201-4347331:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4368395-4368522:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4372134-4372511:1:exon

TSNAX
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TSNAX
note: isoform 2 is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: translin-associated protein X isoform 2
translation: MSSKEGSGGFRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESEVKLDGVRQKILQVAQELSVEDMHQFHRAITTAFL
SIO_010081: TSNAX
subclass of: SO_0000673
so part of: TSNAX
location: join(4337035..4337050,4337489..4337593,4340698..4340812,4347201..4347331,4372134..4372144)
location: region:4337035-4372144:1
so has part: feature:4337035-4337050:1:exon
so has part: feature:4337489-4337593:1:exon
so has part: feature:4340698-4340812:1:exon
so has part: feature:4347201-4347331:1:exon
so has part: feature:4372134-4372144:1:exon

NP_001300991.1
type: Protein
SIO_000068: ncbiprotein

position:4372144:1
position: 4372144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4337035-4337050:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4337489-4337593:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4340698-4340812:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4347201-4347331:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4372134-4372144:1:exon

LOC112444805
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444805
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4439397..4439470)
location: region:4439397-4439470:-1
so has part: feature:4439397-4439470:-1:exon
subclass of: SO_0000578

112444805
type: Gene
SIO_000068: ncbigene

position:4439397:-1
position: 4439397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4439470:-1
position: 4439470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4439397-4439470:-1:exon

LOC112444805
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: snoRNA
gene: LOC112444805
product: small nucleolar RNA SNORD65
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00571
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003033173.1
SIO_010081: LOC112444805
subclass of: SO_0000673
so part of: LOC112444805
location: complement(4439397..4439470)
location: region:4439397-4439470:-1
so has part: feature:4439397-4439470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4439397-4439470:-1:exon

DISC1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: DISC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4454550..4882112
location: region:4454550-4882112:1
so has part: feature:4454550-4882112:1:exon
subclass of: SO_0000010

613555
type: Gene
SIO_000068: ncbigene

position:4454550:1
position: 4454550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4882112:1
position: 4882112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454550-4882112:1:exon

DISC1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: DISC1
product: DISC1 scaffold protein, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003033146.1
SIO_010081: DISC1
so part of: DISC1
location: join(4454550..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4614456..4614585,4618322..4618548,4665745..4665933,4781608..4782035,4790855..4790915,4846624..4846699)
location: region:4454550-4846699:1
so has part: feature:4454550-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4614456-4614585:1:exon
so has part: feature:4618322-4618548:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4781608-4782035:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846699:1:exon

position:4846699:1
position: 4846699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454550-4454964:1:exon

position:4454964:1
position: 4454964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

position:4538919:1
position: 4538919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4539895:1
position: 4539895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

position:4552104:1
position: 4552104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4552173:1
position: 4552173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

position:4599586:1
position: 4599586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4599733:1
position: 4599733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4614456-4614585:1:exon

position:4614456:1
position: 4614456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4614585:1
position: 4614585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4618322-4618548:1:exon

position:4618322:1
position: 4618322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4618548:1
position: 4618548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4665745-4665933:1:exon

position:4665745:1
position: 4665745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4665933:1
position: 4665933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4781608-4782035:1:exon

position:4781608:1
position: 4781608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4782035:1
position: 4782035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4790855-4790915:1:exon

position:4790855:1
position: 4790855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4790915:1
position: 4790915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4846624-4846699:1:exon

position:4846624:1
position: 4846624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DISC1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: DISC1
product: DISC1 scaffold protein, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_003033147.1
SIO_010081: DISC1
so part of: DISC1
location: join(4454554..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4614456..4614585,4618322..4618548,4665745..4665933,4790855..4790915,4846624..4846685)
location: region:4454554-4846685:1
so has part: feature:4454554-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4614456-4614585:1:exon
so has part: feature:4618322-4618548:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846685:1:exon

position:4454554:1
position: 4454554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4846685:1
position: 4846685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454554-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4614456-4614585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4618322-4618548:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4790855-4790915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4846624-4846685:1:exon

DISC1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: DISC1
product: DISC1 scaffold protein, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_003033145.1
SIO_010081: DISC1
so part of: DISC1
location: join(4454574..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4614456..4614585,4618322..4618548,4649280..4649334,4653604..4653706,4665745..4665933,4781608..4782035,4790855..4790915)
location: region:4454574-4790915:1
so has part: feature:4454574-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4614456-4614585:1:exon
so has part: feature:4618322-4618548:1:exon
so has part: feature:4649280-4649334:1:exon
so has part: feature:4653604-4653706:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4781608-4782035:1:exon
so has part: feature:4790855-4790915:1:exon

position:4454574:1
position: 4454574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454574-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4614456-4614585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4618322-4618548:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4649280-4649334:1:exon

position:4649280:1
position: 4649280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4649334:1
position: 4649334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4653604-4653706:1:exon

position:4653604:1
position: 4653604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4653706:1
position: 4653706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4781608-4782035:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4790855-4790915:1:exon

DISC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: DISC1
product: DISC1 scaffold protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_024986937.1
SIO_010081: DISC1
subclass of: SO_0000673
so part of: DISC1
location: join(4454577..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4649280..4649334,4653604..4653706,4665745..4665933,4790855..4790915,4846624..4846897,4867787..4867904,4876281..4876438,4879715..4882112)
location: region:4454577-4882112:1
so has part: feature:4454577-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4649280-4649334:1:exon
so has part: feature:4653604-4653706:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846897:1:exon
so has part: feature:4867787-4867904:1:exon
so has part: feature:4876281-4876438:1:exon
so has part: feature:4879715-4882112:1:exon

position:4454577:1
position: 4454577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454577-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4649280-4649334:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4653604-4653706:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4790855-4790915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4846624-4846897:1:exon

position:4846897:1
position: 4846897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4867787-4867904:1:exon

position:4867787:1
position: 4867787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4867904:1
position: 4867904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4876281-4876438:1:exon

position:4876281:1
position: 4876281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4876438:1
position: 4876438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4879715-4882112:1:exon

position:4879715:1
position: 4879715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DISC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: DISC1
product: DISC1 scaffold protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 long SRA read, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_024986936.1
SIO_010081: DISC1
subclass of: SO_0000673
so part of: DISC1
location: join(4454611..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4614456..4614585,4618322..4618548,4649280..4649334,4653604..4653706,4665745..4665933,4790855..4790915,4846624..4846897,4867787..4867904,4876281..4876438,4879715..4882112)
location: region:4454611-4882112:1
so has part: feature:4454611-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4614456-4614585:1:exon
so has part: feature:4618322-4618548:1:exon
so has part: feature:4649280-4649334:1:exon
so has part: feature:4653604-4653706:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846897:1:exon
so has part: feature:4867787-4867904:1:exon
so has part: feature:4876281-4876438:1:exon
so has part: feature:4879715-4882112:1:exon

position:4454611:1
position: 4454611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454611-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4614456-4614585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4618322-4618548:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4649280-4649334:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4653604-4653706:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4790855-4790915:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4846624-4846897:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4867787-4867904:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4876281-4876438:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4879715-4882112:1:exon

DISC1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: DISC1
product: DISC1 scaffold protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_003033144.1
SIO_010081: DISC1
so part of: DISC1
location: join(4454611..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4614456..4614585,4618322..4618548,4649280..4649334,4653604..4653706,4665745..4665933,4790855..4790915,4846624..4846897,4867787..4867904,4876281..4876438,4879715..4881123,4881224..4882112)
location: region:4454611-4882112:1
so has part: feature:4454611-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4614456-4614585:1:exon
so has part: feature:4618322-4618548:1:exon
so has part: feature:4649280-4649334:1:exon
so has part: feature:4653604-4653706:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846897:1:exon
so has part: feature:4867787-4867904:1:exon
so has part: feature:4876281-4876438:1:exon
so has part: feature:4879715-4881123:1:exon
so has part: feature:4881224-4882112:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4454611-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4614456-4614585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4618322-4618548:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4649280-4649334:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4653604-4653706:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4790855-4790915:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4846624-4846897:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4867787-4867904:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4876281-4876438:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4879715-4881123:1:exon

position:4881123:1
position: 4881123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4881224-4882112:1:exon

position:4881224:1
position: 4881224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DISC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: DISC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: disrupted in schizophrenia 1 protein isoform X1
translation: MLGGGPQGAPAGGGRGHRAGSQDCSPPAASFRRRRLARRPGYMRSAAGPRIGFLSPPVGAPFRAQGGACGKESHHLESRAGPCGLDPGGQWRGRSVGSLIPRSTATSALTVGHRGPALTAAKGSPGLLGSQPRAGTALPNRLSRLCGPRATGCRGELPSTDTREAPSPCREAWNKGCPSPEDMSDTSCSLGSGPQAPAIPASSQDVFTSSFSFIRLSLGSAGERGEAEGCPPSREAEGPHQSLEEMEAKAASSGGPHDHPRLLSLPFTLKASQGLADATQTSGGSRGLECQTLPLLDTDAASSCSLDPLWFEASSSADAQRWDPLLSRCEPALLHCLQGQRRRLEVKSLRLKLQKLQDKAIEEDDYDKAEMIQQRLEALEKERSSLHFQLPSQQPALSALLGHLGAQAQASLRWAAQRAGGDDPQARLRMDPKTLEAAAQDSLRVSITRRDWLLREKQQLQKEIETLQARMSVLEAKDQQLRREIEEQERLLPWQGCDLVGGLSLGELQEVTKTLQDTLALAEQIPLHAEPPETIRSLQERIKSLSLSLKEITAKVCMSERLCSALRKKVNDIETQLPALFEAKMLAISGNHFYTAKELTEEIRSLTLEREALEGLLHKLLVLSSRNVQKLGSVKEDYSRLRQELDQGRAAYETSVKVNTMKYMEMLEEKLHSCKCPLLGKVWEADLEACRLLIQSLQLQEARGSLFADERQTDDLGGGTYTMALATPLRSHLEDGRKNPLQAFEEWTVHLTPSPHCASSEQKEESYIFSAELGEKCETIGKKLLYLEDQLHVAIHSHDEDLIQSLKGELQMVKETLQAMALQLQPAKEAGEREAAASCVTAGIREAQS
SIO_010081: DISC1
subclass of: SO_0000673
so part of: DISC1
location: join(4454907..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4614456..4614585,4618322..4618548,4649280..4649334,4653604..4653706,4665745..4665933,4790855..4790915,4846624..4846897,4867787..4867904,4876281..4876420)
location: region:4454907-4876420:1
so has part: feature:4454907-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4614456-4614585:1:exon
so has part: feature:4618322-4618548:1:exon
so has part: feature:4649280-4649334:1:exon
so has part: feature:4653604-4653706:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846897:1:exon
so has part: feature:4867787-4867904:1:exon
so has part: feature:4876281-4876420:1:exon

XP_024842704.1
type: Protein
SIO_000068: ncbiprotein

position:4454907:1
position: 4454907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4876420:1
position: 4876420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4454907-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4614456-4614585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4618322-4618548:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4649280-4649334:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4653604-4653706:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4790855-4790915:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4846624-4846897:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4867787-4867904:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4876281-4876420:1:exon

DISC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: DISC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: disrupted in schizophrenia 1 protein isoform X2
translation: MLGGGPQGAPAGGGRGHRAGSQDCSPPAASFRRRRLARRPGYMRSAAGPRIGFLSPPVGAPFRAQGGACGKESHHLESRAGPCGLDPGGQWRGRSVGSLIPRSTATSALTVGHRGPALTAAKGSPGLLGSQPRAGTALPNRLSRLCGPRATGCRGELPSTDTREAPSPCREAWNKGCPSPEDMSDTSCSLGSGPQAPAIPASSQDVFTSSFSFIRLSLGSAGERGEAEGCPPSREAEGPHQSLEEMEAKAASSGGPHDHPRLLSLPFTLKASQGLADATQTSGGSRGLECQTLPLLDTDAASSCSLDPLWFEASSSADAQRWDPLLSRCEPALLHCLQGQRRRLEVKSLRLKLQKLQDKAIEEDDYDKAEMIQQRLEALEKERSSLHFQLPSQQPALSALLGHLGAQAQASLRWAAQSLQERIKSLSLSLKEITAKVCMSERLCSALRKKVNDIETQLPALFEAKMLAISGNHFYTAKELTEEIRSLTLEREALEGLLHKLLVLSSRNVQKLGSVKEDYSRLRQELDQGRAAYETSVKVNTMKYMEMLEEKLHSCKCPLLGKVWEADLEACRLLIQSLQLQEARGSLFADERQTDDLGGGTYTMALATPLRSHLEDGRKNPLQAFEEWTVHLTPSPHCASSEQKEESYIFSAELGEKCETIGKKLLYLEDQLHVAIHSHDEDLIQSLKGELQMVKETLQAMALQLQPAKEAGEREAAASCVTAGIREAQS
SIO_010081: DISC1
subclass of: SO_0000673
so part of: DISC1
location: join(4454907..4454964,4538919..4539895,4552104..4552173,4599586..4599733,4649280..4649334,4653604..4653706,4665745..4665933,4790855..4790915,4846624..4846897,4867787..4867904,4876281..4876420)
location: region:4454907-4876420:1
so has part: feature:4454907-4454964:1:exon
so has part: feature:4538919-4539895:1:exon
so has part: feature:4552104-4552173:1:exon
so has part: feature:4599586-4599733:1:exon
so has part: feature:4649280-4649334:1:exon
so has part: feature:4653604-4653706:1:exon
so has part: feature:4665745-4665933:1:exon
so has part: feature:4790855-4790915:1:exon
so has part: feature:4846624-4846897:1:exon
so has part: feature:4867787-4867904:1:exon
so has part: feature:4876281-4876420:1:exon

XP_024842705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4454907-4454964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4538919-4539895:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4552104-4552173:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4599586-4599733:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4649280-4649334:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4653604-4653706:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4665745-4665933:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4790855-4790915:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4846624-4846897:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4867787-4867904:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4876281-4876420:1:exon

LOC112444801
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444801
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 4814531..4814652
location: region:4814531-4814652:1
so has part: feature:4814531-4814652:1:exon
subclass of: SO_0000578

112444801
type: Gene
SIO_000068: ncbigene

position:4814531:1
position: 4814531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4814652:1
position: 4814652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4814531-4814652:1:exon

LOC112444801
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: snoRNA
gene: LOC112444801
product: small nucleolar RNA SNORA25
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00402
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003033169.1
SIO_010081: LOC112444801
subclass of: SO_0000673
so part of: LOC112444801
location: 4814531..4814652
location: region:4814531-4814652:1
so has part: feature:4814531-4814652:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4814531-4814652:1:exon

TRNAG-GCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRNAG-GCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(5134245..5134316)
location: region:5134245-5134316:-1
so has part: feature:5134245-5134316:-1:exon
subclass of: SO_0000663

112444822
type: Gene
SIO_000068: ncbigene

position:5134245:-1
position: 5134245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5134316:-1
position: 5134316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5134245-5134316:-1:exon

TRNAG-GCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9913
gene: TRNAG-GCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glycine (anticodon GCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(5134281..5134283),aa:Gly, seq:gcc)
SIO_010081: TRNAG-GCC
subclass of: SO_0000673
so part of: TRNAG-GCC
location: complement(5134245..5134316)
location: region:5134245-5134316:-1
so has part: feature:5134245-5134316:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5134245-5134316:-1:exon

SIPA1L2
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: SIPA1L2
note: signal induced proliferation associated 1 like 2; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: complement(5218866..5466018)
location: region:5218866-5466018:-1
so has part: feature:5218866-5466018:-1:exon
subclass of: SO_0000010

535132
type: Gene
SIO_000068: ncbigene

position:5218866:-1
position: 5218866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5466018:-1
position: 5466018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5218866-5466018:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 7 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_024986710.1
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5218866..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336849,5399777..5399822,5465798..5466018))
location: region:5218866-5466018:-1
so has part: feature:5465798-5466018:-1:exon
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SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 8 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_010820432.3
SIO_010081: SIPA1L2
subclass of: SO_0000673
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location: region:5218866-5465448:-1
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SIO_000300: 1
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SIO_000300: 23
SIO_000628: feature:5218866-5220120:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 7 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_024986711.1
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
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location: region:5218866-5463504:-1
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position:5463504:-1
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urn:…
SIO_000300: 1
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urn:…
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urn:…
SIO_000300: 22
SIO_000628: feature:5218866-5220120:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 7 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_005226228.4
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5218866..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265878,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336849,5399777..5399822,5463242..5463504))
location: region:5218866-5463504:-1
so has part: feature:5463242-5463504:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 12
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position:5265878:-1
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reference: sequence
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urn:…
SIO_000300: 13
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urn:…
SIO_000300: 23
SIO_000628: feature:5218866-5220120:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 8 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_005226227.4
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5218866..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336849,5399777..5399822,5463242..5463504))
location: region:5218866-5463504:-1
so has part: feature:5463242-5463504:-1:exon
so has part: feature:5399777-5399822:-1:exon
so has part: feature:5335134-5336849:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
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so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
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so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5218866-5220120:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5463242-5463504:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5399777-5399822:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5335134-5336849:-1:exon

urn:…
SIO_000300: 4
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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 6
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5218866-5220120:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 ESTs, 15 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_010820433.3
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5218866..5220120,5223333..5223414,5224557..5224680,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336849,5399777..5399822,5463242..5463503))
location: region:5218866-5463503:-1
so has part: feature:5463242-5463503:-1:exon
so has part: feature:5399777-5399822:-1:exon
so has part: feature:5335134-5336849:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
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so has part: feature:5263582-5263685:-1:exon
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so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5218866-5220120:-1:exon

position:5463503:-1
position: 5463503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5463242-5463503:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5399777-5399822:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5335134-5336849:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 9
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urn:…
SIO_000300: 10
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urn:…
SIO_000300: 11
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urn:…
SIO_000300: 12
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 13
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urn:…
SIO_000300: 14
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5218866-5220120:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 27 ESTs, 7 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_010820431.3
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5218866..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336849,5399777..5399822,5419532..5420084))
location: region:5218866-5420084:-1
so has part: feature:5419532-5420084:-1:exon
so has part: feature:5399777-5399822:-1:exon
so has part: feature:5335134-5336849:-1:exon
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so has part: feature:5223333-5223414:-1:exon
so has part: feature:5218866-5220120:-1:exon

position:5420084:-1
position: 5420084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5419532-5420084:-1:exon

position:5419532:-1
position: 5419532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5399777-5399822:-1:exon

urn:…
SIO_000300: 3
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urn:…
SIO_000300: 4
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 7
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urn:…
SIO_000300: 8
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5218866-5220120:-1:exon

SIPA1L2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SIPA1L2
product: signal induced proliferation associated 1 like 2
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001206220.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 10 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001206220.2
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5218869..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5218869-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
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so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5218869-5220120:-1:exon

position:5218869:-1
position: 5218869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5336610:-1
position: 5336610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5218869-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X2
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265878,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265878:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_005226285.2
type: Protein
SIO_000068: ncbiprotein

position:5219974:-1
position: 5219974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265878:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X3
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_010818735.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
inference: similar to AA sequence (same species):RefSeq:NP_001193149.2
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 2 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDSKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEILSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

NP_001193149.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X1
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_005226284.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X1
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_010818733.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X1
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_024842478.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X1
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_010818734.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

SIPA1L2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SIPA1L2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: signal-induced proliferation-associated 1-like protein 2 isoform X1
translation: MSDPRQSQEEKHKLGRACSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLTASSSNESGGPANGTPAVPKMGVRARVSEWPPKKDCSKELTCKTLWESRSQTSYESVTSIIHNGQNDGSEGQQEEPLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFAMLRGYRLENYDHKAMAPFGFPEFFPCDPAISPSLHAAAQISRGEFVRISGLDYMDSALLLGRDRDKPFKRRLKSESVETSLFRKLRAVKSEHETFKFACELEDGRLERGVRPWNCQRCFAHYDVQSILFNINEAMATRANVGKRKNITTGASAASQTQMPAGPPGSCDSPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYVIEHIDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSVRREKVEDPKEKEGSQFNYRVVFRTSELTTLRGAILEDAIPSTARHGTARGLPLKEVLEYVIPELSIQCLRQASSSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVCTMLPHTPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKEKVKPRKDAHLFSVGAIMWHVVARDFGQSADIECLLGVSNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLMSIKVFYERGECILLSSVDSCAEDVREIVQRLGIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSEGAPCEYKTPFRRNTTWHRVPTPALQPLPRVSPVPGTPDRLQCQPLLPQSQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGSSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTVEGSRHAETKWHGPPSKVLSSYKERGLQKDGGCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTAPCMPAAVLGPVHLAGSRSLVHGRAEQWADSDIPGPDDEQAKMYAVHGYAPGISTSGAADGSLGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDTSKVYIVSHGSGQQAPGSMSKAYHRQAAVNKYIIGWKKSEDSPPPEEPEVAECQGLYSEMDLLSSAAQQQAVVGDAVSETQHVLSKEDFLKLMLPDSPSVEEGRRKFSFYGNLSPRRSLYRTLSDESICSHRRGSSFGSSRSSILDQALPNDILFSTTPPYHSTLPPRTQPVPSVGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVASFCTLTDMHPEQDLEGAQELPLCVDPGSGKDFMDPAGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNLRLQEESQTAAAQLRKFTEWFFNTIDKKP
SIO_010081: SIPA1L2
subclass of: SO_0000673
so part of: SIPA1L2
location: complement(join(5219974..5220120,5223333..5223414,5224557..5224680,5225203..5225256,5237583..5237714,5245508..5245727,5247926..5248079,5253103..5253327,5261527..5261912,5263582..5263685,5264042..5264142,5265798..5265881,5267942..5268199,5282717..5282991,5286960..5287536,5290841..5290998,5301385..5301488,5306379..5306553,5314255..5314443,5316192..5316325,5335134..5336610))
location: region:5219974-5336610:-1
so has part: feature:5335134-5336610:-1:exon
so has part: feature:5316192-5316325:-1:exon
so has part: feature:5314255-5314443:-1:exon
so has part: feature:5306379-5306553:-1:exon
so has part: feature:5301385-5301488:-1:exon
so has part: feature:5290841-5290998:-1:exon
so has part: feature:5286960-5287536:-1:exon
so has part: feature:5282717-5282991:-1:exon
so has part: feature:5267942-5268199:-1:exon
so has part: feature:5265798-5265881:-1:exon
so has part: feature:5264042-5264142:-1:exon
so has part: feature:5263582-5263685:-1:exon
so has part: feature:5261527-5261912:-1:exon
so has part: feature:5253103-5253327:-1:exon
so has part: feature:5247926-5248079:-1:exon
so has part: feature:5245508-5245727:-1:exon
so has part: feature:5237583-5237714:-1:exon
so has part: feature:5225203-5225256:-1:exon
so has part: feature:5224557-5224680:-1:exon
so has part: feature:5223333-5223414:-1:exon
so has part: feature:5219974-5220120:-1:exon

XP_024842479.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5335134-5336610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5316192-5316325:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5314255-5314443:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5306379-5306553:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5301385-5301488:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5290841-5290998:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5286960-5287536:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5282717-5282991:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5267942-5268199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5265798-5265881:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5264042-5264142:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5263582-5263685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5261527-5261912:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5253103-5253327:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5247926-5248079:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5245508-5245727:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5237583-5237714:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5225203-5225256:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5224557-5224680:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5223333-5223414:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5219974-5220120:-1:exon

TRNAG-UCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRNAG-UCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5385866..5385938
location: region:5385866-5385938:1
so has part: feature:5385866-5385938:1:exon
subclass of: SO_0000663

112444810
type: Gene
SIO_000068: ncbigene

position:5385866:1
position: 5385866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5385938:1
position: 5385938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5385866-5385938:1:exon

TRNAG-UCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9913
gene: TRNAG-UCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glycine (anticodon UCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5385899..5385901,aa:Gly,seq:tcc)
SIO_010081: TRNAG-UCC
subclass of: SO_0000673
so part of: TRNAG-UCC
location: 5385866..5385938
location: region:5385866-5385938:1
so has part: feature:5385866-5385938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5385866-5385938:1:exon

LOC112444724
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444724
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5464018..5465618
location: region:5464018-5465618:1
so has part: feature:5464018-5465618:1:exon

112444724
type: Gene
SIO_000068: ncbigene

position:5464018:1
position: 5464018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5465618:1
position: 5465618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5464018-5465618:1:exon

LOC112444724
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC112444724
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 45% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC112444724
subclass of: SO_0000673
so part of: LOC112444724
location: 5464018..5464871
location: region:5464018-5464871:1
so has part: feature:5464018-5464871:1:exon

position:5464871:1
position: 5464871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5464018-5464871:1:exon

LOC112444724
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC112444724
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 45% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC112444724
subclass of: SO_0000673
so part of: LOC112444724
location: 5464982..5465618
location: region:5464982-5465618:1
so has part: feature:5464982-5465618:1:exon

position:5464982:1
position: 5464982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5464982-5465618:1:exon

LOC112444796
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444796
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 5556570..5556671
location: region:5556570-5556671:1
so has part: feature:5556570-5556671:1:exon
subclass of: SO_0000623

112444796
type: Gene
SIO_000068: ncbigene

position:5556570:1
position: 5556570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5556671:1
position: 5556671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5556570-5556671:1:exon

LOC112444796
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: snRNA
gene: LOC112444796
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003033164.1
SIO_010081: LOC112444796
subclass of: SO_0000673
so part of: LOC112444796
location: 5556570..5556671
location: region:5556570-5556671:1
so has part: feature:5556570-5556671:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5556570-5556671:1:exon

MAP10
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: MAP10
note: microtubule associated protein 10; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 5675771..5678560
location: region:5675771-5678560:1
so has part: feature:5675771-5678560:1:exon
subclass of: SO_0000010

781199
type: Gene
SIO_000068: ncbigene

position:5675771:1
position: 5675771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5678560:1
position: 5678560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5675771-5678560:1:exon

MAP10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: MAP10
product: microtubule associated protein 10
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001098148.1
SIO_010081: MAP10
subclass of: SO_0000673
so part of: MAP10
location: 5675771..5678560
location: region:5675771-5678560:1
so has part: feature:5675771-5678560:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5675771-5678560:1:exon

MAP10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: MAP10
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: microtubule-associated protein 10
translation: MASAVSERLFSLELLVDWVCLEAGLPQPPVVAEEEQKEEGEGASPPRPSRSLCPAVAFRLLDFPTLLIYPPAGPAAPAQESRPGLVSFRRGKSCLFRLQPATLHRLLLRTPLYTLLLQLPPGHPTPAPQLLGACSISLAAAVHKVLGFAAPGSSQSHRGSFPLCNRDGERIGDIALGYRLSDLGSSLLGHLERPVASPGGGVEGMEVQKSVEVSPQTWQENQQLQQPDSEPSPGDADKPLVDVKISRAGKDLKGRAFHSKADSDYTDSMENGKTNSDMCSKGSSERSVSPPNQEGTEVELETNIICPPPLYYTHLTQEKTPPKQGKITIEPQINASEEWDDGTFLKENVNPPTHTNPPEHTNSATGESCSVLINPASVQDTGASNQTTDHPPTEQNRINTIRQLPLLNALLVELSLLYNQPMANPTHIHPHLAWLYRTEDKKSPESSVKSTCKSESKKDKLSVGENEKSVSLQYKKNQTENLKKGKYFEKKGGAPQKRVSRGKLLYGLTNTLKLRLKQTNPDMLVEYEKKEQYKKMQTQMLGAKLRIPSSKVKILSFAELYQKPHELPKDKCLESDASFAENSNTSKQISVVVDDPSTTTETKLNCATEKTVDCDENRSNNGFLGEILSPANSVVSERFICTNTLEGKVFGRKSIQSPGVFQQVAVVDRTVVDKEIDDKQVKITGDDILTVDINEKNPSTSSCSESISELKYSDDFTSPCSSEDTSRILRACDSSPGTENPKNSQHTSTSSETRLSIRKNSSAKSSILSPPFSAGSPVLSHKRFPVSKTQDKSLEEASSSDFSSSQWTEEKENQRDQNSMHNSKVIKQDHDISAKPKTRTGCKSSEKSQSPRTSQVSSYLPSNLSELELNVLDCSTLDHFEEDCDDLGSLNISKQCKDICELVINKLPGYTV
SIO_010081: MAP10
subclass of: SO_0000673
so part of: MAP10
location: 5675783..5678521
location: region:5675783-5678521:1
so has part: feature:5675783-5678521:1:exon

NP_001091617.1
type: Protein
SIO_000068: ncbiprotein

position:5675783:1
position: 5675783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5678521:1
position: 5678521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5675783-5678521:1:exon

NTPCR
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
alternative label: C1orf57
alternative label: C28H1orf57
gene: NTPCR
gene synonym: C1orf57; C28H1orf57
note: nucleoside-triphosphatase, cancer-related; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 5833249..5871530
location: region:5833249-5871530:1
so has part: feature:5833249-5871530:1:exon
subclass of: SO_0000010

521103
type: Gene
SIO_000068: ncbigene

position:5833249:1
position: 5833249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5871530:1
position: 5871530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5833249-5871530:1:exon

NTPCR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf57
alternative label: C28H1orf57
gene: NTPCR
gene synonym: C1orf57; C28H1orf57
product: nucleoside-triphosphatase, cancer-related
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001075816.2
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001075816.2
SIO_010081: NTPCR
subclass of: SO_0000673
so part of: NTPCR
location: join(5833249..5833405,5839014..5839176,5839790..5839886,5860745..5860954,5870885..5871530)
location: region:5833249-5871530:1
so has part: feature:5833249-5833405:1:exon
so has part: feature:5839014-5839176:1:exon
so has part: feature:5839790-5839886:1:exon
so has part: feature:5860745-5860954:1:exon
so has part: feature:5870885-5871530:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5833249-5833405:1:exon

position:5833405:1
position: 5833405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5839014-5839176:1:exon

position:5839014:1
position: 5839014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5839176:1
position: 5839176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5839790-5839886:1:exon

position:5839790:1
position: 5839790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5839886:1
position: 5839886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5860745-5860954:1:exon

position:5860745:1
position: 5860745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5860954:1
position: 5860954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5870885-5871530:1:exon

position:5870885:1
position: 5870885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NTPCR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C1orf57
alternative label: C28H1orf57
gene: NTPCR
gene synonym: C1orf57; C28H1orf57
product: nucleoside-triphosphatase, cancer-related, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 175 samples with support for all annotated introns
transcript id: XM_010820424.3
SIO_010081: NTPCR
subclass of: SO_0000673
so part of: NTPCR
location: join(5833263..5833405,5833520..5833576,5839014..5839176,5839790..5839886,5860745..5860954,5870885..5871530)
location: region:5833263-5871530:1
so has part: feature:5833263-5833405:1:exon
so has part: feature:5833520-5833576:1:exon
so has part: feature:5839014-5839176:1:exon
so has part: feature:5839790-5839886:1:exon
so has part: feature:5860745-5860954:1:exon
so has part: feature:5870885-5871530:1:exon

position:5833263:1
position: 5833263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5833263-5833405:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5833520-5833576:1:exon

position:5833520:1
position: 5833520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5833576:1
position: 5833576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5839014-5839176:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5839790-5839886:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5860745-5860954:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5870885-5871530:1:exon

NTPCR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf57
alternative label: C28H1orf57
gene: NTPCR
gene synonym: C1orf57; C28H1orf57
inference: similar to AA sequence (same species):RefSeq:NP_001069284.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: cancer-related nucleoside-triphosphatase homolog
translation: MARHVFLTGPPGVGKTTLIQKATEVLKSSGMPVDGFYTEEVRQGGRRIGFDVVTLSGIRGPLSRIGSEPLPGKRECRVGQYVVDLTSFEQLALPVLRNAGASGRPGQSICVIDEVGKMELFSQPFIQAVRQVLSIPGTVVLGTIPVPKGKPLALVEEIRTRKDVKVFSVTKENRNHLLPEIVTHMQSSRK
SIO_010081: NTPCR
subclass of: SO_0000673
so part of: NTPCR
location: join(5833372..5833405,5839014..5839176,5839790..5839886,5860745..5860954,5870885..5870953)
location: region:5833372-5870953:1
so has part: feature:5833372-5833405:1:exon
so has part: feature:5839014-5839176:1:exon
so has part: feature:5839790-5839886:1:exon
so has part: feature:5860745-5860954:1:exon
so has part: feature:5870885-5870953:1:exon

NP_001069284.1
type: Protein
SIO_000068: ncbiprotein

position:5833372:1
position: 5833372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5870953:1
position: 5870953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5833372-5833405:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5839014-5839176:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5839790-5839886:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5860745-5860954:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5870885-5870953:1:exon

NTPCR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C1orf57
alternative label: C28H1orf57
gene: NTPCR
gene synonym: C1orf57; C28H1orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cancer-related nucleoside-triphosphatase homolog isoform X1
translation: MPVDGFYTEEVRQGGRRIGFDVVTLSGIRGPLSRIGSEPLPGKRECRVGQYVVDLTSFEQLALPVLRNAGASGRPGQSICVIDEVGKMELFSQPFIQAVRQVLSTPGTVVLGTIPVPKGKPLALVEEIRTRKDVKVFSVTKENRNHLLPEIVTHMQSSRK
SIO_010081: NTPCR
subclass of: SO_0000673
so part of: NTPCR
location: join(5839070..5839176,5839790..5839886,5860745..5860954,5870885..5870953)
location: region:5839070-5870953:1
so has part: feature:5839070-5839176:1:exon
so has part: feature:5839790-5839886:1:exon
so has part: feature:5860745-5860954:1:exon
so has part: feature:5870885-5870953:1:exon

XP_010818726.1
type: Protein
SIO_000068: ncbiprotein

position:5839070:1
position: 5839070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5839070-5839176:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5839790-5839886:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5860745-5860954:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5870885-5870953:1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5864091..5864162
location: region:5864091-5864162:1
so has part: feature:5864091-5864162:1:exon
subclass of: SO_0000663

112444821
type: Gene
SIO_000068: ncbigene

position:5864091:1
position: 5864091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5864162:1
position: 5864162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5864091-5864162:1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9913
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5864123..5864125,aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: 5864091..5864162
location: region:5864091-5864162:1
so has part: feature:5864091-5864162:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5864091-5864162:1:exon

PCNX2
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: PCNX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5876184..6186786)
location: region:5876184-6186786:-1
so has part: feature:5876184-6186786:-1:exon
subclass of: SO_0000010

528971
type: Gene
SIO_000068: ncbigene

position:5876184:-1
position: 5876184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6186786:-1
position: 6186786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5876184-6186786:-1:exon

PCNX2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: PCNX2
product: pecanex homolog 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_002698790.6
SIO_010081: PCNX2
subclass of: SO_0000673
so part of: PCNX2
location: complement(join(5876184..5877166,5878666..5879114,5894981..5895168,5896429..5896703,5897725..5897955,5898679..5898823,5918441..5918553,5920492..5920725,5930048..5930301,5945851..5946066,5950767..5950825,5977857..5977986,5983910..5984018,6015424..6015601,6019828..6019969,6042331..6042481,6043262..6043354,6057046..6057142,6058601..6058710,6087721..6087812,6089428..6089538,6099076..6099247,6111768..6111800,6111887..6112040,6122162..6122307,6127353..6127488,6145693..6145786,6149137..6149282,6149408..6149555,6159541..6160818,6162404..6162440,6163119..6163236,6164800..6165005,6186587..6186786))
location: region:5876184-6186786:-1
so has part: feature:6186587-6186786:-1:exon
so has part: feature:6164800-6165005:-1:exon
so has part: feature:6163119-6163236:-1:exon
so has part: feature:6162404-6162440:-1:exon
so has part: feature:6159541-6160818:-1:exon
so has part: feature:6149408-6149555:-1:exon
so has part: feature:6149137-6149282:-1:exon
so has part: feature:6145693-6145786:-1:exon
so has part: feature:6127353-6127488:-1:exon
so has part: feature:6122162-6122307:-1:exon
so has part: feature:6111887-6112040:-1:exon
so has part: feature:6111768-6111800:-1:exon
so has part: feature:6099076-6099247:-1:exon
so has part: feature:6089428-6089538:-1:exon
so has part: feature:6087721-6087812:-1:exon
so has part: feature:6058601-6058710:-1:exon
so has part: feature:6057046-6057142:-1:exon
so has part: feature:6043262-6043354:-1:exon
so has part: feature:6042331-6042481:-1:exon
so has part: feature:6019828-6019969:-1:exon
so has part: feature:6015424-6015601:-1:exon
so has part: feature:5983910-5984018:-1:exon
so has part: feature:5977857-5977986:-1:exon
so has part: feature:5950767-5950825:-1:exon
so has part: feature:5945851-5946066:-1:exon
so has part: feature:5930048-5930301:-1:exon
so has part: feature:5920492-5920725:-1:exon
so has part: feature:5918441-5918553:-1:exon
so has part: feature:5898679-5898823:-1:exon
so has part: feature:5897725-5897955:-1:exon
so has part: feature:5896429-5896703:-1:exon
so has part: feature:5894981-5895168:-1:exon
so has part: feature:5878666-5879114:-1:exon
so has part: feature:5876184-5877166:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6186587-6186786:-1:exon

position:6186587:-1
position: 6186587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6164800-6165005:-1:exon

position:6164800:-1
position: 6164800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6165005:-1
position: 6165005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6163119-6163236:-1:exon

position:6163119:-1
position: 6163119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6163236:-1
position: 6163236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6162404-6162440:-1:exon

position:6162404:-1
position: 6162404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6162440:-1
position: 6162440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6159541-6160818:-1:exon

position:6159541:-1
position: 6159541
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6160818:-1
position: 6160818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6149408-6149555:-1:exon

position:6149408:-1
position: 6149408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6149555:-1
position: 6149555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6149137-6149282:-1:exon

position:6149137:-1
position: 6149137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6149282:-1
position: 6149282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6145693-6145786:-1:exon

position:6145693:-1
position: 6145693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6145786:-1
position: 6145786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6127353-6127488:-1:exon

position:6127353:-1
position: 6127353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6127488:-1
position: 6127488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6122162-6122307:-1:exon

position:6122162:-1
position: 6122162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6122307:-1
position: 6122307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6111887-6112040:-1:exon

position:6111887:-1
position: 6111887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6112040:-1
position: 6112040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6111768-6111800:-1:exon

position:6111768:-1
position: 6111768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6111800:-1
position: 6111800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6099076-6099247:-1:exon

position:6099076:-1
position: 6099076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6099247:-1
position: 6099247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6089428-6089538:-1:exon

position:6089428:-1
position: 6089428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6089538:-1
position: 6089538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6087721-6087812:-1:exon

position:6087721:-1
position: 6087721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6087812:-1
position: 6087812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6058601-6058710:-1:exon

position:6058601:-1
position: 6058601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6058710:-1
position: 6058710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6057046-6057142:-1:exon

position:6057046:-1
position: 6057046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6057142:-1
position: 6057142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6043262-6043354:-1:exon

position:6043262:-1
position: 6043262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6043354:-1
position: 6043354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6042331-6042481:-1:exon

position:6042331:-1
position: 6042331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6042481:-1
position: 6042481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6019828-6019969:-1:exon

position:6019828:-1
position: 6019828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6019969:-1
position: 6019969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6015424-6015601:-1:exon

position:6015424:-1
position: 6015424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6015601:-1
position: 6015601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5983910-5984018:-1:exon

position:5983910:-1
position: 5983910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5984018:-1
position: 5984018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5977857-5977986:-1:exon

position:5977857:-1
position: 5977857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5977986:-1
position: 5977986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5950767-5950825:-1:exon

position:5950767:-1
position: 5950767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5950825:-1
position: 5950825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5945851-5946066:-1:exon

position:5945851:-1
position: 5945851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5946066:-1
position: 5946066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:5930048-5930301:-1:exon

position:5930048:-1
position: 5930048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5930301:-1
position: 5930301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:5920492-5920725:-1:exon

position:5920492:-1
position: 5920492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5920725:-1
position: 5920725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:5918441-5918553:-1:exon

position:5918441:-1
position: 5918441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5918553:-1
position: 5918553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:5898679-5898823:-1:exon

position:5898679:-1
position: 5898679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5898823:-1
position: 5898823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:5897725-5897955:-1:exon

position:5897725:-1
position: 5897725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5897955:-1
position: 5897955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:5896429-5896703:-1:exon

position:5896429:-1
position: 5896429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5896703:-1
position: 5896703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:5894981-5895168:-1:exon

position:5894981:-1
position: 5894981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5895168:-1
position: 5895168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:5878666-5879114:-1:exon

position:5878666:-1
position: 5878666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5879114:-1
position: 5879114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:5876184-5877166:-1:exon

position:5877166:-1
position: 5877166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PCNX2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: PCNX2
product: pecanex homolog 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_005226237.4
SIO_010081: PCNX2
subclass of: SO_0000673
so part of: PCNX2
location: complement(join(5876184..5877166,5878666..5879114,5894981..5895168,5896429..5896703,5897725..5897955,5898679..5898823,5918441..5918553,5920492..5920725,5930048..5930301,5945851..5946066,5950767..5950825,5977857..5977986,5983910..5984018,6015424..6015601,6019828..6019969,6042331..6042481,6043262..6043354,6057046..6057142,6058601..6058710,6087721..6087812,6089428..6089538,6099076..6099247,6111768..6111800,6111887..6112040,6122162..6122307,6126493..6126519,6127353..6127488,6145693..6145786,6149137..6149282,6149408..6149555,6159541..6160818,6162404..6162440,6163119..6163236,6164800..6165005,6186587..6186786))
location: region:5876184-6186786:-1
so has part: feature:6186587-6186786:-1:exon
so has part: feature:6164800-6165005:-1:exon
so has part: feature:6163119-6163236:-1:exon
so has part: feature:6162404-6162440:-1:exon
so has part: feature:6159541-6160818:-1:exon
so has part: feature:6149408-6149555:-1:exon
so has part: feature:6149137-6149282:-1:exon
so has part: feature:6145693-6145786:-1:exon
so has part: feature:6127353-6127488:-1:exon
so has part: feature:6126493-6126519:-1:exon
so has part: feature:6122162-6122307:-1:exon
so has part: feature:6111887-6112040:-1:exon
so has part: feature:6111768-6111800:-1:exon
so has part: feature:6099076-6099247:-1:exon
so has part: feature:6089428-6089538:-1:exon
so has part: feature:6087721-6087812:-1:exon
so has part: feature:6058601-6058710:-1:exon
so has part: feature:6057046-6057142:-1:exon
so has part: feature:6043262-6043354:-1:exon
so has part: feature:6042331-6042481:-1:exon
so has part: feature:6019828-6019969:-1:exon
so has part: feature:6015424-6015601:-1:exon
so has part: feature:5983910-5984018:-1:exon
so has part: feature:5977857-5977986:-1:exon
so has part: feature:5950767-5950825:-1:exon
so has part: feature:5945851-5946066:-1:exon
so has part: feature:5930048-5930301:-1:exon
so has part: feature:5920492-5920725:-1:exon
so has part: feature:5918441-5918553:-1:exon
so has part: feature:5898679-5898823:-1:exon
so has part: feature:5897725-5897955:-1:exon
so has part: feature:5896429-5896703:-1:exon
so has part: feature:5894981-5895168:-1:exon
so has part: feature:5878666-5879114:-1:exon
so has part: feature:5876184-5877166:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6186587-6186786:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6164800-6165005:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6163119-6163236:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6162404-6162440:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6159541-6160818:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6149408-6149555:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6149137-6149282:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6145693-6145786:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6127353-6127488:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6126493-6126519:-1:exon

position:6126493:-1
position: 6126493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6126519:-1
position: 6126519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6122162-6122307:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6111887-6112040:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6111768-6111800:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6099076-6099247:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6089428-6089538:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6087721-6087812:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6058601-6058710:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6057046-6057142:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6043262-6043354:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6042331-6042481:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6019828-6019969:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6015424-6015601:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5983910-5984018:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5977857-5977986:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5950767-5950825:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5945851-5946066:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5930048-5930301:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5920492-5920725:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5918441-5918553:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5898679-5898823:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5897725-5897955:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5896429-5896703:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5894981-5895168:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:5878666-5879114:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:5876184-5877166:-1:exon

PCNX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: PCNX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pecanex-like protein 2 isoform X2
translation: MGSQVLQLLRQGVWAALTGGWYHDPDQSKFTNSCHLYLWLFLFLLPLALHLAFPPDAITVFLYCSSVTIFFTVIKLVSYRLHLMFDKGEVIQQRPSGKKEKPRKDKEANGDHITNHRNPSNNGQINSGKKEADRSLSTPPLHGSSGGQSINSHHSSGLLDLPAQETVEDLKGVVLSDDQPMAPVSSTSPAIKAESLPASKAPVLGAVTTSAIPLKPVVAETCISDQGKERGGRGQPPFHHRSEGGLVDKETVKKLPYLSLSQYDLLETDVSVQPWGSENSVLIPEPGHYASIRDKLQNKSPQDSLSSSCPQCNTVIARPVQGQVSQQVDSTLNQDVGDSDSEVAVTLIDTSQPGDPLSLHEPIRIVITMSSTPNSMTDLESSLHLKAVGTQPSGFQADAEPAPPGAASPLNVEQMRIPVITFQLSEDAGGMVCPESSGSGRTPERLTVEASSNPCSGYESGEGGSATQDHSPSPGDHCATPPTPNMVSESEVGMEAQANLDPSSCRTSQEKRHARVLSVDSGTDVFLSKSSAEIINDKEQTMPTSKSDLEAKEGQVPNESNFLEFVSLLESINTSKVVVSNQRNEPTEQNKDSRLPADNCSQEKKEEILESEKPSGPIAKQGKPDVQSQDHTSTSPGLTEPAKIPTLFQGNRQRQIIYRVTSQQDSSVLQVISGPETSVQDEMSVDAMHVFIDEHGEIKSCYLKSGNQKEGPFQHQPSNYEGFSHAGDLQISSSSTTTSESQDPSSGDPAVSALQQQLLLMVARRTQSETPRHLSQDLEDSSCSSTQGKFNREQFYKFIIFPGKWIKVWYDRLTLLALLDRTEDVKENVLAVLLIILVSLLGFLTLNQGFCKDIWTLLFCLIMASCQYSLLKSVQPDPASPIHGHNQIITYSRPIYFCVLCGLILLLDTGAKARHPPTYIVYGLKLFSPESLQWARDLLIVFLYCFPAISLLGLFPQINTFCIYLLEQIDMLFFGGSAVSGLPSAAYSVARSASAAALLHVFCFSAVKEPWSTQHIPALFSAFCGLLVALSYHLSRQSSDPSVLLSFIHCKLFHKFLHQNLEELASDPLPMKMKDSVKDILKSDLIICLVAAVLSFAVSASTVFLSLRPFLSIVLFALAGAVGFVTHYLLPQLRKHHPWMWISHPILKSREYQQREVRDVAHLMWFERLYVWLQCFEKYILYPAIILNALTTDAFSISNYRRLGTHWDIFLMVIAGMKLLRTSFCNPVHQFTHLGFTVIFFHFDYKDISESFLLDFFMVSILFSKLGDLLHKLQFVLTYVAPWQMAWGSSFHVFAQLFAIPHSAMLFFQTFATSIVSTPLSPFLGSVIFITSYVRPVKFWEKNYNTRRVDNSNTRLVVQIEKDSGSDGNNLNSIFYEHLTRALQESLCGDLILGRWGNYSSGDCFILASDYLNAFVHLIEIGNGLVTFQLRGLEFRGTYCQQREVEAIMEGDEDDRGCCCCKPGHLPHLLSCNAAFNLRWLTWEITRTQYILEGYSIMDNNAATMLQVFDLRRILIRYYIKSIIYYMVTSPKLFSWIKNESLLKTLQPFAKWHYIERDLAMFNMNIDDDYVPCLQGITRASYCNVYLEWIQYCAQKRQEPSKPLESDEDSPLVTLSFALCILGRRALGTAAHNMALSLDSFLYGLHALFKGDFRITARDEWVFADIDLLHKVVVPALRMSLKLHQDQFTCPDEYEDPAVLYEAIQSFEKKVVICHEGDPAWRGAVLANKEELLTLRHVVDEGTDEYKVLMLHRSFLSFKVIKVNRECVRGLWAGQQQELIFLRNRNPERGSIQNNKQVLRNLINSSCDQPLGYPMYVSPLTTSYLGTHRQLKNIWSGPVTLDSIRAWLRTKWLRVRKDCDAAGQPGAGNTEDMDAGGAPPAGGNSAPSGESRESSAEQPRKDGSRHWSPREGTRRPGRRKGRSQSVQAHRALSQTPPVLRASGPVAGSRPTFLQTSTSVHELAPRRSGSRLSLCPSAASLHSQPPAAPPAGPLSVRERAE…
SIO_010081: PCNX2
subclass of: SO_0000673
so part of: PCNX2
location: complement(join(5877005..5877166,5878666..5879114,5894981..5895168,5896429..5896703,5897725..5897955,5898679..5898823,5918441..5918553,5920492..5920725,5930048..5930301,5945851..5946066,5950767..5950825,5977857..5977986,5983910..5984018,6015424..6015601,6019828..6019969,6042331..6042481,6043262..6043354,6057046..6057142,6058601..6058710,6087721..6087812,6089428..6089538,6099076..6099247,6111768..6111800,6111887..6112040,6122162..6122307,6127353..6127488,6145693..6145786,6149137..6149282,6149408..6149555,6159541..6160818,6162404..6162440,6163119..6163236,6164800..6165005,6186587..6186739))
location: region:5877005-6186739:-1
so has part: feature:6186587-6186739:-1:exon
so has part: feature:6164800-6165005:-1:exon
so has part: feature:6163119-6163236:-1:exon
so has part: feature:6162404-6162440:-1:exon
so has part: feature:6159541-6160818:-1:exon
so has part: feature:6149408-6149555:-1:exon
so has part: feature:6149137-6149282:-1:exon
so has part: feature:6145693-6145786:-1:exon
so has part: feature:6127353-6127488:-1:exon
so has part: feature:6122162-6122307:-1:exon
so has part: feature:6111887-6112040:-1:exon
so has part: feature:6111768-6111800:-1:exon
so has part: feature:6099076-6099247:-1:exon
so has part: feature:6089428-6089538:-1:exon
so has part: feature:6087721-6087812:-1:exon
so has part: feature:6058601-6058710:-1:exon
so has part: feature:6057046-6057142:-1:exon
so has part: feature:6043262-6043354:-1:exon
so has part: feature:6042331-6042481:-1:exon
so has part: feature:6019828-6019969:-1:exon
so has part: feature:6015424-6015601:-1:exon
so has part: feature:5983910-5984018:-1:exon
so has part: feature:5977857-5977986:-1:exon
so has part: feature:5950767-5950825:-1:exon
so has part: feature:5945851-5946066:-1:exon
so has part: feature:5930048-5930301:-1:exon
so has part: feature:5920492-5920725:-1:exon
so has part: feature:5918441-5918553:-1:exon
so has part: feature:5898679-5898823:-1:exon
so has part: feature:5897725-5897955:-1:exon
so has part: feature:5896429-5896703:-1:exon
so has part: feature:5894981-5895168:-1:exon
so has part: feature:5878666-5879114:-1:exon
so has part: feature:5877005-5877166:-1:exon

XP_002698836.1
type: Protein
SIO_000068: ncbiprotein

position:5877005:-1
position: 5877005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6186739:-1
position: 6186739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6186587-6186739:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6164800-6165005:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6163119-6163236:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6162404-6162440:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6159541-6160818:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6149408-6149555:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6149137-6149282:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6145693-6145786:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6127353-6127488:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6122162-6122307:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6111887-6112040:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6111768-6111800:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6099076-6099247:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6089428-6089538:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6087721-6087812:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6058601-6058710:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6057046-6057142:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6043262-6043354:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6042331-6042481:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6019828-6019969:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6015424-6015601:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5983910-5984018:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5977857-5977986:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5950767-5950825:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5945851-5946066:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5930048-5930301:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5920492-5920725:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5918441-5918553:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5898679-5898823:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5897725-5897955:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5896429-5896703:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5894981-5895168:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5878666-5879114:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:5877005-5877166:-1:exon

PCNX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: PCNX2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pecanex-like protein 2 isoform X1
translation: MGSQVLQLLRQGVWAALTGGWYHDPDQSKFTNSCHLYLWLFLFLLPLALHLAFPPDAITVFLYCSSVTIFFTVIKLVSYRLHLMFDKGEVIQQRPSGKKEKPRKDKEANGDHITNHRNPSNNGQINSGKKEADRSLSTPPLHGSSGGQSINSHHSSGLLDLPAQETVEDLKGVVLSDDQPMAPVSSTSPAIKAESLPASKAPVLGAVTTSAIPLKPVVAETCISDQGKERGGRGQPPFHHRSEGGLVDKETVKKLPYLSLSQYDLLETDVSVQPWGSENSVLIPEPGHYASIRDKLQNKSPQDSLSSSCPQCNTVIARPVQGQVSQQVDSTLNQDVGDSDSEVAVTLIDTSQPGDPLSLHEPIRIVITMSSTPNSMTDLESSLHLKAVGTQPSGFQADAEPAPPGAASPLNVEQMRIPVITFQLSEDAGGMVCPESSGSGRTPERLTVEASSNPCSGYESGEGGSATQDHSPSPGDHCATPPTPNMVSESEVGMEAQANLDPSSCRTSQEKRHARVLSVDSGTDVFLSKSSAEIINDKEQTMPTSKSDLEAKEGQVPNESNFLEFVSLLESINTSKVVVSNQRNEPTEQNKDSRLPADNCSQEKKEEILESEKPSGPIAKQGKPDVQSQDHTSTSPGLTEPAKIPTLFQGNRQRQIIYRVTSQQDSSVLQVISGPETSVQDEMSVDAMHVFIDEHGEIKSCYLKSGNQKEGPFQHQPSNYEGFSHAGDLQISSSSTTTSESQDPSSGDPAVSALQQQLLLMVARRTQSETPRRISPTKRNTHLSQDLEDSSCSSTQGKFNREQFYKFIIFPGKWIKVWYDRLTLLALLDRTEDVKENVLAVLLIILVSLLGFLTLNQGFCKDIWTLLFCLIMASCQYSLLKSVQPDPASPIHGHNQIITYSRPIYFCVLCGLILLLDTGAKARHPPTYIVYGLKLFSPESLQWARDLLIVFLYCFPAISLLGLFPQINTFCIYLLEQIDMLFFGGSAVSGLPSAAYSVARSASAAALLHVFCFSAVKEPWSTQHIPALFSAFCGLLVALSYHLSRQSSDPSVLLSFIHCKLFHKFLHQNLEELASDPLPMKMKDSVKDILKSDLIICLVAAVLSFAVSASTVFLSLRPFLSIVLFALAGAVGFVTHYLLPQLRKHHPWMWISHPILKSREYQQREVRDVAHLMWFERLYVWLQCFEKYILYPAIILNALTTDAFSISNYRRLGTHWDIFLMVIAGMKLLRTSFCNPVHQFTHLGFTVIFFHFDYKDISESFLLDFFMVSILFSKLGDLLHKLQFVLTYVAPWQMAWGSSFHVFAQLFAIPHSAMLFFQTFATSIVSTPLSPFLGSVIFITSYVRPVKFWEKNYNTRRVDNSNTRLVVQIEKDSGSDGNNLNSIFYEHLTRALQESLCGDLILGRWGNYSSGDCFILASDYLNAFVHLIEIGNGLVTFQLRGLEFRGTYCQQREVEAIMEGDEDDRGCCCCKPGHLPHLLSCNAAFNLRWLTWEITRTQYILEGYSIMDNNAATMLQVFDLRRILIRYYIKSIIYYMVTSPKLFSWIKNESLLKTLQPFAKWHYIERDLAMFNMNIDDDYVPCLQGITRASYCNVYLEWIQYCAQKRQEPSKPLESDEDSPLVTLSFALCILGRRALGTAAHNMALSLDSFLYGLHALFKGDFRITARDEWVFADIDLLHKVVVPALRMSLKLHQDQFTCPDEYEDPAVLYEAIQSFEKKVVICHEGDPAWRGAVLANKEELLTLRHVVDEGTDEYKVLMLHRSFLSFKVIKVNRECVRGLWAGQQQELIFLRNRNPERGSIQNNKQVLRNLINSSCDQPLGYPMYVSPLTTSYLGTHRQLKNIWSGPVTLDSIRAWLRTKWLRVRKDCDAAGQPGAGNTEDMDAGGAPPAGGNSAPSGESRESSAEQPRKDGSRHWSPREGTRRPGRRKGRSQSVQAHRALSQTPPVLRASGPVAGSRPTFLQTSTSVHELAPRRSGSRLSLCPSAASLHSQPPAAPPAG…
SIO_010081: PCNX2
subclass of: SO_0000673
so part of: PCNX2
location: complement(join(5877005..5877166,5878666..5879114,5894981..5895168,5896429..5896703,5897725..5897955,5898679..5898823,5918441..5918553,5920492..5920725,5930048..5930301,5945851..5946066,5950767..5950825,5977857..5977986,5983910..5984018,6015424..6015601,6019828..6019969,6042331..6042481,6043262..6043354,6057046..6057142,6058601..6058710,6087721..6087812,6089428..6089538,6099076..6099247,6111768..6111800,6111887..6112040,6122162..6122307,6126493..6126519,6127353..6127488,6145693..6145786,6149137..6149282,6149408..6149555,6159541..6160818,6162404..6162440,6163119..6163236,6164800..6165005,6186587..6186739))
location: region:5877005-6186739:-1
so has part: feature:6186587-6186739:-1:exon
so has part: feature:6164800-6165005:-1:exon
so has part: feature:6163119-6163236:-1:exon
so has part: feature:6162404-6162440:-1:exon
so has part: feature:6159541-6160818:-1:exon
so has part: feature:6149408-6149555:-1:exon
so has part: feature:6149137-6149282:-1:exon
so has part: feature:6145693-6145786:-1:exon
so has part: feature:6127353-6127488:-1:exon
so has part: feature:6126493-6126519:-1:exon
so has part: feature:6122162-6122307:-1:exon
so has part: feature:6111887-6112040:-1:exon
so has part: feature:6111768-6111800:-1:exon
so has part: feature:6099076-6099247:-1:exon
so has part: feature:6089428-6089538:-1:exon
so has part: feature:6087721-6087812:-1:exon
so has part: feature:6058601-6058710:-1:exon
so has part: feature:6057046-6057142:-1:exon
so has part: feature:6043262-6043354:-1:exon
so has part: feature:6042331-6042481:-1:exon
so has part: feature:6019828-6019969:-1:exon
so has part: feature:6015424-6015601:-1:exon
so has part: feature:5983910-5984018:-1:exon
so has part: feature:5977857-5977986:-1:exon
so has part: feature:5950767-5950825:-1:exon
so has part: feature:5945851-5946066:-1:exon
so has part: feature:5930048-5930301:-1:exon
so has part: feature:5920492-5920725:-1:exon
so has part: feature:5918441-5918553:-1:exon
so has part: feature:5898679-5898823:-1:exon
so has part: feature:5897725-5897955:-1:exon
so has part: feature:5896429-5896703:-1:exon
so has part: feature:5894981-5895168:-1:exon
so has part: feature:5878666-5879114:-1:exon
so has part: feature:5877005-5877166:-1:exon

XP_005226294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6186587-6186739:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6164800-6165005:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6163119-6163236:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6162404-6162440:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6159541-6160818:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6149408-6149555:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6149137-6149282:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6145693-6145786:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6127353-6127488:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6126493-6126519:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6122162-6122307:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6111887-6112040:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6111768-6111800:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6099076-6099247:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6089428-6089538:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6087721-6087812:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6058601-6058710:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6057046-6057142:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6043262-6043354:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6042331-6042481:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6019828-6019969:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6015424-6015601:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5983910-5984018:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5977857-5977986:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5950767-5950825:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5945851-5946066:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5930048-5930301:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5920492-5920725:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5918441-5918553:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5898679-5898823:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5897725-5897955:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5896429-5896703:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5894981-5895168:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:5878666-5879114:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:5877005-5877166:-1:exon

LOC112444727
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444727
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6201206..6207669)
location: region:6201206-6207669:-1
so has part: feature:6201206-6207669:-1:exon
subclass of: SO_0000011

112444727
type: Gene
SIO_000068: ncbigene

position:6201206:-1
position: 6201206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6207669:-1
position: 6207669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6201206-6207669:-1:exon

LOC112444727
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC112444727
product: uncharacterized LOC112444727
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_003033064.1
SIO_010081: LOC112444727
subclass of: SO_0000673
so part of: LOC112444727
location: complement(join(6201206..6201336,6203049..6207669))
location: region:6201206-6207669:-1
so has part: feature:6203049-6207669:-1:exon
so has part: feature:6201206-6201336:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6203049-6207669:-1:exon

position:6203049:-1
position: 6203049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6201206-6201336:-1:exon

position:6201336:-1
position: 6201336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MAP3K21
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: MAP3K21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6201976..6260951
location: region:6201976-6260951:1
so has part: feature:6201976-6260951:1:exon
subclass of: SO_0000010

616014
type: Gene
SIO_000068: ncbigene

position:6201976:1
position: 6201976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6260951:1
position: 6260951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6201976-6260951:1:exon

MAP3K21
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: MAP3K21
product: mitogen-activated protein kinase kinase kinase 21
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 4 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 96 samples with support for all annotated introns
transcript id: XM_005226238.4
SIO_010081: MAP3K21
subclass of: SO_0000673
so part of: MAP3K21
location: join(6201976..6203103,6219555..6219735,6228208..6228356,6229375..6229550,6241321..6241561,6250859..6250981,6252861..6253011,6253423..6253520,6255564..6256349,6257884..6260951)
location: region:6201976-6260951:1
so has part: feature:6201976-6203103:1:exon
so has part: feature:6219555-6219735:1:exon
so has part: feature:6228208-6228356:1:exon
so has part: feature:6229375-6229550:1:exon
so has part: feature:6241321-6241561:1:exon
so has part: feature:6250859-6250981:1:exon
so has part: feature:6252861-6253011:1:exon
so has part: feature:6253423-6253520:1:exon
so has part: feature:6255564-6256349:1:exon
so has part: feature:6257884-6260951:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6201976-6203103:1:exon

position:6203103:1
position: 6203103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6219555-6219735:1:exon

position:6219555:1
position: 6219555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6219735:1
position: 6219735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6228208-6228356:1:exon

position:6228208:1
position: 6228208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6228356:1
position: 6228356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6229375-6229550:1:exon

position:6229375:1
position: 6229375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6229550:1
position: 6229550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6241321-6241561:1:exon

position:6241321:1
position: 6241321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6241561:1
position: 6241561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6250859-6250981:1:exon

position:6250859:1
position: 6250859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6250981:1
position: 6250981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6252861-6253011:1:exon

position:6252861:1
position: 6252861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6253011:1
position: 6253011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6253423-6253520:1:exon

position:6253423:1
position: 6253423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6253520:1
position: 6253520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6255564-6256349:1:exon

position:6255564:1
position: 6255564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6256349:1
position: 6256349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6257884-6260951:1:exon

position:6257884:1
position: 6257884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MAP3K21
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: MAP3K21
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mitogen-activated protein kinase kinase kinase 21
translation: MALPGAESAPDRPGSPARGAPTGSASSSSASSGGSASAGAGLWAALYDYEARGEDELSLRRGQLVEVLSQDAAVSGDEGWWAGQVQRRLGIFPANYVAPCRPAAHRTPQPARQPPPRPGSPVHVDFERLELKELIGAGGFGQVYRATWQGQEVAVKAARCDPEQDAAAAAESVRREARLFSMLRHPNIIELRGVCLRQPHLCLVLEFARGGALNRALAAANATPDPRAPSPRRARRIPPHVLVNWAVQIARGMLYLHEEAVVPILHRDLKSSNILLLEKIEHDDICNKTLKITDFGLAREWHRTTRMSAAGTYAWMAPEVIKSSLFSKGSDIWSYGVVLWELLTGEVPYRGIDGLAVAYGVAVNKLTLPIPSTCPEPFAKLMKECWQQDPHIRPSFASILEQLTEIEKAVMTEMPQESFHSMQDDWKLEIQQMFDELRTKEKELRSREEELTRAALQQKSQEELLRRREQQLAAREIDVLERELNILIFQLNQEKPNVKKRKGKFKRSRLKLRDGHRISLPSDFQHKITVQASPNLDKRRSLNSSSSSPPSSPTVIPRLRAIQLTSDESNKTWGRNTVCRQEEFEDIKRNFKKKGCTWGPNSIQMKERTDGRERIRPLSDGNSPWSTIVIKNQKTTPLASLFVDQPGACEEPKLAPDGLEHRKPKQIKSPTQAYIDLPLWKDGQRENPVEPESREEGTPVSPAADTPQGTPPNSLSRSPQRKKTESALYGCTMLLASVALGLDIRELTKAQAPEDPLPKEDRKKREGIFQRAPKSRRSASPAARLLAVGEGASSTPSPPPSTIANLLSVPSLSTKCLLQTDGEDSFESSTHISCAPRVPTPDPCPAFGGRGQKSTPMPGLETSRDGWRNPPPSFMELTRGGVSYAAASKERAASHRRTMSDGSAPQPPALISAPGASELPSEWVWGMPPSLSGPHSDLPSEVPPEKQRAVHMVPLPHPPPLRSRGGALQAFPPRAESQPSQAGPAVGGPGPAHSCPLGPKKRTQPHMPSLLDSDVEGQSRDRTVPLCRMRSRASRPSLYELEKEFLS
SIO_010081: MAP3K21
subclass of: SO_0000673
so part of: MAP3K21
location: join(6202284..6203103,6219555..6219735,6228208..6228356,6229375..6229550,6241321..6241561,6250859..6250981,6252861..6253011,6253423..6253520,6255564..6256349,6257884..6258302)
location: region:6202284-6258302:1
so has part: feature:6202284-6203103:1:exon
so has part: feature:6219555-6219735:1:exon
so has part: feature:6228208-6228356:1:exon
so has part: feature:6229375-6229550:1:exon
so has part: feature:6241321-6241561:1:exon
so has part: feature:6250859-6250981:1:exon
so has part: feature:6252861-6253011:1:exon
so has part: feature:6253423-6253520:1:exon
so has part: feature:6255564-6256349:1:exon
so has part: feature:6257884-6258302:1:exon

XP_005226295.1
type: Protein
SIO_000068: ncbiprotein

position:6202284:1
position: 6202284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6258302:1
position: 6258302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6202284-6203103:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6219555-6219735:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6228208-6228356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6229375-6229550:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6241321-6241561:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6250859-6250981:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6252861-6253011:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6253423-6253520:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6255564-6256349:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6257884-6258302:1:exon

KCNK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: KCNK1
note: potassium two pore domain channel subfamily K member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 6451737..6519068
location: region:6451737-6519068:1
so has part: feature:6451737-6519068:1:exon
subclass of: SO_0000010

505563
type: Gene
SIO_000068: ncbigene

position:6451737:1
position: 6451737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6519068:1
position: 6519068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6451737-6519068:1:exon

KCNK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: KCNK1
product: potassium two pore domain channel subfamily K member 1
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001075207.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 non-frameshifting indel compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001075207.1
SIO_010081: KCNK1
subclass of: SO_0000673
so part of: KCNK1
location: join(6451737..6452120,6513773..6514168,6518175..6519068)
location: region:6451737-6519068:1
so has part: feature:6451737-6452120:1:exon
so has part: feature:6513773-6514168:1:exon
so has part: feature:6518175-6519068:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6451737-6452120:1:exon

position:6452120:1
position: 6452120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6513773-6514168:1:exon

position:6513773:1
position: 6513773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6514168:1
position: 6514168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6518175-6519068:1:exon

position:6518175:1
position: 6518175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KCNK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: KCNK1
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: potassium channel subfamily K member 1
translation: MLQSLAGSSCVRLVERHRSAWCFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEPQLEQFLGRVLEASNYGVSVLSNASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRVTIHVTRRPVLYFHVRWGFSKQAVAIVHAVLLGVVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDKEEDQMHIIEHDQLSFSSITDQAAGVQEDQKQNEPFVSPQPPALADGASDH
SIO_010081: KCNK1
subclass of: SO_0000673
so part of: KCNK1
location: join(6451766..6452120,6513773..6514168,6518175..6518434)
location: region:6451766-6518434:1
so has part: feature:6451766-6452120:1:exon
so has part: feature:6513773-6514168:1:exon
so has part: feature:6518175-6518434:1:exon

NP_001068675.1
type: Protein
SIO_000068: ncbiprotein

position:6451766:1
position: 6451766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6518434:1
position: 6518434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6451766-6452120:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6513773-6514168:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6518175-6518434:1:exon

TRNAC-ACA
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRNAC-ACA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 6608071..6608142
location: region:6608071-6608142:1
so has part: feature:6608071-6608142:1:exon
subclass of: SO_0000663

112444831
type: Gene
SIO_000068: ncbigene

position:6608071:1
position: 6608071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6608142:1
position: 6608142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6608071-6608142:1:exon

TRNAC-ACA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9913
gene: TRNAC-ACA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA cysteine (anticodon ACA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:6608104..6608106,aa:Cys,seq:aca)
SIO_010081: TRNAC-ACA
subclass of: SO_0000673
so part of: TRNAC-ACA
location: 6608071..6608142
location: region:6608071-6608142:1
so has part: feature:6608071-6608142:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6608071-6608142:1:exon

SLC35F3
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: SLC35F3
note: solute carrier family 35 member F3; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 6720734..7155385
location: region:6720734-7155385:1
so has part: feature:6720734-7155385:1:exon
subclass of: SO_0000010

538365
type: Gene
SIO_000068: ncbigene

position:6720734:1
position: 6720734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7155385:1
position: 7155385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6720734-7155385:1:exon

SLC35F3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SLC35F3
product: solute carrier family 35 member F3
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001192935.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001192935.1
SIO_010081: SLC35F3
subclass of: SO_0000673
so part of: SLC35F3
location: join(6720734..6720786,6721151..6721380,7021652..7021976,7136855..7137074,7144296..7144421,7147014..7147206,7148739..7148828,7153890..7155385)
location: region:6720734-7155385:1
so has part: feature:6720734-6720786:1:exon
so has part: feature:6721151-6721380:1:exon
so has part: feature:7021652-7021976:1:exon
so has part: feature:7136855-7137074:1:exon
so has part: feature:7144296-7144421:1:exon
so has part: feature:7147014-7147206:1:exon
so has part: feature:7148739-7148828:1:exon
so has part: feature:7153890-7155385:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6720734-6720786:1:exon

position:6720786:1
position: 6720786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6721151-6721380:1:exon

position:6721151:1
position: 6721151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6721380:1
position: 6721380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7021652-7021976:1:exon

position:7021652:1
position: 7021652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7021976:1
position: 7021976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7136855-7137074:1:exon

position:7136855:1
position: 7136855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7137074:1
position: 7137074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7144296-7144421:1:exon

position:7144296:1
position: 7144296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7144421:1
position: 7144421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7147014-7147206:1:exon

position:7147014:1
position: 7147014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7147206:1
position: 7147206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7148739-7148828:1:exon

position:7148739:1
position: 7148739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7148828:1
position: 7148828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7153890-7155385:1:exon

position:7153890:1
position: 7153890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SLC35F3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SLC35F3
inference: similar to AA sequence (same species):RefSeq:NP_001179864.1
exception: annotated by transcript or proteomic data
note: The RefSeq protein has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: putative thiamine transporter SLC35F3
translation: MGIREFPGSAPRGKGIAIGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSVEDLTSGPVGLTSIEERILRITGYYGYQPWATSYKREERPRDSPGPAEAQVPAGTEAGGRPSRHCWRCSRAQLKKIFWGVAVVLCVCASWAGATQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYAGHICKSAEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPVILYFTKVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSKIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEAAEGGADLGLGLQSKSRRARPSFAR
SIO_010081: SLC35F3
subclass of: SO_0000673
so part of: SLC35F3
location: join(6720734..6720786,6721151..6721380,7021652..7021976,7136855..7137074,7144296..7144421,7147014..7147206,7148739..7148828,7153890..7154125)
location: region:6720734-7154125:1
so has part: feature:6720734-6720786:1:exon
so has part: feature:6721151-6721380:1:exon
so has part: feature:7021652-7021976:1:exon
so has part: feature:7136855-7137074:1:exon
so has part: feature:7144296-7144421:1:exon
so has part: feature:7147014-7147206:1:exon
so has part: feature:7148739-7148828:1:exon
so has part: feature:7153890-7154125:1:exon

NP_001179864.1
type: Protein
SIO_000068: ncbiprotein

position:7154125:1
position: 7154125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6720734-6720786:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6721151-6721380:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7021652-7021976:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7136855-7137074:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7144296-7144421:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7147014-7147206:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7148739-7148828:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7153890-7154125:1:exon

SLC35F3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: SLC35F3
product: solute carrier family 35 member F3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005226233.4
SIO_010081: SLC35F3
subclass of: SO_0000673
so part of: SLC35F3
location: join(7000303..7000555,7021652..7021976,7136855..7137074,7144296..7144421,7147014..7147206,7148739..7148828,7153890..7155385)
location: region:7000303-7155385:1
so has part: feature:7000303-7000555:1:exon
so has part: feature:7021652-7021976:1:exon
so has part: feature:7136855-7137074:1:exon
so has part: feature:7144296-7144421:1:exon
so has part: feature:7147014-7147206:1:exon
so has part: feature:7148739-7148828:1:exon
so has part: feature:7153890-7155385:1:exon

position:7000303:1
position: 7000303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7000303-7000555:1:exon

position:7000555:1
position: 7000555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7021652-7021976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7136855-7137074:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7144296-7144421:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7147014-7147206:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7148739-7148828:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7153890-7155385:1:exon

SLC35F3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: SLC35F3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative thiamine transporter SLC35F3 isoform X1
translation: MKKHSARVAPLSACNSPVLTLTKVEGEERPRDSPGPAEAQVPAGTEAGGRPSRHCWRCSRAQLKKIFWGVAVVLCVCASWAGATQLAKLTFRKFDAPFTLTWFATNWNFLFFPLYYAGHICKSAEKQSVKQRYRECCRFFGDNGLTLNVFFTKAAPFGVLWTLTNYLYLHAIKKINTTDVSVLFCCNKAFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVLFKLLLGSAKFGEAALFLSILGVFNILFITCIPVILYFTKVEYWSSFDDIPWGNLCGFSVLLLTFNIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSKIVFNGVRVIAIIIIGLGFLLLLLPEEWDVWLIKLLTRLKVRKKEEAAEGGADLGLGLQSKSRRARPSFAR
SIO_010081: SLC35F3
subclass of: SO_0000673
so part of: SLC35F3
location: join(7000480..7000555,7021652..7021976,7136855..7137074,7144296..7144421,7147014..7147206,7148739..7148828,7153890..7154125)
location: region:7000480-7154125:1
so has part: feature:7000480-7000555:1:exon
so has part: feature:7021652-7021976:1:exon
so has part: feature:7136855-7137074:1:exon
so has part: feature:7144296-7144421:1:exon
so has part: feature:7147014-7147206:1:exon
so has part: feature:7148739-7148828:1:exon
so has part: feature:7153890-7154125:1:exon

XP_005226290.2
type: Protein
SIO_000068: ncbiprotein

position:7000480:1
position: 7000480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7000480-7000555:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7021652-7021976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7136855-7137074:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7144296-7144421:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7147014-7147206:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7148739-7148828:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7153890-7154125:1:exon

LOC101902143
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC101902143
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7070067..7072297)
location: region:7070067-7072297:-1
so has part: feature:7070067-7072297:-1:exon

101902143
type: Gene
SIO_000068: ncbigene

position:7070067:-1
position: 7070067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7072297:-1
position: 7072297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7070067-7072297:-1:exon

LOC101902143
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC101902143
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 33% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101902143
subclass of: SO_0000673
so part of: LOC101902143
location: complement(7070067..7070963)
location: region:7070067-7070963:-1
so has part: feature:7070067-7070963:-1:exon

position:7070963:-1
position: 7070963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7070067-7070963:-1:exon

LOC101902143
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC101902143
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 33% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC101902143
subclass of: SO_0000673
so part of: LOC101902143
location: complement(7072250..7072297)
location: region:7072250-7072297:-1
so has part: feature:7072250-7072297:-1:exon

position:7072250:-1
position: 7072250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7072250-7072297:-1:exon

LOC104976172
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC104976172
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(7119256..7132245)
location: region:7119256-7132245:-1
so has part: feature:7119256-7132245:-1:exon

104976172
type: Gene
SIO_000068: ncbigene

position:7119256:-1
position: 7119256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7132245:-1
position: 7132245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7119256-7132245:-1:exon

LOC104976172
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC104976172
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC104976172
subclass of: SO_0000673
so part of: LOC104976172
location: complement(7119256..7119770)
location: region:7119256-7119770:-1
so has part: feature:7119256-7119770:-1:exon

position:7119770:-1
position: 7119770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7119256-7119770:-1:exon

LOC104976172
type: Exon
subclass of: SO_0000147
RO_0002162: 9913
gene: LOC104976172
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC104976172
subclass of: SO_0000673
so part of: LOC104976172
location: complement(7132189..7132245)
location: region:7132189-7132245:-1
so has part: feature:7132189-7132245:-1:exon

position:7132189:-1
position: 7132189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7132189-7132245:-1:exon

TRNAS-GGA
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRNAS-GGA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(7184491..7184562)
location: region:7184491-7184562:-1
so has part: feature:7184491-7184562:-1:exon
subclass of: SO_0000663

112444823
type: Gene
SIO_000068: ncbigene

position:7184491:-1
position: 7184491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7184562:-1
position: 7184562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7184491-7184562:-1:exon

TRNAS-GGA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9913
gene: TRNAS-GGA
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon GGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7184527..7184529),aa:Ser, seq:gga)
SIO_010081: TRNAS-GGA
subclass of: SO_0000673
so part of: TRNAS-GGA
location: complement(7184491..7184562)
location: region:7184491-7184562:-1
so has part: feature:7184491-7184562:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7184491-7184562:-1:exon

COA6
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
note: cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae); Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: 7188602..7197787
location: region:7188602-7197787:1
so has part: feature:7188602-7197787:1:exon
subclass of: SO_0000010

768072
type: Gene
SIO_000068: ncbigene

position:7188602:1
position: 7188602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7197787:1
position: 7197787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7188602-7197787:1:exon

COA6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
product: cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae), transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 4 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_024986781.1
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7188602..7188646,7189001..7189180,7189377..7189536,7196773..7197787)
location: region:7188602-7197787:1
so has part: feature:7188602-7188646:1:exon
so has part: feature:7189001-7189180:1:exon
so has part: feature:7189377-7189536:1:exon
so has part: feature:7196773-7197787:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7188602-7188646:1:exon

position:7188646:1
position: 7188646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7189001-7189180:1:exon

position:7189001:1
position: 7189001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7189180:1
position: 7189180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7189377-7189536:1:exon

position:7189377:1
position: 7189377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7189536:1
position: 7189536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7196773-7197787:1:exon

position:7196773:1
position: 7196773
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

COA6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
product: cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae), transcript variant 2
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001206643.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001206643.1
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7188607..7188646,7189377..7189536,7196773..7197119)
location: region:7188607-7197119:1
so has part: feature:7188607-7188646:1:exon
so has part: feature:7189377-7189536:1:exon
so has part: feature:7196773-7197119:1:exon

position:7188607:1
position: 7188607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7197119:1
position: 7197119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7188607-7188646:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7189377-7189536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7196773-7197119:1:exon

COA6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
product: cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae), transcript variant 3
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001206644.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001206644.1
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7188607..7188639,7189377..7189536,7196773..7197119)
location: region:7188607-7197119:1
so has part: feature:7188607-7188639:1:exon
so has part: feature:7189377-7189536:1:exon
so has part: feature:7196773-7197119:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7188607-7188639:1:exon

position:7188639:1
position: 7188639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7189377-7189536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7196773-7197119:1:exon

COA6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
product: cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae), transcript variant 1
inference: similar to RNA sequence, mRNA (same species):RefSeq:NM_001206642.1
exception: annotated by transcript or proteomic data
note: The RefSeq transcript has 1 substitution compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001206642.1
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7188629..7188846,7189377..7189536,7196773..7197119)
location: region:7188629-7197119:1
so has part: feature:7188629-7188846:1:exon
so has part: feature:7189377-7189536:1:exon
so has part: feature:7196773-7197119:1:exon

position:7188629:1
position: 7188629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7188629-7188846:1:exon

position:7188846:1
position: 7188846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7189377-7189536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7196773-7197119:1:exon

COA6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
product: cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae), transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 4 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XM_010820435.3
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7188881..7188970,7189377..7189536,7196773..7197787)
location: region:7188881-7197787:1
so has part: feature:7188881-7188970:1:exon
so has part: feature:7189377-7189536:1:exon
so has part: feature:7196773-7197787:1:exon

position:7188881:1
position: 7188881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7188881-7188970:1:exon

position:7188970:1
position: 7188970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7189377-7189536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7196773-7197787:1:exon

COA6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome c oxidase assembly factor 6 homolog isoform X1
translation: MDLSPLGMAAPTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGDFQPSKMTAKS
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7189176..7189180,7189377..7189536,7196773..7196868)
location: region:7189176-7196868:1
so has part: feature:7189176-7189180:1:exon
so has part: feature:7189377-7189536:1:exon
so has part: feature:7196773-7196868:1:exon

XP_024842549.1
type: Protein
SIO_000068: ncbiprotein

position:7189176:1
position: 7189176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7196868:1
position: 7196868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7189176-7189180:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7189377-7189536:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7196773-7196868:1:exon

COA6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: cytochrome c oxidase assembly factor 6 homolog
translation: MAAPTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGDFQPSKMTAKS
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7189393..7189536,7196773..7196868)
location: region:7189393-7196868:1
so has part: feature:7189393-7189536:1:exon
so has part: feature:7196773-7196868:1:exon

NP_001193571.1
type: Protein
SIO_000068: ncbiprotein

position:7189393:1
position: 7189393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7189393-7189536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7196773-7196868:1:exon

COA6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: cytochrome c oxidase assembly factor 6 homolog
translation: MAAPTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGDFQPSKMTAKS
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7189393..7189536,7196773..7196868)
location: region:7189393-7196868:1
so has part: feature:7189393-7189536:1:exon
so has part: feature:7196773-7196868:1:exon

NP_001193572.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7189393-7189536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7196773-7196868:1:exon

COA6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: cytochrome c oxidase assembly factor 6 homolog
translation: MAAPTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGDFQPSKMTAKS
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7189393..7189536,7196773..7196868)
location: region:7189393-7196868:1
so has part: feature:7189393-7189536:1:exon
so has part: feature:7196773-7196868:1:exon

NP_001193573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7189393-7189536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7196773-7196868:1:exon

COA6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
alternative label: C28H1orf31
gene: COA6
gene synonym: C28H1orf31
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cytochrome c oxidase assembly factor 6 homolog isoform X2
translation: MAAPTMKERQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEKFEAGDFQPSKMTAKS
SIO_010081: COA6
subclass of: SO_0000673
so part of: COA6
location: join(7189393..7189536,7196773..7196868)
location: region:7189393-7196868:1
so has part: feature:7189393-7189536:1:exon
so has part: feature:7196773-7196868:1:exon

XP_010818737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7189393-7189536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7196773-7196868:1:exon

LOC112444768
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444768
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7191743..7192201)
location: region:7191743-7192201:-1
so has part: feature:7191743-7192201:-1:exon
subclass of: SO_0000011

112444768
type: Gene
SIO_000068: ncbigene

position:7191743:-1
position: 7191743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7192201:-1
position: 7192201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7191743-7192201:-1:exon

LOC112444768
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC112444768
product: uncharacterized LOC112444768
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XR_003033124.1
SIO_010081: LOC112444768
subclass of: SO_0000673
so part of: LOC112444768
location: complement(join(7191743..7192047,7192146..7192201))
location: region:7191743-7192201:-1
so has part: feature:7192146-7192201:-1:exon
so has part: feature:7191743-7192047:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7192146-7192201:-1:exon

position:7192146:-1
position: 7192146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7191743-7192047:-1:exon

position:7192047:-1
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TARBP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TARBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7200684..7269377)
location: region:7200684-7269377:-1
so has part: feature:7200684-7269377:-1:exon
subclass of: SO_0000010

535018
type: Gene
SIO_000068: ncbigene

position:7200684:-1
position: 7200684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7269377:-1
position: 7269377
reference: sequence
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type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7200684-7269377:-1:exon

TARBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TARBP1
product: TAR (HIV-1) RNA binding protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 ESTs, 11 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 170 samples with support for all annotated introns
transcript id: XM_024986915.1
SIO_010081: TARBP1
subclass of: SO_0000673
so part of: TARBP1
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position:7269374:-1
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urn:…
SIO_000300: 1
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urn:…
SIO_000300: 2
SIO_000628: feature:7266309-7266406:-1:exon

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urn:…
SIO_000300: 3
SIO_000628: feature:7263853-7263922:-1:exon

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urn:…
SIO_000300: 4
SIO_000628: feature:7261583-7261731:-1:exon

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urn:…
SIO_000300: 5
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urn:…
SIO_000300: 6
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urn:…
SIO_000300: 7
SIO_000628: feature:7255413-7255548:-1:exon

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urn:…
SIO_000300: 8
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urn:…
SIO_000300: 9
SIO_000628: feature:7252022-7252111:-1:exon

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urn:…
SIO_000300: 10
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urn:…
SIO_000300: 11
SIO_000628: feature:7242658-7242757:-1:exon

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urn:…
SIO_000300: 12
SIO_000628: feature:7241604-7241776:-1:exon

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SIO_000300: 13
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urn:…
SIO_000300: 14
SIO_000628: feature:7226577-7226738:-1:exon

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urn:…
SIO_000300: 15
SIO_000628: feature:7222171-7222355:-1:exon

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urn:…
SIO_000300: 16
SIO_000628: feature:7221209-7221470:-1:exon

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position:7221470:-1
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urn:…
SIO_000300: 17
SIO_000628: feature:7220914-7221102:-1:exon

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urn:…
SIO_000300: 18
SIO_000628: feature:7219378-7219559:-1:exon

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urn:…
SIO_000300: 19
SIO_000628: feature:7218841-7218912:-1:exon

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urn:…
SIO_000300: 20
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SIO_000300: 21
SIO_000628: feature:7216593-7216703:-1:exon

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SIO_000300: 22
SIO_000628: feature:7215765-7215914:-1:exon

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SIO_000300: 23
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SIO_000300: 24
SIO_000628: feature:7210955-7211151:-1:exon

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urn:…
SIO_000300: 25
SIO_000628: feature:7209347-7209428:-1:exon

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urn:…
SIO_000300: 26
SIO_000628: feature:7207197-7207368:-1:exon

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urn:…
SIO_000300: 27
SIO_000628: feature:7202307-7202498:-1:exon

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urn:…
SIO_000300: 28
SIO_000628: feature:7201998-7202122:-1:exon

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urn:…
SIO_000300: 29
SIO_000628: feature:7201441-7201577:-1:exon

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urn:…
SIO_000300: 30
SIO_000628: feature:7200684-7201093:-1:exon

position:7201093:-1
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reference: sequence
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TARBP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: TARBP1
product: TAR (HIV-1) RNA binding protein 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 ESTs, 6 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 130 samples with support for all annotated introns
transcript id: XR_003033122.1
SIO_010081: TARBP1
so part of: TARBP1
location: complement(join(7200729..7201093,7201441..7201577,7201998..7202122,7202307..7202498,7207197..7207368,7209039..7209136,7209347..7209428,7210955..7211151,7213876..7213962,7215765..7215914,7216593..7216703,7217440..7217560,7218841..7218912,7219378..7219559,7220914..7221102,7221209..7221470,7222171..7222355,7226577..7226738,7230131..7230228,7241604..7241776,7242658..7242757,7250677..7250818,7252022..7252111,7254689..7254785,7255413..7255548,7258491..7258588,7260483..7260535,7261583..7261731,7263853..7263922,7266309..7266406,7268381..7269377))
location: region:7200729-7269377:-1
so has part: feature:7268381-7269377:-1:exon
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so has part: feature:7210955-7211151:-1:exon
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so has part: feature:7201998-7202122:-1:exon
so has part: feature:7201441-7201577:-1:exon
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reference: sequence
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urn:…
SIO_000300: 1
SIO_000628: feature:7268381-7269377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7266309-7266406:-1:exon

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SIO_000300: 4
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SIO_000628: feature:7252022-7252111:-1:exon

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SIO_000628: feature:7216593-7216703:-1:exon

urn:…
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SIO_000628: feature:7215765-7215914:-1:exon

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SIO_000628: feature:7213876-7213962:-1:exon

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SIO_000628: feature:7210955-7211151:-1:exon

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SIO_000628: feature:7209347-7209428:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:7209039-7209136:-1:exon

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urn:…
SIO_000300: 27
SIO_000628: feature:7207197-7207368:-1:exon

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SIO_000628: feature:7202307-7202498:-1:exon

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SIO_000628: feature:7201998-7202122:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:7201441-7201577:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:7200729-7201093:-1:exon

TARBP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9913
gene: TARBP1
product: TAR (HIV-1) RNA binding protein 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 ESTs, 6 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_003033123.1
SIO_010081: TARBP1
so part of: TARBP1
location: complement(join(7200729..7201093,7201441..7201577,7201998..7202122,7202307..7202498,7207197..7207368,7208368..7208459,7209039..7209136,7209347..7209428,7210955..7211151,7213876..7213962,7215765..7215914,7216593..7216703,7217440..7217560,7218841..7218912,7219378..7219559,7220914..7221102,7221209..7221470,7222171..7222355,7226577..7226738,7230131..7230228,7241604..7241776,7242658..7242757,7250677..7250818,7252022..7252111,7254689..7254785,7255413..7255548,7258491..7258588,7260483..7260535,7261583..7261731,7263853..7263922,7266309..7266406,7268381..7269377))
location: region:7200729-7269377:-1
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urn:…
SIO_000300: 1
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SIO_000300: 6
SIO_000628: feature:7258491-7258588:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7255413-7255548:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7254689-7254785:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7252022-7252111:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7250677-7250818:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7242658-7242757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7241604-7241776:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7230131-7230228:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7226577-7226738:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7222171-7222355:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7221209-7221470:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7220914-7221102:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7219378-7219559:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:7218841-7218912:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:7217440-7217560:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:7216593-7216703:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:7215765-7215914:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:7213876-7213962:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:7210955-7211151:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:7209347-7209428:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:7209039-7209136:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:7208368-7208459:-1:exon

position:7208368:-1
position: 7208368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7208459:-1
position: 7208459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:7207197-7207368:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:7202307-7202498:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:7201998-7202122:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:7201441-7201577:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:7200729-7201093:-1:exon

TARBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TARBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable methyltransferase TARBP1 isoform X1
translation: MEWVLADALLSQSRDPRVLLGALCRGEASAERVETLCFLLQRLEDEEARGGGGGAGALPEAAREVAAGYLVPLLRGLRGCPAGGADDPGPAARQRRRVLRAAGAALRSCARLAGGPQLAAALAEEALCDLLNAGPAPGLEGAAEAAVEVLVAVGSCLRPREDAPLLERVARAALALALGGDKAGPSPDAAALVAGRLLPALGRCGGAALRAVWGGLVAPGVSEGPGRVGSQLLILSALAEKLLPEPGADSVPASREAGLDARRCWRFWSTVQAGLAWSEDALTRKRARYLLQRAVEVSAELGTDCACAPGEGTGPSLFWWSEKKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNGLFEYAVSEENGCWLFHPSWHLCIYKRMFESENKILTKEGVTHFLELYETRILPFSPEISEFIIGPLMDALSESSLYSRSPGQLIGSVSPLGLKLQKFLVTYISFLPEEIKSSFLLKFIQKMTSRHWCAVPILFLSKALANVPRCKALGMEGLLALRDVLQCTMITHQILLRGAAQCYLLQTAMNLVDVEKVSLSDISTFLMSVRQEESLGRGTSLWMELCDWLRINESYFKQSSSCSSTGLHETSSLNAYVRNLVQEYIRSSAWEGGENSCMPDWFEAKLVALMVLLAIDVERMKSQYSEKRRTQNVLRIFLDPLLDALVKFGTNAYMPLLKTDRCLQLLLKLLHTCLLKGSGTQDDEVFTLLQNFIMSTTESISEFILRRLTMNELSTVSDLDRCHLYLMVLTELINLHLNVGWKRGNPIWKVISPLKNASIRHLQEMDRGQEPTLGRQIQRAVSMAALAMVCEVSQKPELQLDSLDVGPPETFISSLQLNQTLQKPHTEEESSFFEESSSSQGWGKIAAQYIHDQWVCLSFLLRKCHTLIPASEGEILEPTLPAVPMAVRTLQSALEALTVLPSEQVLPVFHCMKILVPKLLTTSESLCIESFDMAWKIIASLSNTQLIFWSNFKAFVQFVFDPKVLTIAAKIKGQAYFKIKEVMYRIIEMSAIKTGVFNILISYCCRSWVVSASNVSLSIAKNYSELVLEACIFGTVFRRDQRLIQDVQTFIENLGHECAANVVIENTKREDHYVRICAVKFLCLLDGSNMSHKLFMEDLAIKLLDKDELVSKSRTRYYVNSQQHRVKNRIWQILLVLFPKFDQNFLNKIIDKIFQAGFINNQASIKYFIEWIIILILHKFPQFLPKFWNCFSYGEENLKTSICTFLSVLSHLDVITETILEKKLILKQALTIVLQWCFNHNFSIRLYALVALKKIWSMCKGLHIEELAALTSVIESSLSQVENMHGAGSAKKNWQRIQEHFFFTAFHPLKDYCLETIFYTLPRLSGLTEDEWIAIGKFTRFTDIPLGAGFQWYLSTTHLCELKPGDWSQQDAGSNSGEADNQSEWTDVQKKIIPWKNHVPDFDLELVFQDRAAKLGKSISRLIVVASLIDKPTNLGGLCRTCEVFGAAALVMGSLQCVRDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKAEGYTIVGVEQTAKSLDLTRYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQLLKQGVSTA
SIO_010081: TARBP1
subclass of: SO_0000673
so part of: TARBP1
location: complement(join(7200925..7201093,7201441..7201577,7201998..7202122,7202307..7202498,7207197..7207368,7209347..7209428,7210955..7211151,7213876..7213962,7215765..7215914,7216593..7216703,7217440..7217560,7218841..7218912,7219378..7219559,7220914..7221102,7221209..7221470,7222171..7222355,7226577..7226738,7230131..7230228,7241604..7241776,7242658..7242757,7250677..7250818,7252022..7252111,7254689..7254785,7255413..7255548,7258491..7258588,7260483..7260535,7261583..7261731,7263853..7263922,7266309..7266406,7268381..7269320))
location: region:7200925-7269320:-1
so has part: feature:7268381-7269320:-1:exon
so has part: feature:7266309-7266406:-1:exon
so has part: feature:7263853-7263922:-1:exon
so has part: feature:7261583-7261731:-1:exon
so has part: feature:7260483-7260535:-1:exon
so has part: feature:7258491-7258588:-1:exon
so has part: feature:7255413-7255548:-1:exon
so has part: feature:7254689-7254785:-1:exon
so has part: feature:7252022-7252111:-1:exon
so has part: feature:7250677-7250818:-1:exon
so has part: feature:7242658-7242757:-1:exon
so has part: feature:7241604-7241776:-1:exon
so has part: feature:7230131-7230228:-1:exon
so has part: feature:7226577-7226738:-1:exon
so has part: feature:7222171-7222355:-1:exon
so has part: feature:7221209-7221470:-1:exon
so has part: feature:7220914-7221102:-1:exon
so has part: feature:7219378-7219559:-1:exon
so has part: feature:7218841-7218912:-1:exon
so has part: feature:7217440-7217560:-1:exon
so has part: feature:7216593-7216703:-1:exon
so has part: feature:7215765-7215914:-1:exon
so has part: feature:7213876-7213962:-1:exon
so has part: feature:7210955-7211151:-1:exon
so has part: feature:7209347-7209428:-1:exon
so has part: feature:7207197-7207368:-1:exon
so has part: feature:7202307-7202498:-1:exon
so has part: feature:7201998-7202122:-1:exon
so has part: feature:7201441-7201577:-1:exon
so has part: feature:7200925-7201093:-1:exon

XP_024842683.1
type: Protein
SIO_000068: ncbiprotein

position:7200925:-1
position: 7200925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7269320:-1
position: 7269320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7268381-7269320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7266309-7266406:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7263853-7263922:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7261583-7261731:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7260483-7260535:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7258491-7258588:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7255413-7255548:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7254689-7254785:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7252022-7252111:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7250677-7250818:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7242658-7242757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7241604-7241776:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7230131-7230228:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7226577-7226738:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7222171-7222355:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7221209-7221470:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7220914-7221102:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7219378-7219559:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:7218841-7218912:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:7217440-7217560:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:7216593-7216703:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:7215765-7215914:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:7213876-7213962:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:7210955-7211151:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:7209347-7209428:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:7207197-7207368:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:7202307-7202498:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:7201998-7202122:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:7201441-7201577:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:7200925-7201093:-1:exon

TARBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TARBP1
product: TAR (HIV-1) RNA binding protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 106 samples with support for all annotated introns
transcript id: XM_024986916.1
SIO_010081: TARBP1
subclass of: SO_0000673
so part of: TARBP1
location: complement(join(7202362..7202498,7207197..7207274,7209347..7209428,7210955..7211151,7213876..7213962,7215765..7215914,7216593..7216703,7217440..7217560,7218841..7218912,7219378..7219559,7220914..7221102,7221209..7221470,7222171..7222355,7226577..7226738,7230131..7230228,7241604..7241776,7242658..7242757,7250677..7250818,7252022..7252111,7254689..7254785,7255413..7255548,7258491..7258588,7260483..7260535,7261583..7261731,7263853..7263922,7266309..7266406,7268381..7269377))
location: region:7202362-7269377:-1
so has part: feature:7268381-7269377:-1:exon
so has part: feature:7266309-7266406:-1:exon
so has part: feature:7263853-7263922:-1:exon
so has part: feature:7261583-7261731:-1:exon
so has part: feature:7260483-7260535:-1:exon
so has part: feature:7258491-7258588:-1:exon
so has part: feature:7255413-7255548:-1:exon
so has part: feature:7254689-7254785:-1:exon
so has part: feature:7252022-7252111:-1:exon
so has part: feature:7250677-7250818:-1:exon
so has part: feature:7242658-7242757:-1:exon
so has part: feature:7241604-7241776:-1:exon
so has part: feature:7230131-7230228:-1:exon
so has part: feature:7226577-7226738:-1:exon
so has part: feature:7222171-7222355:-1:exon
so has part: feature:7221209-7221470:-1:exon
so has part: feature:7220914-7221102:-1:exon
so has part: feature:7219378-7219559:-1:exon
so has part: feature:7218841-7218912:-1:exon
so has part: feature:7217440-7217560:-1:exon
so has part: feature:7216593-7216703:-1:exon
so has part: feature:7215765-7215914:-1:exon
so has part: feature:7213876-7213962:-1:exon
so has part: feature:7210955-7211151:-1:exon
so has part: feature:7209347-7209428:-1:exon
so has part: feature:7207197-7207274:-1:exon
so has part: feature:7202362-7202498:-1:exon

position:7202362:-1
position: 7202362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7268381-7269377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7266309-7266406:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7263853-7263922:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7261583-7261731:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7260483-7260535:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7258491-7258588:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7255413-7255548:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7254689-7254785:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7252022-7252111:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7250677-7250818:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7242658-7242757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7241604-7241776:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7230131-7230228:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7226577-7226738:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7222171-7222355:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7221209-7221470:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7220914-7221102:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7219378-7219559:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:7218841-7218912:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:7217440-7217560:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:7216593-7216703:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:7215765-7215914:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:7213876-7213962:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:7210955-7211151:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:7209347-7209428:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:7207197-7207274:-1:exon

position:7207274:-1
position: 7207274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:7202362-7202498:-1:exon

TARBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TARBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable methyltransferase TARBP1 isoform X2
translation: MEWVLADALLSQSRDPRVLLGALCRGEASAERVETLCFLLQRLEDEEARGGGGGAGALPEAAREVAAGYLVPLLRGLRGCPAGGADDPGPAARQRRRVLRAAGAALRSCARLAGGPQLAAALAEEALCDLLNAGPAPGLEGAAEAAVEVLVAVGSCLRPREDAPLLERVARAALALALGGDKAGPSPDAAALVAGRLLPALGRCGGAALRAVWGGLVAPGVSEGPGRVGSQLLILSALAEKLLPEPGADSVPASREAGLDARRCWRFWSTVQAGLAWSEDALTRKRARYLLQRAVEVSAELGTDCACAPGEGTGPSLFWWSEKKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNGLFEYAVSEENGCWLFHPSWHLCIYKRMFESENKILTKEGVTHFLELYETRILPFSPEISEFIIGPLMDALSESSLYSRSPGQLIGSVSPLGLKLQKFLVTYISFLPEEIKSSFLLKFIQKMTSRHWCAVPILFLSKALANVPRCKALGMEGLLALRDVLQCTMITHQILLRGAAQCYLLQTAMNLVDVEKVSLSDISTFLMSVRQEESLGRGTSLWMELCDWLRINESYFKQSSSCSSTGLHETSSLNAYVRNLVQEYIRSSAWEGGENSCMPDWFEAKLVALMVLLAIDVERMKSQYSEKRRTQNVLRIFLDPLLDALVKFGTNAYMPLLKTDRCLQLLLKLLHTCLLKGSGTQDDEVFTLLQNFIMSTTESISEFILRRLTMNELSTVSDLDRCHLYLMVLTELINLHLNVGWKRGNPIWKVISPLKNASIRHLQEMDRGQEPTLGRQIQRAVSMAALAMVCEVSQKPELQLDSLDVGPPETFISSLQLNQTLQKPHTEEESSFFEESSSSQGWGKIAAQYIHDQWVCLSFLLRKCHTLIPASEGEILEPTLPAVPMAVRTLQSALEALTVLPSEQVLPVFHCMKILVPKLLTTSESLCIESFDMAWKIIASLSNTQLIFWSNFKAFVQFVFDPKVLTIAAKIKGQAYFKIKEVMYRIIEMSAIKTGVFNILISYCCRSWVVSASNVSLSIAKNYSELVLEACIFGTVFRRDQRLIQDVQTFIENLGHECAANVVIENTKREDHYVRICAVKFLCLLDGSNMSHKLFMEDLAIKLLDKDELVSKSRTRYYVNSQQHRVKNRIWQILLVLFPKFDQNFLNKIIDKIFQAGFINNQASIKYFIEWIIILILHKFPQFLPKFWNCFSYGEENLKTSICTFLSVLSHLDVITETILEKKLILKQALTIVLQWCFNHNFSIRLYALVALKKIWSMCKGLHIEELAALTSVIESSLSQVENMHGAGSAKKNWQRIQEHFFFTAFHPLKDYCLEVQGFSGTFLQLICVN
SIO_010081: TARBP1
subclass of: SO_0000673
so part of: TARBP1
location: complement(join(7207227..7207274,7209347..7209428,7210955..7211151,7213876..7213962,7215765..7215914,7216593..7216703,7217440..7217560,7218841..7218912,7219378..7219559,7220914..7221102,7221209..7221470,7222171..7222355,7226577..7226738,7230131..7230228,7241604..7241776,7242658..7242757,7250677..7250818,7252022..7252111,7254689..7254785,7255413..7255548,7258491..7258588,7260483..7260535,7261583..7261731,7263853..7263922,7266309..7266406,7268381..7269320))
location: region:7207227-7269320:-1
so has part: feature:7268381-7269320:-1:exon
so has part: feature:7266309-7266406:-1:exon
so has part: feature:7263853-7263922:-1:exon
so has part: feature:7261583-7261731:-1:exon
so has part: feature:7260483-7260535:-1:exon
so has part: feature:7258491-7258588:-1:exon
so has part: feature:7255413-7255548:-1:exon
so has part: feature:7254689-7254785:-1:exon
so has part: feature:7252022-7252111:-1:exon
so has part: feature:7250677-7250818:-1:exon
so has part: feature:7242658-7242757:-1:exon
so has part: feature:7241604-7241776:-1:exon
so has part: feature:7230131-7230228:-1:exon
so has part: feature:7226577-7226738:-1:exon
so has part: feature:7222171-7222355:-1:exon
so has part: feature:7221209-7221470:-1:exon
so has part: feature:7220914-7221102:-1:exon
so has part: feature:7219378-7219559:-1:exon
so has part: feature:7218841-7218912:-1:exon
so has part: feature:7217440-7217560:-1:exon
so has part: feature:7216593-7216703:-1:exon
so has part: feature:7215765-7215914:-1:exon
so has part: feature:7213876-7213962:-1:exon
so has part: feature:7210955-7211151:-1:exon
so has part: feature:7209347-7209428:-1:exon
so has part: feature:7207227-7207274:-1:exon

XP_024842684.1
type: Protein
SIO_000068: ncbiprotein

position:7207227:-1
position: 7207227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7268381-7269320:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7266309-7266406:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7263853-7263922:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7261583-7261731:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7260483-7260535:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7258491-7258588:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7255413-7255548:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7254689-7254785:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7252022-7252111:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7250677-7250818:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:7242658-7242757:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:7241604-7241776:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:7230131-7230228:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:7226577-7226738:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:7222171-7222355:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:7221209-7221470:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:7220914-7221102:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:7219378-7219559:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:7218841-7218912:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:7217440-7217560:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:7216593-7216703:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:7215765-7215914:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:7213876-7213962:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:7210955-7211151:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:7209347-7209428:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:7207227-7207274:-1:exon

IRF2BP2
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: IRF2BP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7398126..7403517)
location: region:7398126-7403517:-1
so has part: feature:7398126-7403517:-1:exon
subclass of: SO_0000010

781665
type: Gene
SIO_000068: ncbigene

position:7398126:-1
position: 7398126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7403517:-1
position: 7403517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7398126-7403517:-1:exon

IRF2BP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: IRF2BP2
product: interferon regulatory factor 2 binding protein 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 167 ESTs, 49 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 369 samples with support for all annotated introns
transcript id: XM_024986931.1
SIO_010081: IRF2BP2
subclass of: SO_0000673
so part of: IRF2BP2
location: complement(join(7398126..7401726,7402384..7403517))
location: region:7398126-7403517:-1
so has part: feature:7402384-7403517:-1:exon
so has part: feature:7398126-7401726:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7402384-7403517:-1:exon

position:7402384:-1
position: 7402384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7398126-7401726:-1:exon

position:7401726:-1
position: 7401726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IRF2BP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: IRF2BP2
product: interferon regulatory factor 2 binding protein 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 175 ESTs, 49 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 373 samples with support for all annotated introns
transcript id: XM_024986930.1
SIO_010081: IRF2BP2
subclass of: SO_0000673
so part of: IRF2BP2
location: complement(join(7398126..7401726,7402336..7403516))
location: region:7398126-7403516:-1
so has part: feature:7402336-7403516:-1:exon
so has part: feature:7398126-7401726:-1:exon

position:7403516:-1
position: 7403516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7402336-7403516:-1:exon

position:7402336:-1
position: 7402336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7398126-7401726:-1:exon

IRF2BP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: IRF2BP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 2-binding protein 2 isoform X2
translation: MAAAVAVAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGRSPPGAAAPAAAKPPPLSAKDLLLQQQQQLGHGGPEAAPRAPQALERYPLAAAAAERPPRLGSDFGGSRPAAALAQPPTPQPPPVNGILVPNGFSKLEEPPELNRQSPNPRRGHAVPPTLVPLMNGSATPLPAALGLGGRAAASLAAVSGAAAAGLGSAQPAEMGAHKRPASVSSSAAAEHEQREAAAKEKQPPAASHRGPADSLSTAAGAAELGSEGAGKGRGPGEQDWVNRPKTVRDTLLALHQHGHSAPFESKFKKEPALTAVARTARKRKPSPEPEGEVGPPKINGEAQPWLSTSTEGLKIPITPTSSFVSPPPPTASPHSNRTTPPEAAQNGQSPMAALILVADNAGGSHASKDANQVHSTTRRNSSSPPSPSSMNQRRLGPREVGGQGAGSAGGLEPVHPASLPDSSLAASAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRQSIKQQGASGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGDVKVKKERDS
SIO_010081: IRF2BP2
subclass of: SO_0000673
so part of: IRF2BP2
location: complement(join(7401011..7401726,7402384..7403386))
location: region:7401011-7403386:-1
so has part: feature:7402384-7403386:-1:exon
so has part: feature:7401011-7401726:-1:exon

XP_024842699.1
type: Protein
SIO_000068: ncbiprotein

position:7401011:-1
position: 7401011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7403386:-1
position: 7403386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7402384-7403386:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7401011-7401726:-1:exon

IRF2BP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: IRF2BP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interferon regulatory factor 2-binding protein 2 isoform X1
translation: MAAAVAVAAASRRQSCYLCDLPRMPWAMIWDFTEPVCRGCVNYEGADRVEFVIETARQLKRAHGCFPEGRSPPGAAAPAAAKPPPLSAKDLLLQQQQQLGHGGPEAAPRAPQALERYPLAAAAAERPPRLGSDFGGSRPAAALAQPPTPQPPPVNGILVPNGFSKLEEPPELNRQSPNPRRGHAVPPTLVPLMNGSATPLPAALGLGGRAAASLAAVSGAAAAGLGSAQPAEMGAHKRPASVSSSAAAEHEQREAAAKEKQPPAASHRGPADSLSTAAGAAELGSEGAGKGRGPGEQDWVNRPKTVRDTLLALHQHGHSAPFESKFKKEPALTAGRLLGFEANGANGSKAVARTARKRKPSPEPEGEVGPPKINGEAQPWLSTSTEGLKIPITPTSSFVSPPPPTASPHSNRTTPPEAAQNGQSPMAALILVADNAGGSHASKDANQVHSTTRRNSSSPPSPSSMNQRRLGPREVGGQGAGSAGGLEPVHPASLPDSSLAASAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRQSIKQQGASGEVYCPSGEKCPLVGSNVPWAFMQGEIATILAGDVKVKKERDS
SIO_010081: IRF2BP2
subclass of: SO_0000673
so part of: IRF2BP2
location: complement(join(7401011..7401726,7402336..7403386))
location: region:7401011-7403386:-1
so has part: feature:7402336-7403386:-1:exon
so has part: feature:7401011-7401726:-1:exon

XP_024842698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7402336-7403386:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7401011-7401726:-1:exon

LOC104976162
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC104976162
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7442816..7445668)
location: region:7442816-7445668:-1
so has part: feature:7442816-7445668:-1:exon
subclass of: SO_0000011

104976162
type: Gene
SIO_000068: ncbigene

position:7442816:-1
position: 7442816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7445668:-1
position: 7445668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7442816-7445668:-1:exon

LOC104976162
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC104976162
product: uncharacterized LOC104976162
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XR_816146.3
SIO_010081: LOC104976162
subclass of: SO_0000673
so part of: LOC104976162
location: complement(join(7442816..7444081,7444628..7444882,7445454..7445668))
location: region:7442816-7445668:-1
so has part: feature:7445454-7445668:-1:exon
so has part: feature:7444628-7444882:-1:exon
so has part: feature:7442816-7444081:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7445454-7445668:-1:exon

position:7445454:-1
position: 7445454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7444628-7444882:-1:exon

position:7444628:-1
position: 7444628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7444882:-1
position: 7444882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7442816-7444081:-1:exon

position:7444081:-1
position: 7444081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC112444804
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444804
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 7533563..7533685
location: region:7533563-7533685:1
so has part: feature:7533563-7533685:1:exon
subclass of: SO_0000578

112444804
type: Gene
SIO_000068: ncbigene

position:7533563:1
position: 7533563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7533685:1
position: 7533685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7533563-7533685:1:exon

LOC112444804
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: snoRNA
gene: LOC112444804
product: small nucleolar RNA SNORA40
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00561
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003033172.1
SIO_010081: LOC112444804
subclass of: SO_0000673
so part of: LOC112444804
location: 7533563..7533685
location: region:7533563-7533685:1
so has part: feature:7533563-7533685:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7533563-7533685:1:exon

LOC104976163
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC104976163
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7694345..7703961)
location: region:7694345-7703961:-1
so has part: feature:7694345-7703961:-1:exon
subclass of: SO_0000011

104976163
type: Gene
SIO_000068: ncbigene

position:7694345:-1
position: 7694345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7703961:-1
position: 7703961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7694345-7703961:-1:exon

LOC104976163
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC104976163
product: uncharacterized LOC104976163
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_816147.3
SIO_010081: LOC104976163
subclass of: SO_0000673
so part of: LOC104976163
location: complement(join(7694345..7696297,7703318..7703363,7703770..7703961))
location: region:7694345-7703961:-1
so has part: feature:7703770-7703961:-1:exon
so has part: feature:7703318-7703363:-1:exon
so has part: feature:7694345-7696297:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7703770-7703961:-1:exon

position:7703770:-1
position: 7703770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7703318-7703363:-1:exon

position:7703318:-1
position: 7703318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7703363:-1
position: 7703363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7694345-7696297:-1:exon

position:7696297:-1
position: 7696297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC112444737
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444737
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7800369..7809807)
location: region:7800369-7809807:-1
so has part: feature:7800369-7809807:-1:exon
subclass of: SO_0000011

112444737
type: Gene
SIO_000068: ncbigene

position:7800369:-1
position: 7800369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7809807:-1
position: 7809807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7800369-7809807:-1:exon

LOC112444737
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: lncRNA
gene: LOC112444737
product: uncharacterized LOC112444737
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_003033084.1
SIO_010081: LOC112444737
subclass of: SO_0000673
so part of: LOC112444737
location: complement(join(7800369..7800766,7806781..7806920,7809587..7809807))
location: region:7800369-7809807:-1
so has part: feature:7809587-7809807:-1:exon
so has part: feature:7806781-7806920:-1:exon
so has part: feature:7800369-7800766:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7809587-7809807:-1:exon

position:7809587:-1
position: 7809587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7806781-7806920:-1:exon

position:7806781:-1
position: 7806781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7806920:-1
position: 7806920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7800369-7800766:-1:exon

position:7800766:-1
position: 7800766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MIR2402
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
alternative label: bta-mir-2402
gene: MIR2402
gene synonym: bta-mir-2402
note: microRNA 2402; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 7836588..7836655
location: region:7836588-7836655:1
so has part: feature:7836588-7836655:1:exon
subclass of: SO_0000571

100313429
type: Gene
SIO_000068: ncbigene

MI0011444
type: miRBase
SIO_000068: mirbase

position:7836588:1
position: 7836588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7836655:1
position: 7836655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7836588-7836655:1:exon

MIR2402
type: Precursor RNA
subclass of: SO_0000185
RO_0002162: 9913
alternative label: bta-mir-2402
gene: MIR2402
gene synonym: bta-mir-2402
product: microRNA 2402
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NR_031306.1
SIO_010081: MIR2402
subclass of: SO_0000673
so part of: MIR2402
location: 7836588..7836655
location: region:7836588-7836655:1
so has part: feature:7836588-7836655:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7836588-7836655:1:exon

MIR2402
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
alternative label: bta-mir-2402
nc RNA class: miRNA
gene: MIR2402
gene synonym: bta-mir-2402
product: bta-miR-2402
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
SIO_010081: MIR2402
subclass of: SO_0000673
so part of: MIR2402
location: 7836630..7836650
location: region:7836630-7836650:1
so has part: feature:7836630-7836650:1:exon

MIMAT0011959
type: miRBase
SIO_000068: mirbase

position:7836630:1
position: 7836630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7836650:1
position: 7836650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7836630-7836650:1:exon

TOMM20
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TOMM20
note: translocase of outer mitochondrial membrane 20; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: complement(7883316..7898012)
location: region:7883316-7898012:-1
so has part: feature:7883316-7898012:-1:exon
subclass of: SO_0000010

781575
type: Gene
SIO_000068: ncbigene

position:7883316:-1
position: 7883316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7898012:-1
position: 7898012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7883316-7898012:-1:exon

TOMM20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: TOMM20
product: translocase of outer mitochondrial membrane 20
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001099183.1
SIO_010081: TOMM20
subclass of: SO_0000673
so part of: TOMM20
location: complement(join(7883316..7884516,7885915..7886057,7889556..7889637,7891743..7891789,7897802..7898012))
location: region:7883316-7898012:-1
so has part: feature:7897802-7898012:-1:exon
so has part: feature:7891743-7891789:-1:exon
so has part: feature:7889556-7889637:-1:exon
so has part: feature:7885915-7886057:-1:exon
so has part: feature:7883316-7884516:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7897802-7898012:-1:exon

position:7897802:-1
position: 7897802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7891743-7891789:-1:exon

position:7891743:-1
position: 7891743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7891789:-1
position: 7891789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7889556-7889637:-1:exon

position:7889556:-1
position: 7889556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7889637:-1
position: 7889637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7885915-7886057:-1:exon

position:7885915:-1
position: 7885915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7886057:-1
position: 7886057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7883316-7884516:-1:exon

position:7884516:-1
position: 7884516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TOMM20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9913
gene: TOMM20
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: mitochondrial import receptor subunit TOM20 homolog
translation: MVGRNSAIAAGVCGALFIGYCIYFDRKRRSDPNFKNRLRERRKKQKLAKERAGLSKLPDLKDAEAVQKFFLEEIQLGEELLAQGEYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQMLLTKLPTISQRIVSAQSLAEDDVE
SIO_010081: TOMM20
subclass of: SO_0000673
so part of: TOMM20
location: complement(join(7884472..7884516,7885915..7886057,7889556..7889637,7891743..7891789,7897802..7897922))
location: region:7884472-7897922:-1
so has part: feature:7897802-7897922:-1:exon
so has part: feature:7891743-7891789:-1:exon
so has part: feature:7889556-7889637:-1:exon
so has part: feature:7885915-7886057:-1:exon
so has part: feature:7884472-7884516:-1:exon

NP_001092653.1
type: Protein
SIO_000068: ncbiprotein

position:7884472:-1
position: 7884472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7897922:-1
position: 7897922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7897802-7897922:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7891743-7891789:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7889556-7889637:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7885915-7886057:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7884472-7884516:-1:exon

LOC112444800
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: LOC112444800
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(7897233..7897367)
location: region:7897233-7897367:-1
so has part: feature:7897233-7897367:-1:exon
subclass of: SO_0000578

112444800
type: Gene
SIO_000068: ncbigene

position:7897233:-1
position: 7897233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7897367:-1
position: 7897367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7897233-7897367:-1:exon

LOC112444800
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9913
nc RNA class: snoRNA
gene: LOC112444800
product: small nucleolar RNA SNORA14
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00397
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_003033168.1
SIO_010081: LOC112444800
subclass of: SO_0000673
so part of: LOC112444800
location: complement(7897233..7897367)
location: region:7897233-7897367:-1
so has part: feature:7897233-7897367:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7897233-7897367:-1:exon

TRNAG-CCC
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: TRNAG-CCC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 7900988..7901060
location: region:7900988-7901060:1
so has part: feature:7900988-7901060:1:exon
subclass of: SO_0000663

112444832
type: Gene
SIO_000068: ncbigene

position:7900988:1
position: 7900988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7901060:1
position: 7901060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7900988-7901060:1:exon

TRNAG-CCC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9913
gene: TRNAG-CCC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glycine (anticodon CCC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:7901021..7901023,aa:Gly,seq:ccc)
SIO_010081: TRNAG-CCC
subclass of: SO_0000673
so part of: TRNAG-CCC
location: 7900988..7901060
location: region:7900988-7901060:1
so has part: feature:7900988-7901060:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7900988-7901060:1:exon

RBM34
type: Gene
subclass of: SO_0000704
RO_0002162: 9913
gene: RBM34
note: RNA binding motif protein 34; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
so part of: sequence
location: complement(7903196..7922576)
location: region:7903196-7922576:-1
so has part: feature:7903196-7922576:-1:exon
subclass of: SO_0000010

537542
type: Gene
SIO_000068: ncbigene

position:7903196:-1
position: 7903196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7922576:-1
position: 7922576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7903196-7922576:-1:exon

RBM34
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9913
gene: RBM34
product: RNA binding motif protein 34, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 25 ESTs, 7 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 239 samples with support for all annotated introns
transcript id: XM_015460936.2
SIO_010081: RBM34
subclass of: SO_0000673
so part of: RBM34
location: complement(join(7903196..7903538,7906372..7906490,7906685..7906724,7908935..7908998,7909144..7909227,7911606..7911649,7915283..7915342,7916873..7917104,7921796..7921932,7922142..7922316,7922425..7922576))
location: region:7903196-7922576:-1
so has part: feature:7922425-7922576:-1:exon
so has part: feature:7922142-7922316:-1:exon
so has part: feature:7921796-7921932:-1:exon
so has part: feature:7916873-7917104:-1:exon
so has part: feature:7915283-7915342:-1:exon
so has part: feature:7911606-7911649:-1:exon
so has part: feature:7909144-7909227:-1:exon
so has part: feature:7908935-7908998:-1:exon
so has part: feature:7906685-7906724:-1:exon
so has part: feature:7906372-7906490:-1:exon
so has part: feature:7903196-7903538:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7922425-7922576:-1:exon

position:7922425:-1
position: 7922425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7922142-7922316:-1:exon

position:7922142:-1
position: 7922142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7922316:-1
position: 7922316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7921796-7921932:-1:exon