Buchnera aphidicola (Schizaphis graminum) isolate LNK plasmid p1.
Buchnera aphidicola (Schizaphis graminum)
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Buchnera.
Genome sequence of Buchnera aphidicola from Schizaphis graminum biotpye I
Submitted (01-MAY-2018) Stored Product Insect and Engineering Research Unit, USDA-ARS Center for Grain and Animal Health Research, 1515 College Avenue, Manhattan, KS 66502, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP029203.1.\nBacteria and source DNA available from Gautam Sarath USDA-ARS 251\nFilley Hall Lincoln, NE 68583.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 22-APR-2018\nAssembly Method :: SPAdes v. 3.9.0\nExpected Final Version :: yes\nGenome Coverage :: 500.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/28/2022 11:17:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 640\nCDSs (total) :: 602\nGenes (coding) :: 579\nCDSs (with protein) :: 579\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 23\nCDSs (without protein) :: 23\nPseudo Genes (ambiguous residues) :: 0 of 23\nPseudo Genes (frameshifted) :: 17 of 23\nPseudo Genes (incomplete) :: 5 of 23\nPseudo Genes (internal stop) :: 7 of 23\nPseudo Genes (multiple problems) :: 6 of 23\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_010890613.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890614.1
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890615.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010890616.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010890617.1
3-isopropylmalate dehydratase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010892291.1
COORDINATES: similar to AA sequence:RefSeq:WP_010892292.1