Camelus dromedarius isolate Drom800 breed African chromosome 36, CamDro3, whole genome shotgun sequence.
type: Entry
definition: Camelus dromedarius isolate Drom800 breed African chromosome 36, CamDro3, whole genome shotgun sequence.
sequence version: NC_044546.1
sequence date: 2019-10-23
sequence: sequence
division: CON
label: NC_044546.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA565028
dblink: SAMN03252735
keyword: WGS
keyword: RefSeq
source: Camelus dromedarius (Arabian camel)
organism: Camelus dromedarius
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Tylopoda; Camelidae; Camelus.
reference: 1
references: 30972949
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM016662.2.\nAssembly name: CamDro3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vetmeduni Vienna on\n2019/10/07. The original whole-genome shotgun project has the\naccession JWIN00000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vetmeduni Vienna\nAssembly Date :: FEB-2019\nAssembly Method :: ABySS v. 1.3.6; HiRise v. MAY-2017;\n PBJelly v. 15.8.24; Pilon v. 1.22; ABySS\n Sealer v. 2.0.2; HiRise v. MAY-2018;\n PBJelly v. 15.8.24; BBMAP-CallVariants v.\n 38.12; ABySS Sealer v. 2.1.0\nAssembly Name :: CamDro3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 65.0x\nSequencing Technology :: Illumina HiSeq; Dovetail Hi-C and\n Chicago; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Camelus dromedarius Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 7066694
topology: linear
so has quality: SO_0000987
location: 1..7066694
location: region:1-7066694:1
RO_0002162: 9838

NC_044546
type: RefSeq
SIO_000068: refseq

PRJNA565028
type: BioProject
SIO_000068: bioproject

SAMN03252735
type: BioSample
SIO_000068: biosample

1
title: Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary
author: Elbers, J.P.
author: Rogers, M.F.
author: Perelman, P.L.
author: Proskuryakova, A.A.
author: Serdyukova, N.A.
author: Johnson, W.E.
author: Horin, P.
author: Corander, J.
author: Murphy, D.
author: Burger, P.A.
journal: Mol Ecol Resour
volume: 19
issue: 4
pages: 1015-1026
year: 2019
pubmed: 30972949

30972949
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7066694:1
position: 7066694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7066694:1:source
so part of: sequence
organism: Camelus dromedarius
mol type: genomic DNA
isolate: Drom800
isolation source: isolated from an animal called Varis
chromosome: 36
sex: female
tissue type: blood
dev stage: adult
country: Austria: Eithental
collection date: 13-Jan-2013
collected by: Pamela Burger
breed: African

9838
type: Taxonomy
SIO_000068: taxonomy

LOC105088897
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088897
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 24373..88250
location: region:24373-88250:1
so has part: feature:24373-88250:1:exon
subclass of: SO_0000010

105088897
type: Gene
SIO_000068: ncbigene

position:24373:1
position: 24373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88250:1
position: 88250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24373-88250:1:exon

LOC105088897
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088897
product: insulin-like growth factor-binding protein 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_031444967.1
SIO_010081: LOC105088897
subclass of: SO_0000673
so part of: LOC105088897
location: join(24373..24452,26619..26846,86998..87116,88108..88250)
location: region:24373-88250:1
so has part: feature:24373-24452:1:exon
so has part: feature:26619-26846:1:exon
so has part: feature:86998-87116:1:exon
so has part: feature:88108-88250:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24373-24452:1:exon

position:24452:1
position: 24452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26619-26846:1:exon

position:26619:1
position: 26619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26846:1
position: 26846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:86998-87116:1:exon

position:86998:1
position: 86998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:87116:1
position: 87116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:88108-88250:1:exon

position:88108:1
position: 88108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088897
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088897
product: insulin-like growth factor-binding protein 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031444968.1
SIO_010081: LOC105088897
subclass of: SO_0000673
so part of: LOC105088897
location: join(24373..24452,26619..26846,86998..87116,87735..88074)
location: region:24373-88074:1
so has part: feature:24373-24452:1:exon
so has part: feature:26619-26846:1:exon
so has part: feature:86998-87116:1:exon
so has part: feature:87735-88074:1:exon

position:88074:1
position: 88074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24373-24452:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26619-26846:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:86998-87116:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:87735-88074:1:exon

position:87735:1
position: 87735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088897
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088897
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: insulin-like growth factor-binding protein 3 isoform X1
translation: MDVIKKGHARDSQRYKVDYESQSTDTQNFSSESKRETEYGACRREMEETLNHLKFLNMLSPRGIHIPNCDKRGFYKKKQCRPSKGRKRGFCWCVDKYGQPLPGSST
SIO_010081: LOC105088897
subclass of: SO_0000673
so part of: LOC105088897
location: join(26729..26846,86998..87116,88108..88191)
location: region:26729-88191:1
so has part: feature:26729-26846:1:exon
so has part: feature:86998-87116:1:exon
so has part: feature:88108-88191:1:exon

XP_031300827.1
type: Protein
SIO_000068: ncbiprotein

position:26729:1
position: 26729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:88191:1
position: 88191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26729-26846:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:86998-87116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:88108-88191:1:exon

LOC105088897
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088897
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: insulin-like growth factor-binding protein 3 isoform X2
translation: MDVIKKGHARDSQRYKVDYESQSTDTQNFSSESKRETEYGACRREMEETLNHLKFLNMLSPRGIHIPNCDKRGFYKKKQALTQPPRPEKLPDTWLGCAPKAPR
SIO_010081: LOC105088897
subclass of: SO_0000673
so part of: LOC105088897
location: join(26729..26846,86998..87116,87735..87809)
location: region:26729-87809:1
so has part: feature:26729-26846:1:exon
so has part: feature:86998-87116:1:exon
so has part: feature:87735-87809:1:exon

XP_031300828.1
type: Protein
SIO_000068: ncbiprotein

position:87809:1
position: 87809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26729-26846:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:86998-87116:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:87735-87809:1:exon

IGFBP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: IGFBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 105811..109828
location: region:105811-109828:1
so has part: feature:105811-109828:1:exon
subclass of: SO_0000010

105088896
type: Gene
SIO_000068: ncbigene

position:105811:1
position: 105811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109828:1
position: 109828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105811-109828:1:exon

IGFBP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IGFBP1
product: insulin like growth factor binding protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_010979864.2
SIO_010081: IGFBP1
subclass of: SO_0000673
so part of: IGFBP1
location: join(105811..106283,107688..107872,108613..108741,109355..109828)
location: region:105811-109828:1
so has part: feature:105811-106283:1:exon
so has part: feature:107688-107872:1:exon
so has part: feature:108613-108741:1:exon
so has part: feature:109355-109828:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:105811-106283:1:exon

position:106283:1
position: 106283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:107688-107872:1:exon

position:107688:1
position: 107688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107872:1
position: 107872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:108613-108741:1:exon

position:108613:1
position: 108613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108741:1
position: 108741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:109355-109828:1:exon

position:109355:1
position: 109355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IGFBP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IGFBP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: insulin-like growth factor-binding protein 1
translation: MPEVPTVRSWPLLVLLSVQLGAVAGAPQPWHCAPCTAERLALCPPVPTSCPEPTRPAGCGCCPLCALPLGSSCGVATARCARGLSCRALPGEPRPLQALTRGQGSCMPAPSTEATDAKNPAAPENVPSESTEMTQEQLLNSFHLMVASSEDLPILWNAISHYESMRALEITDLKKWKEPCQRELYKVLDRLAREQQKAGDKLYKFYLPNCNKNGFYHSKQCETSLEGEPGLCWCVYPWSGKKILGSVAVRGDPRCHQYFNLQN
SIO_010081: IGFBP1
subclass of: SO_0000673
so part of: IGFBP1
location: join(105938..106283,107688..107872,108613..108741,109355..109486)
location: region:105938-109486:1
so has part: feature:105938-106283:1:exon
so has part: feature:107688-107872:1:exon
so has part: feature:108613-108741:1:exon
so has part: feature:109355-109486:1:exon

XP_010978166.2
type: Protein
SIO_000068: ncbiprotein

position:105938:1
position: 105938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:109486:1
position: 109486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:105938-106283:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:107688-107872:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:108613-108741:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:109355-109486:1:exon

IGFBP3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: IGFBP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(117526..130486)
location: region:117526-130486:-1
so has part: feature:117526-130486:-1:exon
subclass of: SO_0000010

116150633
type: Gene
SIO_000068: ncbigene

position:117526:-1
position: 117526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130486:-1
position: 130486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:117526-130486:-1:exon

IGFBP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IGFBP3
product: insulin like growth factor binding protein 3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 8 bases in 7 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 61% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444959.1
SIO_010081: IGFBP3
subclass of: SO_0000673
so part of: IGFBP3
location: complement(join(117526..117652,118627..118752,119246..119467,121600..122078,130439..130486))
location: region:117526-130486:-1
so has part: feature:130439-130486:-1:exon
so has part: feature:121600-122078:-1:exon
so has part: feature:119246-119467:-1:exon
so has part: feature:118627-118752:-1:exon
so has part: feature:117526-117652:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:130439-130486:-1:exon

position:130439:-1
position: 130439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:121600-122078:-1:exon

position:121600:-1
position: 121600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122078:-1
position: 122078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:119246-119467:-1:exon

position:119246:-1
position: 119246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:119467:-1
position: 119467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:118627-118752:-1:exon

position:118627:-1
position: 118627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118752:-1
position: 118752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:117526-117652:-1:exon

position:117652:-1
position: 117652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IGFBP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IGFBP3
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 8 bases in 7 codons; deleted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(119433..119435),aa:OTHER)
product: LOW QUALITY PROTEIN: insulin-like growth factor-binding protein 3
translation: MVDDMPTGAMTIKGQRPRAARCRPVPAAPGRPSSGLPSWLSCSGARPALWAAALTALRCSAGPPHRQLAGARGAGPVCSCYAFNXRALAQFAPPPCLAPCPIFLREPGXGCCLTCALREGSACGVYTERCGXGLRCQPPPGDRAPLQXLLDGPGLCANASAAGRLRAYLLSTPPASGNGSESEEDRAXERGDQALPSTHRVPDSKVHPVHTKMAVIKKAXPRDSQRYKVDYESQSTDTQNFSSESKRETEYGPCRREMEETLNHLKFLNMLSPXGIHIPNCDKRASLQRNGEQLPPFQGQNRGFCWCVDKYGQPLPGFDVKGXGDVHCYGGVESK
SIO_010081: IGFBP3
subclass of: SO_0000673
so part of: IGFBP3
location: complement(join(117526..117652,118627..118752,119246..119467,121600..122078,130439..130486))
location: region:117526-130486:-1
so has part: feature:130439-130486:-1:exon
so has part: feature:121600-122078:-1:exon
so has part: feature:119246-119467:-1:exon
so has part: feature:118627-118752:-1:exon
so has part: feature:117526-117652:-1:exon

XP_031300819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:130439-130486:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:121600-122078:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:119246-119467:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:118627-118752:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:117526-117652:-1:exon

LOC116150642
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150642
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 226892..247320
location: region:226892-247320:1
so has part: feature:226892-247320:1:exon
subclass of: SO_0000011

116150642
type: Gene
SIO_000068: ncbigene

position:226892:1
position: 226892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247320:1
position: 247320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226892-247320:1:exon

LOC116150642
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150642
product: uncharacterized LOC116150642
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_004134345.1
SIO_010081: LOC116150642
subclass of: SO_0000673
so part of: LOC116150642
location: join(226892..227435,244557..247320)
location: region:226892-247320:1
so has part: feature:226892-227435:1:exon
so has part: feature:244557-247320:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:226892-227435:1:exon

position:227435:1
position: 227435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:244557-247320:1:exon

position:244557:1
position: 244557
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150629
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150629
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(316528..320495)
location: region:316528-320495:-1
so has part: feature:316528-320495:-1:exon
subclass of: SO_0000011

116150629
type: Gene
SIO_000068: ncbigene

position:316528:-1
position: 316528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320495:-1
position: 320495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316528-320495:-1:exon

LOC116150629
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150629
product: uncharacterized LOC116150629
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004134341.1
SIO_010081: LOC116150629
subclass of: SO_0000673
so part of: LOC116150629
location: complement(join(316528..318316,319549..319820,320147..320495))
location: region:316528-320495:-1
so has part: feature:320147-320495:-1:exon
so has part: feature:319549-319820:-1:exon
so has part: feature:316528-318316:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:320147-320495:-1:exon

position:320147:-1
position: 320147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:319549-319820:-1:exon

position:319549:-1
position: 319549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:319820:-1
position: 319820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:316528-318316:-1:exon

position:318316:-1
position: 318316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150644
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150644
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 331732..339299
location: region:331732-339299:1
so has part: feature:331732-339299:1:exon
subclass of: SO_0000011

116150644
type: Gene
SIO_000068: ncbigene

position:331732:1
position: 331732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339299:1
position: 339299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:331732-339299:1:exon

LOC116150644
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150644
product: uncharacterized LOC116150644, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004134347.1
SIO_010081: LOC116150644
subclass of: SO_0000673
so part of: LOC116150644
location: join(331732..337269,337437..337553,338282..338342,338778..339299)
location: region:331732-339299:1
so has part: feature:331732-337269:1:exon
so has part: feature:337437-337553:1:exon
so has part: feature:338282-338342:1:exon
so has part: feature:338778-339299:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:331732-337269:1:exon

position:337269:1
position: 337269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:337437-337553:1:exon

position:337437:1
position: 337437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337553:1
position: 337553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:338282-338342:1:exon

position:338282:1
position: 338282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:338342:1
position: 338342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:338778-339299:1:exon

position:338778:1
position: 338778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150644
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150644
product: uncharacterized LOC116150644, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_004134346.1
SIO_010081: LOC116150644
subclass of: SO_0000673
so part of: LOC116150644
location: join(337295..337553,338282..338342,338778..339299)
location: region:337295-339299:1
so has part: feature:337295-337553:1:exon
so has part: feature:338282-338342:1:exon
so has part: feature:338778-339299:1:exon

position:337295:1
position: 337295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:337295-337553:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:338282-338342:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:338778-339299:1:exon

LOC116150645
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150645
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(343874..352977)
location: region:343874-352977:-1
so has part: feature:343874-352977:-1:exon
subclass of: SO_0000011

116150645
type: Gene
SIO_000068: ncbigene

position:343874:-1
position: 343874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:352977:-1
position: 352977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343874-352977:-1:exon

LOC116150645
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150645
product: uncharacterized LOC116150645
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004134348.1
SIO_010081: LOC116150645
subclass of: SO_0000673
so part of: LOC116150645
location: complement(join(343874..345213,345302..345688,346327..352977))
location: region:343874-352977:-1
so has part: feature:346327-352977:-1:exon
so has part: feature:345302-345688:-1:exon
so has part: feature:343874-345213:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:346327-352977:-1:exon

position:346327:-1
position: 346327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:345302-345688:-1:exon

position:345302:-1
position: 345302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:345688:-1
position: 345688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:343874-345213:-1:exon

position:345213:-1
position: 345213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150669
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150669
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(366409..366599)
location: region:366409-366599:-1
so has part: feature:366409-366599:-1:exon
subclass of: SO_0000623

116150669
type: Gene
SIO_000068: ncbigene

position:366409:-1
position: 366409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:366599:-1
position: 366599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:366409-366599:-1:exon

LOC116150669
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116150669
product: U2 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004134397.1
SIO_010081: LOC116150669
subclass of: SO_0000673
so part of: LOC116150669
location: complement(366409..366599)
location: region:366409-366599:-1
so has part: feature:366409-366599:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:366409-366599:-1:exon

LOC116150646
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150646
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(394821..398746)
location: region:394821-398746:-1
so has part: feature:394821-398746:-1:exon
subclass of: SO_0000011

116150646
type: Gene
SIO_000068: ncbigene

position:394821:-1
position: 394821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:398746:-1
position: 398746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:394821-398746:-1:exon

LOC116150646
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150646
product: uncharacterized LOC116150646
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004134349.1
SIO_010081: LOC116150646
subclass of: SO_0000673
so part of: LOC116150646
location: complement(join(394821..396020,396122..397005,397384..397544,398645..398746))
location: region:394821-398746:-1
so has part: feature:398645-398746:-1:exon
so has part: feature:397384-397544:-1:exon
so has part: feature:396122-397005:-1:exon
so has part: feature:394821-396020:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:398645-398746:-1:exon

position:398645:-1
position: 398645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:397384-397544:-1:exon

position:397384:-1
position: 397384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:397544:-1
position: 397544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:396122-397005:-1:exon

position:396122:-1
position: 396122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:397005:-1
position: 397005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:394821-396020:-1:exon

position:396020:-1
position: 396020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105088898
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088898
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 430887..433938
location: region:430887-433938:1
so has part: feature:430887-433938:1:exon

105088898
type: Gene
SIO_000068: ncbigene

position:430887:1
position: 430887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:433938:1
position: 433938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430887-433938:1:exon

LOC105088898
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: LOC105088898
product: uncharacterized LOC105088898
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_004134350.1
SIO_010081: LOC105088898
so part of: LOC105088898
location: join(430887..430922,432343..432525,433724..433938)
location: region:430887-433938:1
so has part: feature:430887-430922:1:exon
so has part: feature:432343-432525:1:exon
so has part: feature:433724-433938:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:430887-430922:1:exon

position:430922:1
position: 430922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:432343-432525:1:exon

position:432343:1
position: 432343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:432525:1
position: 432525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:433724-433938:1:exon

position:433724:1
position: 433724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150634
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150634
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 468855..470689
location: region:468855-470689:1
so has part: feature:468855-470689:1:exon

116150634
type: Gene
SIO_000068: ncbigene

position:468855:1
position: 468855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:470689:1
position: 470689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468855-470689:1:exon

LOC116150634
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150634
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 79% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC116150634
subclass of: SO_0000673
so part of: LOC116150634
location: 468855..469067
location: region:468855-469067:1
so has part: feature:468855-469067:1:exon

position:469067:1
position: 469067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468855-469067:1:exon

LOC116150634
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150634
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 79% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC116150634
subclass of: SO_0000673
so part of: LOC116150634
location: 470480..470548
location: region:470480-470548:1
so has part: feature:470480-470548:1:exon

position:470480:1
position: 470480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:470548:1
position: 470548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470480-470548:1:exon

LOC116150634
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150634
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 79% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC116150634
subclass of: SO_0000673
so part of: LOC116150634
location: 470632..470689
location: region:470632-470689:1
so has part: feature:470632-470689:1:exon

position:470632:1
position: 470632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:470632-470689:1:exon

LOC116150647
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150647
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 471472..472565
location: region:471472-472565:1
so has part: feature:471472-472565:1:exon
subclass of: SO_0000011

116150647
type: Gene
SIO_000068: ncbigene

position:471472:1
position: 471472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:472565:1
position: 472565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:471472-472565:1:exon

LOC116150647
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150647
product: uncharacterized LOC116150647
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004134352.1
SIO_010081: LOC116150647
subclass of: SO_0000673
so part of: LOC116150647
location: join(471472..471582,471851..472565)
location: region:471472-472565:1
so has part: feature:471472-471582:1:exon
so has part: feature:471851-472565:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:471472-471582:1:exon

position:471582:1
position: 471582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:471851-472565:1:exon

position:471851:1
position: 471851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150650
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150650
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(552797..556749)
location: region:552797-556749:-1
so has part: feature:552797-556749:-1:exon
subclass of: SO_0000011

116150650
type: Gene
SIO_000068: ncbigene

position:552797:-1
position: 552797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:556749:-1
position: 556749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:552797-556749:-1:exon

LOC116150650
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150650
product: uncharacterized LOC116150650
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XR_004134354.1
SIO_010081: LOC116150650
subclass of: SO_0000673
so part of: LOC116150650
location: complement(join(552797..554713,555917..556749))
location: region:552797-556749:-1
so has part: feature:555917-556749:-1:exon
so has part: feature:552797-554713:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:555917-556749:-1:exon

position:555917:-1
position: 555917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:552797-554713:-1:exon

position:554713:-1
position: 554713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150648
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 960172..1048693
location: region:960172-1048693:1
so has part: feature:960172-1048693:1:exon
subclass of: SO_0000010

116150648
type: Gene
SIO_000068: ncbigene

position:960172:1
position: 960172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1048693:1
position: 1048693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:960172-1048693:1:exon

LOC116150648
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150648
product: tensin-3-like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_031444972.1
SIO_010081: LOC116150648
subclass of: SO_0000673
so part of: LOC116150648
location: join(960172..960466,1045955..1048693)
location: region:960172-1048693:1
so has part: feature:960172-960466:1:exon
so has part: feature:1045955-1048693:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:960172-960466:1:exon

position:960466:1
position: 960466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1045955-1048693:1:exon

position:1045955:1
position: 1045955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150648
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150648
product: tensin-3-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031444971.1
SIO_010081: LOC116150648
subclass of: SO_0000673
so part of: LOC116150648
location: join(1025995..1026058,1026510..1028211,1045955..1048693)
location: region:1025995-1048693:1
so has part: feature:1025995-1026058:1:exon
so has part: feature:1026510-1028211:1:exon
so has part: feature:1045955-1048693:1:exon

position:1025995:1
position: 1025995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1025995-1026058:1:exon

position:1026058:1
position: 1026058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1026510-1028211:1:exon

position:1026510:1
position: 1026510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1028211:1
position: 1028211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1045955-1048693:1:exon

LOC116150648
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150648
product: tensin-3-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_031444970.1
SIO_010081: LOC116150648
subclass of: SO_0000673
so part of: LOC116150648
location: join(1026261..1028211,1045955..1048693)
location: region:1026261-1048693:1
so has part: feature:1026261-1028211:1:exon
so has part: feature:1045955-1048693:1:exon

position:1026261:1
position: 1026261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1026261-1028211:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1045955-1048693:1:exon

LOC116150648
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3-like isoform X1
translation: MGCQAGWKEVLHMQGPVDGSLYAKVRKKSSSDPGVPGGPPAVPATSSPDHSDHTLSISSDSGHSMASGRTDRTEEHPGPGPKRGLSPQEKAELDQLLSGFGLEDPGSPLQDMSDGHSKCGGTHHMVPAQVHVNGDAAPKDWEMDILDDEMPGHDLCSVESTGTLSSSEGHASAHLGPFACHQSCQNSLLSDGFGSNTGKDQHGAPAPDLGLGGDPLYEREWAFGGRKPRPPQPMLRKPHAPALMQAYGQSGYSTQTWVRQQQMVDAHQYGFAPDGEARLGGRSPAQTQPRVPVTPTQGASSRVAIQRGVGPGPHPTDTQRPPPGRAAFKPRAPDVSVVNGAVPELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMSVPGSPANGPVPPDGVGGGLQASSHLQDIGGGPGRGPVRQGELAFHGRCAGQRLGLQDAWLLTASGAWACWGRGRTAPTGCGRFSEPGLGRLFLGQQPTSQRKRVSGAVTEGQVQRVGAERCSRNPGHRAVGAVLHGGRGWQAVTPGTWQCGSSARPSCPAGRPGKARVALVDKVTWVRGCMDVGAGTGV
SIO_010081: LOC116150648
subclass of: SO_0000673
so part of: LOC116150648
location: join(1028184..1028211,1045955..1047648)
location: region:1028184-1047648:1
so has part: feature:1028184-1028211:1:exon
so has part: feature:1045955-1047648:1:exon

XP_031300830.1
type: Protein
SIO_000068: ncbiprotein

position:1028184:1
position: 1028184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1047648:1
position: 1047648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1028184-1028211:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1045955-1047648:1:exon

LOC116150648
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3-like isoform X1
translation: MGCQAGWKEVLHMQGPVDGSLYAKVRKKSSSDPGVPGGPPAVPATSSPDHSDHTLSISSDSGHSMASGRTDRTEEHPGPGPKRGLSPQEKAELDQLLSGFGLEDPGSPLQDMSDGHSKCGGTHHMVPAQVHVNGDAAPKDWEMDILDDEMPGHDLCSVESTGTLSSSEGHASAHLGPFACHQSCQNSLLSDGFGSNTGKDQHGAPAPDLGLGGDPLYEREWAFGGRKPRPPQPMLRKPHAPALMQAYGQSGYSTQTWVRQQQMVDAHQYGFAPDGEARLGGRSPAQTQPRVPVTPTQGASSRVAIQRGVGPGPHPTDTQRPPPGRAAFKPRAPDVSVVNGAVPELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMSVPGSPANGPVPPDGVGGGLQASSHLQDIGGGPGRGPVRQGELAFHGRCAGQRLGLQDAWLLTASGAWACWGRGRTAPTGCGRFSEPGLGRLFLGQQPTSQRKRVSGAVTEGQVQRVGAERCSRNPGHRAVGAVLHGGRGWQAVTPGTWQCGSSARPSCPAGRPGKARVALVDKVTWVRGCMDVGAGTGV
SIO_010081: LOC116150648
subclass of: SO_0000673
so part of: LOC116150648
location: join(1028184..1028211,1045955..1047648)
location: region:1028184-1047648:1
so has part: feature:1028184-1028211:1:exon
so has part: feature:1045955-1047648:1:exon

XP_031300831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1028184-1028211:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1045955-1047648:1:exon

LOC116150648
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150648
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3-like isoform X2
translation: MQGPVDGSLYAKVRKKSSSDPGVPGGPPAVPATSSPDHSDHTLSISSDSGHSMASGRTDRTEEHPGPGPKRGLSPQEKAELDQLLSGFGLEDPGSPLQDMSDGHSKCGGTHHMVPAQVHVNGDAAPKDWEMDILDDEMPGHDLCSVESTGTLSSSEGHASAHLGPFACHQSCQNSLLSDGFGSNTGKDQHGAPAPDLGLGGDPLYEREWAFGGRKPRPPQPMLRKPHAPALMQAYGQSGYSTQTWVRQQQMVDAHQYGFAPDGEARLGGRSPAQTQPRVPVTPTQGASSRVAIQRGVGPGPHPTDTQRPPPGRAAFKPRAPDVSVVNGAVPELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMSVPGSPANGPVPPDGVGGGLQASSHLQDIGGGPGRGPVRQGELAFHGRCAGQRLGLQDAWLLTASGAWACWGRGRTAPTGCGRFSEPGLGRLFLGQQPTSQRKRVSGAVTEGQVQRVGAERCSRNPGHRAVGAVLHGGRGWQAVTPGTWQCGSSARPSCPAGRPGKARVALVDKVTWVRGCMDVGAGTGV
SIO_010081: LOC116150648
subclass of: SO_0000673
so part of: LOC116150648
location: 1045963..1047648
location: region:1045963-1047648:1
so has part: feature:1045963-1047648:1:exon

XP_031300832.1
type: Protein
SIO_000068: ncbiprotein

position:1045963:1
position: 1045963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1045963-1047648:1:exon

LOC116150653
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150653
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1060663..1062862)
location: region:1060663-1062862:-1
so has part: feature:1060663-1062862:-1:exon
subclass of: SO_0000011

116150653
type: Gene
SIO_000068: ncbigene

position:1060663:-1
position: 1060663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1062862:-1
position: 1062862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1060663-1062862:-1:exon

LOC116150653
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150653
product: uncharacterized LOC116150653
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004134358.1
SIO_010081: LOC116150653
subclass of: SO_0000673
so part of: LOC116150653
location: complement(join(1060663..1062106,1062191..1062436,1062725..1062862))
location: region:1060663-1062862:-1
so has part: feature:1062725-1062862:-1:exon
so has part: feature:1062191-1062436:-1:exon
so has part: feature:1060663-1062106:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1062725-1062862:-1:exon

position:1062725:-1
position: 1062725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1062191-1062436:-1:exon

position:1062191:-1
position: 1062191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1062436:-1
position: 1062436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1060663-1062106:-1:exon

position:1062106:-1
position: 1062106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150635
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150635
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1064493..1186870
location: region:1064493-1186870:1
so has part: feature:1064493-1186870:1:exon
subclass of: SO_0000010

116150635
type: Gene
SIO_000068: ncbigene

position:1064493:1
position: 1064493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186870:1
position: 1186870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1064493-1186870:1:exon

LOC116150635
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150635
product: tensin-3-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444960.1
SIO_010081: LOC116150635
subclass of: SO_0000673
so part of: LOC116150635
location: join(1064493..1064661,1064855..1064974,1149447..1149618,1150774..1151411,1151953..1152037,1182109..1182240,1185131..1185226,1185525..1185602,1186320..1186870)
location: region:1064493-1186870:1
so has part: feature:1064493-1064661:1:exon
so has part: feature:1064855-1064974:1:exon
so has part: feature:1149447-1149618:1:exon
so has part: feature:1150774-1151411:1:exon
so has part: feature:1151953-1152037:1:exon
so has part: feature:1182109-1182240:1:exon
so has part: feature:1185131-1185226:1:exon
so has part: feature:1185525-1185602:1:exon
so has part: feature:1186320-1186870:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1064493-1064661:1:exon

position:1064661:1
position: 1064661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1064855-1064974:1:exon

position:1064855:1
position: 1064855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1064974:1
position: 1064974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1149447-1149618:1:exon

position:1149447:1
position: 1149447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1149618:1
position: 1149618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1150774-1151411:1:exon

position:1150774:1
position: 1150774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1151411:1
position: 1151411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1151953-1152037:1:exon

position:1151953:1
position: 1151953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1152037:1
position: 1152037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1182109-1182240:1:exon

position:1182109:1
position: 1182109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1182240:1
position: 1182240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1185131-1185226:1:exon

position:1185131:1
position: 1185131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1185226:1
position: 1185226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1185525-1185602:1:exon

position:1185525:1
position: 1185525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1185602:1
position: 1185602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1186320-1186870:1:exon

position:1186320:1
position: 1186320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150635
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:1185205..1185207,aa:OTHER)
product: LOW QUALITY PROTEIN: tensin-3-like
translation: MGDPAAEGPALPSVPGSHSCGTGRPALQSGGASFQKKALLCLSSQGSRGRGKPAYRSSPCLLEGFRAQDFKAEYTVSEVTCPVVTRAPGGSPLQSPEPRGCPEILGHSVGMSQSPAGPTPAVFWADVLTAPSLQRAFMSFCTVSGGSPGQRRESSPPAEHPWVETSPKSSLALLGNGWPAGSLLGSREFPGPGQDGSGWPHFPPAELQTPFHGHQLALMDPPEALGPPSGQAFLSFCSAPGGAGLPPGGDAGALLASSHEASPALGPPRAAVEPADDGFLSHGFLTVVPGHSSHHSPVLQGPGMTLPGQPPLPEKKWASEGDRSFGSASPSSSSFSSPHSGRTMSIPFPNVLPEFSRASEVATPSPDNPGEKQVTXNFVQDTSKFWYKADISREQAITMLKDKEPGAFIVRDSHSFRGAYGLAMKVAMTPPSVLQLNKKAGDLANELVRYFLIECTPKGVRLKGXPNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAESSPQTAANSAMELLKQGAGGSLLRPPHLPVLGTAGLLSSPCIPGGFRWEAALGLGGPGVGAAGPGLRRLIRTKFRGIKVESWVLFVGCGEAGLGDLPLQLQACRCTRDQ
SIO_010081: LOC116150635
subclass of: SO_0000673
so part of: LOC116150635
location: join(1064493..1064661,1064855..1064974,1149447..1149618,1150774..1151411,1151953..1152037,1182109..1182240,1185131..1185226,1185525..1185602,1186320..1186672)
location: region:1064493-1186672:1
so has part: feature:1064493-1064661:1:exon
so has part: feature:1064855-1064974:1:exon
so has part: feature:1149447-1149618:1:exon
so has part: feature:1150774-1151411:1:exon
so has part: feature:1151953-1152037:1:exon
so has part: feature:1182109-1182240:1:exon
so has part: feature:1185131-1185226:1:exon
so has part: feature:1185525-1185602:1:exon
so has part: feature:1186320-1186672:1:exon

XP_031300820.1
type: Protein
SIO_000068: ncbiprotein

position:1186672:1
position: 1186672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1064493-1064661:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1064855-1064974:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1149447-1149618:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1150774-1151411:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1151953-1152037:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1182109-1182240:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1185131-1185226:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1185525-1185602:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1186320-1186672:1:exon

LOC116150651
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150651
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1105225..1111327)
location: region:1105225-1111327:-1
so has part: feature:1105225-1111327:-1:exon
subclass of: SO_0000011

116150651
type: Gene
SIO_000068: ncbigene

position:1105225:-1
position: 1105225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1111327:-1
position: 1111327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1105225-1111327:-1:exon

LOC116150651
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150651
product: uncharacterized LOC116150651
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_004134355.1
SIO_010081: LOC116150651
subclass of: SO_0000673
so part of: LOC116150651
location: complement(join(1105225..1105513,1111202..1111327))
location: region:1105225-1111327:-1
so has part: feature:1111202-1111327:-1:exon
so has part: feature:1105225-1105513:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1111202-1111327:-1:exon

position:1111202:-1
position: 1111202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1105225-1105513:-1:exon

position:1105513:-1
position: 1105513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150652
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150652
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1170474..1174511
location: region:1170474-1174511:1
so has part: feature:1170474-1174511:1:exon
subclass of: SO_0000011

116150652
type: Gene
SIO_000068: ncbigene

position:1170474:1
position: 1170474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1174511:1
position: 1174511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1170474-1174511:1:exon

LOC116150652
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150652
product: uncharacterized LOC116150652, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_004134357.1
SIO_010081: LOC116150652
subclass of: SO_0000673
so part of: LOC116150652
location: join(1170474..1170630,1171166..1171174,1174454..1174491)
location: region:1170474-1174491:1
so has part: feature:1170474-1170630:1:exon
so has part: feature:1171166-1171174:1:exon
so has part: feature:1174454-1174491:1:exon

position:1174491:1
position: 1174491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1170474-1170630:1:exon

position:1170630:1
position: 1170630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171166-1171174:1:exon

position:1171166:1
position: 1171166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1171174:1
position: 1171174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1174454-1174491:1:exon

position:1174454:1
position: 1174454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150652
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150652
product: uncharacterized LOC116150652, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004134356.1
SIO_010081: LOC116150652
subclass of: SO_0000673
so part of: LOC116150652
location: join(1170578..1170630,1171166..1171250,1174454..1174511)
location: region:1170578-1174511:1
so has part: feature:1170578-1170630:1:exon
so has part: feature:1171166-1171250:1:exon
so has part: feature:1174454-1174511:1:exon

position:1170578:1
position: 1170578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1170578-1170630:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1171166-1171250:1:exon

position:1171250:1
position: 1171250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1174454-1174511:1:exon

LOC105101961
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101961
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1196090..1468569)
location: region:1196090-1468569:-1
so has part: feature:1196090-1468569:-1:exon
subclass of: SO_0000010

105101961
type: Gene
SIO_000068: ncbigene

position:1196090:-1
position: 1196090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1468569:-1
position: 1468569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1196090-1468569:-1:exon

LOC105101961
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101961
product: tensin-3
inference: similar to RNA sequence, mRNA (same species):INSD:GAEB01034259.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 276 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444969.1
SIO_010081: LOC105101961
subclass of: SO_0000673
so part of: LOC105101961
location: complement(join(1196090..1196271,1361960..1362037,1362131..1362257,1363067..1363236,1374245..1375486,1400211..1400315,1401417..1401482,1401773..1401902,1409758..1409833,1410875..1410935,1411273..1411385,1416952..1417035,1419657..1419721,1422482..>1422604,<1443973..1444011,1461071..1461108,1464944..1465055,1468189..1468569))
location: region:1196090-1468569:-1
so has part: feature:1468189-1468569:-1:exon
so has part: feature:1464944-1465055:-1:exon
so has part: feature:1461071-1461108:-1:exon
so has part: feature:1443973-1444011:-1:exon
so has part: feature:1422482-1422604:-1:exon
so has part: feature:1419657-1419721:-1:exon
so has part: feature:1416952-1417035:-1:exon
so has part: feature:1411273-1411385:-1:exon
so has part: feature:1410875-1410935:-1:exon
so has part: feature:1409758-1409833:-1:exon
so has part: feature:1401773-1401902:-1:exon
so has part: feature:1401417-1401482:-1:exon
so has part: feature:1400211-1400315:-1:exon
so has part: feature:1374245-1375486:-1:exon
so has part: feature:1363067-1363236:-1:exon
so has part: feature:1362131-1362257:-1:exon
so has part: feature:1361960-1362037:-1:exon
so has part: feature:1196090-1196271:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1468189-1468569:-1:exon

position:1468189:-1
position: 1468189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1464944-1465055:-1:exon

position:1464944:-1
position: 1464944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1465055:-1
position: 1465055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1461071-1461108:-1:exon

position:1461071:-1
position: 1461071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1461108:-1
position: 1461108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1443973-1444011:-1:exon

position:1443973:-1
position: 1443973
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:1444011:-1
position: 1444011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1422482-1422604:-1:exon

position:1422482:-1
position: 1422482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1422604:-1
position: 1422604
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1419657-1419721:-1:exon

position:1419657:-1
position: 1419657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1419721:-1
position: 1419721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1416952-1417035:-1:exon

position:1416952:-1
position: 1416952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1417035:-1
position: 1417035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1411273-1411385:-1:exon

position:1411273:-1
position: 1411273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1411385:-1
position: 1411385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1410875-1410935:-1:exon

position:1410875:-1
position: 1410875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1410935:-1
position: 1410935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1409758-1409833:-1:exon

position:1409758:-1
position: 1409758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1409833:-1
position: 1409833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1401773-1401902:-1:exon

position:1401773:-1
position: 1401773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401902:-1
position: 1401902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1401417-1401482:-1:exon

position:1401417:-1
position: 1401417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401482:-1
position: 1401482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1400211-1400315:-1:exon

position:1400211:-1
position: 1400211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1400315:-1
position: 1400315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1374245-1375486:-1:exon

position:1374245:-1
position: 1374245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1375486:-1
position: 1375486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1363067-1363236:-1:exon

position:1363067:-1
position: 1363067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1363236:-1
position: 1363236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1362131-1362257:-1:exon

position:1362131:-1
position: 1362131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1362257:-1
position: 1362257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1361960-1362037:-1:exon

position:1361960:-1
position: 1361960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1362037:-1
position: 1362037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1196090-1196271:-1:exon

position:1196271:-1
position: 1196271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101961
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101961
inference: similar to RNA sequence, mRNA (same species):INSD:GAEB01034259.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 276 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3
translation: MRLRVRTPGPPGGCARGARARGPRCQPEELTAGPHSFKNKVFKKARVCGVCRQIIEGPGVSCRACKYACHRTCEAKVVSPHCARAHLEQVLRAPSPAASLCCDRPCRPATRSPAMEDGRELDLTYITERIIAVSFPAGCSEESYLHNLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKILDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKVSTLMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDTGGACRPFLKLYQAMQPVYTSGIYNVGPENQGRVCISVEPAQLLKGDVMVKCYHKRYRSATRDVVFRLQFHTGAVQGYGLVFGKEDLDNACKDDRFPDDGKVELVFSATPEKIQGCEHLQNDHGVIVDFNTADPLIRWDSYENLTADGEVLHTQGPVDGSLYAKVRKKSSSDPSVPGGPPAVPAASSPDHSDHTLSVSSDSGHSTASGRTDRTEEHPGPGPKRGLSPQEKAELDQLLSGFGLEDPGSPLQDMSNGRSKCGGTRHVVPAQVHVNGDAAPKDRETDILDDEMPGHDLRSVDSTGTLSSSEGHASAHLGPFACHQSSQNSLLSDGFGSSTGEDQHGAPAPDLGLGGDPLYERERAFGGREPRPLQPVLRKPPAPAPTQAYGQSGYSTQTWVRQQQMVAAHQYGFAPDGEARLGGRSPAQTQPRVPVTPTRGASSRVAVQRGVGPGPHPPDTQRPPPGRAAFKPRAPDVSVVNGAVPELSSDPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMSVPGSPANGPAPPDGVGGGLRASGHLQDVGGGPGRGPARQGDEPPSGRFRKLSVGQYDNDAGGPPAFSKSKCGWGQPTSAEQAPSLVPFLSPASAKETAIPAYPRDLDGVDGRVFSPTGSGNETLPPTPAFPVSPETPYVTTPRYPPFSPPGPPMGGTSLYRGAQEP
SIO_010081: LOC105101961
subclass of: SO_0000673
so part of: LOC105101961
location: complement(join(1196264..1196271,1361960..1362037,1362131..1362257,1363067..1363236,1374245..1375486,1400211..1400315,1401417..1401482,1401773..1401902,1409758..1409833,1410875..1410935,1411273..1411385,1416952..1417035,1419657..1419721,1422482..>1422604,<1443973..1444011,1461071..1461108,1464944..1465055,1468189..1468266))
location: region:1196264-1468266:-1
so has part: feature:1468189-1468266:-1:exon
so has part: feature:1464944-1465055:-1:exon
so has part: feature:1461071-1461108:-1:exon
so has part: feature:1443973-1444011:-1:exon
so has part: feature:1422482-1422604:-1:exon
so has part: feature:1419657-1419721:-1:exon
so has part: feature:1416952-1417035:-1:exon
so has part: feature:1411273-1411385:-1:exon
so has part: feature:1410875-1410935:-1:exon
so has part: feature:1409758-1409833:-1:exon
so has part: feature:1401773-1401902:-1:exon
so has part: feature:1401417-1401482:-1:exon
so has part: feature:1400211-1400315:-1:exon
so has part: feature:1374245-1375486:-1:exon
so has part: feature:1363067-1363236:-1:exon
so has part: feature:1362131-1362257:-1:exon
so has part: feature:1361960-1362037:-1:exon
so has part: feature:1196264-1196271:-1:exon

XP_031300829.1
type: Protein
SIO_000068: ncbiprotein

position:1196264:-1
position: 1196264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1468266:-1
position: 1468266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1468189-1468266:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1464944-1465055:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1461071-1461108:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1443973-1444011:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1422482-1422604:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1419657-1419721:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1416952-1417035:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1411273-1411385:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1410875-1410935:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1409758-1409833:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401773-1401902:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401417-1401482:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1400211-1400315:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1374245-1375486:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1363067-1363236:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1362131-1362257:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1361960-1362037:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1196264-1196271:-1:exon

LOC116150649
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1298455..1397843)
location: region:1298455-1397843:-1
so has part: feature:1298455-1397843:-1:exon
subclass of: SO_0000010

116150649
type: Gene
SIO_000068: ncbigene

position:1298455:-1
position: 1298455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1397843:-1
position: 1397843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1298455-1397843:-1:exon

LOC116150649
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150649
product: tensin-3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_031444973.1
SIO_010081: LOC116150649
subclass of: SO_0000673
so part of: LOC116150649
location: complement(join(1298455..1301521,1397318..1397843))
location: region:1298455-1397843:-1
so has part: feature:1397318-1397843:-1:exon
so has part: feature:1298455-1301521:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1397318-1397843:-1:exon

position:1397318:-1
position: 1397318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1298455-1301521:-1:exon

position:1301521:-1
position: 1301521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150649
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150649
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3-like
translation: MASGRTDRTEEHPGPGPKRCLSPQEKAELDQMLSGFGLEDPGSPLQDMSDGHSKCGETRHVVPAQVHVNGDAAPKDREMDILDDEMPGHDLRSVDSTGTLSSSEGHASTHLGPFTCHQSSQNSLLSDGFGSSAGEDQHGAPAPDLGLGGDPLYEREWAFRGREPRPPQPVLRKPPAPAPTQAYGQSGYSMPTWVRQQQMVAAHQYGFAPDGEARLSGRSPAQTQPRVPVTPTRGASSQVAVQRGVGPGPHPPDTQRPPSRQSGLQAQGSGRQRRERHRPGAECRPLPGLPNPGHRPVHQAAEQADLGAGPHLRAHPHPHERAGQPSQWPRAPRWHGRWTAGQWPPARHWGRPWQGPHETR
SIO_010081: LOC116150649
subclass of: SO_0000673
so part of: LOC116150649
location: complement(1300275..1301357)
location: region:1300275-1301357:-1
so has part: feature:1300275-1301357:-1:exon

XP_031300833.1
type: Protein
SIO_000068: ncbiprotein

position:1300275:-1
position: 1300275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1301357:-1
position: 1301357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1300275-1301357:-1:exon

LOC116147130
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116147130
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1325989..1344749)
location: region:1325989-1344749:-1
so has part: feature:1325989-1344749:-1:exon
subclass of: SO_0000010

116147130
type: Gene
SIO_000068: ncbigene

position:1325989:-1
position: 1325989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1344749:-1
position: 1344749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1325989-1344749:-1:exon

LOC116147130
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116147130
product: tensin-3-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031444975.1
SIO_010081: LOC116147130
subclass of: SO_0000673
so part of: LOC116147130
location: complement(join(1325989..1326207,1326590..1326667,1332250..1332327,1337396..1337491,1340359..1340490,1344198..1344749))
location: region:1325989-1344749:-1
so has part: feature:1344198-1344749:-1:exon
so has part: feature:1340359-1340490:-1:exon
so has part: feature:1337396-1337491:-1:exon
so has part: feature:1332250-1332327:-1:exon
so has part: feature:1326590-1326667:-1:exon
so has part: feature:1325989-1326207:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1344198-1344749:-1:exon

position:1344198:-1
position: 1344198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1340359-1340490:-1:exon

position:1340359:-1
position: 1340359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1340490:-1
position: 1340490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1337396-1337491:-1:exon

position:1337396:-1
position: 1337396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1337491:-1
position: 1337491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1332250-1332327:-1:exon

position:1332250:-1
position: 1332250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1332327:-1
position: 1332327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1326590-1326667:-1:exon

position:1326590:-1
position: 1326590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1326667:-1
position: 1326667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1325989-1326207:-1:exon

position:1326207:-1
position: 1326207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116147130
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116147130
product: tensin-3-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031444974.1
SIO_010081: LOC116147130
subclass of: SO_0000673
so part of: LOC116147130
location: complement(join(1326101..1326207,1326590..1326667,1337020..1337097,1337396..1337491,1340359..1340490,1344198..1344749))
location: region:1326101-1344749:-1
so has part: feature:1344198-1344749:-1:exon
so has part: feature:1340359-1340490:-1:exon
so has part: feature:1337396-1337491:-1:exon
so has part: feature:1337020-1337097:-1:exon
so has part: feature:1326590-1326667:-1:exon
so has part: feature:1326101-1326207:-1:exon

position:1326101:-1
position: 1326101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1344198-1344749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1340359-1340490:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1337396-1337491:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1337020-1337097:-1:exon

position:1337020:-1
position: 1337020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1337097:-1
position: 1337097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1326590-1326667:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1326101-1326207:-1:exon

LOC116147130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116147130
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3-like isoform X2
translation: MLKDKEPRAFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCPNEPYFGSLTDLVCQHSITPLALPCKLLIPDRDPLEETAESSPQTAANSATELLKQGAGSGSQQTWQERTGISHVALPPHVHSLHPSP
SIO_010081: LOC116147130
subclass of: SO_0000673
so part of: LOC116147130
location: complement(join(1326116..1326207,1326590..1326667,1332250..1332327,1337396..1337491,1340359..1340482))
location: region:1326116-1340482:-1
so has part: feature:1340359-1340482:-1:exon
so has part: feature:1337396-1337491:-1:exon
so has part: feature:1332250-1332327:-1:exon
so has part: feature:1326590-1326667:-1:exon
so has part: feature:1326116-1326207:-1:exon

XP_031300835.1
type: Protein
SIO_000068: ncbiprotein

position:1326116:-1
position: 1326116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1340482:-1
position: 1340482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1340359-1340482:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1337396-1337491:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1332250-1332327:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1326590-1326667:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1326116-1326207:-1:exon

LOC116147130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116147130
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tensin-3-like isoform X1
translation: MLKDKEPRAFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCPNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEETAESSPQTAANSATELLKQGAGSGSQQTWQERTGISHVALPPHVHSLHPSP
SIO_010081: LOC116147130
subclass of: SO_0000673
so part of: LOC116147130
location: complement(join(1326116..1326207,1326590..1326667,1337020..1337097,1337396..1337491,1340359..1340482))
location: region:1326116-1340482:-1
so has part: feature:1340359-1340482:-1:exon
so has part: feature:1337396-1337491:-1:exon
so has part: feature:1337020-1337097:-1:exon
so has part: feature:1326590-1326667:-1:exon
so has part: feature:1326116-1326207:-1:exon

XP_031300834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1340359-1340482:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1337396-1337491:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1337020-1337097:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1326590-1326667:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1326116-1326207:-1:exon

LOC116150654
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150654
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1540955..1543986)
location: region:1540955-1543986:-1
so has part: feature:1540955-1543986:-1:exon
subclass of: SO_0000011

116150654
type: Gene
SIO_000068: ncbigene

position:1540955:-1
position: 1540955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1543986:-1
position: 1543986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1540955-1543986:-1:exon

LOC116150654
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150654
product: uncharacterized LOC116150654
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004134359.1
SIO_010081: LOC116150654
subclass of: SO_0000673
so part of: LOC116150654
location: complement(join(1540955..1541083,1541452..1541550,1543782..1543986))
location: region:1540955-1543986:-1
so has part: feature:1543782-1543986:-1:exon
so has part: feature:1541452-1541550:-1:exon
so has part: feature:1540955-1541083:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1543782-1543986:-1:exon

position:1543782:-1
position: 1543782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1541452-1541550:-1:exon

position:1541452:-1
position: 1541452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1541550:-1
position: 1541550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1540955-1541083:-1:exon

position:1541083:-1
position: 1541083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150655
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150655
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1547598..1557228)
location: region:1547598-1557228:-1
so has part: feature:1547598-1557228:-1:exon
subclass of: SO_0000011

116150655
type: Gene
SIO_000068: ncbigene

position:1547598:-1
position: 1547598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1557228:-1
position: 1557228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1547598-1557228:-1:exon

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004134365.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1551667,1551790..1552018,1552362..1552986,1554045..1554294,1555135..1555258,1555981..1556250,1556602..1556766,1557041..1557228))
location: region:1547598-1557228:-1
so has part: feature:1557041-1557228:-1:exon
so has part: feature:1556602-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1555135-1555258:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552362-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1547598-1551667:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1557041-1557228:-1:exon

position:1557041:-1
position: 1557041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1556602-1556766:-1:exon

position:1556602:-1
position: 1556602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1556766:-1
position: 1556766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

position:1555981:-1
position: 1555981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1556250:-1
position: 1556250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1555135-1555258:-1:exon

position:1555135:-1
position: 1555135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1555258:-1
position: 1555258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1554045-1554294:-1:exon

position:1554045:-1
position: 1554045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1554294:-1
position: 1554294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1552362-1552986:-1:exon

position:1552362:-1
position: 1552362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1552986:-1
position: 1552986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1551790-1552018:-1:exon

position:1551790:-1
position: 1551790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1552018:-1
position: 1552018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1547598-1551667:-1:exon

position:1551667:-1
position: 1551667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004134361.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1551667,1551790..1552018,1552382..1552986,1554045..1554294,1554450..1554546,1555135..1555258,1555981..1556250,1556602..1556766,1557041..1557228))
location: region:1547598-1557228:-1
so has part: feature:1557041-1557228:-1:exon
so has part: feature:1556602-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1555135-1555258:-1:exon
so has part: feature:1554450-1554546:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552382-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1547598-1551667:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1557041-1557228:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1556602-1556766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1555135-1555258:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1554450-1554546:-1:exon

position:1554450:-1
position: 1554450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1554546:-1
position: 1554546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1554045-1554294:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1552382-1552986:-1:exon

position:1552382:-1
position: 1552382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1551790-1552018:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1547598-1551667:-1:exon

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134364.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1551667,1551790..1552018,1552382..1552986,1554045..1554294,1555135..1555258,1555981..1556250,1556613..1556766,1557041..1557227))
location: region:1547598-1557227:-1
so has part: feature:1557041-1557227:-1:exon
so has part: feature:1556613-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1555135-1555258:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552382-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1547598-1551667:-1:exon

position:1557227:-1
position: 1557227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1557041-1557227:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1556613-1556766:-1:exon

position:1556613:-1
position: 1556613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1555135-1555258:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1554045-1554294:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1552382-1552986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1551790-1552018:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1547598-1551667:-1:exon

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134362.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1551667,1551790..1552018,1552382..1552986,1554045..1554294,1555135..1555258,1555981..1556250,1556602..1556766,1557024..1557227))
location: region:1547598-1557227:-1
so has part: feature:1557024-1557227:-1:exon
so has part: feature:1556602-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1555135-1555258:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552382-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1547598-1551667:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1557024-1557227:-1:exon

position:1557024:-1
position: 1557024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1556602-1556766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1555135-1555258:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1554045-1554294:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1552382-1552986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1551790-1552018:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1547598-1551667:-1:exon

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134363.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1551667,1551790..1552018,1552382..1552986,1554045..1554294,1555981..1556250,1556602..1556766,1557041..1557226))
location: region:1547598-1557226:-1
so has part: feature:1557041-1557226:-1:exon
so has part: feature:1556602-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552382-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1547598-1551667:-1:exon

position:1557226:-1
position: 1557226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1557041-1557226:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1556602-1556766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1554045-1554294:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1552382-1552986:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1551790-1552018:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1547598-1551667:-1:exon

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134360.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1551667,1551790..1552018,1552382..1552986,1554045..1554294,1555135..1555258,1555981..1556250,1556602..1556766,1557041..1557226))
location: region:1547598-1557226:-1
so has part: feature:1557041-1557226:-1:exon
so has part: feature:1556602-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1555135-1555258:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552382-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1547598-1551667:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1557041-1557226:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1556602-1556766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1555135-1555258:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1554045-1554294:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1552382-1552986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1551790-1552018:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1547598-1551667:-1:exon

LOC116150655
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150655
product: uncharacterized LOC116150655, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004134366.1
SIO_010081: LOC116150655
subclass of: SO_0000673
so part of: LOC116150655
location: complement(join(1547598..1550251,1550368..1551667,1551790..1552018,1552382..1552986,1554045..1554294,1555135..1555258,1555981..1556250,1556602..1556766,1557041..1557225))
location: region:1547598-1557225:-1
so has part: feature:1557041-1557225:-1:exon
so has part: feature:1556602-1556766:-1:exon
so has part: feature:1555981-1556250:-1:exon
so has part: feature:1555135-1555258:-1:exon
so has part: feature:1554045-1554294:-1:exon
so has part: feature:1552382-1552986:-1:exon
so has part: feature:1551790-1552018:-1:exon
so has part: feature:1550368-1551667:-1:exon
so has part: feature:1547598-1550251:-1:exon

position:1557225:-1
position: 1557225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1557041-1557225:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1556602-1556766:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1555981-1556250:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1555135-1555258:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1554045-1554294:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1552382-1552986:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1551790-1552018:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1550368-1551667:-1:exon

position:1550368:-1
position: 1550368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1547598-1550251:-1:exon

position:1550251:-1
position: 1550251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRNAV-GAC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAV-GAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(1575063..1575134)
location: region:1575063-1575134:-1
so has part: feature:1575063-1575134:-1:exon
subclass of: SO_0000663

116150672
type: Gene
SIO_000068: ncbigene

position:1575063:-1
position: 1575063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1575134:-1
position: 1575134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1575063-1575134:-1:exon

TRNAV-GAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAV-GAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA valine (anticodon GAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(1575100..1575102),aa:Val, seq:gac)
SIO_010081: TRNAV-GAC
subclass of: SO_0000673
so part of: TRNAV-GAC
location: complement(1575063..1575134)
location: region:1575063-1575134:-1
so has part: feature:1575063-1575134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1575063-1575134:-1:exon

HUS1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: HUS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1598815..1607004)
location: region:1598815-1607004:-1
so has part: feature:1598815-1607004:-1:exon
subclass of: SO_0000010

105106220
type: Gene
SIO_000068: ncbigene

position:1598815:-1
position: 1598815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1607004:-1
position: 1607004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1598815-1607004:-1:exon

HUS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HUS1
product: HUS1 checkpoint clamp component, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031444976.1
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1598815..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605560,1606849..1607004))
location: region:1598815-1607004:-1
so has part: feature:1606849-1607004:-1:exon
so has part: feature:1605433-1605560:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1598815-1599093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1606849-1607004:-1:exon

position:1606849:-1
position: 1606849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1605433-1605560:-1:exon

position:1605433:-1
position: 1605433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1605560:-1
position: 1605560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1605174-1605350:-1:exon

position:1605174:-1
position: 1605174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1605350:-1
position: 1605350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1603609-1603716:-1:exon

position:1603609:-1
position: 1603609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1603716:-1
position: 1603716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1602715-1602789:-1:exon

position:1602715:-1
position: 1602715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1602789:-1
position: 1602789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1600836-1600935:-1:exon

position:1600836:-1
position: 1600836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1600935:-1
position: 1600935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1599687-1599806:-1:exon

position:1599687:-1
position: 1599687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1599806:-1
position: 1599806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1598815-1599093:-1:exon

position:1599093:-1
position: 1599093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HUS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HUS1
product: HUS1 checkpoint clamp component, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_031444979.1
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1598815..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605560,1605675..1605881,1606849..1606983))
location: region:1598815-1606983:-1
so has part: feature:1606849-1606983:-1:exon
so has part: feature:1605675-1605881:-1:exon
so has part: feature:1605433-1605560:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1598815-1599093:-1:exon

position:1606983:-1
position: 1606983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1606849-1606983:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605675-1605881:-1:exon

position:1605675:-1
position: 1605675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1605881:-1
position: 1605881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1605433-1605560:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1598815-1599093:-1:exon

HUS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HUS1
product: HUS1 checkpoint clamp component, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_031444977.1
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1598815..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605881,1606849..1606983))
location: region:1598815-1606983:-1
so has part: feature:1606849-1606983:-1:exon
so has part: feature:1605433-1605881:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1598815-1599093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1606849-1606983:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605433-1605881:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1598815-1599093:-1:exon

HUS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HUS1
product: HUS1 checkpoint clamp component, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_031444978.1
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1598815..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605900,1606849..1606942))
location: region:1598815-1606942:-1
so has part: feature:1606849-1606942:-1:exon
so has part: feature:1605433-1605900:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1598815-1599093:-1:exon

position:1606942:-1
position: 1606942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1606849-1606942:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605433-1605900:-1:exon

position:1605900:-1
position: 1605900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1598815-1599093:-1:exon

HUS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HUS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: checkpoint protein HUS1 isoform X1
translation: MKFRAKIVDAACLNHFTRVSTMIAKLAKTCTLRISPDKLNFVLSDKVASGGVSMWCELEQANFFSEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKVKLTNKHFPCLTVSIELLSVSSSSRVVTHDIPVKVIPRRLWRDLQEPTVPAADVSIYLPVLKTMKSVVEKMKNISNHLIIEANLNGELNLRIETELVSVTTHFKDLGNPPPASGHASQDHDPERMTEVHVDVRKLLQFLAGQQGNPAKATCNIVSNKMVHFDLLHEDVSLQYFIPALS
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1599011..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605560,1606849..1606900))
location: region:1599011-1606900:-1
so has part: feature:1606849-1606900:-1:exon
so has part: feature:1605433-1605560:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1599011-1599093:-1:exon

XP_031300836.1
type: Protein
SIO_000068: ncbiprotein

position:1599011:-1
position: 1599011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1606900:-1
position: 1606900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1606849-1606900:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605433-1605560:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1599011-1599093:-1:exon

HUS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HUS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: checkpoint protein HUS1 isoform X2
translation: MIAKLAKTCTLRISPDKLNFVLSDKVASGGVSMWCELEQANFFSEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKVKLTNKHFPCLTVSIELLSVSSSSRVVTHDIPVKVIPRRLWRDLQEPTVPAADVSIYLPVLKTMKSVVEKMKNISNHLIIEANLNGELNLRIETELVSVTTHFKDLGNPPPASGHASQDHDPERMTEVHVDVRKLLQFLAGQQGNPAKATCNIVSNKMVHFDLLHEDVSLQYFIPALS
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1599011..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605549))
location: region:1599011-1605549:-1
so has part: feature:1605433-1605549:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1599011-1599093:-1:exon

XP_031300837.1
type: Protein
SIO_000068: ncbiprotein

position:1605549:-1
position: 1605549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1605433-1605549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1599011-1599093:-1:exon

HUS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HUS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: checkpoint protein HUS1 isoform X2
translation: MIAKLAKTCTLRISPDKLNFVLSDKVASGGVSMWCELEQANFFSEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKVKLTNKHFPCLTVSIELLSVSSSSRVVTHDIPVKVIPRRLWRDLQEPTVPAADVSIYLPVLKTMKSVVEKMKNISNHLIIEANLNGELNLRIETELVSVTTHFKDLGNPPPASGHASQDHDPERMTEVHVDVRKLLQFLAGQQGNPAKATCNIVSNKMVHFDLLHEDVSLQYFIPALS
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1599011..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605549))
location: region:1599011-1605549:-1
so has part: feature:1605433-1605549:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1599011-1599093:-1:exon

XP_031300838.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1605433-1605549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1599011-1599093:-1:exon

HUS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HUS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: checkpoint protein HUS1 isoform X2
translation: MIAKLAKTCTLRISPDKLNFVLSDKVASGGVSMWCELEQANFFSEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKVKLTNKHFPCLTVSIELLSVSSSSRVVTHDIPVKVIPRRLWRDLQEPTVPAADVSIYLPVLKTMKSVVEKMKNISNHLIIEANLNGELNLRIETELVSVTTHFKDLGNPPPASGHASQDHDPERMTEVHVDVRKLLQFLAGQQGNPAKATCNIVSNKMVHFDLLHEDVSLQYFIPALS
SIO_010081: HUS1
subclass of: SO_0000673
so part of: HUS1
location: complement(join(1599011..1599093,1599687..1599806,1600836..1600935,1602715..1602789,1603609..1603716,1605174..1605350,1605433..1605549))
location: region:1599011-1605549:-1
so has part: feature:1605433-1605549:-1:exon
so has part: feature:1605174-1605350:-1:exon
so has part: feature:1603609-1603716:-1:exon
so has part: feature:1602715-1602789:-1:exon
so has part: feature:1600836-1600935:-1:exon
so has part: feature:1599687-1599806:-1:exon
so has part: feature:1599011-1599093:-1:exon

XP_031300839.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1605433-1605549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1605174-1605350:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1603609-1603716:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1602715-1602789:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1600836-1600935:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1599687-1599806:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1599011-1599093:-1:exon

SUN3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SUN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1612921..1630401)
location: region:1612921-1630401:-1
so has part: feature:1612921-1630401:-1:exon
subclass of: SO_0000010

105106221
type: Gene
SIO_000068: ncbigene

position:1612921:-1
position: 1612921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1630401:-1
position: 1630401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1612921-1630401:-1:exon

SUN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SUN3
product: Sad1 and UNC84 domain containing 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444980.1
SIO_010081: SUN3
subclass of: SO_0000673
so part of: SUN3
location: complement(join(1612921..1613211,1614123..1614215,1615937..1616104,1617373..1617488,1619871..1619955,1621043..1621214,1622255..1622295,1626648..1626751,1627554..1627615,1628291..1630401))
location: region:1612921-1630401:-1
so has part: feature:1628291-1630401:-1:exon
so has part: feature:1627554-1627615:-1:exon
so has part: feature:1626648-1626751:-1:exon
so has part: feature:1622255-1622295:-1:exon
so has part: feature:1621043-1621214:-1:exon
so has part: feature:1619871-1619955:-1:exon
so has part: feature:1617373-1617488:-1:exon
so has part: feature:1615937-1616104:-1:exon
so has part: feature:1614123-1614215:-1:exon
so has part: feature:1612921-1613211:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1628291-1630401:-1:exon

position:1628291:-1
position: 1628291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1627554-1627615:-1:exon

position:1627554:-1
position: 1627554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1627615:-1
position: 1627615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1626648-1626751:-1:exon

position:1626648:-1
position: 1626648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1626751:-1
position: 1626751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1622255-1622295:-1:exon

position:1622255:-1
position: 1622255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1622295:-1
position: 1622295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1621043-1621214:-1:exon

position:1621043:-1
position: 1621043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1621214:-1
position: 1621214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1619871-1619955:-1:exon

position:1619871:-1
position: 1619871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1619955:-1
position: 1619955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1617373-1617488:-1:exon

position:1617373:-1
position: 1617373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1617488:-1
position: 1617488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1615937-1616104:-1:exon

position:1615937:-1
position: 1615937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1616104:-1
position: 1616104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1614123-1614215:-1:exon

position:1614123:-1
position: 1614123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1614215:-1
position: 1614215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1612921-1613211:-1:exon

position:1613211:-1
position: 1613211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SUN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SUN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SUN domain-containing protein 3
translation: MCARRKSRRGARLFRGGSEEATSSASRDAVSLEPENPGSSGLPRSWKTVMTTVLILTLLFLGFRNHRRLPEKESPLKSGRFYAGIAEYGSRLYKYQARLRMPKEKLEFLKKESQTLENNFRESLFLAEQIDALKALLRETRAGLRNHSWDAEGEPPAVQDSLEVANEELSNLVDYVLKKLREDQVPMADYALKSAGASIIEAGTSESYKNSKAKLYWHGIGFLNYEMPPDMILQPDVHPGKCWAFPGSQGHALIKLARKITPTAVTMEHISEKVSPSGNISSAPKEFSVYGITKQCEGEEIFLGQFLYSRAGSTVQTFELQHNVSEFFLCVKLKILSNWGHPKYTCLYRFRVHGTPRDHT
SIO_010081: SUN3
subclass of: SO_0000673
so part of: SUN3
location: complement(join(1613092..1613211,1614123..1614215,1615937..1616104,1617373..1617488,1619871..1619955,1621043..1621214,1622255..1622295,1626648..1626751,1627554..1627615,1628291..1628412))
location: region:1613092-1628412:-1
so has part: feature:1628291-1628412:-1:exon
so has part: feature:1627554-1627615:-1:exon
so has part: feature:1626648-1626751:-1:exon
so has part: feature:1622255-1622295:-1:exon
so has part: feature:1621043-1621214:-1:exon
so has part: feature:1619871-1619955:-1:exon
so has part: feature:1617373-1617488:-1:exon
so has part: feature:1615937-1616104:-1:exon
so has part: feature:1614123-1614215:-1:exon
so has part: feature:1613092-1613211:-1:exon

XP_031300840.1
type: Protein
SIO_000068: ncbiprotein

position:1613092:-1
position: 1613092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1628412:-1
position: 1628412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1628291-1628412:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1627554-1627615:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1626648-1626751:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1622255-1622295:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1621043-1621214:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1619871-1619955:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1617373-1617488:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1615937-1616104:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1614123-1614215:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1613092-1613211:-1:exon

C36H7orf57
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: C36H7orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1632307..1646430
location: region:1632307-1646430:1
so has part: feature:1632307-1646430:1:exon
subclass of: SO_0000010

105106222
type: Gene
SIO_000068: ncbigene

position:1632307:1
position: 1632307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1646430:1
position: 1646430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1632307-1646430:1:exon

C36H7orf57
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: C36H7orf57
product: chromosome 36 C7orf57 homolog, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_031444981.1
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1632307..1632565,1636514..1636699,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643493,1645648..1646430)
location: region:1632307-1646430:1
so has part: feature:1632307-1632565:1:exon
so has part: feature:1636514-1636699:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1646430:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1632307-1632565:1:exon

position:1632565:1
position: 1632565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1636514-1636699:1:exon

position:1636514:1
position: 1636514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1636699:1
position: 1636699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1637331-1637439:1:exon

position:1637331:1
position: 1637331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1637439:1
position: 1637439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1638465-1638621:1:exon

position:1638465:1
position: 1638465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1638621:1
position: 1638621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1640573-1640670:1:exon

position:1640573:1
position: 1640573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1640670:1
position: 1640670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1641993-1642192:1:exon

position:1641993:1
position: 1641993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1642192:1
position: 1642192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1643475-1643493:1:exon

position:1643475:1
position: 1643475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1643493:1
position: 1643493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1645648-1646430:1:exon

position:1645648:1
position: 1645648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C36H7orf57
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: C36H7orf57
product: chromosome 36 C7orf57 homolog, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_031444983.1
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1632307..1632565,1636514..1636699,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643489,1645648..1646430)
location: region:1632307-1646430:1
so has part: feature:1632307-1632565:1:exon
so has part: feature:1636514-1636699:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643489:1:exon
so has part: feature:1645648-1646430:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1632307-1632565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1636514-1636699:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1643475-1643489:1:exon

position:1643489:1
position: 1643489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1645648-1646430:1:exon

C36H7orf57
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: C36H7orf57
product: chromosome 36 C7orf57 homolog, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_031444986.1
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1632307..1632565,1636514..1636699,1637331..1637439,1638465..1638621,1640573..1640670,1642041..1642192,1643475..1643493,1645648..1646430)
location: region:1632307-1646430:1
so has part: feature:1632307-1632565:1:exon
so has part: feature:1636514-1636699:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1642041-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1646430:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1632307-1632565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1636514-1636699:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1642041-1642192:1:exon

position:1642041:1
position: 1642041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1645648-1646430:1:exon

C36H7orf57
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: C36H7orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C7orf57 homolog isoform X1
translation: MRTPARSCPRPSRYAPCDWYYHLPVKRSEKAVDAPPVSQIPGLSGLREAPNGHTPGTRRYWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPAAYSLPDWYVHHSKPPTAEQRPIPAVSLPDYMVYQEFSPDRADGSYECRRGPFDFDVKTVWQREAEELEKEKKKVRLPAINSKYPGRVGTPLGPKDPAGSRLSLPPMPGQKTSSPTDFSKLISNGYKDEWLQQRPDTDKRAPQTSGAAVPSPSSGDPEGRQDATPRPGPEAPPEPSPPSESVCINSSRARISLDPVRV
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1632514..1632565,1636514..1636699,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643493,1645648..1645705)
location: region:1632514-1645705:1
so has part: feature:1632514-1632565:1:exon
so has part: feature:1636514-1636699:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1645705:1:exon

XP_031300841.1
type: Protein
SIO_000068: ncbiprotein

position:1632514:1
position: 1632514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1645705:1
position: 1645705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1632514-1632565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1636514-1636699:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1645648-1645705:1:exon

C36H7orf57
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: C36H7orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C7orf57 homolog isoform X5
translation: MRTPARSCPRPSRYAPCDWYYHLPVKRSEKAVDAPPVSQIPGLSGLREAPNGHTPGTRRYWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPAAYSLPDWYVHHSKPPTAEQRPIPAVSLPDYMVYQEFSPDRADGSYECRRGPFDFDVKTVWQREAEELEKEKKKVRLPAINSKYPGRVGTPLGPKDPAGSRLSLPPINGYKDEWLQQRPDTDKRAPQTSGAAVPSPSSGDPEGRQDATPRPGPEAPPEPSPPSESVCINSSRARISLDPVRV
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1632514..1632565,1636514..1636699,1637331..1637439,1638465..1638621,1640573..1640670,1642041..1642192,1643475..1643493,1645648..1645705)
location: region:1632514-1645705:1
so has part: feature:1632514-1632565:1:exon
so has part: feature:1636514-1636699:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1642041-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1645705:1:exon

XP_031300846.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1632514-1632565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1636514-1636699:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1642041-1642192:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1645648-1645705:1:exon

C36H7orf57
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: C36H7orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C7orf57 homolog isoform X3
translation: MRTPARSCPRPSRYAPCDWYYHLPVKRSEKAVDAPPVSQIPGLSGLREAPNGHTPGTRRYWIKETDSEYVKLAKQGGRPDLLKHFAPGTRKGSPAAYSLPDWYVHHSKPPTAEQRPIPAVSLPDYMVYQEFSPDRADGSYECRRGPFDFDVKTVWQREAEELEKEKKKVRLPAINSKYPGRVGTPLGPKDPAGSRLSLPPMPGQKTSSPTDFSKLISNGYKDEWLQQRPDTDKRAPQTSGAAVPSPSSGDPEGRQDATPRPGPEAPPEPSPPSPSASTPAELE
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1632514..1632565,1636514..1636699,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643489,1645648..1645682)
location: region:1632514-1645682:1
so has part: feature:1632514-1632565:1:exon
so has part: feature:1636514-1636699:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643489:1:exon
so has part: feature:1645648-1645682:1:exon

XP_031300843.1
type: Protein
SIO_000068: ncbiprotein

position:1645682:1
position: 1645682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1632514-1632565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1636514-1636699:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1643475-1643489:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1645648-1645682:1:exon

C36H7orf57
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: C36H7orf57
product: chromosome 36 C7orf57 homolog, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_031444982.1
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1636706..1637258,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643493,1645648..1646430)
location: region:1636706-1646430:1
so has part: feature:1636706-1637258:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1646430:1:exon

position:1636706:1
position: 1636706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1636706-1637258:1:exon

position:1637258:1
position: 1637258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1645648-1646430:1:exon

C36H7orf57
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: C36H7orf57
product: chromosome 36 C7orf57 homolog, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_031444985.1
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1636706..1637243,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643493,1645648..1646430)
location: region:1636706-1646430:1
so has part: feature:1636706-1637243:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1646430:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1636706-1637243:1:exon

position:1637243:1
position: 1637243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1645648-1646430:1:exon

C36H7orf57
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: C36H7orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C7orf57 homolog isoform X2
translation: MSAWGKHPARDGWMLRTGAGSAPGQGGECEGHEGCSPQPISAGAQAGEDQGRPGAQGTPRSTPSELVDCKPPADLLKHFAPGTRKGSPAAYSLPDWYVHHSKPPTAEQRPIPAVSLPDYMVYQEFSPDRADGSYECRRGPFDFDVKTVWQREAEELEKEKKKVRLPAINSKYPGRVGTPLGPKDPAGSRLSLPPMPGQKTSSPTDFSKLISNGYKDEWLQQRPDTDKRAPQTSGAAVPSPSSGDPEGRQDATPRPGPEAPPEPSPPSESVCINSSRARISLDPVRV
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1637039..1637258,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643493,1645648..1645705)
location: region:1637039-1645705:1
so has part: feature:1637039-1637258:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1645705:1:exon

XP_031300842.1
type: Protein
SIO_000068: ncbiprotein

position:1637039:1
position: 1637039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1637039-1637258:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1645648-1645705:1:exon

C36H7orf57
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: C36H7orf57
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C7orf57 homolog isoform X4
translation: MSAWGKHPARDGWMLRTGAGSAPGQGGECEGHEGCSPQPISAGAQAGEDQGRPGAQGTPRSTPSELVDYLLKHFAPGTRKGSPAAYSLPDWYVHHSKPPTAEQRPIPAVSLPDYMVYQEFSPDRADGSYECRRGPFDFDVKTVWQREAEELEKEKKKVRLPAINSKYPGRVGTPLGPKDPAGSRLSLPPMPGQKTSSPTDFSKLISNGYKDEWLQQRPDTDKRAPQTSGAAVPSPSSGDPEGRQDATPRPGPEAPPEPSPPSESVCINSSRARISLDPVRV
SIO_010081: C36H7orf57
subclass of: SO_0000673
so part of: C36H7orf57
location: join(1637039..1637243,1637331..1637439,1638465..1638621,1640573..1640670,1641993..1642192,1643475..1643493,1645648..1645705)
location: region:1637039-1645705:1
so has part: feature:1637039-1637243:1:exon
so has part: feature:1637331-1637439:1:exon
so has part: feature:1638465-1638621:1:exon
so has part: feature:1640573-1640670:1:exon
so has part: feature:1641993-1642192:1:exon
so has part: feature:1643475-1643493:1:exon
so has part: feature:1645648-1645705:1:exon

XP_031300845.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1637039-1637243:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1637331-1637439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1638465-1638621:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1640573-1640670:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1641993-1642192:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1643475-1643493:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1645648-1645705:1:exon

LOC116150656
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150656
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1647590..1653030)
location: region:1647590-1653030:-1
so has part: feature:1647590-1653030:-1:exon
subclass of: SO_0000011

116150656
type: Gene
SIO_000068: ncbigene

position:1647590:-1
position: 1647590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1653030:-1
position: 1653030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1647590-1653030:-1:exon

LOC116150656
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150656
product: uncharacterized LOC116150656
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134367.1
SIO_010081: LOC116150656
subclass of: SO_0000673
so part of: LOC116150656
location: complement(join(1647590..1647736,1652906..1653030))
location: region:1647590-1653030:-1
so has part: feature:1652906-1653030:-1:exon
so has part: feature:1647590-1647736:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1652906-1653030:-1:exon

position:1652906:-1
position: 1652906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1647590-1647736:-1:exon

position:1647736:-1
position: 1647736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

UPP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: UPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1652456..1667720
location: region:1652456-1667720:1
so has part: feature:1652456-1667720:1:exon
subclass of: SO_0000010

105106224
type: Gene
SIO_000068: ncbigene

position:1652456:1
position: 1652456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1667720:1
position: 1667720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652456-1667720:1:exon

UPP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UPP1
product: uridine phosphorylase 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031444991.1
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1652456..1652477,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667720)
location: region:1652456-1667720:1
so has part: feature:1652456-1652477:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667720:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1652456-1652477:1:exon

position:1652477:1
position: 1652477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

position:1659869:1
position: 1659869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1659933:1
position: 1659933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

position:1661931:1
position: 1661931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1662045:1
position: 1662045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

position:1663675:1
position: 1663675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1663833:1
position: 1663833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

position:1664757:1
position: 1664757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1664871:1
position: 1664871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

position:1666315:1
position: 1666315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1666524:1
position: 1666524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

position:1666768:1
position: 1666768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1666914:1
position: 1666914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667720:1:exon

position:1667517:1
position: 1667517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

UPP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UPP1
product: uridine phosphorylase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_031444987.1
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1652598..1652838,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667720)
location: region:1652598-1667720:1
so has part: feature:1652598-1652838:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667720:1:exon

position:1652598:1
position: 1652598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652598-1652838:1:exon

position:1652838:1
position: 1652838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667720:1:exon

UPP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uridine phosphorylase 1 isoform X1
translation: MARPLRPTLRPPGTGSGLPRWLGGGGPPRQAWAPAPRPRGLSPLPACLLLFPGRKQGPASVERMASAGAEAEKPGECNDLVQLRNPNIATMKEDILYHFGLSTSTHDFPAMFGDVKFVCVGGSPSRMKAFIKYVAGELGLDHPGADYPNICMGTDRYTMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCSGVTAIRIGTSGGIGLEPGSVVITRQAVDACFKPEFEQMVLRKRVVRNTDLDERLVRELMQCSAELGEFPTVVGNTMCTLDFYEGQARLDGALCSYTEKDKQEYLQAAYAAGIRNIEMEASVFASMCNACGLRAAVVCVTLLNRLEGDQISSPHDVLAEYQQRPQRLVGHFIKQHLAAARGPRAPARSGPCGCE
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1652671..1652838,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667701)
location: region:1652671-1667701:1
so has part: feature:1652671-1652838:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667701:1:exon

XP_031300847.1
type: Protein
SIO_000068: ncbiprotein

position:1652671:1
position: 1652671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1667701:1
position: 1667701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652671-1652838:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667701:1:exon

UPP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UPP1
product: uridine phosphorylase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031444989.1
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1652925..1652945,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667720)
location: region:1652925-1667720:1
so has part: feature:1652925-1652945:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667720:1:exon

position:1652925:1
position: 1652925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652925-1652945:1:exon

position:1652945:1
position: 1652945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667720:1:exon

UPP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uridine phosphorylase 1 isoform X3
translation: MPAEGPASVERMASAGAEAEKPGECNDLVQLRNPNIATMKEDILYHFGLSTSTHDFPAMFGDVKFVCVGGSPSRMKAFIKYVAGELGLDHPGADYPNICMGTDRYTMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCSGVTAIRIGTSGGIGLEPGSVVITRQAVDACFKPEFEQMVLRKRVVRNTDLDERLVRELMQCSAELGEFPTVVGNTMCTLDFYEGQARLDGALCSYTEKDKQEYLQAAYAAGIRNIEMEASVFASMCNACGLRAAVVCVTLLNRLEGDQISSPHDVLAEYQQRPQRLVGHFIKQHLAAARGPRAPARSGPCGCE
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1652934..1652945,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667701)
location: region:1652934-1667701:1
so has part: feature:1652934-1652945:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667701:1:exon

XP_031300849.1
type: Protein
SIO_000068: ncbiprotein

position:1652934:1
position: 1652934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652934-1652945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667701:1:exon

UPP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UPP1
product: uridine phosphorylase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_031444990.1
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1652984..1653115,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667720)
location: region:1652984-1667720:1
so has part: feature:1652984-1653115:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667720:1:exon

position:1652984:1
position: 1652984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1652984-1653115:1:exon

position:1653115:1
position: 1653115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667720:1:exon

UPP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UPP1
product: uridine phosphorylase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031444988.1
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1653042..1653115,1659224..1659417,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667720)
location: region:1653042-1667720:1
so has part: feature:1653042-1653115:1:exon
so has part: feature:1659224-1659417:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667720:1:exon

position:1653042:1
position: 1653042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1653042-1653115:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1659224-1659417:1:exon

position:1659224:1
position: 1659224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1659417:1
position: 1659417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1667517-1667720:1:exon

UPP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uridine phosphorylase 1 isoform X2
translation: MAGRPGSEDRFSTGVCGASPRGSSLKLATLQGPASVERMASAGAEAEKPGECNDLVQLRNPNIATMKEDILYHFGLSTSTHDFPAMFGDVKFVCVGGSPSRMKAFIKYVAGELGLDHPGADYPNICMGTDRYTMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCSGVTAIRIGTSGGIGLEPGSVVITRQAVDACFKPEFEQMVLRKRVVRNTDLDERLVRELMQCSAELGEFPTVVGNTMCTLDFYEGQARLDGALCSYTEKDKQEYLQAAYAAGIRNIEMEASVFASMCNACGLRAAVVCVTLLNRLEGDQISSPHDVLAEYQQRPQRLVGHFIKQHLAAARGPRAPARSGPCGCE
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1659325..1659417,1659869..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667701)
location: region:1659325-1667701:1
so has part: feature:1659325-1659417:1:exon
so has part: feature:1659869-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667701:1:exon

XP_031300848.1
type: Protein
SIO_000068: ncbiprotein

position:1659325:1
position: 1659325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1659325-1659417:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1659869-1659933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1667517-1667701:1:exon

UPP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uridine phosphorylase 1 isoform X4
translation: MASAGAEAEKPGECNDLVQLRNPNIATMKEDILYHFGLSTSTHDFPAMFGDVKFVCVGGSPSRMKAFIKYVAGELGLDHPGADYPNICMGTDRYTMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCSGVTAIRIGTSGGIGLEPGSVVITRQAVDACFKPEFEQMVLRKRVVRNTDLDERLVRELMQCSAELGEFPTVVGNTMCTLDFYEGQARLDGALCSYTEKDKQEYLQAAYAAGIRNIEMEASVFASMCNACGLRAAVVCVTLLNRLEGDQISSPHDVLAEYQQRPQRLVGHFIKQHLAAARGPRAPARSGPCGCE
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1659890..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667701)
location: region:1659890-1667701:1
so has part: feature:1659890-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667701:1:exon

XP_031300850.1
type: Protein
SIO_000068: ncbiprotein

position:1659890:1
position: 1659890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1659890-1659933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1667517-1667701:1:exon

UPP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uridine phosphorylase 1 isoform X4
translation: MASAGAEAEKPGECNDLVQLRNPNIATMKEDILYHFGLSTSTHDFPAMFGDVKFVCVGGSPSRMKAFIKYVAGELGLDHPGADYPNICMGTDRYTMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCSGVTAIRIGTSGGIGLEPGSVVITRQAVDACFKPEFEQMVLRKRVVRNTDLDERLVRELMQCSAELGEFPTVVGNTMCTLDFYEGQARLDGALCSYTEKDKQEYLQAAYAAGIRNIEMEASVFASMCNACGLRAAVVCVTLLNRLEGDQISSPHDVLAEYQQRPQRLVGHFIKQHLAAARGPRAPARSGPCGCE
SIO_010081: UPP1
subclass of: SO_0000673
so part of: UPP1
location: join(1659890..1659933,1661931..1662045,1663675..1663833,1664757..1664871,1666315..1666524,1666768..1666914,1667517..1667701)
location: region:1659890-1667701:1
so has part: feature:1659890-1659933:1:exon
so has part: feature:1661931-1662045:1:exon
so has part: feature:1663675-1663833:1:exon
so has part: feature:1664757-1664871:1:exon
so has part: feature:1666315-1666524:1:exon
so has part: feature:1666768-1666914:1:exon
so has part: feature:1667517-1667701:1:exon

XP_031300851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1659890-1659933:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1661931-1662045:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1663675-1663833:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1664757-1664871:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1666315-1666524:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1666768-1666914:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1667517-1667701:1:exon

LOC116150636
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150636
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1674863..1700858
location: region:1674863-1700858:1
so has part: feature:1674863-1700858:1:exon
subclass of: SO_0000010

116150636
type: Gene
SIO_000068: ncbigene

position:1674863:1
position: 1674863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1700858:1
position: 1700858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1674863-1700858:1:exon

LOC116150636
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150636
product: ATP-binding cassette sub-family A member 13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 73% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444961.1
SIO_010081: LOC116150636
subclass of: SO_0000673
so part of: LOC116150636
location: join(1674863..1674960,1692518..1692611,1693181..1693304,1700696..1700858)
location: region:1674863-1700858:1
so has part: feature:1674863-1674960:1:exon
so has part: feature:1692518-1692611:1:exon
so has part: feature:1693181-1693304:1:exon
so has part: feature:1700696-1700858:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1674863-1674960:1:exon

position:1674960:1
position: 1674960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1692518-1692611:1:exon

position:1692518:1
position: 1692518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1692611:1
position: 1692611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1693181-1693304:1:exon

position:1693181:1
position: 1693181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1693304:1
position: 1693304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1700696-1700858:1:exon

position:1700696:1
position: 1700696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150636
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150636
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-binding cassette sub-family A member 13-like
translation: MGRAGRQFRALLWKNWLCRIRHPVLSLSEFFWPCILFMILTILRFQEPPRQRDNCYLQPRDLPSRGVFPFVRSLLCNTGSRCRNTSYEGSGEHRFGSSRFQSIIGRGEEINDLAFLMKIQDLAEEIYKMMDKAQNLQELWVERSKTPGK
SIO_010081: LOC116150636
subclass of: SO_0000673
so part of: LOC116150636
location: join(1674892..1674960,1692518..1692611,1693181..1693304,1700696..1700858)
location: region:1674892-1700858:1
so has part: feature:1674892-1674960:1:exon
so has part: feature:1692518-1692611:1:exon
so has part: feature:1693181-1693304:1:exon
so has part: feature:1700696-1700858:1:exon

XP_031300821.1
type: Protein
SIO_000068: ncbiprotein

position:1674892:1
position: 1674892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1674892-1674960:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1692518-1692611:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1693181-1693304:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1700696-1700858:1:exon

ABCA13
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ABCA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1702347..1728745
location: region:1702347-1728745:1
so has part: feature:1702347-1728745:1:exon
subclass of: SO_0000010

116150637
type: Gene
SIO_000068: ncbigene

position:1702347:1
position: 1702347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1728745:1
position: 1728745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1702347-1728745:1:exon

ABCA13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ABCA13
product: ATP binding cassette subfamily A member 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444962.1
SIO_010081: ABCA13
subclass of: SO_0000673
so part of: ABCA13
location: join(1702347..1702510,1703245..1707981,1709517..1711346,1714975..1715084,1716785..1716903,1720292..1720455,1721147..1721226,1721889..1722010,1727840..1728745)
location: region:1702347-1728745:1
so has part: feature:1702347-1702510:1:exon
so has part: feature:1703245-1707981:1:exon
so has part: feature:1709517-1711346:1:exon
so has part: feature:1714975-1715084:1:exon
so has part: feature:1716785-1716903:1:exon
so has part: feature:1720292-1720455:1:exon
so has part: feature:1721147-1721226:1:exon
so has part: feature:1721889-1722010:1:exon
so has part: feature:1727840-1728745:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1702347-1702510:1:exon

position:1702510:1
position: 1702510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1703245-1707981:1:exon

position:1703245:1
position: 1703245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1707981:1
position: 1707981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1709517-1711346:1:exon

position:1709517:1
position: 1709517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1711346:1
position: 1711346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1714975-1715084:1:exon

position:1714975:1
position: 1714975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1715084:1
position: 1715084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1716785-1716903:1:exon

position:1716785:1
position: 1716785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1716903:1
position: 1716903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1720292-1720455:1:exon

position:1720292:1
position: 1720292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1720455:1
position: 1720455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1721147-1721226:1:exon

position:1721147:1
position: 1721147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1721226:1
position: 1721226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1721889-1722010:1:exon

position:1721889:1
position: 1721889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1722010:1
position: 1722010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1727840-1728745:1:exon

position:1727840:1
position: 1727840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ABCA13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ABCA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-binding cassette sub-family A member 13
translation: MDLNQTEEAIATLERLLRQRQVWDFLLSLPGLFAHNVHVEDGVRAALHLLRAVFKVLTSTEGLLLVEKKLHALGDEHVGFLLSFMEYLEKFLLPNLFDSDGAPRFRNLSFLPETILNTSHLWISRFKSLERDPSMQTLLESGEEMIKKVQTLESLWIRKESRNISRLMELVLFQINPKLLDLWMHGLLEGEKAKLEILPTVANFSDPESETVLRKSLNLSQLFHLDGPTSPATEMDFVRLSEIMIKSLQEFGFLRQEQVSKAVDTVYALRNASDRFSALSEPQKRDVDQMLTHLYVSVFQDPDAALLLQIYSSFYQSIYQFLSIRSGESLLSPLTQTSKHILNLTKQFDLQDVSKAIAFFHETARVLGGISEASSCQQLLAIFNFLERQAQTPVSTEGPDTAAIHATLTGLRQLFTVDEDFRVALLQYVSQLFNGSVEALLGNECSVLGDKSISPVNYSIDGGSSVIPPWAQILSSPSANGSKLSEFMGVHCTVSWLQMWTEICTYVARMCQLDVSVLSPLHDGLTQLLGELEGDVNIPQGCPGLFPTHHPARLLLHLFTNLTPPDGFHDWGNVLSLKGLSAALRDGLVRAKLLRLGHVEKFLFTVETALSQLKSLPSNTPGSREFLRSVLDVFMQLSNTSEQTERRVHWTHRFLSNNLSNYEAEFESLIPRLRETLLFLKNVSHDRDLLSCADVFRNVTEFILEGGLFCVNTSQRMWHLLAVLNSTFSSEDAVSRLEGCVAWIDAVNRLCVIGNSSFSQGHPQGILGSFADVEDKINSTLKLVTWMLPGMEPSCSPNTSNMNCVNAYLKNVTALLNAILATVFEKEEVPEFEILSTLFSDSTNQVKMVIGHLTRDFDFPSQSNWTRFTELILKPIERADKTPHRFQNIWPRLAALGKGVQTLVKGISANVLGNDTSSKTEKILQVFATSARETDIHGVGNSLYQLAGYLALNLSHDPQHPPRTSAHEMLKAVGLSMQLARDAFSSLMPSVYHNIPQGPGNFQVVKKVASLLRNLKKTVIDLLVGQVKQIGDSLVGFFQNVSRLGPGGLGVNLLVDLMEKLVDSSRAWNVNHLLRLSRLFPKDDVSAVVDAYYGLPHAVRLLRGAADKNVTAALKDVYNFSLLHGTRIANVSKEDFAEVIKTLSAMIELISDKPEVLSEALTCFPVFWCGNHSASGLRQNPEFESCAAHVLTFPALYSGVAGVLAHLRLSAPGEESRCLNEGSQEEVTRKVVCAMHEFMDWNSILLELSEVFRVRTLLVKNVQEFWQKVLPFVPAPGNHSRGSLSELCPRGPIKQVALQIIEKLKNVNFTKVTLDGNLLDKLGSLNVDEAEASARNNTFLNLERVINLLSGDQSLGNSTNSLVSPFVMFLNANLTGRALQALSSFIKKSEAASSLEELGLEFDRILEDLTHDLSIRPLFSERNKEMQTAHSVLLQDITLQLARFLESLDSLSLKALEIAEDFVLAVNKWLHEYTKGGYSRMIQTLLLLAADGSSADGTASLTKDVAALWGYLRNVSGEGHLNVVFLPRLLNQERLTNFSVVRLLFERFLSNRTDTLAAVNVSDVDLWVVDFIGRALNQMPSEDGERLTVPLRSMADFTEQLLETFFSFFLKENSGDETALLLKDVHGDTSAEMSFVPKDKILDILKADQFLTSVKEDRLRNIFSTLKETLYHLVKHPFTVDGGGFYLDNDQGWTFMRDLFTRLLTETLLKNRTDNDLGFLTAAVKHLFSQKNGSEDLVKLSRDLRAALRLVREASAGMAGLLDTLSNSPVKDFLGAYPALQEVILANLTDLLSLANNSFLLRNRATLEITERLLGVIARAGGHGQVLEPLLEMSDALITLVQDGAALRRLATSVNSTVGLLNLAKGISRRLASLVAAHFTASANDTMKIFDTLYSVLQQSVRNVVNETATVKKGDQLLFEKIDALLTPFLDLAFGMIGVKPNSSQDSDIFNTSARVFAYVNQSEKFYDLSEEIAGFLSSVNIDAGDVEHLVVAFNNETEG…
SIO_010081: ABCA13
subclass of: SO_0000673
so part of: ABCA13
location: join(1702347..1702510,1703245..1707981,1709517..1711346,1714975..1715084,1716785..1716903,1720292..1720455,1721147..1721226,1721889..1722010,1727840..1728055)
location: region:1702347-1728055:1
so has part: feature:1702347-1702510:1:exon
so has part: feature:1703245-1707981:1:exon
so has part: feature:1709517-1711346:1:exon
so has part: feature:1714975-1715084:1:exon
so has part: feature:1716785-1716903:1:exon
so has part: feature:1720292-1720455:1:exon
so has part: feature:1721147-1721226:1:exon
so has part: feature:1721889-1722010:1:exon
so has part: feature:1727840-1728055:1:exon

XP_031300822.1
type: Protein
SIO_000068: ncbiprotein

position:1728055:1
position: 1728055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1702347-1702510:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1703245-1707981:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1709517-1711346:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1714975-1715084:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1716785-1716903:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1720292-1720455:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1721147-1721226:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1721889-1722010:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1727840-1728055:1:exon

LOC105106225
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105106225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1735928..1877333
location: region:1735928-1877333:1
so has part: feature:1735928-1877333:1:exon
subclass of: SO_0000010

105106225
type: Gene
SIO_000068: ncbigene

position:1735928:1
position: 1735928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1877333:1
position: 1877333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1735928-1877333:1:exon

LOC105106225
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105106225
product: ATP-binding cassette sub-family A member 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444992.1
SIO_010081: LOC105106225
subclass of: SO_0000673
so part of: LOC105106225
location: join(1735928..1736040,1737896..1737986,1740214..1740390,1743064..1743370,1747754..1747868,1750231..1750560,1752710..1752779,1754190..1754321,1759877..1760014,1761193..1761361,1763403..1763621,1764256..1764452,1769219..1769376,1770507..1770737,1779306..1779405,1790420..1790660,1794185..1794274,1798648..1798717,1801292..1801410,1802941..1803022,1809119..1809227,1813054..1813108,1815887..1816064,1817176..1817291,1818555..1818711,1824219..1824472,1836874..1837066,1840199..1840308,1858649..1858799,1862596..1862730,1865845..1865948,1867462..1867554,1873656..1873767,1875103..1875240,1875872..1877333)
location: region:1735928-1877333:1
so has part: feature:1735928-1736040:1:exon
so has part: feature:1737896-1737986:1:exon
so has part: feature:1740214-1740390:1:exon
so has part: feature:1743064-1743370:1:exon
so has part: feature:1747754-1747868:1:exon
so has part: feature:1750231-1750560:1:exon
so has part: feature:1752710-1752779:1:exon
so has part: feature:1754190-1754321:1:exon
so has part: feature:1759877-1760014:1:exon
so has part: feature:1761193-1761361:1:exon
so has part: feature:1763403-1763621:1:exon
so has part: feature:1764256-1764452:1:exon
so has part: feature:1769219-1769376:1:exon
so has part: feature:1770507-1770737:1:exon
so has part: feature:1779306-1779405:1:exon
so has part: feature:1790420-1790660:1:exon
so has part: feature:1794185-1794274:1:exon
so has part: feature:1798648-1798717:1:exon
so has part: feature:1801292-1801410:1:exon
so has part: feature:1802941-1803022:1:exon
so has part: feature:1809119-1809227:1:exon
so has part: feature:1813054-1813108:1:exon
so has part: feature:1815887-1816064:1:exon
so has part: feature:1817176-1817291:1:exon
so has part: feature:1818555-1818711:1:exon
so has part: feature:1824219-1824472:1:exon
so has part: feature:1836874-1837066:1:exon
so has part: feature:1840199-1840308:1:exon
so has part: feature:1858649-1858799:1:exon
so has part: feature:1862596-1862730:1:exon
so has part: feature:1865845-1865948:1:exon
so has part: feature:1867462-1867554:1:exon
so has part: feature:1873656-1873767:1:exon
so has part: feature:1875103-1875240:1:exon
so has part: feature:1875872-1877333:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1735928-1736040:1:exon

position:1736040:1
position: 1736040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1737896-1737986:1:exon

position:1737896:1
position: 1737896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1737986:1
position: 1737986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1740214-1740390:1:exon

position:1740214:1
position: 1740214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1740390:1
position: 1740390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1743064-1743370:1:exon

position:1743064:1
position: 1743064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1743370:1
position: 1743370
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1747754-1747868:1:exon

position:1747754:1
position: 1747754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1747868:1
position: 1747868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1750231-1750560:1:exon

position:1750231:1
position: 1750231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1750560:1
position: 1750560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1752710-1752779:1:exon

position:1752710:1
position: 1752710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1752779:1
position: 1752779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1754190-1754321:1:exon

position:1754190:1
position: 1754190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1754321:1
position: 1754321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1759877-1760014:1:exon

position:1759877:1
position: 1759877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1760014:1
position: 1760014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1761193-1761361:1:exon

position:1761193:1
position: 1761193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1761361:1
position: 1761361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1763403-1763621:1:exon

position:1763403:1
position: 1763403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1763621:1
position: 1763621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1764256-1764452:1:exon

position:1764256:1
position: 1764256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1764452:1
position: 1764452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1769219-1769376:1:exon

position:1769219:1
position: 1769219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1769376:1
position: 1769376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1770507-1770737:1:exon

position:1770507:1
position: 1770507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1770737:1
position: 1770737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1779306-1779405:1:exon

position:1779306:1
position: 1779306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1779405:1
position: 1779405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1790420-1790660:1:exon

position:1790420:1
position: 1790420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1790660:1
position: 1790660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1794185-1794274:1:exon

position:1794185:1
position: 1794185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1794274:1
position: 1794274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1798648-1798717:1:exon

position:1798648:1
position: 1798648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1798717:1
position: 1798717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1801292-1801410:1:exon

position:1801292:1
position: 1801292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1801410:1
position: 1801410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1802941-1803022:1:exon

position:1802941:1
position: 1802941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1803022:1
position: 1803022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1809119-1809227:1:exon

position:1809119:1
position: 1809119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1809227:1
position: 1809227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1813054-1813108:1:exon

position:1813054:1
position: 1813054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1813108:1
position: 1813108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1815887-1816064:1:exon

position:1815887:1
position: 1815887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1816064:1
position: 1816064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1817176-1817291:1:exon

position:1817176:1
position: 1817176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1817291:1
position: 1817291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1818555-1818711:1:exon

position:1818555:1
position: 1818555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1818711:1
position: 1818711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1824219-1824472:1:exon

position:1824219:1
position: 1824219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1824472:1
position: 1824472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:1836874-1837066:1:exon

position:1836874:1
position: 1836874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1837066:1
position: 1837066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1840199-1840308:1:exon

position:1840199:1
position: 1840199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1840308:1
position: 1840308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1858649-1858799:1:exon

position:1858649:1
position: 1858649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1858799:1
position: 1858799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:1862596-1862730:1:exon

position:1862596:1
position: 1862596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1862730:1
position: 1862730
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:1865845-1865948:1:exon

position:1865845:1
position: 1865845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1865948:1
position: 1865948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:1867462-1867554:1:exon

position:1867462:1
position: 1867462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1867554:1
position: 1867554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:1873656-1873767:1:exon

position:1873656:1
position: 1873656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1873767:1
position: 1873767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:1875103-1875240:1:exon

position:1875103:1
position: 1875103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1875240:1
position: 1875240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:1875872-1877333:1:exon

position:1875872:1
position: 1875872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105106225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105106225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP-binding cassette sub-family A member 13
translation: MSSVFQGSRSGQMLSQLQGALRDRFLRSFVESQLHIDADKLTEELRALGRKVDAMLGHTGAGRVHFLGRVLVNLSSCVALSRFQALDSVPALESKAQELMRRNDFLASIIFNTSGPGRNLNSGSLQLPPHVTYTIRTSVLYSMRTDLVTNPSWKFHPQSLPADGFKYNYVFVPLQDMIDRAIVSVQTGRDALEPGTQAQAMPYPCHSSDLFLNNVGFFFPLIMMLTWMVSVASVVRKLVYEREVQLEEYVRIMGVHPAVPFLAWFVENMAVLSLSSAALAVVLKASGIFTHSNAFIVFLFLLDFGVSVVMLSYFLSAFFSQANTAALCTGLVYMISFLPYIVLLVLHNQLSVAVQTLLCLLSTTAFGQGVFFVTFLEGQETGIQWSNMYQPPGQADMTFGWVCWMLLLDSGLYFLCGWYLSNLIPGTFGLRKPWYFPFTASYWKSVCGLGVKRERTPTSDLFFVRENSDGKDSSLQTGEGTPLGVTLVSVTKEYERHQPAVRDLTLTFHGDQITALLGTNGAGKTTVISLLTGLHAPTSGTILVNGRDLRTDLPAVRRELGLCPQRDVLFDDLTVLEQLLLFGSIKAPQWPREELRRQVNRTLRDVELTQHQHKQTRALSGGLKRKLSIGIAFLGTSRTVVLDEPTSGVDPCSRRGIWDILLKYRKGRTVIFTTHHLDEAEALSDRVAVLQRGQLQCCGPPSSLTEAAGQGLRLTLTKQPAVQEVDDAKDTACVTSLIQTHIPQAFLRGSSGAELSYAIPEEADRAAFEGLFQALDQNLRRLRLTGYGLSDATLEEVFLNLLRDSQEPSAAAPGPEPRSPRPPERAPGHCGGTAALRGSPLLLAQTAALLGRRLRRSCRAWRGTLSTLLLPVLFVGLAMALFMVRPLAVSYPPLKLALGHYDTDETYFFSSRSDDKGLTHVLLQNFGDRDLLCANSNPGLKNSPCWHTDPAPPPGVQDPCGCQKCPNGSVQAPYLANRLGHRLLNLSALRLEEYLLAPAEKPRLGGWSFGVSSPDQDANSNISKPKTLAKVWYNQKGFHALPSYLNHLNNLILWRLLPPTVDSRQYGITVYSHPYGGALLNEDRILESIRQCGVALCIVLGFSILTASISGAVVRDRVTGAKRLQHLSGLGCRTYWVTNFACDMLFYLISVCLCVAVVVAFQLTAFTFRQNLAAMALLLALFGYATLPWMYLISRIFSSSDVAFICYVSLNFVFGLCTLLMTVMPRLLAITSKAQNLQSIYDVLKWVFTVFPQFCLGQGLIELCYNQIKYDLTHSFGVDSYVSPFEMNFLGWIFVQLASQGTVLLLLRVLLHGDLLQWSRRPPAMQGTVTFSKDIDVEKEQMRVLKGRTEGDILVLCNLSKNYRSFCRRTTAVQDVSLGIRRGECFGLLGANGAGKTTMFKMLNGDTPPTSGHAVIRTPMGEDVRLSSAGAAGVRIGYCPQQDALDDFLTGWEHLHYYCCLRGIPKQCIPEVAGDLVRHLHLETHVHKLVATYSGGTKRKLSTALALLGKPDLLLLDEPSSGMDPCSKRYLWKAIAKEVQEGCAVVLTSHSMEECEALCTRLAVMVRGSCRCLGSPQHIKNRFGEGYTVKVWLREEASQNEHAAVCDCLTLCFPGLQFKGQRHNLLEYDVPKRRGCLADLFKVLENHKNVLKIRHYFITQTSLEQVFINFATEQQQTPPPSADPASDRDRPQHLPI
SIO_010081: LOC105106225
subclass of: SO_0000673
so part of: LOC105106225
location: join(1735987..1736040,1737896..1737986,1740214..1740390,1743064..1743370,1747754..1747868,1750231..1750560,1752710..1752779,1754190..1754321,1759877..1760014,1761193..1761361,1763403..1763621,1764256..1764452,1769219..1769376,1770507..1770737,1779306..1779405,1790420..1790660,1794185..1794274,1798648..1798717,1801292..1801410,1802941..1803022,1809119..1809227,1813054..1813108,1815887..1816064,1817176..1817291,1818555..1818711,1824219..1824472,1836874..1837066,1840199..1840308,1858649..1858799,1862596..1862730,1865845..1865948,1867462..1867554,1873656..1873767,1875103..1875240,1875872..1875967)
location: region:1735987-1875967:1
so has part: feature:1735987-1736040:1:exon
so has part: feature:1737896-1737986:1:exon
so has part: feature:1740214-1740390:1:exon
so has part: feature:1743064-1743370:1:exon
so has part: feature:1747754-1747868:1:exon
so has part: feature:1750231-1750560:1:exon
so has part: feature:1752710-1752779:1:exon
so has part: feature:1754190-1754321:1:exon
so has part: feature:1759877-1760014:1:exon
so has part: feature:1761193-1761361:1:exon
so has part: feature:1763403-1763621:1:exon
so has part: feature:1764256-1764452:1:exon
so has part: feature:1769219-1769376:1:exon
so has part: feature:1770507-1770737:1:exon
so has part: feature:1779306-1779405:1:exon
so has part: feature:1790420-1790660:1:exon
so has part: feature:1794185-1794274:1:exon
so has part: feature:1798648-1798717:1:exon
so has part: feature:1801292-1801410:1:exon
so has part: feature:1802941-1803022:1:exon
so has part: feature:1809119-1809227:1:exon
so has part: feature:1813054-1813108:1:exon
so has part: feature:1815887-1816064:1:exon
so has part: feature:1817176-1817291:1:exon
so has part: feature:1818555-1818711:1:exon
so has part: feature:1824219-1824472:1:exon
so has part: feature:1836874-1837066:1:exon
so has part: feature:1840199-1840308:1:exon
so has part: feature:1858649-1858799:1:exon
so has part: feature:1862596-1862730:1:exon
so has part: feature:1865845-1865948:1:exon
so has part: feature:1867462-1867554:1:exon
so has part: feature:1873656-1873767:1:exon
so has part: feature:1875103-1875240:1:exon
so has part: feature:1875872-1875967:1:exon

XP_031300852.1
type: Protein
SIO_000068: ncbiprotein

position:1735987:1
position: 1735987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1875967:1
position: 1875967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1735987-1736040:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1737896-1737986:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1740214-1740390:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1743064-1743370:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1747754-1747868:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1750231-1750560:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1752710-1752779:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1754190-1754321:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1759877-1760014:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1761193-1761361:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1763403-1763621:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1764256-1764452:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1769219-1769376:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1770507-1770737:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1779306-1779405:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1790420-1790660:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1794185-1794274:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1798648-1798717:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1801292-1801410:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1802941-1803022:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1809119-1809227:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1813054-1813108:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1815887-1816064:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1817176-1817291:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1818555-1818711:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1824219-1824472:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1836874-1837066:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1840199-1840308:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1858649-1858799:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1862596-1862730:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1865845-1865948:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1867462-1867554:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1873656-1873767:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1875103-1875240:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1875872-1875967:1:exon

LOC116150638
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150638
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <2140389..2141186
location: region:2140389-2141186:1
so has part: feature:2140389-2141186:1:exon
subclass of: SO_0000010

116150638
type: Gene
SIO_000068: ncbigene

position:2140389:1
position: 2140389
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2141186:1
position: 2141186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2140389-2141186:1:exon

LOC116150638
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150638
product: serine-rich adhesin for platelets-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444963.1
SIO_010081: LOC116150638
subclass of: SO_0000673
so part of: LOC116150638
location: <2140389..2141186
location: region:2140389-2141186:1
so has part: feature:2140389-2141186:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2140389-2141186:1:exon

LOC116150638
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150638
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116150638
translation: SIHIYTYTHIYIHIHIHTYTYISINTCISIHIYTYTHISIHTHIHIHTYTYISINTCISIHIYTHTHIYIHIYTHIYTYIHIHTYIHIHTYTHISINTCISIHIYTYIHIYTHIHIPSTPISTPTSTSIPTSPSTPASPSTPASPSTPTPTPTSTSTSTSPPTSTPTPMSTPTSTSTSTSVSTPTFMSISTSTSVSIHIHTYTSMSINTYICTHSHIYFYNHVYICIYTHTSTSTSTSMSASPSACTSVSKSTGVSTFSACPRPI
SIO_010081: LOC116150638
subclass of: SO_0000673
so part of: LOC116150638
location: <2140389..2141186
location: region:2140389-2141186:1
so has part: feature:2140389-2141186:1:exon

XP_031300823.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2140389-2141186:1:exon

VWC2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: VWC2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2199411..2244674
location: region:2199411-2244674:1
so has part: feature:2199411-2244674:1:exon
subclass of: SO_0000010

105106223
type: Gene
SIO_000068: ncbigene

position:2199411:1
position: 2199411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2244674:1
position: 2244674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2199411-2244674:1:exon

VWC2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: VWC2
product: von Willebrand factor C domain containing 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_011000061.2
SIO_010081: VWC2
subclass of: SO_0000673
so part of: VWC2
location: join(2199411..2200594,2217274..2217403,2244175..2244674)
location: region:2199411-2244674:1
so has part: feature:2199411-2200594:1:exon
so has part: feature:2217274-2217403:1:exon
so has part: feature:2244175-2244674:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2199411-2200594:1:exon

position:2200594:1
position: 2200594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2217274-2217403:1:exon

position:2217274:1
position: 2217274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2217403:1
position: 2217403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2244175-2244674:1:exon

position:2244175:1
position: 2244175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VWC2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: VWC2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: brorin
translation: MGRPPELRRGAGPAGRLPAPHGPGEQHRRPGFSGLGFRGRLSPRGTPERPGRARRRASGARMWAAAGPGGAARARARGSAVRCSLRRDGGSRCGGAPPGCDATRPSPLQPAAAGTVVVCPARRAMAAGALSSSLLLTCCLVWLCGAEMPXEKWARGERGQEKREHASRDGXGRVSELGGPARDEAAAGGGGGRDWKSRGGRAGREAWTKQKQAWAASGAWPARPPGTPPQEPPAAQDAARPEPEPTPEPPEEYAYPDYRGKGCVDEGGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERRNYCEFRGRTYQTLEEFVVSPCERCRCEASGEVLCTVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTVCHCTYEEGTWRIERQAMCTRHECRQM
SIO_010081: VWC2
subclass of: SO_0000673
so part of: VWC2
location: join(2199576..2200594,2217274..2217403,2244175..2244326)
location: region:2199576-2244326:1
so has part: feature:2199576-2200594:1:exon
so has part: feature:2217274-2217403:1:exon
so has part: feature:2244175-2244326:1:exon

XP_010998363.2
type: Protein
SIO_000068: ncbiprotein

position:2199576:1
position: 2199576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2244326:1
position: 2244326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2199576-2200594:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2217274-2217403:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2244175-2244326:1:exon

ZPBP
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ZPBP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2251540..2299900)
location: region:2251540-2299900:-1
so has part: feature:2251540-2299900:-1:exon
subclass of: SO_0000010

105106227
type: Gene
SIO_000068: ncbigene

position:2251540:-1
position: 2251540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2299900:-1
position: 2299900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2251540-2299900:-1:exon

ZPBP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZPBP
product: zona pellucida binding protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444964.1
SIO_010081: ZPBP
subclass of: SO_0000673
so part of: ZPBP
location: complement(join(2251540..2251750,2264379..2264556,2274103..2274179,2276845..2277063,2281166..2281315,2287610..2287735,2294221..2294303,2299015..2299302,2299782..2299900))
location: region:2251540-2299900:-1
so has part: feature:2299782-2299900:-1:exon
so has part: feature:2299015-2299302:-1:exon
so has part: feature:2294221-2294303:-1:exon
so has part: feature:2287610-2287735:-1:exon
so has part: feature:2281166-2281315:-1:exon
so has part: feature:2276845-2277063:-1:exon
so has part: feature:2274103-2274179:-1:exon
so has part: feature:2264379-2264556:-1:exon
so has part: feature:2251540-2251750:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2299782-2299900:-1:exon

position:2299782:-1
position: 2299782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2299015-2299302:-1:exon

position:2299015:-1
position: 2299015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2299302:-1
position: 2299302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2294221-2294303:-1:exon

position:2294221:-1
position: 2294221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2294303:-1
position: 2294303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2287610-2287735:-1:exon

position:2287610:-1
position: 2287610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2287735:-1
position: 2287735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2281166-2281315:-1:exon

position:2281166:-1
position: 2281166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2281315:-1
position: 2281315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2276845-2277063:-1:exon

position:2276845:-1
position: 2276845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2277063:-1
position: 2277063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2274103-2274179:-1:exon

position:2274103:-1
position: 2274103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2274179:-1
position: 2274179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2264379-2264556:-1:exon

position:2264379:-1
position: 2264379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2264556:-1
position: 2264556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2251540-2251750:-1:exon

position:2251750:-1
position: 2251750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZPBP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZPBP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zona pellucida-binding protein 1
translation: MPAVYQKPPYEAEVKTVAKPTGPQLGRPGAQRVHRAARATPPLLRPLPPPRPELGVLLAFRPSPPTSGPPRRLRRAVGARRPNDLRADGGQAAVGAAGVVAAVPRPARRAGGAPPLRSRRRRRPPCSPPPCCRPPSVGDLLRLPRGFRYTQDSAKIVGSPGFPVKVYVLLHRKSPHVLCVTQQLRNSELVDPSFQWHGPKGKIVSENSTTQITSTGSLVFQNFEESMSGVYTCFLQYKPTVEAVVRNLPLKYVIYAYREPHSYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEVSLLKSECHRVKMQRAGLQNELFFTFSVSSVDTDKGPKPCTGHNCESSKRLAKAKNLIERFFNQQVEVVGRRAESLPEIYHIEGTLQMVWINRCFPGFGINVLKHPKCPECCVICSPGSYNPRDGTHCLQCNGSLVFGAKACL
SIO_010081: ZPBP
subclass of: SO_0000673
so part of: ZPBP
location: complement(join(2251656..2251750,2264379..2264556,2274103..2274179,2276845..2277063,2281166..2281315,2287610..2287735,2294221..2294303,2299015..2299302,2299782..2299900))
location: region:2251656-2299900:-1
so has part: feature:2299782-2299900:-1:exon
so has part: feature:2299015-2299302:-1:exon
so has part: feature:2294221-2294303:-1:exon
so has part: feature:2287610-2287735:-1:exon
so has part: feature:2281166-2281315:-1:exon
so has part: feature:2276845-2277063:-1:exon
so has part: feature:2274103-2274179:-1:exon
so has part: feature:2264379-2264556:-1:exon
so has part: feature:2251656-2251750:-1:exon

XP_031300824.1
type: Protein
SIO_000068: ncbiprotein

position:2251656:-1
position: 2251656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2299782-2299900:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2299015-2299302:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2294221-2294303:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2287610-2287735:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2281166-2281315:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2276845-2277063:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2274103-2274179:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2264379-2264556:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2251656-2251750:-1:exon

SPATA48
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SPATA48
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2300145..2334478
location: region:2300145-2334478:1
so has part: feature:2300145-2334478:1:exon
subclass of: SO_0000010

105106228
type: Gene
SIO_000068: ncbigene

position:2300145:1
position: 2300145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2334478:1
position: 2334478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2300145-2334478:1:exon

SPATA48
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SPATA48
product: spermatogenesis associated 48
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031444993.1
SIO_010081: SPATA48
subclass of: SO_0000673
so part of: SPATA48
location: join(2300145..2302478,2305616..2305713,2310851..2310927,2313376..2313514,2314404..2314471,2320098..2320139,2321436..2321543,2329853..2329960,2334284..2334478)
location: region:2300145-2334478:1
so has part: feature:2300145-2302478:1:exon
so has part: feature:2305616-2305713:1:exon
so has part: feature:2310851-2310927:1:exon
so has part: feature:2313376-2313514:1:exon
so has part: feature:2314404-2314471:1:exon
so has part: feature:2320098-2320139:1:exon
so has part: feature:2321436-2321543:1:exon
so has part: feature:2329853-2329960:1:exon
so has part: feature:2334284-2334478:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2300145-2302478:1:exon

position:2302478:1
position: 2302478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2305616-2305713:1:exon

position:2305616:1
position: 2305616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2305713:1
position: 2305713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2310851-2310927:1:exon

position:2310851:1
position: 2310851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2310927:1
position: 2310927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2313376-2313514:1:exon

position:2313376:1
position: 2313376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2313514:1
position: 2313514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2314404-2314471:1:exon

position:2314404:1
position: 2314404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2314471:1
position: 2314471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2320098-2320139:1:exon

position:2320098:1
position: 2320098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2320139:1
position: 2320139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2321436-2321543:1:exon

position:2321436:1
position: 2321436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2321543:1
position: 2321543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2329853-2329960:1:exon

position:2329853:1
position: 2329853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2329960:1
position: 2329960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2334284-2334478:1:exon

position:2334284:1
position: 2334284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SPATA48
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SPATA48
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: spermatogenesis-associated protein 48
translation: MALDWQHAPGKISIAEPSFLSGAKAVENRDYPHYCQLLRKMNMPFVRGVEDRHDCGRIEKKGSPAFLKFQPHPPSVLPDYHLHYPHPPPPGPGYPLFPLRDDVPLGDPCSGFLSPGGDAELRPGVGRSVPSLADVSDVKPQHRVPRPDTGFQTKLKREKVLLEELQQDRRWNSRAVPDVSIRARLGGWTSPVKVTPLQPRREGCSVNHTYTFDEDAARTDDGELLLQPNKKSNAKSSFYKSSTQKAYEVVPWDKMIPPKLDPEETTVEKAADLVSQCFTLKRYEPSPAITQMVGGLWDRFQTRSFLAPVKPVNFVSPSSRSKYVPLYTGCVQSTDADDLDNPWGDITSLAKPRSSEILRTTASRSAHMPGYAGKVHFAATHPANSDIPSTTPSPDSEVQSVLRQATVVDVFRHQAPLSRMVTTVKPYNPFNKKENGTIGY
SIO_010081: SPATA48
subclass of: SO_0000673
so part of: SPATA48
location: join(2301920..2302478,2305616..2305713,2310851..2310927,2313376..2313514,2314404..2314471,2320098..2320139,2321436..2321543,2329853..2329960,2334284..2334407)
location: region:2301920-2334407:1
so has part: feature:2301920-2302478:1:exon
so has part: feature:2305616-2305713:1:exon
so has part: feature:2310851-2310927:1:exon
so has part: feature:2313376-2313514:1:exon
so has part: feature:2314404-2314471:1:exon
so has part: feature:2320098-2320139:1:exon
so has part: feature:2321436-2321543:1:exon
so has part: feature:2329853-2329960:1:exon
so has part: feature:2334284-2334407:1:exon

XP_031300853.1
type: Protein
SIO_000068: ncbiprotein

position:2301920:1
position: 2301920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2334407:1
position: 2334407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2301920-2302478:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2305616-2305713:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2310851-2310927:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2313376-2313514:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2314404-2314471:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2320098-2320139:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2321436-2321543:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2329853-2329960:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2334284-2334407:1:exon

IKZF1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: IKZF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2440525..2527059
location: region:2440525-2527059:1
so has part: feature:2440525-2527059:1:exon
subclass of: SO_0000010

105105294
type: Gene
SIO_000068: ncbigene

position:2440525:1
position: 2440525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2527059:1
position: 2527059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2440525-2527059:1:exon

IKZF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IKZF1
product: IKAROS family zinc finger 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444994.1
SIO_010081: IKZF1
subclass of: SO_0000673
so part of: IKZF1
location: join(2440525..2440914,2454178..2454231,2461640..2461759,2509076..2509243,2512627..2512752,2517118..2517258,2518621..2518624,2523084..2527059)
location: region:2440525-2527059:1
so has part: feature:2440525-2440914:1:exon
so has part: feature:2454178-2454231:1:exon
so has part: feature:2461640-2461759:1:exon
so has part: feature:2509076-2509243:1:exon
so has part: feature:2512627-2512752:1:exon
so has part: feature:2517118-2517258:1:exon
so has part: feature:2518621-2518624:1:exon
so has part: feature:2523084-2527059:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2440525-2440914:1:exon

position:2440914:1
position: 2440914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2454178-2454231:1:exon

position:2454178:1
position: 2454178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2454231:1
position: 2454231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2461640-2461759:1:exon

position:2461640:1
position: 2461640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2461759:1
position: 2461759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2509076-2509243:1:exon

position:2509076:1
position: 2509076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2509243:1
position: 2509243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2512627-2512752:1:exon

position:2512627:1
position: 2512627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2512752:1
position: 2512752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2517118-2517258:1:exon

position:2517118:1
position: 2517118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2517258:1
position: 2517258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2518621-2518624:1:exon

position:2518621:1
position: 2518621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2518624:1
position: 2518624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2523084-2527059:1:exon

position:2523084:1
position: 2523084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IKZF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IKZF1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: DNA-binding protein Ikaros
translation: MDGEGETEGKKGGADNLRTMDADEGQDMSQVSGKESPAVSDTADDGEEPMPVPEDLSTTSGGQHNSKSERGMGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVGKPHKCGYCGRSYKQRSSLEEHKERCHNYLQSMGLPGTLYPVIKEETNHSEMAEDLCKIGPERSLVLDRLASNVAKRKSSMPQKFVGKKGVSELPYDGGAGFEKESEAMQTHVMDQASHNAISYLGAESLRXLVQTPPAGAEAVAALGPCFPKKLDEGAAAPARGGSGPSTAAALKAKARXSSEREASPSHSCPDSTDTESNAEEQRGGLIYLTNHIGAHARNGLSVKEEQAALRPARASDGAHDALRVLGTAGEPLKVYRCEPCACSSWTTHVHHPHGLHGFRDPFECNXCGPPQPGQYEFSSHITAASTVHMS
SIO_010081: IKZF1
subclass of: SO_0000673
so part of: IKZF1
location: join(2440872..2440914,2454178..2454231,2461640..2461759,2509076..2509243,2512627..2512752,2517118..2517258,2518621..2518624,2523084..2523761)
location: region:2440872-2523761:1
so has part: feature:2440872-2440914:1:exon
so has part: feature:2454178-2454231:1:exon
so has part: feature:2461640-2461759:1:exon
so has part: feature:2509076-2509243:1:exon
so has part: feature:2512627-2512752:1:exon
so has part: feature:2517118-2517258:1:exon
so has part: feature:2518621-2518624:1:exon
so has part: feature:2523084-2523761:1:exon

XP_031300854.1
type: Protein
SIO_000068: ncbiprotein

position:2440872:1
position: 2440872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2523761:1
position: 2523761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2440872-2440914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2454178-2454231:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2461640-2461759:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2509076-2509243:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2512627-2512752:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2517118-2517258:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2518621-2518624:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2523084-2523761:1:exon

FIGNL1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FIGNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2544813..2550044)
location: region:2544813-2550044:-1
so has part: feature:2544813-2550044:-1:exon
subclass of: SO_0000010

105105293
type: Gene
SIO_000068: ncbigene

position:2544813:-1
position: 2544813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2550044:-1
position: 2550044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2544813-2550044:-1:exon

FIGNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FIGNL1
product: fidgetin like 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_031444996.1
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(join(2544813..2547463,2548022..2548149,2549971..2550044))
location: region:2544813-2550044:-1
so has part: feature:2549971-2550044:-1:exon
so has part: feature:2548022-2548149:-1:exon
so has part: feature:2544813-2547463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2549971-2550044:-1:exon

position:2549971:-1
position: 2549971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2548022-2548149:-1:exon

position:2548022:-1
position: 2548022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2548149:-1
position: 2548149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2544813-2547463:-1:exon

position:2547463:-1
position: 2547463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FIGNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FIGNL1
product: fidgetin like 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_010999072.2
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(join(2544813..2547463,2548022..2548149,2549211..2549564))
location: region:2544813-2549564:-1
so has part: feature:2549211-2549564:-1:exon
so has part: feature:2548022-2548149:-1:exon
so has part: feature:2544813-2547463:-1:exon

position:2549564:-1
position: 2549564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2549211-2549564:-1:exon

position:2549211:-1
position: 2549211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2548022-2548149:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2544813-2547463:-1:exon

FIGNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FIGNL1
product: fidgetin like 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031444995.1
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(join(2544813..2547463,2548022..2548149,2549170..2549564))
location: region:2544813-2549564:-1
so has part: feature:2549170-2549564:-1:exon
so has part: feature:2548022-2548149:-1:exon
so has part: feature:2544813-2547463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2549170-2549564:-1:exon

position:2549170:-1
position: 2549170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2548022-2548149:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2544813-2547463:-1:exon

FIGNL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FIGNL1
product: fidgetin like 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031444997.1
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(join(2544813..2547463,2548022..2548149,2548841..2549129))
location: region:2544813-2549129:-1
so has part: feature:2548841-2549129:-1:exon
so has part: feature:2548022-2548149:-1:exon
so has part: feature:2544813-2547463:-1:exon

position:2549129:-1
position: 2549129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2548841-2549129:-1:exon

position:2548841:-1
position: 2548841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2548022-2548149:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2544813-2547463:-1:exon

FIGNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FIGNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fidgetin-like protein 1
translation: MQAPCSRSVHLGEWQKNYFAVASGTCTAGQKADAYRAQILRIQYARAASELSPVCAARLFKKYAEKYSSVMDSDNAETGLNNYAEDILAQARSQQSDSDKWKSGLSVSHVFRMQKVQEMMQAGRRLRDSELAPADASAVIHKAAAVSDVAQFGVCGGSADSDPRTDSARGTARTQDIPESSASLKGPQSVQPPPVTDTPKMSPAVSVPFGESVTAKSYAKPLFASVRKEDDSSPKGARGLNVFSSDQSRFPLACEGPREGTSAPYGSGTTDAHSAPALRTAFGKTDDDSPREESGLPAFRTAREQLWAEQRRQQRAAQRAPGCSHGGVKKSLGAGRSRGIFGKFVPPVPKQDGGEQSGGVPGRPRGAGRVEAAHPVDERLKNLEPKMIELIMSEVMDQGPPVSWDDIAGLEFAKATIKEVVVWPMVRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFCISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAATSAEDRVLVVGATNRPQEIDEAARRRLAKRLYIPLPEAPAREQIVTSLMSRERCQLSAEEVQRVVQRSQGFSGADMTQLCREASLGPIRSLQAADIATVTPDQVRPIAYSDFENAFRTVRPSVSPKDLELYEDWNRTFGCGQ
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(2545417..2547453)
location: region:2545417-2547453:-1
so has part: feature:2545417-2547453:-1:exon

XP_010997374.2
type: Protein
SIO_000068: ncbiprotein

position:2545417:-1
position: 2545417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2547453:-1
position: 2547453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2545417-2547453:-1:exon

FIGNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FIGNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fidgetin-like protein 1
translation: MQAPCSRSVHLGEWQKNYFAVASGTCTAGQKADAYRAQILRIQYARAASELSPVCAARLFKKYAEKYSSVMDSDNAETGLNNYAEDILAQARSQQSDSDKWKSGLSVSHVFRMQKVQEMMQAGRRLRDSELAPADASAVIHKAAAVSDVAQFGVCGGSADSDPRTDSARGTARTQDIPESSASLKGPQSVQPPPVTDTPKMSPAVSVPFGESVTAKSYAKPLFASVRKEDDSSPKGARGLNVFSSDQSRFPLACEGPREGTSAPYGSGTTDAHSAPALRTAFGKTDDDSPREESGLPAFRTAREQLWAEQRRQQRAAQRAPGCSHGGVKKSLGAGRSRGIFGKFVPPVPKQDGGEQSGGVPGRPRGAGRVEAAHPVDERLKNLEPKMIELIMSEVMDQGPPVSWDDIAGLEFAKATIKEVVVWPMVRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFCISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAATSAEDRVLVVGATNRPQEIDEAARRRLAKRLYIPLPEAPAREQIVTSLMSRERCQLSAEEVQRVVQRSQGFSGADMTQLCREASLGPIRSLQAADIATVTPDQVRPIAYSDFENAFRTVRPSVSPKDLELYEDWNRTFGCGQ
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(2545417..2547453)
location: region:2545417-2547453:-1
so has part: feature:2545417-2547453:-1:exon

XP_031300855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2545417-2547453:-1:exon

FIGNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FIGNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fidgetin-like protein 1
translation: MQAPCSRSVHLGEWQKNYFAVASGTCTAGQKADAYRAQILRIQYARAASELSPVCAARLFKKYAEKYSSVMDSDNAETGLNNYAEDILAQARSQQSDSDKWKSGLSVSHVFRMQKVQEMMQAGRRLRDSELAPADASAVIHKAAAVSDVAQFGVCGGSADSDPRTDSARGTARTQDIPESSASLKGPQSVQPPPVTDTPKMSPAVSVPFGESVTAKSYAKPLFASVRKEDDSSPKGARGLNVFSSDQSRFPLACEGPREGTSAPYGSGTTDAHSAPALRTAFGKTDDDSPREESGLPAFRTAREQLWAEQRRQQRAAQRAPGCSHGGVKKSLGAGRSRGIFGKFVPPVPKQDGGEQSGGVPGRPRGAGRVEAAHPVDERLKNLEPKMIELIMSEVMDQGPPVSWDDIAGLEFAKATIKEVVVWPMVRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFCISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAATSAEDRVLVVGATNRPQEIDEAARRRLAKRLYIPLPEAPAREQIVTSLMSRERCQLSAEEVQRVVQRSQGFSGADMTQLCREASLGPIRSLQAADIATVTPDQVRPIAYSDFENAFRTVRPSVSPKDLELYEDWNRTFGCGQ
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(2545417..2547453)
location: region:2545417-2547453:-1
so has part: feature:2545417-2547453:-1:exon

XP_031300856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2545417-2547453:-1:exon

FIGNL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FIGNL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fidgetin-like protein 1
translation: MQAPCSRSVHLGEWQKNYFAVASGTCTAGQKADAYRAQILRIQYARAASELSPVCAARLFKKYAEKYSSVMDSDNAETGLNNYAEDILAQARSQQSDSDKWKSGLSVSHVFRMQKVQEMMQAGRRLRDSELAPADASAVIHKAAAVSDVAQFGVCGGSADSDPRTDSARGTARTQDIPESSASLKGPQSVQPPPVTDTPKMSPAVSVPFGESVTAKSYAKPLFASVRKEDDSSPKGARGLNVFSSDQSRFPLACEGPREGTSAPYGSGTTDAHSAPALRTAFGKTDDDSPREESGLPAFRTAREQLWAEQRRQQRAAQRAPGCSHGGVKKSLGAGRSRGIFGKFVPPVPKQDGGEQSGGVPGRPRGAGRVEAAHPVDERLKNLEPKMIELIMSEVMDQGPPVSWDDIAGLEFAKATIKEVVVWPMVRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFCISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAATSAEDRVLVVGATNRPQEIDEAARRRLAKRLYIPLPEAPAREQIVTSLMSRERCQLSAEEVQRVVQRSQGFSGADMTQLCREASLGPIRSLQAADIATVTPDQVRPIAYSDFENAFRTVRPSVSPKDLELYEDWNRTFGCGQ
SIO_010081: FIGNL1
subclass of: SO_0000673
so part of: FIGNL1
location: complement(2545417..2547453)
location: region:2545417-2547453:-1
so has part: feature:2545417-2547453:-1:exon

XP_031300857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2545417-2547453:-1:exon

DDC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: DDC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2557157..2589983)
location: region:2557157-2589983:-1
so has part: feature:2557157-2589983:-1:exon
subclass of: SO_0000010

105105292
type: Gene
SIO_000068: ncbigene

position:2557157:-1
position: 2557157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2589983:-1
position: 2589983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2557157-2589983:-1:exon

DDC
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: DDC
product: dopa decarboxylase
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_031444998.1
SIO_010081: DDC
subclass of: SO_0000673
so part of: DDC
location: complement(join(2557157..2557668,2558368..2558581,2560894..2560995,2562714..2562812,2564573..2564592,2565456..2565532,2567089..2567156,2570933..2571027,2574604..2574670,2577731..2577881,2578807..2578941,2585640..2585759,2586622..2586735,2589783..2589983))
location: region:2557157-2589983:-1
so has part: feature:2589783-2589983:-1:exon
so has part: feature:2586622-2586735:-1:exon
so has part: feature:2585640-2585759:-1:exon
so has part: feature:2578807-2578941:-1:exon
so has part: feature:2577731-2577881:-1:exon
so has part: feature:2574604-2574670:-1:exon
so has part: feature:2570933-2571027:-1:exon
so has part: feature:2567089-2567156:-1:exon
so has part: feature:2565456-2565532:-1:exon
so has part: feature:2564573-2564592:-1:exon
so has part: feature:2562714-2562812:-1:exon
so has part: feature:2560894-2560995:-1:exon
so has part: feature:2558368-2558581:-1:exon
so has part: feature:2557157-2557668:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2589783-2589983:-1:exon

position:2589783:-1
position: 2589783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2586622-2586735:-1:exon

position:2586622:-1
position: 2586622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2586735:-1
position: 2586735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2585640-2585759:-1:exon

position:2585640:-1
position: 2585640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2585759:-1
position: 2585759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2578807-2578941:-1:exon

position:2578807:-1
position: 2578807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2578941:-1
position: 2578941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2577731-2577881:-1:exon

position:2577731:-1
position: 2577731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2577881:-1
position: 2577881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2574604-2574670:-1:exon

position:2574604:-1
position: 2574604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2574670:-1
position: 2574670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2570933-2571027:-1:exon

position:2570933:-1
position: 2570933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2571027:-1
position: 2571027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2567089-2567156:-1:exon

position:2567089:-1
position: 2567089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2567156:-1
position: 2567156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2565456-2565532:-1:exon

position:2565456:-1
position: 2565456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2565532:-1
position: 2565532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2564573-2564592:-1:exon

position:2564573:-1
position: 2564573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2564592:-1
position: 2564592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2562714-2562812:-1:exon

position:2562714:-1
position: 2562714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2562812:-1
position: 2562812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2560894-2560995:-1:exon

position:2560894:-1
position: 2560894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2560995:-1
position: 2560995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2558368-2558581:-1:exon

position:2558368:-1
position: 2558368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2558581:-1
position: 2558581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2557157-2557668:-1:exon

position:2557668:-1
position: 2557668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DDC
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: DDC
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: aromatic-L-amino-acid decarboxylase
translation: MNADEFRRRGKEMVDYVADYLEGIEARQVYPDVEPGYLRPLIPPTAPQEPDTFEDIINDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGRMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVTRRLQTASPGLTQAAVMEKLVAYASDQAHSSVEERAGLIGGVKLKAIPSDGKFCCELSALQEALERDKAPADFPFFVVATLGTTSCCSFDNLLEVGPVCHKEGVWLHVDAAYAGSAFICPEFRHLLDGVEFADSFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFKLDPVYLKHSHQDSGLITDYRHWQLPLGRRFRSLKMWFVFRLYGVTGLQAYIRKHVQLSHEFEFLVRQDPRFEICAEVTLGLVCFRLKGPNSRNEALLERINSARKIHLVPCHLRDQFVLRFAICSRTVESAHVRLAWEHIRGLAAELLGAEKE
SIO_010081: DDC
subclass of: SO_0000673
so part of: DDC
location: complement(join(2558381..2558581,2560894..2560995,2562714..2562812,2564573..2564592,2565456..2565532,2567089..2567156,2570933..2571027,2574604..2574670,2577731..2577881,2578807..2578941,2585640..2585759,2586622..2586735,2589783..2589983))
location: region:2558381-2589983:-1
so has part: feature:2589783-2589983:-1:exon
so has part: feature:2586622-2586735:-1:exon
so has part: feature:2585640-2585759:-1:exon
so has part: feature:2578807-2578941:-1:exon
so has part: feature:2577731-2577881:-1:exon
so has part: feature:2574604-2574670:-1:exon
so has part: feature:2570933-2571027:-1:exon
so has part: feature:2567089-2567156:-1:exon
so has part: feature:2565456-2565532:-1:exon
so has part: feature:2564573-2564592:-1:exon
so has part: feature:2562714-2562812:-1:exon
so has part: feature:2560894-2560995:-1:exon
so has part: feature:2558381-2558581:-1:exon

XP_031300858.1
type: Protein
SIO_000068: ncbiprotein

position:2558381:-1
position: 2558381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2589783-2589983:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2586622-2586735:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2585640-2585759:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2578807-2578941:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2577731-2577881:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2574604-2574670:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2570933-2571027:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2567089-2567156:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2565456-2565532:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2564573-2564592:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2562714-2562812:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2560894-2560995:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2558381-2558581:-1:exon

GRB10
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GRB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2604684..2745508)
location: region:2604684-2745508:-1
so has part: feature:2604684-2745508:-1:exon
subclass of: SO_0000010

105105291
type: Gene
SIO_000068: ncbigene

position:2604684:-1
position: 2604684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2745508:-1
position: 2745508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2604684-2745508:-1:exon

GRB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GRB10
product: growth factor receptor bound protein 10, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_031445003.1
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2604684..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2714513..2714607,2721594..2721752,2745285..2745508))
location: region:2604684-2745508:-1
so has part: feature:2745285-2745508:-1:exon
so has part: feature:2721594-2721752:-1:exon
so has part: feature:2714513-2714607:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2604684-2607463:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745285-2745508:-1:exon

position:2745285:-1
position: 2745285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2721594-2721752:-1:exon

position:2721594:-1
position: 2721594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2721752:-1
position: 2721752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2714513-2714607:-1:exon

position:2714513:-1
position: 2714513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2714607:-1
position: 2714607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2682115-2682334:-1:exon

position:2682115:-1
position: 2682115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2682334:-1
position: 2682334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2677151-2677292:-1:exon

position:2677151:-1
position: 2677151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2677292:-1
position: 2677292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2661407-2661563:-1:exon

position:2661407:-1
position: 2661407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2661563:-1
position: 2661563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2657186-2657301:-1:exon

position:2657186:-1
position: 2657186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2657301:-1
position: 2657301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2656190-2656258:-1:exon

position:2656190:-1
position: 2656190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2656258:-1
position: 2656258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2654484-2654621:-1:exon

position:2654484:-1
position: 2654484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2654621:-1
position: 2654621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2653331-2653441:-1:exon

position:2653331:-1
position: 2653331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2653441:-1
position: 2653441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2651807-2651905:-1:exon

position:2651807:-1
position: 2651807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2651905:-1
position: 2651905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2645462-2645539:-1:exon

position:2645462:-1
position: 2645462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2645539:-1
position: 2645539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2644017-2644133:-1:exon

position:2644017:-1
position: 2644017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2644133:-1
position: 2644133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2643240-2643306:-1:exon

position:2643240:-1
position: 2643240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2643306:-1
position: 2643306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2642946-2643033:-1:exon

position:2642946:-1
position: 2642946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2643033:-1
position: 2643033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2638352-2638445:-1:exon

position:2638352:-1
position: 2638352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2638445:-1
position: 2638445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2604684-2607463:-1:exon

position:2607463:-1
position: 2607463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GRB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GRB10
product: growth factor receptor bound protein 10, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031444999.1
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2604684..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2714513..2714607,2721594..2721749,2744786..2745100))
location: region:2604684-2745100:-1
so has part: feature:2744786-2745100:-1:exon
so has part: feature:2721594-2721749:-1:exon
so has part: feature:2714513-2714607:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2604684-2607463:-1:exon

position:2745100:-1
position: 2745100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2744786-2745100:-1:exon

position:2744786:-1
position: 2744786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2721594-2721749:-1:exon

position:2721749:-1
position: 2721749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2714513-2714607:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2604684-2607463:-1:exon

GRB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GRB10
product: growth factor receptor bound protein 10, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_031445001.1
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2604684..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2704879..2704969,2714513..2714607,2721594..2721749,2744560..2744742))
location: region:2604684-2744742:-1
so has part: feature:2744560-2744742:-1:exon
so has part: feature:2721594-2721749:-1:exon
so has part: feature:2714513-2714607:-1:exon
so has part: feature:2704879-2704969:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2604684-2607463:-1:exon

position:2744742:-1
position: 2744742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2744560-2744742:-1:exon

position:2744560:-1
position: 2744560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2721594-2721749:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2714513-2714607:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2704879-2704969:-1:exon

position:2704879:-1
position: 2704879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2704969:-1
position: 2704969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2604684-2607463:-1:exon

GRB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GRB10
product: growth factor receptor bound protein 10, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_031445000.1
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2604684..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2704879..2704969,2712332..2712519))
location: region:2604684-2712519:-1
so has part: feature:2712332-2712519:-1:exon
so has part: feature:2704879-2704969:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2604684-2607463:-1:exon

position:2712519:-1
position: 2712519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2712332-2712519:-1:exon

position:2712332:-1
position: 2712332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2704879-2704969:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2604684-2607463:-1:exon

GRB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GRB10
product: growth factor receptor bound protein 10, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_031445002.1
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2604684..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2691826..2692041,2692417..2692767))
location: region:2604684-2692767:-1
so has part: feature:2692417-2692767:-1:exon
so has part: feature:2691826-2692041:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2604684-2607463:-1:exon

position:2692767:-1
position: 2692767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2692417-2692767:-1:exon

position:2692417:-1
position: 2692417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2691826-2692041:-1:exon

position:2691826:-1
position: 2691826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2692041:-1
position: 2692041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2604684-2607463:-1:exon

GRB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GRB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: growth factor receptor-bound protein 10 isoform X1
translation: MQLPALPSAARNACLAAALERVRRAVRKGGLGLARHAEPEDGAAGSGGPVTLTVTSRCSLPGSSQSSRAAARHAEPGRASSRCRDAVRVIWRQGRSYGCSWLSRLLLAPSLLPEDDVDLEALVNDMSLSLESLCSACGMQSETTPLLQNGQHARGPPPPSAARSNQPQLSPRQKVQRSQPVHILAARRLQEEDQQFRTSSLPAIPNPFPELCGPESPPVLAPGSLPPRQDVAKQDVRVFSEDGTSRVVEILADTTARDLCQWLVYRSHCVDDNSWALVECHPHLGLERCLEDHELVAQVEGTMASESKFLFRKNYAKYEFFKNPTNFFPEQMVTWCQQSNGSQSQLLQTFLNASSCPEIQGFLHVRELGRRSWKKLYVCLRRSGLYHSTKGASKEPRHLQLLADLEDSGMFSLTAGRKQYGAPTDFGFCIKPNKVRSEAKELRLLCAEDEQGRTCWMTAFRLLKYGVLLYENYRVPQQRKPTLSPFSTPVRSVSENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRLGALGSQSPLLPSTLSTVIHRTQHWFHGRISREESHRLIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEEDGKLFFSLDEGKTRFSDLIQLVDFYQLNRGVLPCKLKHHCIRVAL
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2607317..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2714513..2714607,2721594..2721749,2744786..2744874))
location: region:2607317-2744874:-1
so has part: feature:2744786-2744874:-1:exon
so has part: feature:2721594-2721749:-1:exon
so has part: feature:2714513-2714607:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2607317-2607463:-1:exon

XP_031300859.1
type: Protein
SIO_000068: ncbiprotein

position:2607317:-1
position: 2607317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2744874:-1
position: 2744874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2744786-2744874:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2721594-2721749:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2714513-2714607:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2607317-2607463:-1:exon

GRB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GRB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: growth factor receptor-bound protein 10 isoform X3
translation: MAVAGCPDSFLHHPYYQDQAEQTSPHRPQGLAGPAFPAQSERLANHQEDDVDLEALVNDMSLSLESLCSACGMQSETTPLLQNGQHARGPPPPSAARSNQPQLSPRQKVQRSQPVHILAARRLQEEDQQFRTSSLPAIPNPFPELCGPESPPVLAPGSLPPRQDVAKQDVRVFSEDGTSRVVEILADTTARDLCQWLVYRSHCVDDNSWALVECHPHLGLERCLEDHELVAQVEGTMASESKFLFRKNYAKYEFFKNPTNFFPEQMVTWCQQSNGSQSQLLQTFLNASSCPEIQGFLHVRELGRRSWKKLYVCLRRSGLYHSTKGASKEPRHLQLLADLEDSGMFSLTAGRKQYGAPTDFGFCIKPNKVRSEAKELRLLCAEDEQGRTCWMTAFRLLKYGVLLYENYRVPQQRKPTLSPFSTPVRSVSENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRLGALGSQSPLLPSTLSTVIHRTQHWFHGRISREESHRLIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEEDGKLFFSLDEGKTRFSDLIQLVDFYQLNRGVLPCKLKHHCIRVAL
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2607317..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2704879..2704969,2714513..2714563))
location: region:2607317-2714563:-1
so has part: feature:2714513-2714563:-1:exon
so has part: feature:2704879-2704969:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2607317-2607463:-1:exon

XP_031300861.1
type: Protein
SIO_000068: ncbiprotein

position:2714563:-1
position: 2714563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2714513-2714563:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2704879-2704969:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2607317-2607463:-1:exon

GRB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GRB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: growth factor receptor-bound protein 10 isoform X2
translation: MLTEHHPDATCDVGADRAWWTWERWQIKVDQAEQTSPHRPQGLAGPAFPAQSERLANHQEDDVDLEALVNDMSLSLESLCSACGMQSETTPLLQNGQHARGPPPPSAARSNQPQLSPRQKVQRSQPVHILAARRLQEEDQQFRTSSLPAIPNPFPELCGPESPPVLAPGSLPPRQDVAKQDVRVFSEDGTSRVVEILADTTARDLCQWLVYRSHCVDDNSWALVECHPHLGLERCLEDHELVAQVEGTMASESKFLFRKNYAKYEFFKNPTNFFPEQMVTWCQQSNGSQSQLLQTFLNASSCPEIQGFLHVRELGRRSWKKLYVCLRRSGLYHSTKGASKEPRHLQLLADLEDSGMFSLTAGRKQYGAPTDFGFCIKPNKVRSEAKELRLLCAEDEQGRTCWMTAFRLLKYGVLLYENYRVPQQRKPTLSPFSTPVRSVSENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRLGALGSQSPLLPSTLSTVIHRTQHWFHGRISREESHRLIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEEDGKLFFSLDEGKTRFSDLIQLVDFYQLNRGVLPCKLKHHCIRVAL
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2607317..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682334,2704879..2704969,2712332..2712418))
location: region:2607317-2712418:-1
so has part: feature:2712332-2712418:-1:exon
so has part: feature:2704879-2704969:-1:exon
so has part: feature:2682115-2682334:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2607317-2607463:-1:exon

XP_031300860.1
type: Protein
SIO_000068: ncbiprotein

position:2712418:-1
position: 2712418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2712332-2712418:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2704879-2704969:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2682115-2682334:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2607317-2607463:-1:exon

GRB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GRB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: growth factor receptor-bound protein 10 isoform X4
translation: MSLSLESLCSACGMQSETTPLLQNGQHARGPPPPSAARSNQPQLSPRQKVQRSQPVHILAARRLQEEDQQFRTSSLPAIPNPFPELCGPESPPVLAPGSLPPRQDVAKQDVRVFSEDGTSRVVEILADTTARDLCQWLVYRSHCVDDNSWALVECHPHLGLERCLEDHELVAQVEGTMASESKFLFRKNYAKYEFFKNPTNFFPEQMVTWCQQSNGSQSQLLQTFLNASSCPEIQGFLHVRELGRRSWKKLYVCLRRSGLYHSTKGASKEPRHLQLLADLEDSGMFSLTAGRKQYGAPTDFGFCIKPNKVRSEAKELRLLCAEDEQGRTCWMTAFRLLKYGVLLYENYRVPQQRKPTLSPFSTPVRSVSENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRLGALGSQSPLLPSTLSTVIHRTQHWFHGRISREESHRLIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEEDGKLFFSLDEGKTRFSDLIQLVDFYQLNRGVLPCKLKHHCIRVAL
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2607317..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682299))
location: region:2607317-2682299:-1
so has part: feature:2682115-2682299:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2607317-2607463:-1:exon

XP_031300862.1
type: Protein
SIO_000068: ncbiprotein

position:2682299:-1
position: 2682299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2682115-2682299:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2607317-2607463:-1:exon

GRB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GRB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: growth factor receptor-bound protein 10 isoform X4
translation: MSLSLESLCSACGMQSETTPLLQNGQHARGPPPPSAARSNQPQLSPRQKVQRSQPVHILAARRLQEEDQQFRTSSLPAIPNPFPELCGPESPPVLAPGSLPPRQDVAKQDVRVFSEDGTSRVVEILADTTARDLCQWLVYRSHCVDDNSWALVECHPHLGLERCLEDHELVAQVEGTMASESKFLFRKNYAKYEFFKNPTNFFPEQMVTWCQQSNGSQSQLLQTFLNASSCPEIQGFLHVRELGRRSWKKLYVCLRRSGLYHSTKGASKEPRHLQLLADLEDSGMFSLTAGRKQYGAPTDFGFCIKPNKVRSEAKELRLLCAEDEQGRTCWMTAFRLLKYGVLLYENYRVPQQRKPTLSPFSTPVRSVSENSLVAMDFSGQTGRVIENPAEAQSAALEEGHAWRKRSTRLGALGSQSPLLPSTLSTVIHRTQHWFHGRISREESHRLIKQQGLVDGLFLLRDSQSNPKAFVLTLCHHQKIKNFQILPCEEDGKLFFSLDEGKTRFSDLIQLVDFYQLNRGVLPCKLKHHCIRVAL
SIO_010081: GRB10
subclass of: SO_0000673
so part of: GRB10
location: complement(join(2607317..2607463,2638352..2638445,2642946..2643033,2643240..2643306,2644017..2644133,2645462..2645539,2651807..2651905,2653331..2653441,2654484..2654621,2656190..2656258,2657186..2657301,2661407..2661563,2677151..2677292,2682115..2682299))
location: region:2607317-2682299:-1
so has part: feature:2682115-2682299:-1:exon
so has part: feature:2677151-2677292:-1:exon
so has part: feature:2661407-2661563:-1:exon
so has part: feature:2657186-2657301:-1:exon
so has part: feature:2656190-2656258:-1:exon
so has part: feature:2654484-2654621:-1:exon
so has part: feature:2653331-2653441:-1:exon
so has part: feature:2651807-2651905:-1:exon
so has part: feature:2645462-2645539:-1:exon
so has part: feature:2644017-2644133:-1:exon
so has part: feature:2643240-2643306:-1:exon
so has part: feature:2642946-2643033:-1:exon
so has part: feature:2638352-2638445:-1:exon
so has part: feature:2607317-2607463:-1:exon

XP_031300863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2682115-2682299:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2677151-2677292:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2661407-2661563:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2657186-2657301:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2656190-2656258:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2654484-2654621:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2653331-2653441:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2651807-2651905:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2645462-2645539:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2644017-2644133:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2643240-2643306:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2642946-2643033:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2638352-2638445:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2607317-2607463:-1:exon

LOC105101489
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101489
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2745716..2754702
location: region:2745716-2754702:1
so has part: feature:2745716-2754702:1:exon
subclass of: SO_0000011

105101489
type: Gene
SIO_000068: ncbigene

position:2745716:1
position: 2745716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2754702:1
position: 2754702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004134372.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2745716..2746270,2749518..2749633,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2745716-2754702:1
so has part: feature:2745716-2746270:1:exon
so has part: feature:2749518-2749633:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2746270:1:exon

position:2746270:1
position: 2746270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2749518-2749633:1:exon

position:2749518:1
position: 2749518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2749633:1
position: 2749633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2750140-2750264:1:exon

position:2750140:1
position: 2750140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2750264:1
position: 2750264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2751165-2751424:1:exon

position:2751165:1
position: 2751165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2751424:1
position: 2751424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2752575-2754702:1:exon

position:2752575:1
position: 2752575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_838292.2
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2745716..2746270,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2745716-2754702:1
so has part: feature:2745716-2746270:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2746270:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004134374.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2745716..2745984,2746178..2746270,2749518..2749633,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2745716-2754702:1
so has part: feature:2745716-2745984:1:exon
so has part: feature:2746178-2746270:1:exon
so has part: feature:2749518-2749633:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2745984:1:exon

position:2745984:1
position: 2745984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2746178-2746270:1:exon

position:2746178:1
position: 2746178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2749518-2749633:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004134376.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2745716..2745984,2746178..2746270,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2745716-2754702:1
so has part: feature:2745716-2745984:1:exon
so has part: feature:2746178-2746270:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2745984:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2746178-2746270:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_004134375.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2745716..2745984,2749518..2749633,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2745716-2754702:1
so has part: feature:2745716-2745984:1:exon
so has part: feature:2749518-2749633:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2745984:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2749518-2749633:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XR_004134371.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2745716..2745984,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2745716-2754702:1
so has part: feature:2745716-2745984:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2745716-2745984:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004134378.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2749026..2749195,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2749026-2754702:1
so has part: feature:2749026-2749195:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

position:2749026:1
position: 2749026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2749026-2749195:1:exon

position:2749195:1
position: 2749195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004134373.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2749027..2749122,2749518..2749633,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2749027-2754702:1
so has part: feature:2749027-2749122:1:exon
so has part: feature:2749518-2749633:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

position:2749027:1
position: 2749027
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2749027-2749122:1:exon

position:2749122:1
position: 2749122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2749518-2749633:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_838291.2
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2749027..2749088,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2749027-2754702:1
so has part: feature:2749027-2749088:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2749027-2749088:1:exon

position:2749088:1
position: 2749088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2752575-2754702:1:exon

LOC105101489
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101489
product: uncharacterized LOC105101489, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004134379.1
SIO_010081: LOC105101489
subclass of: SO_0000673
so part of: LOC105101489
location: join(2749099..2749122,2750140..2750264,2751165..2751424,2752575..2754702)
location: region:2749099-2754702:1
so has part: feature:2749099-2749122:1:exon
so has part: feature:2750140-2750264:1:exon
so has part: feature:2751165-2751424:1:exon
so has part: feature:2752575-2754702:1:exon

position:2749099:1
position: 2749099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2749099-2749122:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2750140-2750264:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2751165-2751424:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2752575-2754702:1:exon

LOC116150639
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150639
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2756552..2805786
location: region:2756552-2805786:1
so has part: feature:2756552-2805786:1:exon
subclass of: SO_0000010

116150639
type: Gene
SIO_000068: ncbigene

position:2756552:1
position: 2756552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2805786:1
position: 2805786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2756552-2805786:1:exon

LOC116150639
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150639
product: uncharacterized LOC116150639
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444965.1
SIO_010081: LOC116150639
subclass of: SO_0000673
so part of: LOC116150639
location: join(2756552..2756605,2757678..2757742,2757876..2758072,2758162..2758253,2758865..2759219,2800789..2801088,2802227..2802282,2802747..2803031,2805251..2805786)
location: region:2756552-2805786:1
so has part: feature:2756552-2756605:1:exon
so has part: feature:2757678-2757742:1:exon
so has part: feature:2757876-2758072:1:exon
so has part: feature:2758162-2758253:1:exon
so has part: feature:2758865-2759219:1:exon
so has part: feature:2800789-2801088:1:exon
so has part: feature:2802227-2802282:1:exon
so has part: feature:2802747-2803031:1:exon
so has part: feature:2805251-2805786:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2756552-2756605:1:exon

position:2756605:1
position: 2756605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2757678-2757742:1:exon

position:2757678:1
position: 2757678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2757742:1
position: 2757742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2757876-2758072:1:exon

position:2757876:1
position: 2757876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2758072:1
position: 2758072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2758162-2758253:1:exon

position:2758162:1
position: 2758162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2758253:1
position: 2758253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2758865-2759219:1:exon

position:2758865:1
position: 2758865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2759219:1
position: 2759219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2800789-2801088:1:exon

position:2800789:1
position: 2800789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2801088:1
position: 2801088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2802227-2802282:1:exon

position:2802227:1
position: 2802227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2802282:1
position: 2802282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2802747-2803031:1:exon

position:2802747:1
position: 2802747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2803031:1
position: 2803031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2805251-2805786:1:exon

position:2805251:1
position: 2805251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150639
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150639
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116150639
translation: MGPYFDGSSDALLRAVCTVPHPEPPFASTTPFSTDSDDCGQERPYHPLRGAGQGSECGPQASSVYTSCECIRNADSGPHPGHQDQIRHSGVGAPGLRALENQRLTGAHLPSHLLAYGVSKPIKAKNPAPRGCSPFRWTLAARDGAGLSATDEATRLSHLPGSQSEASVTDAPPGTTPRAPLPLGFPPLGAAETPSRFTVGGREDKTTRWHGHKQGTPSDGEKGVENRSEAVVPQESGPRAEPRWVRTRLLLLPAVSSHGHFPEPAVGAGAQGAGAVTGACLGEAALAPAAGWEPLRGCPLPPPRSPLVGVSFPLGFLSHTPYLGSERRKRFCKLEGKLGASIAEIRVSTPRRALGLLCCKLSTDIERGSLCCTEPEKEARRPCLGSVCPAPRGTEASPARKLDGTGGWRQTDSTQTLISARVRATGLASVPSRASVRPVGLPVSVSPNPEPVHWNFPIRRARGNRRSTQSESKFPGGGPSGSPAVDADASWVPSKIVAGAAKGVCSEPSHPHRQQE
SIO_010081: LOC116150639
subclass of: SO_0000673
so part of: LOC116150639
location: join(2756552..2756605,2757678..2757742,2757876..2758072,2758162..2758253,2758865..2759219,2800789..2801088,2802227..2802282,2802747..2803031,2805251..2805397)
location: region:2756552-2805397:1
so has part: feature:2756552-2756605:1:exon
so has part: feature:2757678-2757742:1:exon
so has part: feature:2757876-2758072:1:exon
so has part: feature:2758162-2758253:1:exon
so has part: feature:2758865-2759219:1:exon
so has part: feature:2800789-2801088:1:exon
so has part: feature:2802227-2802282:1:exon
so has part: feature:2802747-2803031:1:exon
so has part: feature:2805251-2805397:1:exon

XP_031300825.1
type: Protein
SIO_000068: ncbiprotein

position:2805397:1
position: 2805397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2756552-2756605:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2757678-2757742:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2757876-2758072:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2758162-2758253:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2758865-2759219:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2800789-2801088:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2802227-2802282:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2802747-2803031:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2805251-2805397:1:exon

COBL
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: COBL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2808218..2902703)
location: region:2808218-2902703:-1
so has part: feature:2808218-2902703:-1:exon
subclass of: SO_0000010

105101490
type: Gene
SIO_000068: ncbigene

position:2808218:-1
position: 2808218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2902703:-1
position: 2902703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2808218-2902703:-1:exon

COBL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: COBL
product: cordon-bleu WH2 repeat protein
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01073881.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; added 7 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031445004.1
SIO_010081: COBL
subclass of: SO_0000673
so part of: COBL
location: complement(join(2808218..2809472,2812290..2812556,2813180..2813299,2814182..2815887,2816937..2817028,2824580..2824889,2850164..2850330,2853917..2854054,2868115..>2868290,2878040..2878111,2879514..2879611,2884573..2884801,2887589..2887799,2892257..2892460,2902549..2902703))
location: region:2808218-2902703:-1
so has part: feature:2902549-2902703:-1:exon
so has part: feature:2892257-2892460:-1:exon
so has part: feature:2887589-2887799:-1:exon
so has part: feature:2884573-2884801:-1:exon
so has part: feature:2879514-2879611:-1:exon
so has part: feature:2878040-2878111:-1:exon
so has part: feature:2868115-2868290:-1:exon
so has part: feature:2853917-2854054:-1:exon
so has part: feature:2850164-2850330:-1:exon
so has part: feature:2824580-2824889:-1:exon
so has part: feature:2816937-2817028:-1:exon
so has part: feature:2814182-2815887:-1:exon
so has part: feature:2813180-2813299:-1:exon
so has part: feature:2812290-2812556:-1:exon
so has part: feature:2808218-2809472:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2902549-2902703:-1:exon

position:2902549:-1
position: 2902549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2892257-2892460:-1:exon

position:2892257:-1
position: 2892257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2892460:-1
position: 2892460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2887589-2887799:-1:exon

position:2887589:-1
position: 2887589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2887799:-1
position: 2887799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2884573-2884801:-1:exon

position:2884573:-1
position: 2884573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2884801:-1
position: 2884801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2879514-2879611:-1:exon

position:2879514:-1
position: 2879514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2879611:-1
position: 2879611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2878040-2878111:-1:exon

position:2878040:-1
position: 2878040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2878111:-1
position: 2878111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2868115-2868290:-1:exon

position:2868115:-1
position: 2868115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2868290:-1
position: 2868290
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2853917-2854054:-1:exon

position:2853917:-1
position: 2853917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2854054:-1
position: 2854054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2850164-2850330:-1:exon

position:2850164:-1
position: 2850164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2850330:-1
position: 2850330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2824580-2824889:-1:exon

position:2824580:-1
position: 2824580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2824889:-1
position: 2824889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2816937-2817028:-1:exon

position:2816937:-1
position: 2816937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2817028:-1
position: 2817028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2814182-2815887:-1:exon

position:2814182:-1
position: 2814182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2815887:-1
position: 2815887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2813180-2813299:-1:exon

position:2813180:-1
position: 2813180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2813299:-1
position: 2813299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2812290-2812556:-1:exon

position:2812290:-1
position: 2812290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2812556:-1
position: 2812556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2808218-2809472:-1:exon

position:2809472:-1
position: 2809472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

COBL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: COBL
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01073881.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; added 7 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: protein cordon-bleu
translation: MKARAPPPPGKPASPDVHGGWKPSRDVSPGPQQKVLNMREDLGRRVVDITVVLPSGLEKETVVNGSHAMMDLLVELCLQNHLNPSTHALEIRSSENQQPLSFKPNTLVGTLNVHTVFLKEKVPEAKVKAGPPKVPEKTVRLVVNYLRTQKAVVRVSPVVPLAAILPLICAKCGVSPEHVVLLRDDVTGDELELSKSLSELGIKELYAWDNKRETFRKSSFGSDETDKEKKKILGFFKVNKRSSSKAPQIGQPGADSDEEAKSTLRRGSNGCLTTPNSPSVNSRSTTLGPSLSLSSISGVSVKSDLKKRRAPPPPSGPRAGPPVQDKASEKVSLGSQADFQKKKRRAXAPPPRKPPPPSPLVPARTEDREEGRKGRTGVGRQVPQKPPRGAARGPPQLELPPXXPYPPPAAEAGPPGCSETGAASLASDLRPTLSLPLGPGSPCSVDGVPPVPPEAEETVSVGSCIASEDTTEDSGVMSSPSDGISLDSQHDSMKSKDKWTTDQEDCSDQDLAGTPELGPPKSPSWERSSSGGWPPRSETAASGEHEDLRLSRWPQDTLAEPEEELGEMEDRSALSNSAHGCPRDAAILDGDEEPIPVTFIGEVLDDPVDAGLFSNRNNNASSSDTGSTHDTKAPLPPCRAAPGQQPGTGRAATPNPPSPEDAGKETKPAASSTWKDVNPNKTEPQTTSAPALHTRALDAREGKARGSAPSGTPPATGRLDSQPVRETEGGANSDVSTPPSWYQRGQHPGGSYGLKYGLTTYKIVPPKSEMRCYDRGVSLSTGAIKIDELGNLVSPQAPVGRTIVPGAPSLEAEPQPIGKVKEFWRSNSTEEPLGQPTGGSAKRTPTPSTPAKPQPQEGRPRAEPTSPDPKGTVPPPHPEDGGPLEERRSWPPTAAPRPEKVTAANTAEVHFLKPQRRTSSQYMASAIAKRIGTQKVHLETRVGNDGEGSAVGAHPGAHTGSPYRSSTQDCPAGVLRNSHVPLVTASPRDQGPPGRSCGLSQRQSASNQRTRSASDPRCMPDTTSPPPPCSGDDQTPGPALVNGSRWVPVPSEPPHSPREIGTNGHAGREPLGREEKPRLLSTDALETDGTQPASIFGPKKRFRPVVQRPAPKDMSLHSALMEAIHSAGGKDGLRKIAEHSPERGPKTPSHAEADSERSALLAAIRGHRGACSLRKVSSSASEELQSFRDAVLSAHGSGPPGPEDVGAQFPAAPPPPPPPPATQTPITSRTASRASSGPLSSPGDARQALLDAIRSGTGAARLRKVPLLV
SIO_010081: COBL
subclass of: SO_0000673
so part of: COBL
location: complement(join(2809455..2809472,2812290..2812556,2813180..2813299,2814182..2815887,2816937..2817028,2824580..2824889,2850164..2850330,2853917..2854054,2868115..>2868290,2878040..2878111,2879514..2879611,2884573..2884801,2887589..2887799,2892257..2892453))
location: region:2809455-2892453:-1
so has part: feature:2892257-2892453:-1:exon
so has part: feature:2887589-2887799:-1:exon
so has part: feature:2884573-2884801:-1:exon
so has part: feature:2879514-2879611:-1:exon
so has part: feature:2878040-2878111:-1:exon
so has part: feature:2868115-2868290:-1:exon
so has part: feature:2853917-2854054:-1:exon
so has part: feature:2850164-2850330:-1:exon
so has part: feature:2824580-2824889:-1:exon
so has part: feature:2816937-2817028:-1:exon
so has part: feature:2814182-2815887:-1:exon
so has part: feature:2813180-2813299:-1:exon
so has part: feature:2812290-2812556:-1:exon
so has part: feature:2809455-2809472:-1:exon

XP_031300864.1
type: Protein
SIO_000068: ncbiprotein

position:2809455:-1
position: 2809455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2892453:-1
position: 2892453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2892257-2892453:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2887589-2887799:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2884573-2884801:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2879514-2879611:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2878040-2878111:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2868115-2868290:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2853917-2854054:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2850164-2850330:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2824580-2824889:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2816937-2817028:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2814182-2815887:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2813180-2813299:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2812290-2812556:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2809455-2809472:-1:exon

TRNAG-ACC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAG-ACC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(2844051..2844122)
location: region:2844051-2844122:-1
so has part: feature:2844051-2844122:-1:exon
subclass of: SO_0000663

116150673
type: Gene
SIO_000068: ncbigene

position:2844051:-1
position: 2844051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2844122:-1
position: 2844122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2844051-2844122:-1:exon

TRNAG-ACC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAG-ACC
product: tRNA-Gly
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glycine (anticodon ACC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(2844088..2844090),aa:Gly, seq:acc)
SIO_010081: TRNAG-ACC
subclass of: SO_0000673
so part of: TRNAG-ACC
location: complement(2844051..2844122)
location: region:2844051-2844122:-1
so has part: feature:2844051-2844122:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2844051-2844122:-1:exon

LOC116150630
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150630
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3712808..3722503)
location: region:3712808-3722503:-1
so has part: feature:3712808-3722503:-1:exon
subclass of: SO_0000011

116150630
type: Gene
SIO_000068: ncbigene

position:3712808:-1
position: 3712808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3722503:-1
position: 3722503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3712808-3722503:-1:exon

LOC116150630
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150630
product: uncharacterized LOC116150630
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134342.1
SIO_010081: LOC116150630
subclass of: SO_0000673
so part of: LOC116150630
location: complement(join(3712808..3712907,3716785..3716790,3722493..3722503))
location: region:3712808-3722503:-1
so has part: feature:3722493-3722503:-1:exon
so has part: feature:3716785-3716790:-1:exon
so has part: feature:3712808-3712907:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3722493-3722503:-1:exon

position:3722493:-1
position: 3722493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3716785-3716790:-1:exon

position:3716785:-1
position: 3716785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3716790:-1
position: 3716790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3712808-3712907:-1:exon

position:3712907:-1
position: 3712907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116150631
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150631
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4566616..4581617
location: region:4566616-4581617:1
so has part: feature:4566616-4581617:1:exon
subclass of: SO_0000011

116150631
type: Gene
SIO_000068: ncbigene

position:4566616:1
position: 4566616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4581617:1
position: 4581617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4566616-4581617:1:exon

LOC116150631
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150631
product: uncharacterized LOC116150631
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004134343.1
SIO_010081: LOC116150631
subclass of: SO_0000673
so part of: LOC116150631
location: join(4566616..4566812,4578878..4578883,4579767..4579771,4581604..4581617)
location: region:4566616-4581617:1
so has part: feature:4566616-4566812:1:exon
so has part: feature:4578878-4578883:1:exon
so has part: feature:4579767-4579771:1:exon
so has part: feature:4581604-4581617:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4566616-4566812:1:exon

position:4566812:1
position: 4566812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4578878-4578883:1:exon

position:4578878:1
position: 4578878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4578883:1
position: 4578883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4579767-4579771:1:exon

position:4579767:1
position: 4579767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4579771:1
position: 4579771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4581604-4581617:1:exon

position:4581604:1
position: 4581604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VSTM2A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: VSTM2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <4602426..4627424
location: region:4602426-4627424:1
so has part: feature:4602426-4627424:1:exon
subclass of: SO_0000010

105103442
type: Gene
SIO_000068: ncbigene

position:4602426:1
position: 4602426
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4627424:1
position: 4627424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4627424:1:exon

VSTM2A
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: VSTM2A
product: V-set and transmembrane domain containing 2A, transcript variant X3
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004134380.1
SIO_010081: VSTM2A
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4625671..4625808,4625931..4627424)
location: region:4602426-4627424:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4625671-4625808:1:exon
so has part: feature:4625931-4627424:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

position:4602495:1
position: 4602495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

position:4604336:1
position: 4604336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4604502:1
position: 4604502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

position:4606472:1
position: 4606472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4606522:1
position: 4606522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

position:4609180:1
position: 4609180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4609519:1
position: 4609519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4625671-4625808:1:exon

position:4625671:1
position: 4625671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4625808:1
position: 4625808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4625931-4627424:1:exon

position:4625931:1
position: 4625931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VSTM2A
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: VSTM2A
product: V-set and transmembrane domain containing 2A, transcript variant X4
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004134381.1
SIO_010081: VSTM2A
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4625749..4625808,4625931..4627424)
location: region:4602426-4627424:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4625749-4625808:1:exon
so has part: feature:4625931-4627424:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4625749-4625808:1:exon

position:4625749:1
position: 4625749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4625931-4627424:1:exon

VSTM2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: VSTM2A
product: V-set and transmembrane domain containing 2A, transcript variant X1
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 196 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_031445005.1
SIO_010081: VSTM2A
subclass of: SO_0000673
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4625931..4627424)
location: region:4602426-4627424:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4625931-4627424:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4625931-4627424:1:exon

VSTM2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: VSTM2A
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 9 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-set and transmembrane domain-containing protein 2A isoform X1
translation: MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLEPGADVAGAQAELLPDRDPDGEGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHRAQAYLKVNANSHARRMQAFEASPMWLQDAKPRRNVSAAAAPSSIHSSANQRMPSTSSPQAVAKIPKQSPQSAKSKSPVKSTERTAKLTLNSKHHHSAPTAL
SIO_010081: VSTM2A
subclass of: SO_0000673
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4625931..4626022)
location: region:4602426-4626022:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4625931-4626022:1:exon

XP_031300865.1
type: Protein
SIO_000068: ncbiprotein

position:4626022:1
position: 4626022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4625931-4626022:1:exon

VSTM2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: VSTM2A
product: V-set and transmembrane domain containing 2A, transcript variant X2
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 196 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_031445006.1
SIO_010081: VSTM2A
subclass of: SO_0000673
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4625809..4625935)
location: region:4602426-4625935:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4625809-4625935:1:exon

position:4625935:1
position: 4625935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4625809-4625935:1:exon

position:4625809:1
position: 4625809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VSTM2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: VSTM2A
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 9 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-set and transmembrane domain-containing protein 2A isoform X2
translation: MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLEPGADVAGAQAELLPDRDPDGEGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHRAQAYLKVNANSHARRMQAFEASPMWLQDAKPRRNVSAAAAPSSIHSSANQRMPSTSSPQAVAKIPKQSPQSGAWIATSHGLSVLLLVCGFVKGALL
SIO_010081: VSTM2A
subclass of: SO_0000673
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4625809..4625885)
location: region:4602426-4625885:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4625809-4625885:1:exon

XP_031300866.1
type: Protein
SIO_000068: ncbiprotein

position:4625885:1
position: 4625885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4625809-4625885:1:exon

VSTM2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: VSTM2A
product: V-set and transmembrane domain containing 2A, transcript variant X5
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 196 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_031445007.1
SIO_010081: VSTM2A
subclass of: SO_0000673
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4609836..4611728)
location: region:4602426-4611728:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4609836-4611728:1:exon

position:4611728:1
position: 4611728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4609836-4611728:1:exon

position:4609836:1
position: 4609836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

VSTM2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: VSTM2A
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01022099.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 9 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-set and transmembrane domain-containing protein 2A isoform X3
translation: MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLEPGADVAGAQAELLPDRDPDGEGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHRAQAYLKVNANSHARRMQAFEASPMWLQDAKPRRNVSAAAAPSSIHSSANQRMPSTSSPQAVAKIPKQSPQSD
SIO_010081: VSTM2A
subclass of: SO_0000673
so part of: VSTM2A
location: join(<4602426..4602495,4604336..4604502,4606472..4606522,4609180..4609519,4609836..4609840)
location: region:4602426-4609840:1
so has part: feature:4602426-4602495:1:exon
so has part: feature:4604336-4604502:1:exon
so has part: feature:4606472-4606522:1:exon
so has part: feature:4609180-4609519:1:exon
so has part: feature:4609836-4609840:1:exon

XP_031300867.1
type: Protein
SIO_000068: ncbiprotein

position:4609840:1
position: 4609840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4602426-4602495:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4604336-4604502:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606472-4606522:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4609180-4609519:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4609836-4609840:1:exon

SEC61G
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SEC61G
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4719167..4724423)
location: region:4719167-4724423:-1
so has part: feature:4719167-4724423:-1:exon
subclass of: SO_0000011

105103441
type: Gene
SIO_000068: ncbigene

position:4719167:-1
position: 4719167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4724423:-1
position: 4724423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4719167-4724423:-1:exon

SEC61G
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: SEC61G
product: SEC61 translocon gamma subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XR_004134383.1
SIO_010081: SEC61G
subclass of: SO_0000673
so part of: SEC61G
location: complement(join(4719167..4719337,4721060..4721162,4722490..4722588,4724292..4724423))
location: region:4719167-4724423:-1
so has part: feature:4724292-4724423:-1:exon
so has part: feature:4722490-4722588:-1:exon
so has part: feature:4721060-4721162:-1:exon
so has part: feature:4719167-4719337:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4724292-4724423:-1:exon

position:4724292:-1
position: 4724292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4722490-4722588:-1:exon

position:4722490:-1
position: 4722490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4722588:-1
position: 4722588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4721060-4721162:-1:exon

position:4721060:-1
position: 4721060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4721162:-1
position: 4721162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4719167-4719337:-1:exon

position:4719337:-1
position: 4719337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SEC61G
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: SEC61G
product: SEC61 translocon gamma subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XR_004134382.1
SIO_010081: SEC61G
subclass of: SO_0000673
so part of: SEC61G
location: complement(join(4719167..4719337,4721060..4721162,4722490..4722591,4724292..4724420))
location: region:4719167-4724420:-1
so has part: feature:4724292-4724420:-1:exon
so has part: feature:4722490-4722591:-1:exon
so has part: feature:4721060-4721162:-1:exon
so has part: feature:4719167-4719337:-1:exon

position:4724420:-1
position: 4724420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4724292-4724420:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4722490-4722591:-1:exon

position:4722591:-1
position: 4722591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4721060-4721162:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4719167-4719337:-1:exon

EGFR
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: EGFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4929124..5120659
location: region:4929124-5120659:1
so has part: feature:4929124-5120659:1:exon
subclass of: SO_0000010

105105749
type: Gene
SIO_000068: ncbigene

position:4929124:1
position: 4929124
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5120659:1
position: 5120659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4929124-5120659:1:exon

EGFR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: EGFR
product: epidermal growth factor receptor
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_031445008.1
SIO_010081: EGFR
subclass of: SO_0000673
so part of: EGFR
location: join(4929124..4929295,5059383..5059534,5060575..5060758,5063792..5063926,5069304..5069372,5070662..5070780,5072032..5072173,5073214..5073330,5076367..5076493,5076582..5076655,5077071..5077161,5079381..5079580,5080591..5080723,5082642..5082732,5084546..5084703,5089344..5089382,5091336..5091476,5092469..5092591,5093140..5093238,5098087..5098272,5105007..5105162,5105819..5105894,5109791..5109937,5111512..5111609,5112980..5113147,5113515..5113562,5114107..5114212,5114866..5120659)
location: region:4929124-5120659:1
so has part: feature:4929124-4929295:1:exon
so has part: feature:5059383-5059534:1:exon
so has part: feature:5060575-5060758:1:exon
so has part: feature:5063792-5063926:1:exon
so has part: feature:5069304-5069372:1:exon
so has part: feature:5070662-5070780:1:exon
so has part: feature:5072032-5072173:1:exon
so has part: feature:5073214-5073330:1:exon
so has part: feature:5076367-5076493:1:exon
so has part: feature:5076582-5076655:1:exon
so has part: feature:5077071-5077161:1:exon
so has part: feature:5079381-5079580:1:exon
so has part: feature:5080591-5080723:1:exon
so has part: feature:5082642-5082732:1:exon
so has part: feature:5084546-5084703:1:exon
so has part: feature:5089344-5089382:1:exon
so has part: feature:5091336-5091476:1:exon
so has part: feature:5092469-5092591:1:exon
so has part: feature:5093140-5093238:1:exon
so has part: feature:5098087-5098272:1:exon
so has part: feature:5105007-5105162:1:exon
so has part: feature:5105819-5105894:1:exon
so has part: feature:5109791-5109937:1:exon
so has part: feature:5111512-5111609:1:exon
so has part: feature:5112980-5113147:1:exon
so has part: feature:5113515-5113562:1:exon
so has part: feature:5114107-5114212:1:exon
so has part: feature:5114866-5120659:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4929124-4929295:1:exon

position:4929295:1
position: 4929295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5059383-5059534:1:exon

position:5059383:1
position: 5059383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5059534:1
position: 5059534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5060575-5060758:1:exon

position:5060575:1
position: 5060575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5060758:1
position: 5060758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5063792-5063926:1:exon

position:5063792:1
position: 5063792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5063926:1
position: 5063926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5069304-5069372:1:exon

position:5069304:1
position: 5069304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5069372:1
position: 5069372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5070662-5070780:1:exon

position:5070662:1
position: 5070662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5070780:1
position: 5070780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5072032-5072173:1:exon

position:5072032:1
position: 5072032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5072173:1
position: 5072173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5073214-5073330:1:exon

position:5073214:1
position: 5073214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5073330:1
position: 5073330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5076367-5076493:1:exon

position:5076367:1
position: 5076367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5076493:1
position: 5076493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5076582-5076655:1:exon

position:5076582:1
position: 5076582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5076655:1
position: 5076655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5077071-5077161:1:exon

position:5077071:1
position: 5077071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5077161:1
position: 5077161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5079381-5079580:1:exon

position:5079381:1
position: 5079381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5079580:1
position: 5079580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5080591-5080723:1:exon

position:5080591:1
position: 5080591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5080723:1
position: 5080723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5082642-5082732:1:exon

position:5082642:1
position: 5082642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5082732:1
position: 5082732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5084546-5084703:1:exon

position:5084546:1
position: 5084546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5084703:1
position: 5084703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5089344-5089382:1:exon

position:5089344:1
position: 5089344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5089382:1
position: 5089382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5091336-5091476:1:exon

position:5091336:1
position: 5091336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5091476:1
position: 5091476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5092469-5092591:1:exon

position:5092469:1
position: 5092469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5092591:1
position: 5092591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5093140-5093238:1:exon

position:5093140:1
position: 5093140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5093238:1
position: 5093238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5098087-5098272:1:exon

position:5098087:1
position: 5098087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5098272:1
position: 5098272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5105007-5105162:1:exon

position:5105007:1
position: 5105007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5105162:1
position: 5105162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5105819-5105894:1:exon

position:5105819:1
position: 5105819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5105894:1
position: 5105894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5109791-5109937:1:exon

position:5109791:1
position: 5109791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5109937:1
position: 5109937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5111512-5111609:1:exon

position:5111512:1
position: 5111512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5111609:1
position: 5111609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5112980-5113147:1:exon

position:5112980:1
position: 5112980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5113147:1
position: 5113147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:5113515-5113562:1:exon

position:5113515:1
position: 5113515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5113562:1
position: 5113562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:5114107-5114212:1:exon

position:5114107:1
position: 5114107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5114212:1
position: 5114212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:5114866-5120659:1:exon

position:5114866:1
position: 5114866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

EGFR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: EGFR
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: epidermal growth factor receptor
translation: MFNNCEVVLGNLEITYMQNSYDLSFLKTIQEVAGYVLIALNTVEKIPLENLQIIRGNVLYENTHALAVLSNYGANKTGLRELPMRNLQEILQGAVRFSNNPSLCSVETVQWRDIVNNEFLSNMSMDFQNQPGGCPKCDPSCVNGTCWGAGKENCQKLTKVICAQQCSGRCRGRSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPNGKYSFGATCVKNCPRNYVVTDHGSCVRACSSDSYEVEEDGVRKCKKCDGPCGKVCNGIGIGEFKDTLSINATNIKHFRNCTSISGDLHILPVAFRGDSFTRTPPLDPKELDILKTVREITGFLLIQAWPENRTGLHAFENLEIIRGRTKQHGQFSLAVVGLDITSLGLRSLKEISDGDVIISGNQNLCYANTINWKKLFGTSSQKTKIINNRSEQECKAVGHVCNPLCSSEGCWGADPKDCVSCRNVSRGKECVEKCNVLEGEPREFVENSECVQCHPECLPQAMNVTCTGRGPSSCVKCAHYIDGPNCVKTCPAGIAGENGTLVWKFADASHVCHLCHPNCTYGCAGPGLKGCAENRPKIPSIATGIVGGLLMVVVLALGVGLFLRRRHIVRKRTLRRLLQAELVEPLTPSGEAPNQALLRILKETEFKKVKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQHLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISTVLEKGERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFTKMARDPQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMDDVVDADEYLVPQQGFFHSPATSRTPLLSSLSATSNTPTVACVDRNGQSYPLKEDSFLQRYSSDPTGTLTEDSLDDTFLPAPEYVNQFIPKRPAGSVQNPVYHNQPLHPAPGRDPHYQNSHSNAVDNPEYLNTAHPACVNGALSGPALWAQKGTPQISLDNPDYQQAFXANAILEGPAAGDAKYLRAAPASRDLTGA
SIO_010081: EGFR
subclass of: SO_0000673
so part of: EGFR
location: join(5059454..5059534,5060575..5060758,5063792..5063926,5069304..5069372,5070662..5070780,5072032..5072173,5073214..5073330,5076367..5076493,5076582..5076655,5077071..5077161,5079381..5079580,5080591..5080723,5082642..5082732,5084546..5084703,5089344..5089382,5091336..5091476,5092469..5092591,5093140..5093238,5098087..5098272,5105007..5105162,5105819..5105894,5109791..5109937,5111512..5111609,5112980..5113147,5113515..5113562,5114107..5114212,5114866..5115211)
location: region:5059454-5115211:1
so has part: feature:5059454-5059534:1:exon
so has part: feature:5060575-5060758:1:exon
so has part: feature:5063792-5063926:1:exon
so has part: feature:5069304-5069372:1:exon
so has part: feature:5070662-5070780:1:exon
so has part: feature:5072032-5072173:1:exon
so has part: feature:5073214-5073330:1:exon
so has part: feature:5076367-5076493:1:exon
so has part: feature:5076582-5076655:1:exon
so has part: feature:5077071-5077161:1:exon
so has part: feature:5079381-5079580:1:exon
so has part: feature:5080591-5080723:1:exon
so has part: feature:5082642-5082732:1:exon
so has part: feature:5084546-5084703:1:exon
so has part: feature:5089344-5089382:1:exon
so has part: feature:5091336-5091476:1:exon
so has part: feature:5092469-5092591:1:exon
so has part: feature:5093140-5093238:1:exon
so has part: feature:5098087-5098272:1:exon
so has part: feature:5105007-5105162:1:exon
so has part: feature:5105819-5105894:1:exon
so has part: feature:5109791-5109937:1:exon
so has part: feature:5111512-5111609:1:exon
so has part: feature:5112980-5113147:1:exon
so has part: feature:5113515-5113562:1:exon
so has part: feature:5114107-5114212:1:exon
so has part: feature:5114866-5115211:1:exon

XP_031300868.1
type: Protein
SIO_000068: ncbiprotein

position:5059454:1
position: 5059454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5115211:1
position: 5115211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5059454-5059534:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5060575-5060758:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5063792-5063926:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5069304-5069372:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5070662-5070780:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5072032-5072173:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5073214-5073330:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5076367-5076493:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5076582-5076655:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5077071-5077161:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5079381-5079580:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5080591-5080723:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5082642-5082732:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5084546-5084703:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5089344-5089382:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5091336-5091476:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5092469-5092591:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5093140-5093238:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5098087-5098272:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5105007-5105162:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5105819-5105894:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5109791-5109937:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5111512-5111609:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5112980-5113147:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5113515-5113562:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5114107-5114212:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5114866-5115211:1:exon

LOC116150670
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150670
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 5084059..5084195
location: region:5084059-5084195:1
so has part: feature:5084059-5084195:1:exon
subclass of: SO_0000578

116150670
type: Gene
SIO_000068: ncbigene

position:5084059:1
position: 5084059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5084195:1
position: 5084195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5084059-5084195:1:exon

LOC116150670
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116150670
product: small nucleolar RNA SNORA2/SNORA34 family
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00410
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004134398.1
SIO_010081: LOC116150670
subclass of: SO_0000673
so part of: LOC116150670
location: 5084059..5084195
location: region:5084059-5084195:1
so has part: feature:5084059-5084195:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5084059-5084195:1:exon

LOC116150659
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150659
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5134418..5139760)
location: region:5134418-5139760:-1
so has part: feature:5134418-5139760:-1:exon
subclass of: SO_0000011

116150659
type: Gene
SIO_000068: ncbigene

position:5134418:-1
position: 5134418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5139760:-1
position: 5139760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5134418-5139760:-1:exon

LOC116150659
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150659
product: uncharacterized LOC116150659
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004134385.1
SIO_010081: LOC116150659
subclass of: SO_0000673
so part of: LOC116150659
location: complement(join(5134418..5134477,5136523..5136620,5139142..5139238,5139513..5139760))
location: region:5134418-5139760:-1
so has part: feature:5139513-5139760:-1:exon
so has part: feature:5139142-5139238:-1:exon
so has part: feature:5136523-5136620:-1:exon
so has part: feature:5134418-5134477:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5139513-5139760:-1:exon

position:5139513:-1
position: 5139513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5139142-5139238:-1:exon

position:5139142:-1
position: 5139142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5139238:-1
position: 5139238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5136523-5136620:-1:exon

position:5136523:-1
position: 5136523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5136620:-1
position: 5136620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5134418-5134477:-1:exon

position:5134477:-1
position: 5134477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116147085
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116147085
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5167414..5173484)
location: region:5167414-5173484:-1
so has part: feature:5167414-5173484:-1:exon
subclass of: SO_0000010

116147085
type: Gene
SIO_000068: ncbigene

position:5167414:-1
position: 5167414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5173484:-1
position: 5173484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5167414-5173484:-1:exon

LOC116147085
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116147085
product: uncharacterized LOC116147085, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031445009.1
SIO_010081: LOC116147085
subclass of: SO_0000673
so part of: LOC116147085
location: complement(join(5167414..5167907,5168448..5168556,5169559..5169648,5170253..5173484))
location: region:5167414-5173484:-1
so has part: feature:5170253-5173484:-1:exon
so has part: feature:5169559-5169648:-1:exon
so has part: feature:5168448-5168556:-1:exon
so has part: feature:5167414-5167907:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5170253-5173484:-1:exon

position:5170253:-1
position: 5170253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5169559-5169648:-1:exon

position:5169559:-1
position: 5169559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5169648:-1
position: 5169648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5168448-5168556:-1:exon

position:5168448:-1
position: 5168448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5168556:-1
position: 5168556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5167414-5167907:-1:exon

position:5167907:-1
position: 5167907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116147085
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116147085
product: uncharacterized LOC116147085, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_031445010.1
SIO_010081: LOC116147085
subclass of: SO_0000673
so part of: LOC116147085
location: complement(join(5167414..5167907,5168448..5168556,5169559..5170244))
location: region:5167414-5170244:-1
so has part: feature:5169559-5170244:-1:exon
so has part: feature:5168448-5168556:-1:exon
so has part: feature:5167414-5167907:-1:exon

position:5170244:-1
position: 5170244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5169559-5170244:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5168448-5168556:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5167414-5167907:-1:exon

LOC116147085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116147085
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116147085 isoform X1
translation: MFCRMPGDPDPHRPVHLHGGLSLLRGPRMSAGGSVSRRSLQPIVAVLLFSRALSPHARQVDVKLRPEPLGTGGRPPTLWRAASSLRPAARRLTLLTHLLGRSRGDAHQPSGRPVARGADAYQQPLPVCSARAWRPVGPPHSWTPCRRCVTDVRQPLVPLGPQDSRCWAVLSVGESLGGAGACATCGGDRGSGRTDEHDCSPSSSGSL
SIO_010081: LOC116147085
subclass of: SO_0000673
so part of: LOC116147085
location: complement(join(5167484..5167907,5168448..5168556,5169559..5169648,5170253))
location: region:5167484-5170253:-1
so has part: feature:5170253-5170253:-1:exon
so has part: feature:5169559-5169648:-1:exon
so has part: feature:5168448-5168556:-1:exon
so has part: feature:5167484-5167907:-1:exon

XP_031300869.1
type: Protein
SIO_000068: ncbiprotein

position:5167484:-1
position: 5167484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5170253-5170253:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5169559-5169648:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5168448-5168556:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5167484-5167907:-1:exon

LOC116147085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116147085
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116147085 isoform X2
translation: MPGDPDPHRPVHLHGGLSLLRGPRMSAGGSVSRRSLQPIVAVLLFSRALSPHARQVDVKLRPEPLGTGGRPPTLWRAASSLRPAARRLTLLTHLLGRSRGDAHQPSGRPVARGADAYQQPLPVCSARAWRPVGPPHSWTPCRRCVTDVRQPLVPLGPQDSRCWAVLSVGESLGGAGACATCGGDRGSGRTDEHDCSPSSSGSL
SIO_010081: LOC116147085
subclass of: SO_0000673
so part of: LOC116147085
location: complement(join(5167484..5167907,5168448..5168556,5169559..5169637))
location: region:5167484-5169637:-1
so has part: feature:5169559-5169637:-1:exon
so has part: feature:5168448-5168556:-1:exon
so has part: feature:5167484-5167907:-1:exon

XP_031300870.1
type: Protein
SIO_000068: ncbiprotein

position:5169637:-1
position: 5169637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5169559-5169637:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5168448-5168556:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5167484-5167907:-1:exon

LOC105106710
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105106710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5199766..5204854
location: region:5199766-5204854:1
so has part: feature:5199766-5204854:1:exon
subclass of: SO_0000010

105106710
type: Gene
SIO_000068: ncbigene

position:5199766:1
position: 5199766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5204854:1
position: 5204854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5199766-5204854:1:exon

LOC105106710
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105106710
product: translation initiation factor IF-2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031444966.1
SIO_010081: LOC105106710
subclass of: SO_0000673
so part of: LOC105106710
location: join(5199766..5199996,5200128..5200464,5203546..5204854)
location: region:5199766-5204854:1
so has part: feature:5199766-5199996:1:exon
so has part: feature:5200128-5200464:1:exon
so has part: feature:5203546-5204854:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5199766-5199996:1:exon

position:5199996:1
position: 5199996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5200128-5200464:1:exon

position:5200128:1
position: 5200128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5200464:1
position: 5200464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5203546-5204854:1:exon

position:5203546:1
position: 5203546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105106710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105106710
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC105106710
translation: MPADGCRGENSTREAQAGGPGRPRRAAVMKTRRAPPWPPGVYTHFRRRRPAPKCRTAPAEREPVARQRRGASPSACANACASSAAGCAHWRRGRGCRRWAGRADVARGGATRPGVVTLTARRAGLALARRTPLAPDVAGAAGGHARGLSPGPHGWPGGHLNCSSARLPAGLEFALLGSFREDRVFPRRGAGRPQAGSALPTTGTPHQELSARDPQPRPAGQAARPAGRPALPSRTPCVWLPSTRAGAGDALRAPETRQERLAGAQRPRPPRGAGSPQPPSTSAPQGAACVSEELLAQDIATWRQRVTEKEEEKARLLEAIARRERALQDEVTHLEALAAHLLSAPRRPPCSDPGLSPATTSPRLRGCXGGGSRPSSAPSFVLVAPRGHSVSWEWSVVPRREQCLNVHVFS
SIO_010081: LOC105106710
subclass of: SO_0000673
so part of: LOC105106710
location: join(5199766..5199996,5200128..5200464,5203546..5204210)
location: region:5199766-5204210:1
so has part: feature:5199766-5199996:1:exon
so has part: feature:5200128-5200464:1:exon
so has part: feature:5203546-5204210:1:exon

XP_031300826.1
type: Protein
SIO_000068: ncbiprotein

position:5204210:1
position: 5204210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5199766-5199996:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5200128-5200464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5203546-5204210:1:exon

LOC116150632
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150632
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5222290..5226234
location: region:5222290-5226234:1
so has part: feature:5222290-5226234:1:exon
subclass of: SO_0000011

116150632
type: Gene
SIO_000068: ncbigene

position:5222290:1
position: 5222290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5226234:1
position: 5226234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5222290-5226234:1:exon

LOC116150632
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150632
product: uncharacterized LOC116150632
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004134344.1
SIO_010081: LOC116150632
subclass of: SO_0000673
so part of: LOC116150632
location: join(5222290..5222817,5224477..5224598,5224727..5224923,5225356..5225407,5226116..5226234)
location: region:5222290-5226234:1
so has part: feature:5222290-5222817:1:exon
so has part: feature:5224477-5224598:1:exon
so has part: feature:5224727-5224923:1:exon
so has part: feature:5225356-5225407:1:exon
so has part: feature:5226116-5226234:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5222290-5222817:1:exon

position:5222817:1
position: 5222817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5224477-5224598:1:exon

position:5224477:1
position: 5224477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5224598:1
position: 5224598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5224727-5224923:1:exon

position:5224727:1
position: 5224727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5224923:1
position: 5224923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5225356-5225407:1:exon

position:5225356:1
position: 5225356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5225407:1
position: 5225407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5226116-5226234:1:exon

position:5226116:1
position: 5226116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LANCL2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LANCL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5228093..5322848
location: region:5228093-5322848:1
so has part: feature:5228093-5322848:1:exon
subclass of: SO_0000010

105103440
type: Gene
SIO_000068: ncbigene

position:5228093:1
position: 5228093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5322848:1
position: 5322848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5228093-5322848:1:exon

LANCL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LANCL2
product: LanC like 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031445011.1
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5228093..5228353,5252871..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5321436..5321646,5321745..5322848)
location: region:5228093-5322848:1
so has part: feature:5228093-5228353:1:exon
so has part: feature:5252871-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5321436-5321646:1:exon
so has part: feature:5321745-5322848:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5228093-5228353:1:exon

position:5228353:1
position: 5228353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5252871-5252988:1:exon

position:5252871:1
position: 5252871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5252988:1
position: 5252988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5262345-5262552:1:exon

position:5262345:1
position: 5262345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5262552:1
position: 5262552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5263340-5263487:1:exon

position:5263340:1
position: 5263340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5263487:1
position: 5263487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5264828-5264974:1:exon

position:5264828:1
position: 5264828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5264974:1
position: 5264974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5268498-5268680:1:exon

position:5268498:1
position: 5268498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5268680:1
position: 5268680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5277308-5277484:1:exon

position:5277308:1
position: 5277308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5277484:1
position: 5277484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5279522-5279594:1:exon

position:5279522:1
position: 5279522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5279594:1
position: 5279594
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5321436-5321646:1:exon

position:5321436:1
position: 5321436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5321646:1
position: 5321646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5321745-5322848:1:exon

position:5321745:1
position: 5321745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LANCL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LANCL2
product: LanC like 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_031445014.1
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5228105..5228353,5252871..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5283222..5285531)
location: region:5228105-5285531:1
so has part: feature:5228105-5228353:1:exon
so has part: feature:5252871-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5283222-5285531:1:exon

position:5228105:1
position: 5228105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5285531:1
position: 5285531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5228105-5228353:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5252871-5252988:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5283222-5285531:1:exon

position:5283222:1
position: 5283222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LANCL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LANCL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lanC-like protein 2 isoform X1
translation: MGETMSRQAQAAAGRGRGHGGAGVPPTPSRTTRPPPAGEEPPALAPRCPRQSGPPFPQRRKIVHHFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRSVVCRESDLPDELLYGRAGYLYALLYVNSEVGPGAVCESAIKEVVDAIIESGKSLSREEKKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQEILTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGICHGAAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGKLKPCAPPALDGPRASRCKQTRRRHAQEASSWRGRWSSPESPLTETVVGGQLYFKRQTERRQGNELLVTRSISTTLSSFSWCFGPTRLNPSGTHAPSCLLQPKAQGEACVKPGKALKCHLSPALVPVISTSTCTQRSWAKKPSCHRA
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5228171..5228353,5252871..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5321436..5321646,5321745..5321979)
location: region:5228171-5321979:1
so has part: feature:5228171-5228353:1:exon
so has part: feature:5252871-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5321436-5321646:1:exon
so has part: feature:5321745-5321979:1:exon

XP_031300871.1
type: Protein
SIO_000068: ncbiprotein

position:5228171:1
position: 5228171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5321979:1
position: 5321979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5228171-5228353:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5252871-5252988:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5321436-5321646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5321745-5321979:1:exon

LANCL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LANCL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lanC-like protein 2 isoform X3
translation: MGETMSRQAQAAAGRGRGHGGAGVPPTPSRTTRPPPAGEEPPALAPRCPRQSGPPFPQRRKIVHHFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRSVVCRESDLPDELLYGRAGYLYALLYVNSEVGPGAVCESAIKEVVDAIIESGKSLSREEKKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQEILTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGICHGAAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHFLSDILVPETSRFPAFELGSSQGDAKMQKDY
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5228171..5228353,5252871..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5283222..5283337)
location: region:5228171-5283337:1
so has part: feature:5228171-5228353:1:exon
so has part: feature:5252871-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5283222-5283337:1:exon

XP_031300874.1
type: Protein
SIO_000068: ncbiprotein

position:5283337:1
position: 5283337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5228171-5228353:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5252871-5252988:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5283222-5283337:1:exon

LANCL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LANCL2
product: LanC like 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031445012.1
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5228533..5229183,5252871..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5321436..5321646,5321745..5321994)
location: region:5228533-5321994:1
so has part: feature:5228533-5229183:1:exon
so has part: feature:5252871-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5321436-5321646:1:exon
so has part: feature:5321745-5321994:1:exon

position:5228533:1
position: 5228533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5321994:1
position: 5321994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5228533-5229183:1:exon

position:5229183:1
position: 5229183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5252871-5252988:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5321436-5321646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5321745-5321994:1:exon

LANCL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LANCL2
product: LanC like 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031445013.1
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5252680..5252759,5252871..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5321436..5321646,5321745..5321994)
location: region:5252680-5321994:1
so has part: feature:5252680-5252759:1:exon
so has part: feature:5252871-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5321436-5321646:1:exon
so has part: feature:5321745-5321994:1:exon

position:5252680:1
position: 5252680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5252680-5252759:1:exon

position:5252759:1
position: 5252759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5252871-5252988:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5321436-5321646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5321745-5321994:1:exon

LANCL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LANCL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lanC-like protein 2 isoform X2
translation: MEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRSVVCRESDLPDELLYGRAGYLYALLYVNSEVGPGAVCESAIKEVVDAIIESGKSLSREEKKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQEILTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGICHGAAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGKLKPCAPPALDGPRASRCKQTRRRHAQEASSWRGRWSSPESPLTETVVGGQLYFKRQTERRQGNELLVTRSISTTLSSFSWCFGPTRLNPSGTHAPSCLLQPKAQGEACVKPGKALKCHLSPALVPVISTSTCTQRSWAKKPSCHRA
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5252928..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5321436..5321646,5321745..5321979)
location: region:5252928-5321979:1
so has part: feature:5252928-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5321436-5321646:1:exon
so has part: feature:5321745-5321979:1:exon

XP_031300872.1
type: Protein
SIO_000068: ncbiprotein

position:5252928:1
position: 5252928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5252928-5252988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5321436-5321646:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5321745-5321979:1:exon

LANCL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LANCL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lanC-like protein 2 isoform X2
translation: MEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRSVVCRESDLPDELLYGRAGYLYALLYVNSEVGPGAVCESAIKEVVDAIIESGKSLSREEKKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQEILTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGICHGAAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGKLKPCAPPALDGPRASRCKQTRRRHAQEASSWRGRWSSPESPLTETVVGGQLYFKRQTERRQGNELLVTRSISTTLSSFSWCFGPTRLNPSGTHAPSCLLQPKAQGEACVKPGKALKCHLSPALVPVISTSTCTQRSWAKKPSCHRA
SIO_010081: LANCL2
subclass of: SO_0000673
so part of: LANCL2
location: join(5252928..5252988,5262345..5262552,5263340..5263487,5264828..5264974,5268498..5268680,5277308..5277484,5279522..5279594,5321436..5321646,5321745..5321979)
location: region:5252928-5321979:1
so has part: feature:5252928-5252988:1:exon
so has part: feature:5262345-5262552:1:exon
so has part: feature:5263340-5263487:1:exon
so has part: feature:5264828-5264974:1:exon
so has part: feature:5268498-5268680:1:exon
so has part: feature:5277308-5277484:1:exon
so has part: feature:5279522-5279594:1:exon
so has part: feature:5321436-5321646:1:exon
so has part: feature:5321745-5321979:1:exon

XP_031300873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5252928-5252988:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5262345-5262552:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5263340-5263487:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5264828-5264974:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5268498-5268680:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5277308-5277484:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5279522-5279594:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5321436-5321646:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5321745-5321979:1:exon

VOPP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: VOPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5300519..5409575)
location: region:5300519-5409575:-1
so has part: feature:5300519-5409575:-1:exon
subclass of: SO_0000010

105103439
type: Gene
SIO_000068: ncbigene

position:5300519:-1
position: 5300519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5409575:-1
position: 5409575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5300519-5409575:-1:exon

VOPP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: VOPP1
product: VOPP1 WW domain binding protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031445015.1
SIO_010081: VOPP1
subclass of: SO_0000673
so part of: VOPP1
location: complement(join(5300519..5302891,5318646..5318782,5322934..5323011,5347113..5347171,5409363..5409575))
location: region:5300519-5409575:-1
so has part: feature:5409363-5409575:-1:exon
so has part: feature:5347113-5347171:-1:exon
so has part: feature:5322934-5323011:-1:exon
so has part: feature:5318646-5318782:-1:exon
so has part: feature:5300519-5302891:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5409363-5409575:-1:exon

position:5409363:-1
position: 5409363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5347113-5347171:-1:exon

position:5347113:-1
position: 5347113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5347171:-1
position: 5347171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5322934-5323011:-1:exon

position:5322934:-1
position: 5322934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5323011:-1
position: 5323011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5318646-5318782:-1:exon

position:5318646:-1
position: 5318646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5318782:-1
position: 5318782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5300519-5302891:-1:exon

position:5302891:-1
position: 5302891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

VOPP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: VOPP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vesicular, overexpressed in cancer, prosurvival protein 1
translation: MGRLARRVAALLLGLLAECTEARKHCWYFEGLYPTYYICRPFEDCCGSRCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRRRMYPPPLIEEPAFNVSYTRQPASSTPGAQQLGLPYYTDPGGPGVTPAGNPVAMAFQVQPSSPQGSSAYPPPPSYCNTPPPPYEQVVKDK
SIO_010081: VOPP1
subclass of: SO_0000673
so part of: VOPP1
location: complement(join(5302701..5302891,5318646..5318782,5322934..5323011,5347113..5347171,5409363..5409416))
location: region:5302701-5409416:-1
so has part: feature:5409363-5409416:-1:exon
so has part: feature:5347113-5347171:-1:exon
so has part: feature:5322934-5323011:-1:exon
so has part: feature:5318646-5318782:-1:exon
so has part: feature:5302701-5302891:-1:exon

XP_031300875.1
type: Protein
SIO_000068: ncbiprotein

position:5302701:-1
position: 5302701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5409416:-1
position: 5409416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5409363-5409416:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5347113-5347171:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5322934-5323011:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5318646-5318782:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5302701-5302891:-1:exon

LOC116150661
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150661
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5449127..5452995)
location: region:5449127-5452995:-1
so has part: feature:5449127-5452995:-1:exon
subclass of: SO_0000011

116150661
type: Gene
SIO_000068: ncbigene

position:5449127:-1
position: 5449127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5452995:-1
position: 5452995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5449127-5452995:-1:exon

LOC116150661
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150661
product: uncharacterized LOC116150661
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004134388.1
SIO_010081: LOC116150661
subclass of: SO_0000673
so part of: LOC116150661
location: complement(join(5449127..5449626,5449705..5449982,5450363..5452995))
location: region:5449127-5452995:-1
so has part: feature:5450363-5452995:-1:exon
so has part: feature:5449705-5449982:-1:exon
so has part: feature:5449127-5449626:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5450363-5452995:-1:exon

position:5450363:-1
position: 5450363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5449705-5449982:-1:exon

position:5449705:-1
position: 5449705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5449982:-1
position: 5449982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5449127-5449626:-1:exon

position:5449626:-1
position: 5449626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PGAM2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: PGAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5453090..5455392
location: region:5453090-5455392:1
so has part: feature:5453090-5455392:1:exon
subclass of: SO_0000010

105103438
type: Gene
SIO_000068: ncbigene

position:5453090:1
position: 5453090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5455392:1
position: 5455392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5453090-5455392:1:exon

PGAM2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PGAM2
product: phosphoglycerate mutase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_031445017.1
SIO_010081: PGAM2
subclass of: SO_0000673
so part of: PGAM2
location: join(5453090..5453573,5453664..5453844,5455187..5455392)
location: region:5453090-5455392:1
so has part: feature:5453090-5453573:1:exon
so has part: feature:5453664-5453844:1:exon
so has part: feature:5455187-5455392:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5453090-5453573:1:exon

position:5453573:1
position: 5453573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5453664-5453844:1:exon

position:5453664:1
position: 5453664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5453844:1
position: 5453844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5455187-5455392:1:exon

position:5455187:1
position: 5455187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PGAM2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PGAM2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphoglycerate mutase 2
translation: MSTHHRLVMVRHGESTWNQENRFCGWFDAELSEKGAEEAKRGAHAIKDAKMEFDICYTSVLKRAIRTLWTILDGTDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFDIPPPPMDEHHPYYSSISKERRYAGLKPGELPTCESLKDTIARALPFWNDEIAPQIKAGKRVLIAAHGNSLRGIVKHLEGMSDQAIMELNLPTGIPIVYELDQALKPTKPMRFLGDEETVRKAMEAVAAQGKAK
SIO_010081: PGAM2
subclass of: SO_0000673
so part of: PGAM2
location: join(5453157..5453573,5453664..5453844,5455187..5455353)
location: region:5453157-5455353:1
so has part: feature:5453157-5453573:1:exon
so has part: feature:5453664-5453844:1:exon
so has part: feature:5455187-5455353:1:exon

XP_031300877.1
type: Protein
SIO_000068: ncbiprotein

position:5453157:1
position: 5453157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5455353:1
position: 5455353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5453157-5453573:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5453664-5453844:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5455187-5455353:1:exon

DBNL
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: DBNL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5456155..5468108)
location: region:5456155-5468108:-1
so has part: feature:5456155-5468108:-1:exon
subclass of: SO_0000010

105103437
type: Gene
SIO_000068: ncbigene

position:5456155:-1
position: 5456155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5468108:-1
position: 5468108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5456155-5468108:-1:exon

DBNL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: DBNL
product: drebrin like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XM_031445016.1
SIO_010081: DBNL
subclass of: SO_0000673
so part of: DBNL
location: complement(join(5456155..5457254,5457717..5457813,5458072..5458184,5458287..5458382,5458954..5459047,5459317..5459362,5459491..5459594,5459955..5460032,5460874..5461020,5461888..5461962,5462467..5462579,5464373..5464428,5467935..5468108))
location: region:5456155-5468108:-1
so has part: feature:5467935-5468108:-1:exon
so has part: feature:5464373-5464428:-1:exon
so has part: feature:5462467-5462579:-1:exon
so has part: feature:5461888-5461962:-1:exon
so has part: feature:5460874-5461020:-1:exon
so has part: feature:5459955-5460032:-1:exon
so has part: feature:5459491-5459594:-1:exon
so has part: feature:5459317-5459362:-1:exon
so has part: feature:5458954-5459047:-1:exon
so has part: feature:5458287-5458382:-1:exon
so has part: feature:5458072-5458184:-1:exon
so has part: feature:5457717-5457813:-1:exon
so has part: feature:5456155-5457254:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5467935-5468108:-1:exon

position:5467935:-1
position: 5467935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5464373-5464428:-1:exon

position:5464373:-1
position: 5464373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5464428:-1
position: 5464428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5462467-5462579:-1:exon

position:5462467:-1
position: 5462467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5462579:-1
position: 5462579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5461888-5461962:-1:exon

position:5461888:-1
position: 5461888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5461962:-1
position: 5461962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5460874-5461020:-1:exon

position:5460874:-1
position: 5460874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5461020:-1
position: 5461020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5459955-5460032:-1:exon

position:5459955:-1
position: 5459955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5460032:-1
position: 5460032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5459491-5459594:-1:exon

position:5459491:-1
position: 5459491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5459594:-1
position: 5459594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5459317-5459362:-1:exon

position:5459317:-1
position: 5459317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5459362:-1
position: 5459362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5458954-5459047:-1:exon

position:5458954:-1
position: 5458954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5459047:-1
position: 5459047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5458287-5458382:-1:exon

position:5458287:-1
position: 5458287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5458382:-1
position: 5458382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5458072-5458184:-1:exon

position:5458072:-1
position: 5458072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5458184:-1
position: 5458184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5457717-5457813:-1:exon

position:5457717:-1
position: 5457717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5457813:-1
position: 5457813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5456155-5457254:-1:exon

position:5457254:-1
position: 5457254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DBNL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: DBNL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: drebrin-like protein
translation: MAANLSRNGPALQEAYGRVVNGKSPTDWALFTYEGNSNDIRVAGTGDGGLEEMVEELNSGKVMYAFCRVKDPNSGLPKFVLVNWTGEGVNDVRKGVCANHVSTMASFLKGAHVTINARAEEDVEPECIMQKVARASGANYAFHKESGRFQDAGPQAPVGSVYQKTNAVSEIKRVGKDSFWAKAEKEEENRRLEEKRRERELREAALREQRYQEQAGPQRKSEQHEVASRSREEQEPVCQQPPHPREIFKQKERAMSTTSISSPQPGKLRSPFLQRQLTQPETPLSREAAHAPSRPRADPREEPVPSTPPCLAQVEAEAVYEEPPEQETLYEEPPVVQQQDGSSEHVDHYPGLSGKGLCARALYDYQAADETEISFDPENLITGIEVIDEGWWRGYGPDGHFGMFPANYVELIE
SIO_010081: DBNL
subclass of: SO_0000673
so part of: DBNL
location: complement(join(5457115..5457254,5457717..5457813,5458072..5458184,5458287..5458382,5458954..5459047,5459317..5459362,5459491..5459594,5459955..5460032,5460874..5461020,5461888..5461962,5462467..5462579,5464373..5464428,5467935..5468017))
location: region:5457115-5468017:-1
so has part: feature:5467935-5468017:-1:exon
so has part: feature:5464373-5464428:-1:exon
so has part: feature:5462467-5462579:-1:exon
so has part: feature:5461888-5461962:-1:exon
so has part: feature:5460874-5461020:-1:exon
so has part: feature:5459955-5460032:-1:exon
so has part: feature:5459491-5459594:-1:exon
so has part: feature:5459317-5459362:-1:exon
so has part: feature:5458954-5459047:-1:exon
so has part: feature:5458287-5458382:-1:exon
so has part: feature:5458072-5458184:-1:exon
so has part: feature:5457717-5457813:-1:exon
so has part: feature:5457115-5457254:-1:exon

XP_031300876.1
type: Protein
SIO_000068: ncbiprotein

position:5457115:-1
position: 5457115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5468017:-1
position: 5468017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5467935-5468017:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5464373-5464428:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5462467-5462579:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5461888-5461962:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5460874-5461020:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5459955-5460032:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5459491-5459594:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5459317-5459362:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5458954-5459047:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5458287-5458382:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5458072-5458184:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5457717-5457813:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5457115-5457254:-1:exon

LOC116150662
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150662
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5476594..5489771)
location: region:5476594-5489771:-1
so has part: feature:5476594-5489771:-1:exon
subclass of: SO_0000011

116150662
type: Gene
SIO_000068: ncbigene

position:5476594:-1
position: 5476594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5489771:-1
position: 5489771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5476594-5489771:-1:exon

LOC116150662
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150662
product: uncharacterized LOC116150662
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004134390.1
SIO_010081: LOC116150662
subclass of: SO_0000673
so part of: LOC116150662
location: complement(join(5476594..5479268,5483985..5484130,5487565..5487716,5488373..5489771))
location: region:5476594-5489771:-1
so has part: feature:5488373-5489771:-1:exon
so has part: feature:5487565-5487716:-1:exon
so has part: feature:5483985-5484130:-1:exon
so has part: feature:5476594-5479268:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5488373-5489771:-1:exon

position:5488373:-1
position: 5488373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5487565-5487716:-1:exon

position:5487565:-1
position: 5487565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5487716:-1
position: 5487716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5483985-5484130:-1:exon

position:5483985:-1
position: 5483985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5484130:-1
position: 5484130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5476594-5479268:-1:exon

position:5479268:-1
position: 5479268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105093972
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105093972
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5495232..5583930
location: region:5495232-5583930:1
so has part: feature:5495232-5583930:1:exon
subclass of: SO_0000010

105093972
type: Gene
SIO_000068: ncbigene

position:5495232:1
position: 5495232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5583930:1
position: 5583930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5495232-5583930:1:exon

LOC105093972
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105093972
product: up-regulator of cell proliferation, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_031445019.1
SIO_010081: LOC105093972
subclass of: SO_0000673
so part of: LOC105093972
location: join(5495232..5495659,5572222..5572292,5578728..5578778,5578997..5579035,5580641..5583930)
location: region:5495232-5583930:1
so has part: feature:5495232-5495659:1:exon
so has part: feature:5572222-5572292:1:exon
so has part: feature:5578728-5578778:1:exon
so has part: feature:5578997-5579035:1:exon
so has part: feature:5580641-5583930:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5495232-5495659:1:exon

position:5495659:1
position: 5495659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5572222-5572292:1:exon

position:5572222:1
position: 5572222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5572292:1
position: 5572292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5578728-5578778:1:exon

position:5578728:1
position: 5578728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5578778:1
position: 5578778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5578997-5579035:1:exon

position:5578997:1
position: 5578997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5579035:1
position: 5579035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5580641-5583930:1:exon

position:5580641:1
position: 5580641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150663
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150663
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5536369..5539857
location: region:5536369-5539857:1
so has part: feature:5536369-5539857:1:exon

116150663
type: Gene
SIO_000068: ncbigene

position:5536369:1
position: 5536369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5539857:1
position: 5539857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5536369-5539857:1:exon

LOC116150663
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150663
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116150663
subclass of: SO_0000673
so part of: LOC116150663
location: 5536369..5539857
location: region:5536369-5539857:1
so has part: feature:5536369-5539857:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5536369-5539857:1:exon

LOC105093972
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105093972
product: up-regulator of cell proliferation, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_031445018.1
SIO_010081: LOC105093972
subclass of: SO_0000673
so part of: LOC105093972
location: join(5558158..5558303,5572222..5572292,5578728..5578778,5578997..5579035,5580641..5583930)
location: region:5558158-5583930:1
so has part: feature:5558158-5558303:1:exon
so has part: feature:5572222-5572292:1:exon
so has part: feature:5578728-5578778:1:exon
so has part: feature:5578997-5579035:1:exon
so has part: feature:5580641-5583930:1:exon

position:5558158:1
position: 5558158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5558158-5558303:1:exon

position:5558303:1
position: 5558303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5572222-5572292:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5578728-5578778:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5578997-5579035:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5580641-5583930:1:exon

LOC105093972
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105093972
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: up-regulator of cell proliferation isoform X1
translation: MASPGRSDLGDVAPELKASEGRTAVAIADLEWREMEGDDCEFHYGDGTNEAQDSDFPTVERSRLQEMLALLGLETYQGQKLSLQDSLQISSDSMKNWAPQAPKDLPWSFLRKLQALNAEARSTTMVLDMPPDTRPAEKESQMEEEIVYWDTADDISADIYSFSELPTPDTPVNPLDLLCALLHSSDSFLQQEIVLKMALCQFALPLVLPDSENHDHVFLLWALRGTVRTCWPQPPRAAGSFREDSVVLARAPAFAFVRMEVSTNSKSQLLNAVLSPGHRQRDCFWHRDLNLGTNPREIADGLVEISWFLPSGREDVDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKEYKLLSSVKGSATKYYFILSPYRGKRNTNLRFLNRLIPVLRMDHSHVLVKVSSTDGAGFVRRVRAIVAHVTRSPCRRLSVEDMAGAARKLGLRVDEDCEECQRAKDRMERITRKIKDADAYRRDELRLQGDPWRKAAQVERELCQVQWAGEPPEKYRAELRHRLLELRMQQNGHAPPWGLQEFVWGISSPSAGERQYFLRWMEWGLARLAPPRPRPAPEAILALRPKHCGAADLSEPPWPEPLGVEHFLREMGQFYEAESCLVEAGKLPAGQRRFAHFPGLALELLLRGLPLELVDGSTLSTPLRWVTGLLRELHGRLDRRSRLVVLSALGVPGTGKSTLLNTMFGLRFATGRGCGPRGAFMQLITVAESFSQDLGCDHILVIDSGGVVGGVLSEAGDRLEREASLATLIMGLSNVTVVSLAETRDIPPAILHAFLRLEKTGHMPNCQFVYQNLRDVSAPGSKPRERRQLLDQPGDVSRAAAQMEKQGDGLRTLADLTFCDPEKQHIWHIPGLWHGVPPMAAVSSGYSEAIFELKRCLLENIRNGLSNQNKDIQQLLELVRRL
SIO_010081: LOC105093972
subclass of: SO_0000673
so part of: LOC105093972
location: join(5558290..5558303,5572222..5572292,5578728..5578778,5578997..5579035,5580641..5583234)
location: region:5558290-5583234:1
so has part: feature:5558290-5558303:1:exon
so has part: feature:5572222-5572292:1:exon
so has part: feature:5578728-5578778:1:exon
so has part: feature:5578997-5579035:1:exon
so has part: feature:5580641-5583234:1:exon

XP_031300878.1
type: Protein
SIO_000068: ncbiprotein

position:5558290:1
position: 5558290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5583234:1
position: 5583234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5558290-5558303:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5572222-5572292:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5578728-5578778:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5578997-5579035:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5580641-5583234:1:exon

LOC105093972
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105093972
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: up-regulator of cell proliferation isoform X2
translation: MEGDDCEFHYGDGTNEAQDSDFPTVERSRLQEMLALLGLETYQGQKLSLQDSLQISSDSMKNWAPQAPKDLPWSFLRKLQALNAEARSTTMVLDMPPDTRPAEKESQMEEEIVYWDTADDISADIYSFSELPTPDTPVNPLDLLCALLHSSDSFLQQEIVLKMALCQFALPLVLPDSENHDHVFLLWALRGTVRTCWPQPPRAAGSFREDSVVLARAPAFAFVRMEVSTNSKSQLLNAVLSPGHRQRDCFWHRDLNLGTNPREIADGLVEISWFLPSGREDVDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKEYKLLSSVKGSATKYYFILSPYRGKRNTNLRFLNRLIPVLRMDHSHVLVKVSSTDGAGFVRRVRAIVAHVTRSPCRRLSVEDMAGAARKLGLRVDEDCEECQRAKDRMERITRKIKDADAYRRDELRLQGDPWRKAAQVERELCQVQWAGEPPEKYRAELRHRLLELRMQQNGHAPPWGLQEFVWGISSPSAGERQYFLRWMEWGLARLAPPRPRPAPEAILALRPKHCGAADLSEPPWPEPLGVEHFLREMGQFYEAESCLVEAGKLPAGQRRFAHFPGLALELLLRGLPLELVDGSTLSTPLRWVTGLLRELHGRLDRRSRLVVLSALGVPGTGKSTLLNTMFGLRFATGRGCGPRGAFMQLITVAESFSQDLGCDHILVIDSGGVVGGVLSEAGDRLEREASLATLIMGLSNVTVVSLAETRDIPPAILHAFLRLEKTGHMPNCQFVYQNLRDVSAPGSKPRERRQLLDQPGDVSRAAAQMEKQGDGLRTLADLTFCDPEKQHIWHIPGLWHGVPPMAAVSSGYSEAIFELKRCLLENIRNGLSNQNKDIQQLLELVRRL
SIO_010081: LOC105093972
subclass of: SO_0000673
so part of: LOC105093972
location: join(5578745..5578778,5578997..5579035,5580641..5583234)
location: region:5578745-5583234:1
so has part: feature:5578745-5578778:1:exon
so has part: feature:5578997-5579035:1:exon
so has part: feature:5580641-5583234:1:exon

XP_031300879.1
type: Protein
SIO_000068: ncbiprotein

position:5578745:1
position: 5578745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5578745-5578778:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5578997-5579035:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5580641-5583234:1:exon

MRPS24
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MRPS24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5590850..5593448
location: region:5590850-5593448:1
so has part: feature:5590850-5593448:1:exon
subclass of: SO_0000010

105093966
type: Gene
SIO_000068: ncbigene

position:5590850:1
position: 5590850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5593448:1
position: 5593448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5590850-5593448:1:exon

MRPS24
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MRPS24
product: mitochondrial ribosomal protein S24
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XM_031445020.1
SIO_010081: MRPS24
subclass of: SO_0000673
so part of: MRPS24
location: join(5590850..5590985,5591066..5591134,5591342..5591453,5593014..5593448)
location: region:5590850-5593448:1
so has part: feature:5590850-5590985:1:exon
so has part: feature:5591066-5591134:1:exon
so has part: feature:5591342-5591453:1:exon
so has part: feature:5593014-5593448:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5590850-5590985:1:exon

position:5590985:1
position: 5590985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5591066-5591134:1:exon

position:5591066:1
position: 5591066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5591134:1
position: 5591134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5591342-5591453:1:exon

position:5591342:1
position: 5591342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5591453:1
position: 5591453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5593014-5593448:1:exon

position:5593014:1
position: 5593014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPS24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MRPS24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S24, mitochondrial
translation: MAAPMCSPGLRRLVLPWSRELPCVWRALHTSAVCAKNRAARVRVGKGDKPVTYEEAHAPHYIAHRKGWLSLHTSNLDGEEHAAERTVEDVFLRKFMLGTFPGCLADQLVLKRRANQLEICALVLRQLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSKVVYKYI
SIO_010081: MRPS24
subclass of: SO_0000673
so part of: MRPS24
location: join(5590947..5590985,5591066..5591134,5591342..5591453,5593014..5593297)
location: region:5590947-5593297:1
so has part: feature:5590947-5590985:1:exon
so has part: feature:5591066-5591134:1:exon
so has part: feature:5591342-5591453:1:exon
so has part: feature:5593014-5593297:1:exon

XP_031300880.1
type: Protein
SIO_000068: ncbiprotein

position:5590947:1
position: 5590947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5593297:1
position: 5593297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5590947-5590985:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5591066-5591134:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5591342-5591453:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5593014-5593297:1:exon

OOEP
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: OOEP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5941916..5943539
location: region:5941916-5943539:1
so has part: feature:5941916-5943539:1:exon
subclass of: SO_0000010

105101166
type: Gene
SIO_000068: ncbigene

position:5941916:1
position: 5941916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5943539:1
position: 5943539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5941916-5943539:1:exon

OOEP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: OOEP
product: oocyte expressed protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031445021.1
SIO_010081: OOEP
subclass of: SO_0000673
so part of: OOEP
location: join(5941916..5942551,5942746..5942925,5943177..5943539)
location: region:5941916-5943539:1
so has part: feature:5941916-5942551:1:exon
so has part: feature:5942746-5942925:1:exon
so has part: feature:5943177-5943539:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5941916-5942551:1:exon

position:5942551:1
position: 5942551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5942746-5942925:1:exon

position:5942746:1
position: 5942746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5942925:1
position: 5942925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5943177-5943539:1:exon

position:5943177:1
position: 5943177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OOEP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: OOEP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oocyte-expressed protein homolog
translation: MGDPGEAVQAQEGERTAPAQGDGLLMLPPRVLVRPWWFPAEDLENPLVFYLEAWLADQIFGPELEILPEIQWMSQALLSVNTVKSGTFVEIRVFGRPRVQLHVKSVILSLALRHKEHRAAGLRFKASTLRNDVDSTPCPPTPVKEYFETASVFPYTPEKMEHFKKFLKARAADPQPSWCPAAEVLSGAYENSPASTTVVEKGKSP
SIO_010081: OOEP
subclass of: SO_0000673
so part of: OOEP
location: join(5942371..5942551,5942746..5942925,5943177..5943433)
location: region:5942371-5943433:1
so has part: feature:5942371-5942551:1:exon
so has part: feature:5942746-5942925:1:exon
so has part: feature:5943177-5943433:1:exon

XP_031300881.1
type: Protein
SIO_000068: ncbiprotein

position:5942371:1
position: 5942371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5943433:1
position: 5943433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5942371-5942551:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5942746-5942925:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5943177-5943433:1:exon

LOC116150671
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150671
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 6168066..6168195
location: region:6168066-6168195:1
so has part: feature:6168066-6168195:1:exon
subclass of: SO_0000578

116150671
type: Gene
SIO_000068: ncbigene

position:6168066:1
position: 6168066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6168195:1
position: 6168195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6168066-6168195:1:exon

LOC116150671
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116150671
product: small nucleolar RNA SNORA18
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00425
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004134399.1
SIO_010081: LOC116150671
subclass of: SO_0000673
so part of: LOC116150671
location: 6168066..6168195
location: region:6168066-6168195:1
so has part: feature:6168066-6168195:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6168066-6168195:1:exon

LOC105099644
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105099644
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(6378115..6433900)
location: region:6378115-6433900:-1
so has part: feature:6378115-6433900:-1:exon

105099644
type: Gene
SIO_000068: ncbigene

position:6378115:-1
position: 6378115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6433900:-1
position: 6433900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6378115-6433900:-1:exon

LOC105099644
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105099644
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105099644
subclass of: SO_0000673
so part of: LOC105099644
location: complement(6378115..6378638)
location: region:6378115-6378638:-1
so has part: feature:6378115-6378638:-1:exon

position:6378638:-1
position: 6378638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6378115-6378638:-1:exon

LOC105099644
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105099644
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105099644
subclass of: SO_0000673
so part of: LOC105099644
location: complement(6401952..6401967)
location: region:6401952-6401967:-1
so has part: feature:6401952-6401967:-1:exon

position:6401952:-1
position: 6401952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6401967:-1
position: 6401967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6401952-6401967:-1:exon

LOC105099644
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105099644
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105099644
subclass of: SO_0000673
so part of: LOC105099644
location: complement(6405850..6406261)
location: region:6405850-6406261:-1
so has part: feature:6405850-6406261:-1:exon

position:6405850:-1
position: 6405850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6406261:-1
position: 6406261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6405850-6406261:-1:exon

LOC116150665
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150665
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6433462..6435612
location: region:6433462-6435612:1
so has part: feature:6433462-6435612:1:exon
subclass of: SO_0000010

116150665
type: Gene
SIO_000068: ncbigene

position:6433462:1
position: 6433462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6435612:1
position: 6435612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6433462-6435612:1:exon

LOC116150665
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116150665
product: actin, cytoplasmic 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 712 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031445022.1
SIO_010081: LOC116150665
subclass of: SO_0000673
so part of: LOC116150665
location: 6433462..6435612
location: region:6433462-6435612:1
so has part: feature:6433462-6435612:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6433462-6435612:1:exon

LOC116150665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116150665
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: actin, cytoplasmic 1-like
translation: MDDGVSVLVVDNGSGTCKAGFAGHDVPHATFPSIVGHPRYQSVMVGMGQKDSYVGDEAQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYLAIDAVLPLYASGCTTGIVMSSGDGATHIVPTYEGYALTHAILSLHMAGRDLTDFLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDLEQEMATTASSSSLEKSYELPDGQVITIGSERFCCPEALFQPSFLGLEACGIHEITFNSIMKCGINIRKDFFSNIVLSGGTTMYPGFTDRMQKEINALAPSTVKVKIIAPPERQYSVWMGGSILASLPTSQQMWISKDEYDESGPSIVHHKCF
SIO_010081: LOC116150665
subclass of: SO_0000673
so part of: LOC116150665
location: 6433569..6434696
location: region:6433569-6434696:1
so has part: feature:6433569-6434696:1:exon

XP_031300882.1
type: Protein
SIO_000068: ncbiprotein

position:6433569:1
position: 6433569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6434696:1
position: 6434696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6433569-6434696:1:exon

LOC105099644
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105099644
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 29% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105099644
subclass of: SO_0000673
so part of: LOC105099644
location: complement(6433791..6433900)
location: region:6433791-6433900:-1
so has part: feature:6433791-6433900:-1:exon

position:6433791:-1
position: 6433791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6433791-6433900:-1:exon

LOC116150640
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150640
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6450685..6451313
location: region:6450685-6451313:1
so has part: feature:6450685-6451313:1:exon

116150640
type: Gene
SIO_000068: ncbigene

position:6450685:1
position: 6450685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6451313:1
position: 6451313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6450685-6451313:1:exon

LOC116150640
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150640
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116150640
subclass of: SO_0000673
so part of: LOC116150640
location: 6450685..6450799
location: region:6450685-6450799:1
so has part: feature:6450685-6450799:1:exon

position:6450799:1
position: 6450799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6450685-6450799:1:exon

LOC116150640
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150640
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116150640
subclass of: SO_0000673
so part of: LOC116150640
location: 6450857..6451313
location: region:6450857-6451313:1
so has part: feature:6450857-6451313:1:exon

position:6450857:1
position: 6450857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6450857-6451313:1:exon

LOC116150641
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150641
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6451365..6454265
location: region:6451365-6454265:1
so has part: feature:6451365-6454265:1:exon

116150641
type: Gene
SIO_000068: ncbigene

position:6451365:1
position: 6451365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6454265:1
position: 6454265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6451365-6454265:1:exon

LOC116150641
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150641
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116150641
subclass of: SO_0000673
so part of: LOC116150641
location: 6451365..6451527
location: region:6451365-6451527:1
so has part: feature:6451365-6451527:1:exon

position:6451527:1
position: 6451527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6451365-6451527:1:exon

LOC116150641
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150641
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116150641
subclass of: SO_0000673
so part of: LOC116150641
location: 6451565..6451919
location: region:6451565-6451919:1
so has part: feature:6451565-6451919:1:exon

position:6451565:1
position: 6451565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6451919:1
position: 6451919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6451565-6451919:1:exon

LOC116150641
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116150641
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116150641
subclass of: SO_0000673
so part of: LOC116150641
location: 6454260..6454265
location: region:6454260-6454265:1
so has part: feature:6454260-6454265:1:exon

position:6454260:1
position: 6454260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6454260-6454265:1:exon

LOC116150666
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150666
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6472305..6476885
location: region:6472305-6476885:1
so has part: feature:6472305-6476885:1:exon
subclass of: SO_0000011

116150666
type: Gene
SIO_000068: ncbigene

position:6472305:1
position: 6472305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6476885:1
position: 6476885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6472305-6476885:1:exon

LOC116150666
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150666
product: uncharacterized LOC116150666, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004134393.1
SIO_010081: LOC116150666
subclass of: SO_0000673
so part of: LOC116150666
location: join(6472305..6472359,6473561..6473760,6474003..6474200,6475499..6476885)
location: region:6472305-6476885:1
so has part: feature:6472305-6472359:1:exon
so has part: feature:6473561-6473760:1:exon
so has part: feature:6474003-6474200:1:exon
so has part: feature:6475499-6476885:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6472305-6472359:1:exon

position:6472359:1
position: 6472359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6473561-6473760:1:exon

position:6473561:1
position: 6473561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6473760:1
position: 6473760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6474003-6474200:1:exon

position:6474003:1
position: 6474003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6474200:1
position: 6474200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6475499-6476885:1:exon

position:6475499:1
position: 6475499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116150666
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150666
product: uncharacterized LOC116150666, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004134392.1
SIO_010081: LOC116150666
subclass of: SO_0000673
so part of: LOC116150666
location: join(6472333..6473760,6474003..6474200,6475499..6476885)
location: region:6472333-6476885:1
so has part: feature:6472333-6473760:1:exon
so has part: feature:6474003-6474200:1:exon
so has part: feature:6475499-6476885:1:exon

position:6472333:1
position: 6472333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6472333-6473760:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6474003-6474200:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6475499-6476885:1:exon

LOC116150667
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150667
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6580384..6594088
location: region:6580384-6594088:1
so has part: feature:6580384-6594088:1:exon
subclass of: SO_0000011

116150667
type: Gene
SIO_000068: ncbigene

position:6580384:1
position: 6580384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6594088:1
position: 6594088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6580384-6594088:1:exon

LOC116150667
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150667
product: uncharacterized LOC116150667
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004134395.1
SIO_010081: LOC116150667
subclass of: SO_0000673
so part of: LOC116150667
location: join(6580384..6580782,6587779..6587785,6594077..6594088)
location: region:6580384-6594088:1
so has part: feature:6580384-6580782:1:exon
so has part: feature:6587779-6587785:1:exon
so has part: feature:6594077-6594088:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6580384-6580782:1:exon

position:6580782:1
position: 6580782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6587779-6587785:1:exon

position:6587779:1
position: 6587779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6587785:1
position: 6587785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6594077-6594088:1:exon

position:6594077:1
position: 6594077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105106140
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105106140
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6737897..7020790)
location: region:6737897-7020790:-1
so has part: feature:6737897-7020790:-1:exon
subclass of: SO_0000011

105106140
type: Gene
SIO_000068: ncbigene

position:6737897:-1
position: 6737897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7020790:-1
position: 7020790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6737897-7020790:-1:exon

LOC105106140
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105106140
product: uncharacterized LOC105106140
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004134394.1
SIO_010081: LOC105106140
subclass of: SO_0000673
so part of: LOC105106140
location: complement(join(6737897..6738010,6738759..6738953,7020675..7020790))
location: region:6737897-7020790:-1
so has part: feature:7020675-7020790:-1:exon
so has part: feature:6738759-6738953:-1:exon
so has part: feature:6737897-6738010:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7020675-7020790:-1:exon

position:7020675:-1
position: 7020675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6738759-6738953:-1:exon

position:6738759:-1
position: 6738759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6738953:-1
position: 6738953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6737897-6738010:-1:exon

position:6738010:-1
position: 6738010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRNAA-AGC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAA-AGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(6830071..6830142)
location: region:6830071-6830142:-1
so has part: feature:6830071-6830142:-1:exon
subclass of: SO_0000663

116150674
type: Gene
SIO_000068: ncbigene

position:6830071:-1
position: 6830071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6830142:-1
position: 6830142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6830071-6830142:-1:exon

TRNAA-AGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAA-AGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon AGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6830108..6830110),aa:Ala, seq:agc)
SIO_010081: TRNAA-AGC
subclass of: SO_0000673
so part of: TRNAA-AGC
location: complement(6830071..6830142)
location: region:6830071-6830142:-1
so has part: feature:6830071-6830142:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6830071-6830142:-1:exon

LOC116150668
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116150668
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6888090..6888724
location: region:6888090-6888724:1
so has part: feature:6888090-6888724:1:exon
subclass of: SO_0000011

116150668
type: Gene
SIO_000068: ncbigene

position:6888090:1
position: 6888090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6888724:1
position: 6888724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6888090-6888724:1:exon

LOC116150668
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116150668
product: uncharacterized LOC116150668
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004134396.1
SIO_010081: LOC116150668
subclass of: SO_0000673
so part of: LOC116150668
location: join(6888090..6888292,6888460..6888724)
location: region:6888090-6888724:1
so has part: feature:6888090-6888292:1:exon
so has part: feature:6888460-6888724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6888090-6888292:1:exon

position:6888292:1
position: 6888292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6888460-6888724:1:exon

position:6888460:1
position: 6888460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition