Camelus dromedarius isolate Drom800 breed African chromosome 31, CamDro3, whole genome shotgun sequence.
type: Entry
definition: Camelus dromedarius isolate Drom800 breed African chromosome 31, CamDro3, whole genome shotgun sequence.
sequence version: NC_044541.1
sequence date: 2019-10-23
sequence: sequence
division: CON
label: NC_044541.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA565028
dblink: SAMN03252735
keyword: WGS
keyword: RefSeq
source: Camelus dromedarius (Arabian camel)
organism: Camelus dromedarius
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Tylopoda; Camelidae; Camelus.
reference: 1
references: 30972949
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM016657.2.\nAssembly name: CamDro3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vetmeduni Vienna on\n2019/10/07. The original whole-genome shotgun project has the\naccession JWIN00000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vetmeduni Vienna\nAssembly Date :: FEB-2019\nAssembly Method :: ABySS v. 1.3.6; HiRise v. MAY-2017;\n PBJelly v. 15.8.24; Pilon v. 1.22; ABySS\n Sealer v. 2.0.2; HiRise v. MAY-2018;\n PBJelly v. 15.8.24; BBMAP-CallVariants v.\n 38.12; ABySS Sealer v. 2.1.0\nAssembly Name :: CamDro3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 65.0x\nSequencing Technology :: Illumina HiSeq; Dovetail Hi-C and\n Chicago; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Camelus dromedarius Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 17406307
topology: linear
so has quality: SO_0000987
location: 1..17406307
location: region:1-17406307:1
RO_0002162: 9838

NC_044541
type: RefSeq
SIO_000068: refseq

PRJNA565028
type: BioProject
SIO_000068: bioproject

SAMN03252735
type: BioSample
SIO_000068: biosample

1
title: Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary
author: Elbers, J.P.
author: Rogers, M.F.
author: Perelman, P.L.
author: Proskuryakova, A.A.
author: Serdyukova, N.A.
author: Johnson, W.E.
author: Horin, P.
author: Corander, J.
author: Murphy, D.
author: Burger, P.A.
journal: Mol Ecol Resour
volume: 19
issue: 4
pages: 1015-1026
year: 2019
pubmed: 30972949

30972949
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17406307:1
position: 17406307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17406307:1:source
so part of: sequence
organism: Camelus dromedarius
mol type: genomic DNA
isolate: Drom800
isolation source: isolated from an animal called Varis
chromosome: 31
sex: female
tissue type: blood
dev stage: adult
country: Austria: Eithental
collection date: 13-Jan-2013
collected by: Pamela Burger
breed: African

9838
type: Taxonomy
SIO_000068: taxonomy

LOC105104297
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105104297
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 82698..84914
location: region:82698-84914:1
so has part: feature:82698-84914:1:exon

105104297
type: Gene
SIO_000068: ncbigene

position:82698:1
position: 82698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84914:1
position: 84914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82698-84914:1:exon

LOC105104297
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105104297
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC105104297
subclass of: SO_0000673
so part of: LOC105104297
location: 82698..82769
location: region:82698-82769:1
so has part: feature:82698-82769:1:exon

position:82769:1
position: 82769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82698-82769:1:exon

LOC105104297
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105104297
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC105104297
subclass of: SO_0000673
so part of: LOC105104297
location: 83302..83372
location: region:83302-83372:1
so has part: feature:83302-83372:1:exon

position:83302:1
position: 83302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83372:1
position: 83372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83302-83372:1:exon

LOC105104297
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105104297
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
pseudo: true
SIO_010081: LOC105104297
subclass of: SO_0000673
so part of: LOC105104297
location: 83823..84914
location: region:83823-84914:1
so has part: feature:83823-84914:1:exon

position:83823:1
position: 83823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:83823-84914:1:exon

LOC105098588
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105098588
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 95255..204774
location: region:95255-204774:1
so has part: feature:95255-204774:1:exon
subclass of: SO_0000010

105098588
type: Gene
SIO_000068: ncbigene

position:95255:1
position: 95255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:204774:1
position: 204774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95255-204774:1:exon

LOC105098588
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105098588
product: rho GTPase-activating protein 20-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442043.1
SIO_010081: LOC105098588
subclass of: SO_0000673
so part of: LOC105098588
location: join(95255..95696,102659..102700,103605..103689,146133..146199,148568..148756,154974..155143,159937..160046,198097..198286,200133..200249,201403..204774)
location: region:95255-204774:1
so has part: feature:95255-95696:1:exon
so has part: feature:102659-102700:1:exon
so has part: feature:103605-103689:1:exon
so has part: feature:146133-146199:1:exon
so has part: feature:148568-148756:1:exon
so has part: feature:154974-155143:1:exon
so has part: feature:159937-160046:1:exon
so has part: feature:198097-198286:1:exon
so has part: feature:200133-200249:1:exon
so has part: feature:201403-204774:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95255-95696:1:exon

position:95696:1
position: 95696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:102659-102700:1:exon

position:102659:1
position: 102659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:102700:1
position: 102700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:103605-103689:1:exon

position:103605:1
position: 103605
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:103689:1
position: 103689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:146133-146199:1:exon

position:146133:1
position: 146133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:146199:1
position: 146199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:148568-148756:1:exon

position:148568:1
position: 148568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:148756:1
position: 148756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:154974-155143:1:exon

position:154974:1
position: 154974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155143:1
position: 155143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:159937-160046:1:exon

position:159937:1
position: 159937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160046:1
position: 160046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:198097-198286:1:exon

position:198097:1
position: 198097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198286:1
position: 198286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:200133-200249:1:exon

position:200133:1
position: 200133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200249:1
position: 200249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:201403-204774:1:exon

position:201403:1
position: 201403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105098588
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105098588
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:95584..95586,aa:OTHER)
transl except: (pos:159946..159948,aa:OTHER)
product: LOW QUALITY PROTEIN: rho GTPase-activating protein 20-like
translation: MISENYPFITSAEVVIKFNKPNYKKSLSGFYLSRYNNNLKIKNKIKXSDMWTASCVDEVGEGSTSAVGSFVLGWPTVSLAATFSSPEQKRKWLSLLQRYINLEKEKDYPKSIPLRVVTKDVGNCTCGSEKENKCWVNSGKEEAPYPLIGHEFPYRITMSHLQDTALLMQGLKDSPIPSNLQEPFLMEQLPEEKQCQFILKPSRLAVAQQVGDSGQKSFKRRSSIINWVLGGSSTHLDNQPCHQLSEAGRSSECLCQKFVRTQSTQTFLDFLXHIPGSVFSSDLYDHWVCVMDEGNNEEKINAVQRLLDQLPRANVILLKHLFGLLHETEKHASSSQMNAFNLAVCITPSVLWPPASSSPELESEFTRKVSLLIQFFLIENCCXIFGEEITSLLEEVSVTCDTKEKASDISCFQLNDSMENELNEEVNAPCSDLVKKLSPGSRSMDSMLTLIDYDLEQPEAEGVLTLSNFDLDGPKGEDVQVEQPSEPVPVAAAAVYRKASLQDQTSAPSGTSTPGHLSAATEDAPKTPRQQRRCSEPSIGYLGSKLSFLRAFYQKRICKSSCDAILLKKDENHLSQNPPLQEEGKTGFKMSLVTCTDVKKNATDKNDKKSLCDSKGNRVKLFPKSKPVTISYSCLSSHDRPRNQPFTADMAGYSPPCTAEPLKEVAVXCSEPSTDDRRCKLTYLRGLYSKKQQHNASCDTSLLHGEEDNLKRHKSLQMEGQKLINQSLVMGIEVGKSGATNQNTEKVFPPRLNICLRSSYSSLSSPDTSPSGSLVSSQDSAFSQISEQSVFTPTETSSPVDCTFQVRGKQEELSSDFSSSSLISGIPGPLSGQSSSHLAHTKKDSLEGHSQMHSITLHPSTRLRNGIASLKNWSLKKKSRAPRPEDNKTGSLKGPMEPPPHAPGIPEASTLQERQTDVPQRAAEGLGAVQIAQCCSSYPSQDSEKDNSSPSSLAEDGLELGMKYPEEGENDGQCFPGTLPLEGSSPSSLTMDDVSSPDSEPTVVSDAEDTHVTKDI
SIO_010081: LOC105098588
subclass of: SO_0000673
so part of: LOC105098588
location: join(95446..95696,102659..102700,103605..103689,146133..146199,148568..148756,154974..155143,159937..160046,198097..198286,200133..200249,201403..203229)
location: region:95446-203229:1
so has part: feature:95446-95696:1:exon
so has part: feature:102659-102700:1:exon
so has part: feature:103605-103689:1:exon
so has part: feature:146133-146199:1:exon
so has part: feature:148568-148756:1:exon
so has part: feature:154974-155143:1:exon
so has part: feature:159937-160046:1:exon
so has part: feature:198097-198286:1:exon
so has part: feature:200133-200249:1:exon
so has part: feature:201403-203229:1:exon

XP_031297903.1
type: Protein
SIO_000068: ncbiprotein

position:95446:1
position: 95446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:203229:1
position: 203229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95446-95696:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:102659-102700:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:103605-103689:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:146133-146199:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:148568-148756:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:154974-155143:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:159937-160046:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:198097-198286:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:200133-200249:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:201403-203229:1:exon

LOC116149868
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149868
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 98484..101522
location: region:98484-101522:1
so has part: feature:98484-101522:1:exon

116149868
type: Gene
SIO_000068: ncbigene

position:98484:1
position: 98484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:101522:1
position: 101522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:98484-101522:1:exon

LOC116149868
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149868
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149868
subclass of: SO_0000673
so part of: LOC116149868
location: 98484..101522
location: region:98484-101522:1
so has part: feature:98484-101522:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:98484-101522:1:exon

LOC116149867
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149867
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 121220..122191
location: region:121220-122191:1
so has part: feature:121220-122191:1:exon

116149867
type: Gene
SIO_000068: ncbigene

position:121220:1
position: 121220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:122191:1
position: 122191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121220-122191:1:exon

LOC116149867
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149867
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
pseudo: true
SIO_010081: LOC116149867
subclass of: SO_0000673
so part of: LOC116149867
location: 121220..122191
location: region:121220-122191:1
so has part: feature:121220-122191:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:121220-122191:1:exon

LOC116149856
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149856
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(216994..218254)
location: region:216994-218254:-1
so has part: feature:216994-218254:-1:exon

116149856
type: Gene
SIO_000068: ncbigene

position:216994:-1
position: 216994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218254:-1
position: 218254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:216994-218254:-1:exon

LOC116149856
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149856
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149856
subclass of: SO_0000673
so part of: LOC116149856
location: complement(216994..218254)
location: region:216994-218254:-1
so has part: feature:216994-218254:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:216994-218254:-1:exon

LOC116149843
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149843
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(228908..250194)
location: region:228908-250194:-1
so has part: feature:228908-250194:-1:exon

116149843
type: Gene
SIO_000068: ncbigene

position:228908:-1
position: 228908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:250194:-1
position: 250194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228908-250194:-1:exon

LOC116149843
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149843
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149843
subclass of: SO_0000673
so part of: LOC116149843
location: complement(228908..229887)
location: region:228908-229887:-1
so has part: feature:228908-229887:-1:exon

position:229887:-1
position: 229887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228908-229887:-1:exon

LOC116149843
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149843
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149843
subclass of: SO_0000673
so part of: LOC116149843
location: complement(246525..246586)
location: region:246525-246586:-1
so has part: feature:246525-246586:-1:exon

position:246525:-1
position: 246525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246586:-1
position: 246586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246525-246586:-1:exon

LOC116149843
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149843
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149843
subclass of: SO_0000673
so part of: LOC116149843
location: complement(246681..246819)
location: region:246681-246819:-1
so has part: feature:246681-246819:-1:exon

position:246681:-1
position: 246681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246819:-1
position: 246819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:246681-246819:-1:exon

LOC116149843
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149843
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 62% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149843
subclass of: SO_0000673
so part of: LOC116149843
location: complement(250159..250194)
location: region:250159-250194:-1
so has part: feature:250159-250194:-1:exon

position:250159:-1
position: 250159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250159-250194:-1:exon

LOC116147072
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116147072
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 254551..271319
location: region:254551-271319:1
so has part: feature:254551-271319:1:exon
subclass of: SO_0000011

116147072
type: Gene
SIO_000068: ncbigene

position:254551:1
position: 254551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:271319:1
position: 271319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:254551-271319:1:exon

LOC116147072
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116147072
product: uncharacterized LOC116147072
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133441.1
SIO_010081: LOC116147072
subclass of: SO_0000673
so part of: LOC116147072
location: join(254551..255294,269539..269635,270896..271319)
location: region:254551-271319:1
so has part: feature:254551-255294:1:exon
so has part: feature:269539-269635:1:exon
so has part: feature:270896-271319:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:254551-255294:1:exon

position:255294:1
position: 255294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:269539-269635:1:exon

position:269539:1
position: 269539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:269635:1
position: 269635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:270896-271319:1:exon

position:270896:1
position: 270896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105095515
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 274836..285764
location: region:274836-285764:1
so has part: feature:274836-285764:1:exon

105095515
type: Gene
SIO_000068: ncbigene

position:274836:1
position: 274836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285764:1
position: 285764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274836-285764:1:exon

LOC105095515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105095515
subclass of: SO_0000673
so part of: LOC105095515
location: 274836..274869
location: region:274836-274869:1
so has part: feature:274836-274869:1:exon

position:274869:1
position: 274869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274836-274869:1:exon

LOC105095515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105095515
subclass of: SO_0000673
so part of: LOC105095515
location: 275410..275558
location: region:275410-275558:1
so has part: feature:275410-275558:1:exon

position:275410:1
position: 275410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:275558:1
position: 275558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:275410-275558:1:exon

LOC105095515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105095515
subclass of: SO_0000673
so part of: LOC105095515
location: 276499..277040
location: region:276499-277040:1
so has part: feature:276499-277040:1:exon

position:276499:1
position: 276499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:277040:1
position: 277040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:276499-277040:1:exon

LOC105095515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105095515
subclass of: SO_0000673
so part of: LOC105095515
location: 278948..279136
location: region:278948-279136:1
so has part: feature:278948-279136:1:exon

position:278948:1
position: 278948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:279136:1
position: 279136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:278948-279136:1:exon

LOC105095515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105095515
subclass of: SO_0000673
so part of: LOC105095515
location: 281490..281876
location: region:281490-281876:1
so has part: feature:281490-281876:1:exon

position:281490:1
position: 281490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:281876:1
position: 281876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281490-281876:1:exon

LOC105095515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105095515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105095515
subclass of: SO_0000673
so part of: LOC105095515
location: 284992..285764
location: region:284992-285764:1
so has part: feature:284992-285764:1:exon

position:284992:1
position: 284992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284992-285764:1:exon

LOC116149869
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149869
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(295469..304643)
location: region:295469-304643:-1
so has part: feature:295469-304643:-1:exon
subclass of: SO_0000011

116149869
type: Gene
SIO_000068: ncbigene

position:295469:-1
position: 295469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304643:-1
position: 304643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:295469-304643:-1:exon

LOC116149869
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149869
product: uncharacterized LOC116149869
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004133442.1
SIO_010081: LOC116149869
subclass of: SO_0000673
so part of: LOC116149869
location: complement(join(295469..296245,298771..304643))
location: region:295469-304643:-1
so has part: feature:298771-304643:-1:exon
so has part: feature:295469-296245:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:298771-304643:-1:exon

position:298771:-1
position: 298771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:295469-296245:-1:exon

position:296245:-1
position: 296245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149844
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149844
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(375038..400920)
location: region:375038-400920:-1
so has part: feature:375038-400920:-1:exon
subclass of: SO_0000010

116149844
type: Gene
SIO_000068: ncbigene

position:375038:-1
position: 375038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:400920:-1
position: 400920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:375038-400920:-1:exon

LOC116149844
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149844
product: adhesion G protein-coupled receptor B1-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442044.1
SIO_010081: LOC116149844
subclass of: SO_0000673
so part of: LOC116149844
location: complement(join(375038..375584,398840..399445,400876..400920))
location: region:375038-400920:-1
so has part: feature:400876-400920:-1:exon
so has part: feature:398840-399445:-1:exon
so has part: feature:375038-375584:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:400876-400920:-1:exon

position:400876:-1
position: 400876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:398840-399445:-1:exon

position:398840:-1
position: 398840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:399445:-1
position: 399445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:375038-375584:-1:exon

position:375584:-1
position: 375584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149844
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149844
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: adhesion G protein-coupled receptor B1-like
translation: MCTDSRAEVLAPGGQDEGPGTAPGTHWIFHPLLLLLLGHQERVSLGADVVPGAEPCPTLMLGKFLGYFLATAEFLASISCCSWMLRNPDPHHRKLYMRVAEAPXCSSPARIRTYQFDSFVESTRTYLGRESCDEVLRLCDPLGPLAFLQASKQFLQIKGQQPPQDSSAGPRVGPSYSSNDFSVEHLVTGNGSSSDMAGGPENCLTSLTQDQGGDALQPSPTWTLEKRLVVGSSSSTV
SIO_010081: LOC116149844
subclass of: SO_0000673
so part of: LOC116149844
location: complement(join(375522..375584,398840..399445,400876..400920))
location: region:375522-400920:-1
so has part: feature:400876-400920:-1:exon
so has part: feature:398840-399445:-1:exon
so has part: feature:375522-375584:-1:exon

XP_031297904.1
type: Protein
SIO_000068: ncbiprotein

position:375522:-1
position: 375522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:400876-400920:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:398840-399445:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:375522-375584:-1:exon

LOC105100882
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105100882
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(416222..417544)
location: region:416222-417544:-1
so has part: feature:416222-417544:-1:exon

105100882
type: Gene
SIO_000068: ncbigene

position:416222:-1
position: 416222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:417544:-1
position: 417544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:416222-417544:-1:exon

LOC105100882
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105100882
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105100882
subclass of: SO_0000673
so part of: LOC105100882
location: complement(416222..417544)
location: region:416222-417544:-1
so has part: feature:416222-417544:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:416222-417544:-1:exon

LOC105106374
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105106374
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 418822..419543
location: region:418822-419543:1
so has part: feature:418822-419543:1:exon

105106374
type: Gene
SIO_000068: ncbigene

position:418822:1
position: 418822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419543:1
position: 419543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418822-419543:1:exon

LOC105106374
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105106374
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105106374
subclass of: SO_0000673
so part of: LOC105106374
location: 418822..419543
location: region:418822-419543:1
so has part: feature:418822-419543:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:418822-419543:1:exon

LOC116149870
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149870
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(421413..426934)
location: region:421413-426934:-1
so has part: feature:421413-426934:-1:exon
subclass of: SO_0000011

116149870
type: Gene
SIO_000068: ncbigene

position:421413:-1
position: 421413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:426934:-1
position: 426934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:421413-426934:-1:exon

LOC116149870
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149870
product: uncharacterized LOC116149870
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_004133443.1
SIO_010081: LOC116149870
subclass of: SO_0000673
so part of: LOC116149870
location: complement(join(421413..422048,425319..425431,426239..426934))
location: region:421413-426934:-1
so has part: feature:426239-426934:-1:exon
so has part: feature:425319-425431:-1:exon
so has part: feature:421413-422048:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:426239-426934:-1:exon

position:426239:-1
position: 426239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:425319-425431:-1:exon

position:425319:-1
position: 425319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:425431:-1
position: 425431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:421413-422048:-1:exon

position:422048:-1
position: 422048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149871
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149871
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(475608..484723)
location: region:475608-484723:-1
so has part: feature:475608-484723:-1:exon
subclass of: SO_0000011

116149871
type: Gene
SIO_000068: ncbigene

position:475608:-1
position: 475608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:484723:-1
position: 484723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:475608-484723:-1:exon

LOC116149871
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149871
product: uncharacterized LOC116149871
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XR_004133444.1
SIO_010081: LOC116149871
subclass of: SO_0000673
so part of: LOC116149871
location: complement(join(475608..475619,477658..477663,484503..484723))
location: region:475608-484723:-1
so has part: feature:484503-484723:-1:exon
so has part: feature:477658-477663:-1:exon
so has part: feature:475608-475619:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:484503-484723:-1:exon

position:484503:-1
position: 484503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:477658-477663:-1:exon

position:477658:-1
position: 477658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:477663:-1
position: 477663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:475608-475619:-1:exon

position:475619:-1
position: 475619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SPOCK3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SPOCK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(512571..655687)
location: region:512571-655687:-1
so has part: feature:512571-655687:-1:exon
subclass of: SO_0000010

105100880
type: Gene
SIO_000068: ncbigene

position:512571:-1
position: 512571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:655687:-1
position: 655687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:512571-655687:-1:exon

SPOCK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SPOCK3
product: SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031442066.1
SIO_010081: SPOCK3
subclass of: SO_0000673
so part of: SPOCK3
location: complement(join(512571..515010,517006..517125,519879..519941,524725..524946,532008..532127,562862..562976,573349..573448,593003..593117,613444..613489,613595..613603,655378..655687))
location: region:512571-655687:-1
so has part: feature:655378-655687:-1:exon
so has part: feature:613595-613603:-1:exon
so has part: feature:613444-613489:-1:exon
so has part: feature:593003-593117:-1:exon
so has part: feature:573349-573448:-1:exon
so has part: feature:562862-562976:-1:exon
so has part: feature:532008-532127:-1:exon
so has part: feature:524725-524946:-1:exon
so has part: feature:519879-519941:-1:exon
so has part: feature:517006-517125:-1:exon
so has part: feature:512571-515010:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:655378-655687:-1:exon

position:655378:-1
position: 655378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:613595-613603:-1:exon

position:613595:-1
position: 613595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613603:-1
position: 613603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:613444-613489:-1:exon

position:613444:-1
position: 613444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:613489:-1
position: 613489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:593003-593117:-1:exon

position:593003:-1
position: 593003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:593117:-1
position: 593117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:573349-573448:-1:exon

position:573349:-1
position: 573349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573448:-1
position: 573448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:562862-562976:-1:exon

position:562862:-1
position: 562862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:562976:-1
position: 562976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:532008-532127:-1:exon

position:532008:-1
position: 532008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:532127:-1
position: 532127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:524725-524946:-1:exon

position:524725:-1
position: 524725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:524946:-1
position: 524946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:519879-519941:-1:exon

position:519879:-1
position: 519879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:519941:-1
position: 519941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:517006-517125:-1:exon

position:517006:-1
position: 517006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:517125:-1
position: 517125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:512571-515010:-1:exon

position:515010:-1
position: 515010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SPOCK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SPOCK3
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: testican-3
translation: MLRAPAVLCVCAAAWCAQALXAAVGRPASGNFLDDKQWLSTVSQYDREAGQWNRFRDEVEDDYFRTWSPGKTFEPALDPAEDPCLKVKCSHHEVCTVRGPHAAVCVGQRRLPHRTKDAAVRHKWCKQCPGVSTSPVCGSDGHTYSSQCKLEYQACVLGKQISVRCEGHCPCPSGTTTSTSRNAKRACSALELREVASRLRDWFKALHESGGQNTDSRASLRLERSRFDTSILPICKDSLGWMFNRLDTNYDLLLDPSELGSMYLDKNEPCAEAFFNSCDTYRDRCISNNEWCACFQRQQAPPCQTERSSHRKRLEVKKFLGQYIPQCDEDGYYKPRQCRSGAGPCWCVDRYGNEVAGADCAVDFETSGDFASGDFREWAGDMGEDGVTRGEDEIGDDEEEEGDDDDGGDQDGYV
SIO_010081: SPOCK3
subclass of: SO_0000673
so part of: SPOCK3
location: complement(join(514847..515010,517006..517125,519879..519941,524725..524946,532008..532127,562862..562976,573349..573448,593003..593117,613444..613489,613595..613603,655378..655547))
location: region:514847-655547:-1
so has part: feature:655378-655547:-1:exon
so has part: feature:613595-613603:-1:exon
so has part: feature:613444-613489:-1:exon
so has part: feature:593003-593117:-1:exon
so has part: feature:573349-573448:-1:exon
so has part: feature:562862-562976:-1:exon
so has part: feature:532008-532127:-1:exon
so has part: feature:524725-524946:-1:exon
so has part: feature:519879-519941:-1:exon
so has part: feature:517006-517125:-1:exon
so has part: feature:514847-515010:-1:exon

XP_031297926.1
type: Protein
SIO_000068: ncbiprotein

position:514847:-1
position: 514847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:655547:-1
position: 655547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:655378-655547:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:613595-613603:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:613444-613489:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:593003-593117:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:573349-573448:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:562862-562976:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:532008-532127:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:524725-524946:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:519879-519941:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:517006-517125:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:514847-515010:-1:exon

LOC105100879
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105100879
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(673143..674264)
location: region:673143-674264:-1
so has part: feature:673143-674264:-1:exon

105100879
type: Gene
SIO_000068: ncbigene

position:673143:-1
position: 673143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674264:-1
position: 674264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673143-674264:-1:exon

LOC105100879
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105100879
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105100879
subclass of: SO_0000673
so part of: LOC105100879
location: complement(673143..674264)
location: region:673143-674264:-1
so has part: feature:673143-674264:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:673143-674264:-1:exon

LOC105100878
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105100878
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 705691..706996
location: region:705691-706996:1
so has part: feature:705691-706996:1:exon

105100878
type: Gene
SIO_000068: ncbigene

position:705691:1
position: 705691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:706996:1
position: 706996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:705691-706996:1:exon

LOC105100878
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105100878
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105100878
subclass of: SO_0000673
so part of: LOC105100878
location: 705691..706996
location: region:705691-706996:1
so has part: feature:705691-706996:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:705691-706996:1:exon

ANXA10
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ANXA10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 736137..787472
location: region:736137-787472:1
so has part: feature:736137-787472:1:exon
subclass of: SO_0000010

105101609
type: Gene
SIO_000068: ncbigene

position:736137:1
position: 736137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:787472:1
position: 787472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736137-787472:1:exon

ANXA10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ANXA10
product: annexin A10, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031442067.1
SIO_010081: ANXA10
subclass of: SO_0000673
so part of: ANXA10
location: join(736137..736372,755580..755661,760982..761076,771056..771169,772545..772635,773769..773848,779987..780040,780126..780219,780876..780971,782822..782880,785160..785282,787224..787472)
location: region:736137-787472:1
so has part: feature:736137-736372:1:exon
so has part: feature:755580-755661:1:exon
so has part: feature:760982-761076:1:exon
so has part: feature:771056-771169:1:exon
so has part: feature:772545-772635:1:exon
so has part: feature:773769-773848:1:exon
so has part: feature:779987-780040:1:exon
so has part: feature:780126-780219:1:exon
so has part: feature:780876-780971:1:exon
so has part: feature:782822-782880:1:exon
so has part: feature:785160-785282:1:exon
so has part: feature:787224-787472:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736137-736372:1:exon

position:736372:1
position: 736372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:755580-755661:1:exon

position:755580:1
position: 755580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:755661:1
position: 755661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:760982-761076:1:exon

position:760982:1
position: 760982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:761076:1
position: 761076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:771056-771169:1:exon

position:771056:1
position: 771056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:771169:1
position: 771169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:772545-772635:1:exon

position:772545:1
position: 772545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:772635:1
position: 772635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:773769-773848:1:exon

position:773769:1
position: 773769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:773848:1
position: 773848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:779987-780040:1:exon

position:779987:1
position: 779987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:780040:1
position: 780040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:780126-780219:1:exon

position:780126:1
position: 780126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:780219:1
position: 780219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:780876-780971:1:exon

position:780876:1
position: 780876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:780971:1
position: 780971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:782822-782880:1:exon

position:782822:1
position: 782822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:782880:1
position: 782880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:785160-785282:1:exon

position:785160:1
position: 785160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:785282:1
position: 785282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:787224-787472:1:exon

position:787224:1
position: 787224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ANXA10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ANXA10
product: annexin A10, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_031442068.1
SIO_010081: ANXA10
subclass of: SO_0000673
so part of: ANXA10
location: join(736137..736372,760982..761076,771056..771169,772545..772635,773769..773848,779987..780040,780126..780219,780876..780971,782822..782880,785160..785282,787224..787472)
location: region:736137-787472:1
so has part: feature:736137-736372:1:exon
so has part: feature:760982-761076:1:exon
so has part: feature:771056-771169:1:exon
so has part: feature:772545-772635:1:exon
so has part: feature:773769-773848:1:exon
so has part: feature:779987-780040:1:exon
so has part: feature:780126-780219:1:exon
so has part: feature:780876-780971:1:exon
so has part: feature:782822-782880:1:exon
so has part: feature:785160-785282:1:exon
so has part: feature:787224-787472:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:736137-736372:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:760982-761076:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:771056-771169:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:772545-772635:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:773769-773848:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:779987-780040:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:780126-780219:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:780876-780971:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:782822-782880:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:785160-785282:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:787224-787472:1:exon

ANXA10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ANXA10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: annexin A10 isoform X1
translation: MFCGDYVQGTIFPAPNFNPVMDAQVLEGALQGFDCDKDLLLDILTQRSGAQRQVIAEAYQGMCGRDLLGDLKEKLSGHFKDVMVGLMYPPPSYDAHELWHAMKGAGTEENCLIDILASRTNGEIFQMREAYYMQYSSDLQEDIYSETSGHFRDTLVNLVQGTREEGYADPAVAAQDAVVLWEACQQRTGEHKTLLQVILCTKSYQQLWLVFQEFQNISGQDIVDAINECYDGYFQELLVAIVLCVRDKPAYFAYRLYSAIHDFGFHNKTVIRIIIARSEIDLMTIRKRYKERYGKSLFHDIKNFASGHYEKALLALCAGDAEDY
SIO_010081: ANXA10
subclass of: SO_0000673
so part of: ANXA10
location: join(736355..736372,755580..755661,760982..761076,771056..771169,772545..772635,773769..773848,779987..780040,780126..780219,780876..780971,782822..782880,785160..785282,787224..787292)
location: region:736355-787292:1
so has part: feature:736355-736372:1:exon
so has part: feature:755580-755661:1:exon
so has part: feature:760982-761076:1:exon
so has part: feature:771056-771169:1:exon
so has part: feature:772545-772635:1:exon
so has part: feature:773769-773848:1:exon
so has part: feature:779987-780040:1:exon
so has part: feature:780126-780219:1:exon
so has part: feature:780876-780971:1:exon
so has part: feature:782822-782880:1:exon
so has part: feature:785160-785282:1:exon
so has part: feature:787224-787292:1:exon

XP_031297927.1
type: Protein
SIO_000068: ncbiprotein

position:736355:1
position: 736355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:787292:1
position: 787292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:736355-736372:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:755580-755661:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:760982-761076:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:771056-771169:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:772545-772635:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:773769-773848:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:779987-780040:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:780126-780219:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:780876-780971:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:782822-782880:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:785160-785282:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:787224-787292:1:exon

ANXA10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ANXA10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: annexin A10 isoform X2
translation: MCGRDLLGDLKEKLSGHFKDVMVGLMYPPPSYDAHELWHAMKGAGTEENCLIDILASRTNGEIFQMREAYYMQYSSDLQEDIYSETSGHFRDTLVNLVQGTREEGYADPAVAAQDAVVLWEACQQRTGEHKTLLQVILCTKSYQQLWLVFQEFQNISGQDIVDAINECYDGYFQELLVAIVLCVRDKPAYFAYRLYSAIHDFGFHNKTVIRIIIARSEIDLMTIRKRYKERYGKSLFHDIKNFASGHYEKALLALCAGDAEDY
SIO_010081: ANXA10
subclass of: SO_0000673
so part of: ANXA10
location: join(761065..761076,771056..771169,772545..772635,773769..773848,779987..780040,780126..780219,780876..780971,782822..782880,785160..785282,787224..787292)
location: region:761065-787292:1
so has part: feature:761065-761076:1:exon
so has part: feature:771056-771169:1:exon
so has part: feature:772545-772635:1:exon
so has part: feature:773769-773848:1:exon
so has part: feature:779987-780040:1:exon
so has part: feature:780126-780219:1:exon
so has part: feature:780876-780971:1:exon
so has part: feature:782822-782880:1:exon
so has part: feature:785160-785282:1:exon
so has part: feature:787224-787292:1:exon

XP_031297928.1
type: Protein
SIO_000068: ncbiprotein

position:761065:1
position: 761065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:761065-761076:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:771056-771169:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:772545-772635:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:773769-773848:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:779987-780040:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:780126-780219:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:780876-780971:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:782822-782880:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:785160-785282:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:787224-787292:1:exon

LOC105101619
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(789684..>795824)
location: region:789684-795824:-1
so has part: feature:789684-795824:-1:exon
subclass of: SO_0000010

105101619
type: Gene
SIO_000068: ncbigene

position:789684:-1
position: 789684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:795824:-1
position: 795824
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:789684-795824:-1:exon

LOC105101619
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101619
product: probable ATP-dependent RNA helicase DDX60
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 32% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442045.1
SIO_010081: LOC105101619
subclass of: SO_0000673
so part of: LOC105101619
location: complement(join(789684..789769,790295..790405,790502..790638,791474..791588,794525..794621,795681..>795824))
location: region:789684-795824:-1
so has part: feature:795681-795824:-1:exon
so has part: feature:794525-794621:-1:exon
so has part: feature:791474-791588:-1:exon
so has part: feature:790502-790638:-1:exon
so has part: feature:790295-790405:-1:exon
so has part: feature:789684-789769:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:795681-795824:-1:exon

position:795681:-1
position: 795681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:794525-794621:-1:exon

position:794525:-1
position: 794525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:794621:-1
position: 794621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:791474-791588:-1:exon

position:791474:-1
position: 791474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:791588:-1
position: 791588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:790502-790638:-1:exon

position:790502:-1
position: 790502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:790638:-1
position: 790638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:790295-790405:-1:exon

position:790295:-1
position: 790295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:790405:-1
position: 790405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:789684-789769:-1:exon

position:789769:-1
position: 789769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101619
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable ATP-dependent RNA helicase DDX60
translation: WKAFLINQALVNQVAATVQNRFNKNLPSGEALCGVFTRDYRHDALNSQVLVTVPACFEILLLAPHRQAWVKRIRYVIFDEVHCLAGEIRAEVWEHLLVMIRCPFLALSASISNPQHLTEWPQKRCWRQADSTMAKNAASQKSSGPRTGVHRDYALPKQSYKVRLVLYRERYNDLEKHVCSVRDGVIHFDHFHLCAVLTTDHVQRVGVCPEISLSLVLFSLWEGQQFCGH
SIO_010081: LOC105101619
subclass of: SO_0000673
so part of: LOC105101619
location: complement(join(789684..789769,790295..790405,790502..790638,791474..791588,794525..794621,795681..>795824))
location: region:789684-795824:-1
so has part: feature:795681-795824:-1:exon
so has part: feature:794525-794621:-1:exon
so has part: feature:791474-791588:-1:exon
so has part: feature:790502-790638:-1:exon
so has part: feature:790295-790405:-1:exon
so has part: feature:789684-789769:-1:exon

XP_031297905.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:795681-795824:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:794525-794621:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:791474-791588:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:790502-790638:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:790295-790405:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:789684-789769:-1:exon

LOC116147102
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116147102
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(807549..809655)
location: region:807549-809655:-1
so has part: feature:807549-809655:-1:exon
subclass of: SO_0000011

116147102
type: Gene
SIO_000068: ncbigene

position:807549:-1
position: 807549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:809655:-1
position: 809655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:807549-809655:-1:exon

LOC116147102
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116147102
product: uncharacterized LOC116147102
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_004133431.1
SIO_010081: LOC116147102
subclass of: SO_0000673
so part of: LOC116147102
location: complement(join(807549..808203,809486..809655))
location: region:807549-809655:-1
so has part: feature:809486-809655:-1:exon
so has part: feature:807549-808203:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:809486-809655:-1:exon

position:809486:-1
position: 809486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:807549-808203:-1:exon

position:808203:-1
position: 808203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149857
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149857
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 823330..827151
location: region:823330-827151:1
so has part: feature:823330-827151:1:exon
subclass of: SO_0000011

116149857
type: Gene
SIO_000068: ncbigene

position:823330:1
position: 823330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:827151:1
position: 827151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:823330-827151:1:exon

LOC116149857
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149857
product: uncharacterized LOC116149857
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133432.1
SIO_010081: LOC116149857
subclass of: SO_0000673
so part of: LOC116149857
location: join(823330..823506,823981..824040,826262..827151)
location: region:823330-827151:1
so has part: feature:823330-823506:1:exon
so has part: feature:823981-824040:1:exon
so has part: feature:826262-827151:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:823330-823506:1:exon

position:823506:1
position: 823506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:823981-824040:1:exon

position:823981:1
position: 823981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:824040:1
position: 824040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:826262-827151:1:exon

position:826262:1
position: 826262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101610
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101610
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 832004..1082216
location: region:832004-1082216:1
so has part: feature:832004-1082216:1:exon
subclass of: SO_0000010

105101610
type: Gene
SIO_000068: ncbigene

position:832004:1
position: 832004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1082216:1
position: 1082216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:832004-1082216:1:exon

LOC105101610
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101610
product: palladin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031442046.1
SIO_010081: LOC105101610
subclass of: SO_0000673
so part of: LOC105101610
location: join(832004..832982,833511..834479,948975..949153,953620..953686,954942..955047,957407..957481,960060..960201,960694..960717,970855..970974,972707..973043,1081799..1082216)
location: region:832004-1082216:1
so has part: feature:832004-832982:1:exon
so has part: feature:833511-834479:1:exon
so has part: feature:948975-949153:1:exon
so has part: feature:953620-953686:1:exon
so has part: feature:954942-955047:1:exon
so has part: feature:957407-957481:1:exon
so has part: feature:960060-960201:1:exon
so has part: feature:960694-960717:1:exon
so has part: feature:970855-970974:1:exon
so has part: feature:972707-973043:1:exon
so has part: feature:1081799-1082216:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:832004-832982:1:exon

position:832982:1
position: 832982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:833511-834479:1:exon

position:833511:1
position: 833511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834479:1
position: 834479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:948975-949153:1:exon

position:948975:1
position: 948975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:949153:1
position: 949153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:953620-953686:1:exon

position:953620:1
position: 953620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:953686:1
position: 953686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:954942-955047:1:exon

position:954942:1
position: 954942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:955047:1
position: 955047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:957407-957481:1:exon

position:957407:1
position: 957407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:957481:1
position: 957481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:960060-960201:1:exon

position:960060:1
position: 960060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:960201:1
position: 960201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:960694-960717:1:exon

position:960694:1
position: 960694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:960717:1
position: 960717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:970855-970974:1:exon

position:970855:1
position: 970855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:970974:1
position: 970974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:972707-973043:1:exon

position:972707:1
position: 972707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:973043:1
position: 973043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1081799-1082216:1:exon

position:1081799:1
position: 1081799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101610
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palladin-like
translation: MSETSSPDSFYDSLSDVQEDDRDAAFFPGLSAFLSQEEIHRSLDLARRAIANSEAEDCASETEIPQVVSRSPGSLCGRPSHQEGGGSGEPTAPGRPLDPRPTRGQPPPAERAGHVASPGPRRRAAASPLLASPSYIRSLRRAGKHRAQPPDPSATPRAPHPGRAGPQSQLCDKAASFIQELTSIFREAARPRNSSPNGESSPDSGYLSPKNQPLALESTSASRSPNGDGQEEEAARLPEPRMRTSPPARDAVQPCGRSPPPPPSARSLPTAPRFTQKLRSQEVAEGSRVYLECRVAGHPPPRVRWFCEGRELHDSPDIQIRCAGGDLHTLVIAEAFEDDTGRYTCLATNPSGSDTTSAEVFIEGASSTDSDSESSAFRARPGAMPQAQKKTTSVSLTIGSSSPKTGVTTAVIQPLSVPVQQAPSPASCLCRPDGPPAASFPPVFTKELQNIAASEGQVVVLECRVRGAPPLQVRWFRQGSEIQDSPDFRILQKKPRSTAEPEEICTLVIAETFPEDAGIFTCSASNDYGSVTSTAQLVVTSANMENCGYDSAGEAGSDHFQHLPPPPPVWETGPFELASKKPAELQQVNSPETGLSTAALQPSSPDREARGVHPGHGVNGLINGKADGSVSPPAPAGLPSPAKEPPPVLARPKLDALRIQQLQHQIRLEREARARPSPPASPDPRPRARAGAHEARSCRPPRAPPCRPPALQLTRAPSISIAARAWAPARPTPAPGAPGPPAAVLPLALSRGPRRGWLAPVPVLAPPPLPPSSLALVLRLFPKHHSASPVHR
SIO_010081: LOC105101610
subclass of: SO_0000673
so part of: LOC105101610
location: join(833569..834479,948975..949153,953620..953686,954942..955047,957407..957481,960060..960201,960694..960717,970855..970974,972707..973043,1081799..1082216)
location: region:833569-1082216:1
so has part: feature:833569-834479:1:exon
so has part: feature:948975-949153:1:exon
so has part: feature:953620-953686:1:exon
so has part: feature:954942-955047:1:exon
so has part: feature:957407-957481:1:exon
so has part: feature:960060-960201:1:exon
so has part: feature:960694-960717:1:exon
so has part: feature:970855-970974:1:exon
so has part: feature:972707-973043:1:exon
so has part: feature:1081799-1082216:1:exon

XP_031297906.1
type: Protein
SIO_000068: ncbiprotein

position:833569:1
position: 833569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:833569-834479:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:948975-949153:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:953620-953686:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:954942-955047:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:957407-957481:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:960060-960201:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:960694-960717:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:970855-970974:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:972707-973043:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1081799-1082216:1:exon

LOC116149873
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149873
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 834486..849704
location: region:834486-849704:1
so has part: feature:834486-849704:1:exon
subclass of: SO_0000011

116149873
type: Gene
SIO_000068: ncbigene

position:834486:1
position: 834486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:849704:1
position: 849704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:834486-849704:1:exon

LOC116149873
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149873
product: uncharacterized LOC116149873
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133449.1
SIO_010081: LOC116149873
subclass of: SO_0000673
so part of: LOC116149873
location: join(834486..844328,845026..847506,847623..849704)
location: region:834486-849704:1
so has part: feature:834486-844328:1:exon
so has part: feature:845026-847506:1:exon
so has part: feature:847623-849704:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:834486-844328:1:exon

position:844328:1
position: 844328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:845026-847506:1:exon

position:845026:1
position: 845026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:847506:1
position: 847506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:847623-849704:1:exon

position:847623:1
position: 847623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PALLD
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: PALLD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1086656..1113227
location: region:1086656-1113227:1
so has part: feature:1086656-1113227:1:exon
subclass of: SO_0000010

105101612
type: Gene
SIO_000068: ncbigene

position:1086656:1
position: 1086656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1113227:1
position: 1113227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1086656-1113227:1:exon

PALLD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PALLD
product: palladin, cytoskeletal associated protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_031442070.1
SIO_010081: PALLD
subclass of: SO_0000673
so part of: PALLD
location: join(1086656..1086795,1089620..1089718,1090450..1090500,1091569..1091790,1094867..1095016,1102356..1102450,1105034..1105166,1107650..1107857,1109415..1109580,1110061..1110194,1111250..1113227)
location: region:1086656-1113227:1
so has part: feature:1086656-1086795:1:exon
so has part: feature:1089620-1089718:1:exon
so has part: feature:1090450-1090500:1:exon
so has part: feature:1091569-1091790:1:exon
so has part: feature:1094867-1095016:1:exon
so has part: feature:1102356-1102450:1:exon
so has part: feature:1105034-1105166:1:exon
so has part: feature:1107650-1107857:1:exon
so has part: feature:1109415-1109580:1:exon
so has part: feature:1110061-1110194:1:exon
so has part: feature:1111250-1113227:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1086656-1086795:1:exon

position:1086795:1
position: 1086795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1089620-1089718:1:exon

position:1089620:1
position: 1089620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1089718:1
position: 1089718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1090450-1090500:1:exon

position:1090450:1
position: 1090450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1090500:1
position: 1090500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1091569-1091790:1:exon

position:1091569:1
position: 1091569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1091790:1
position: 1091790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1094867-1095016:1:exon

position:1094867:1
position: 1094867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1095016:1
position: 1095016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1102356-1102450:1:exon

position:1102356:1
position: 1102356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1102450:1
position: 1102450
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1105034-1105166:1:exon

position:1105034:1
position: 1105034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1105166:1
position: 1105166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1107650-1107857:1:exon

position:1107650:1
position: 1107650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1107857:1
position: 1107857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1109415-1109580:1:exon

position:1109415:1
position: 1109415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1109580:1
position: 1109580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1110061-1110194:1:exon

position:1110061:1
position: 1110061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1110194:1
position: 1110194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1111250-1113227:1:exon

position:1111250:1
position: 1111250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PALLD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PALLD
product: palladin, cytoskeletal associated protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
transcript id: XM_031442071.1
SIO_010081: PALLD
subclass of: SO_0000673
so part of: PALLD
location: join(1086656..1086795,1089620..1089718,1091569..1091790,1094867..1095016,1102356..1102450,1105034..1105166,1107650..1107857,1109415..1109580,1110061..1110194,1111250..1113227)
location: region:1086656-1113227:1
so has part: feature:1086656-1086795:1:exon
so has part: feature:1089620-1089718:1:exon
so has part: feature:1091569-1091790:1:exon
so has part: feature:1094867-1095016:1:exon
so has part: feature:1102356-1102450:1:exon
so has part: feature:1105034-1105166:1:exon
so has part: feature:1107650-1107857:1:exon
so has part: feature:1109415-1109580:1:exon
so has part: feature:1110061-1110194:1:exon
so has part: feature:1111250-1113227:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1086656-1086795:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1089620-1089718:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1091569-1091790:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1094867-1095016:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1102356-1102450:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105034-1105166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1107650-1107857:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1109415-1109580:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1110061-1110194:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1111250-1113227:1:exon

PALLD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PALLD
product: palladin, cytoskeletal associated protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_031442069.1
SIO_010081: PALLD
subclass of: SO_0000673
so part of: PALLD
location: join(1086663..1086795,1089620..1089718,1090450..1090500,1091569..1091790,1094867..1095016,1102356..1102450,1105034..1105166,1107650..1107857,1109415..1109580,1110061..1110194,1110349..1110393,1111250..1111372)
location: region:1086663-1111372:1
so has part: feature:1086663-1086795:1:exon
so has part: feature:1089620-1089718:1:exon
so has part: feature:1090450-1090500:1:exon
so has part: feature:1091569-1091790:1:exon
so has part: feature:1094867-1095016:1:exon
so has part: feature:1102356-1102450:1:exon
so has part: feature:1105034-1105166:1:exon
so has part: feature:1107650-1107857:1:exon
so has part: feature:1109415-1109580:1:exon
so has part: feature:1110061-1110194:1:exon
so has part: feature:1110349-1110393:1:exon
so has part: feature:1111250-1111372:1:exon

position:1086663:1
position: 1086663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1111372:1
position: 1111372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1086663-1086795:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1089620-1089718:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1090450-1090500:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1091569-1091790:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1094867-1095016:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1102356-1102450:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1105034-1105166:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1107650-1107857:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1109415-1109580:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1110061-1110194:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1110349-1110393:1:exon

position:1110349:1
position: 1110349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1110393:1
position: 1110393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1111250-1111372:1:exon

PALLD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PALLD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palladin isoform X2
translation: MARRLLGAGSATVLSAPEPEEEAASQDPGSPHASVGSPLDGQKEYKVSSCEQRLISEIEYRLERCPVEDPEEEAPWGDVATEDGVAPLFQVKLRHYKIFEGMPVTFTCKVTGSPKPKIYWFKDGKQISPRNQHYSLQSDPDGTCSLRAAAATLEDDGNYTVLAANPQGRVSCTGRLMVQAVNQRGRSPRPSSGHPHGRRPRSRSRDSADESEPIQERFFRPHFLQAPGDLTVQEGRLCRMDCKVSGLPTPDLTWQLDGRPVRPDSAHRMLVRENGVHSLVIEPVTARDAGIYTCVATNRAGQNAFSLELVVAAKEAYKAPVFLEKLQNTGVADGYPVRLECHVSGAPPPQIFWKKENESLTHSTDRVSMHQDPHGYVCLLIQGATKDDAGWYTVSAKNEAGIVSCTARLDVYTQWQQPAQSTKPKRVRPSASRYAALSDQGLDIRAAFQPEASPSHLALSPGLVESEDL
SIO_010081: PALLD
subclass of: SO_0000673
so part of: PALLD
location: join(1089641..1089718,1090450..1090500,1091569..1091790,1094867..1095016,1102356..1102450,1105034..1105166,1107650..1107857,1109415..1109580,1110061..1110194,1111250..1111422)
location: region:1089641-1111422:1
so has part: feature:1089641-1089718:1:exon
so has part: feature:1090450-1090500:1:exon
so has part: feature:1091569-1091790:1:exon
so has part: feature:1094867-1095016:1:exon
so has part: feature:1102356-1102450:1:exon
so has part: feature:1105034-1105166:1:exon
so has part: feature:1107650-1107857:1:exon
so has part: feature:1109415-1109580:1:exon
so has part: feature:1110061-1110194:1:exon
so has part: feature:1111250-1111422:1:exon

XP_031297930.1
type: Protein
SIO_000068: ncbiprotein

position:1089641:1
position: 1089641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1111422:1
position: 1111422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089641-1089718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1090450-1090500:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1091569-1091790:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1094867-1095016:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1102356-1102450:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105034-1105166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1107650-1107857:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1109415-1109580:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1110061-1110194:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1111250-1111422:1:exon

PALLD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PALLD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palladin isoform X3
translation: MARRLLGAGSATVLSAPEPEEEAASQEYKVSSCEQRLISEIEYRLERCPVEDPEEEAPWGDVATEDGVAPLFQVKLRHYKIFEGMPVTFTCKVTGSPKPKIYWFKDGKQISPRNQHYSLQSDPDGTCSLRAAAATLEDDGNYTVLAANPQGRVSCTGRLMVQAVNQRGRSPRPSSGHPHGRRPRSRSRDSADESEPIQERFFRPHFLQAPGDLTVQEGRLCRMDCKVSGLPTPDLTWQLDGRPVRPDSAHRMLVRENGVHSLVIEPVTARDAGIYTCVATNRAGQNAFSLELVVAAKEAYKAPVFLEKLQNTGVADGYPVRLECHVSGAPPPQIFWKKENESLTHSTDRVSMHQDPHGYVCLLIQGATKDDAGWYTVSAKNEAGIVSCTARLDVYTQWQQPAQSTKPKRVRPSASRYAALSDQGLDIRAAFQPEASPSHLALSPGLVESEDL
SIO_010081: PALLD
subclass of: SO_0000673
so part of: PALLD
location: join(1089641..1089718,1091569..1091790,1094867..1095016,1102356..1102450,1105034..1105166,1107650..1107857,1109415..1109580,1110061..1110194,1111250..1111422)
location: region:1089641-1111422:1
so has part: feature:1089641-1089718:1:exon
so has part: feature:1091569-1091790:1:exon
so has part: feature:1094867-1095016:1:exon
so has part: feature:1102356-1102450:1:exon
so has part: feature:1105034-1105166:1:exon
so has part: feature:1107650-1107857:1:exon
so has part: feature:1109415-1109580:1:exon
so has part: feature:1110061-1110194:1:exon
so has part: feature:1111250-1111422:1:exon

XP_031297931.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1089641-1089718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1091569-1091790:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1094867-1095016:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1102356-1102450:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1105034-1105166:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1107650-1107857:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1109415-1109580:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1110061-1110194:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1111250-1111422:1:exon

PALLD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PALLD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: palladin isoform X1
translation: MARRLLGAGSATVLSAPEPEEEAASQDPGSPHASVGSPLDGQKEYKVSSCEQRLISEIEYRLERCPVEDPEEEAPWGDVATEDGVAPLFQVKLRHYKIFEGMPVTFTCKVTGSPKPKIYWFKDGKQISPRNQHYSLQSDPDGTCSLRAAAATLEDDGNYTVLAANPQGRVSCTGRLMVQAVNQRGRSPRPSSGHPHGRRPRSRSRDSADESEPIQERFFRPHFLQAPGDLTVQEGRLCRMDCKVSGLPTPDLTWQLDGRPVRPDSAHRMLVRENGVHSLVIEPVTARDAGIYTCVATNRAGQNAFSLELVVAAKEAYKAPVFLEKLQNTGVADGYPVRLECHVSGAPPPQIFWKKENESLTHSTDRVSMHQDPHGYVCLLIQGATKDDAGWYTVSAKNEAGIVSCTARLDVYISQH
SIO_010081: PALLD
subclass of: SO_0000673
so part of: PALLD
location: join(1089641..1089718,1090450..1090500,1091569..1091790,1094867..1095016,1102356..1102450,1105034..1105166,1107650..1107857,1109415..1109580,1110061..1110194,1110349..1110362)
location: region:1089641-1110362:1
so has part: feature:1089641-1089718:1:exon
so has part: feature:1090450-1090500:1:exon
so has part: feature:1091569-1091790:1:exon
so has part: feature:1094867-1095016:1:exon
so has part: feature:1102356-1102450:1:exon
so has part: feature:1105034-1105166:1:exon
so has part: feature:1107650-1107857:1:exon
so has part: feature:1109415-1109580:1:exon
so has part: feature:1110061-1110194:1:exon
so has part: feature:1110349-1110362:1:exon

XP_031297929.1
type: Protein
SIO_000068: ncbiprotein

position:1110362:1
position: 1110362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1089641-1089718:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1090450-1090500:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1091569-1091790:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1094867-1095016:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1102356-1102450:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1105034-1105166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1107650-1107857:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1109415-1109580:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1110061-1110194:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1110349-1110362:1:exon

LOC116149872
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149872
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1096136..1129985)
location: region:1096136-1129985:-1
so has part: feature:1096136-1129985:-1:exon
subclass of: SO_0000011

116149872
type: Gene
SIO_000068: ncbigene

position:1096136:-1
position: 1096136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1129985:-1
position: 1129985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1096136-1129985:-1:exon

LOC116149872
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149872
product: uncharacterized LOC116149872, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XR_004133446.1
SIO_010081: LOC116149872
subclass of: SO_0000673
so part of: LOC116149872
location: complement(join(1096136..1096625,1098626..1098833,1129777..1129985))
location: region:1096136-1129985:-1
so has part: feature:1129777-1129985:-1:exon
so has part: feature:1098626-1098833:-1:exon
so has part: feature:1096136-1096625:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1129777-1129985:-1:exon

position:1129777:-1
position: 1129777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1098626-1098833:-1:exon

position:1098626:-1
position: 1098626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1098833:-1
position: 1098833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1096136-1096625:-1:exon

position:1096625:-1
position: 1096625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149872
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149872
product: uncharacterized LOC116149872, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_004133447.1
SIO_010081: LOC116149872
subclass of: SO_0000673
so part of: LOC116149872
location: complement(join(1096136..1096625,1098626..1098833,1101359..1101729))
location: region:1096136-1101729:-1
so has part: feature:1101359-1101729:-1:exon
so has part: feature:1098626-1098833:-1:exon
so has part: feature:1096136-1096625:-1:exon

position:1101729:-1
position: 1101729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1101359-1101729:-1:exon

position:1101359:-1
position: 1101359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1098626-1098833:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1096136-1096625:-1:exon

LOC116149872
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149872
product: uncharacterized LOC116149872, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133448.1
SIO_010081: LOC116149872
subclass of: SO_0000673
so part of: LOC116149872
location: complement(join(1096136..1096625,1098626..1098833,1099976..1100172,1101359..1101482))
location: region:1096136-1101482:-1
so has part: feature:1101359-1101482:-1:exon
so has part: feature:1099976-1100172:-1:exon
so has part: feature:1098626-1098833:-1:exon
so has part: feature:1096136-1096625:-1:exon

position:1101482:-1
position: 1101482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1101359-1101482:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1099976-1100172:-1:exon

position:1099976:-1
position: 1099976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1100172:-1
position: 1100172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1098626-1098833:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1096136-1096625:-1:exon

LOC116149872
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149872
product: uncharacterized LOC116149872, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XR_004133445.1
SIO_010081: LOC116149872
subclass of: SO_0000673
so part of: LOC116149872
location: complement(join(1096136..1096625,1098626..1099371))
location: region:1096136-1099371:-1
so has part: feature:1098626-1099371:-1:exon
so has part: feature:1096136-1096625:-1:exon

position:1099371:-1
position: 1099371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1098626-1099371:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1096136-1096625:-1:exon

LOC105101620
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101620
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1124802..1126136
location: region:1124802-1126136:1
so has part: feature:1124802-1126136:1:exon

105101620
type: Gene
SIO_000068: ncbigene

position:1124802:1
position: 1124802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1126136:1
position: 1126136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1124802-1126136:1:exon

LOC105101620
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105101620
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 76% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105101620
subclass of: SO_0000673
so part of: LOC105101620
location: 1124802..1126136
location: region:1124802-1126136:1
so has part: feature:1124802-1126136:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1124802-1126136:1:exon

CBR4
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CBR4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1132267..1149246)
location: region:1132267-1149246:-1
so has part: feature:1132267-1149246:-1:exon
subclass of: SO_0000010

105101613
type: Gene
SIO_000068: ncbigene

position:1132267:-1
position: 1132267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1149246:-1
position: 1149246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1132267-1149246:-1:exon

CBR4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CBR4
product: carbonyl reductase 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
transcript id: XM_010994815.2
SIO_010081: CBR4
subclass of: SO_0000673
so part of: CBR4
location: complement(join(1132267..1134182,1143053..1143187,1145402..1145538,1146812..1146932,1148935..1149246))
location: region:1132267-1149246:-1
so has part: feature:1148935-1149246:-1:exon
so has part: feature:1146812-1146932:-1:exon
so has part: feature:1145402-1145538:-1:exon
so has part: feature:1143053-1143187:-1:exon
so has part: feature:1132267-1134182:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1148935-1149246:-1:exon

position:1148935:-1
position: 1148935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1146812-1146932:-1:exon

position:1146812:-1
position: 1146812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1146932:-1
position: 1146932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1145402-1145538:-1:exon

position:1145402:-1
position: 1145402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1145538:-1
position: 1145538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1143053-1143187:-1:exon

position:1143053:-1
position: 1143053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1143187:-1
position: 1143187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1132267-1134182:-1:exon

position:1134182:-1
position: 1134182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CBR4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CBR4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonyl reductase family member 4
translation: MDKVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAAAGDLGGDHLAFSCDVSKEHDVQRTFEEIEKTLGHVNFLVNAAGINRDSLLVRTNTEDMLSQLHTNLLGSMLTCKAAVKTMIKQQRGSIVNVGSVIGLKGNAGQSVYSATKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKEEHLKKSIPLERFGEPEDVARAVVFLLESPYVTGHVLVVDGGLQLTM
SIO_010081: CBR4
subclass of: SO_0000673
so part of: CBR4
location: complement(join(1134004..1134182,1143053..1143187,1145402..1145538,1146812..1146932,1148935..1149076))
location: region:1134004-1149076:-1
so has part: feature:1148935-1149076:-1:exon
so has part: feature:1146812-1146932:-1:exon
so has part: feature:1145402-1145538:-1:exon
so has part: feature:1143053-1143187:-1:exon
so has part: feature:1134004-1134182:-1:exon

XP_010993117.2
type: Protein
SIO_000068: ncbiprotein

position:1134004:-1
position: 1134004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1149076:-1
position: 1149076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1148935-1149076:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1146812-1146932:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1145402-1145538:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1143053-1143187:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1134004-1134182:-1:exon

LOC105101614
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101614
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1162748..1182680)
location: region:1162748-1182680:-1
so has part: feature:1162748-1182680:-1:exon
subclass of: SO_0000011

105101614
type: Gene
SIO_000068: ncbigene

position:1162748:-1
position: 1162748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1182680:-1
position: 1182680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1162748-1182680:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133455.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165345,1171827..1172015,1182609..1182680))
location: region:1162748-1182680:-1
so has part: feature:1182609-1182680:-1:exon
so has part: feature:1171827-1172015:-1:exon
so has part: feature:1165272-1165345:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1182609-1182680:-1:exon

position:1182609:-1
position: 1182609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171827-1172015:-1:exon

position:1171827:-1
position: 1171827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1172015:-1
position: 1172015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1165272-1165345:-1:exon

position:1165272:-1
position: 1165272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1165345:-1
position: 1165345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1164865-1165046:-1:exon

position:1164865:-1
position: 1164865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1165046:-1
position: 1165046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1162748-1164137:-1:exon

position:1164137:-1
position: 1164137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004133451.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165705,1171827..1172015,1174228..1174631))
location: region:1162748-1174631:-1
so has part: feature:1174228-1174631:-1:exon
so has part: feature:1171827-1172015:-1:exon
so has part: feature:1165272-1165705:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

position:1174631:-1
position: 1174631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1174228-1174631:-1:exon

position:1174228:-1
position: 1174228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171827-1172015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1165272-1165705:-1:exon

position:1165705:-1
position: 1165705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1162748-1164137:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XR_004133450.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165345,1171827..1172015,1174228..1174620))
location: region:1162748-1174620:-1
so has part: feature:1174228-1174620:-1:exon
so has part: feature:1171827-1172015:-1:exon
so has part: feature:1165272-1165345:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

position:1174620:-1
position: 1174620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1174228-1174620:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1171827-1172015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1165272-1165345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1162748-1164137:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_004133452.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165345,1171827..1172015,1172670..1174080))
location: region:1162748-1174080:-1
so has part: feature:1172670-1174080:-1:exon
so has part: feature:1171827-1172015:-1:exon
so has part: feature:1165272-1165345:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

position:1174080:-1
position: 1174080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1172670-1174080:-1:exon

position:1172670:-1
position: 1172670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171827-1172015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1165272-1165345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1162748-1164137:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004133453.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165345,1171827..1172015,1172421..1172655))
location: region:1162748-1172655:-1
so has part: feature:1172421-1172655:-1:exon
so has part: feature:1171827-1172015:-1:exon
so has part: feature:1165272-1165345:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

position:1172655:-1
position: 1172655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1172421-1172655:-1:exon

position:1172421:-1
position: 1172421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171827-1172015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1165272-1165345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1162748-1164137:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133454.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165345,1171827..1172015,1172168..1172409))
location: region:1162748-1172409:-1
so has part: feature:1172168-1172409:-1:exon
so has part: feature:1171827-1172015:-1:exon
so has part: feature:1165272-1165345:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

position:1172409:-1
position: 1172409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1172168-1172409:-1:exon

position:1172168:-1
position: 1172168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1171827-1172015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1165272-1165345:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1162748-1164137:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133456.1
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1165705,1165810..1167517))
location: region:1162748-1167517:-1
so has part: feature:1165810-1167517:-1:exon
so has part: feature:1165272-1165705:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

position:1167517:-1
position: 1167517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1165810-1167517:-1:exon

position:1165810:-1
position: 1165810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1165272-1165705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1162748-1164137:-1:exon

LOC105101614
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101614
product: uncharacterized LOC105101614, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XR_838301.2
SIO_010081: LOC105101614
subclass of: SO_0000673
so part of: LOC105101614
location: complement(join(1162748..1164137,1164865..1165046,1165272..1167517))
location: region:1162748-1167517:-1
so has part: feature:1165272-1167517:-1:exon
so has part: feature:1164865-1165046:-1:exon
so has part: feature:1162748-1164137:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1165272-1167517:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1164865-1165046:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1162748-1164137:-1:exon

LOC116149874
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149874
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1176530..1179071
location: region:1176530-1179071:1
so has part: feature:1176530-1179071:1:exon
subclass of: SO_0000011

116149874
type: Gene
SIO_000068: ncbigene

position:1176530:1
position: 1176530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1179071:1
position: 1179071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1176530-1179071:1:exon

LOC116149874
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149874
product: uncharacterized LOC116149874
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004133457.1
SIO_010081: LOC116149874
subclass of: SO_0000673
so part of: LOC116149874
location: join(1176530..1176540,1177857..1177867,1178836..1179071)
location: region:1176530-1179071:1
so has part: feature:1176530-1176540:1:exon
so has part: feature:1177857-1177867:1:exon
so has part: feature:1178836-1179071:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1176530-1176540:1:exon

position:1176540:1
position: 1176540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1177857-1177867:1:exon

position:1177857:1
position: 1177857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1177867:1
position: 1177867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1178836-1179071:1:exon

position:1178836:1
position: 1178836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SH3RF1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SH3RF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1192449..1299563)
location: region:1192449-1299563:-1
so has part: feature:1192449-1299563:-1:exon
subclass of: SO_0000010

105101621
type: Gene
SIO_000068: ncbigene

position:1192449:-1
position: 1192449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1299563:-1
position: 1299563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1192449-1299563:-1:exon

SH3RF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SH3RF1
product: SH3 domain containing ring finger 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_031442073.1
SIO_010081: SH3RF1
subclass of: SO_0000673
so part of: SH3RF1
location: complement(join(1192449..1194469,1200290..1200576,1205410..1205651,1206696..1206952,1209753..1209923,1211162..1211298,1218522..1218632,1222066..1222353,1232714..1232809,1233594..1233869,1297422..1297904,1299446..1299563))
location: region:1192449-1299563:-1
so has part: feature:1299446-1299563:-1:exon
so has part: feature:1297422-1297904:-1:exon
so has part: feature:1233594-1233869:-1:exon
so has part: feature:1232714-1232809:-1:exon
so has part: feature:1222066-1222353:-1:exon
so has part: feature:1218522-1218632:-1:exon
so has part: feature:1211162-1211298:-1:exon
so has part: feature:1209753-1209923:-1:exon
so has part: feature:1206696-1206952:-1:exon
so has part: feature:1205410-1205651:-1:exon
so has part: feature:1200290-1200576:-1:exon
so has part: feature:1192449-1194469:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1299446-1299563:-1:exon

position:1299446:-1
position: 1299446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1297422-1297904:-1:exon

position:1297422:-1
position: 1297422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1297904:-1
position: 1297904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1233594-1233869:-1:exon

position:1233594:-1
position: 1233594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1233869:-1
position: 1233869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1232714-1232809:-1:exon

position:1232714:-1
position: 1232714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1232809:-1
position: 1232809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1222066-1222353:-1:exon

position:1222066:-1
position: 1222066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1222353:-1
position: 1222353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1218522-1218632:-1:exon

position:1218522:-1
position: 1218522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1218632:-1
position: 1218632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1211162-1211298:-1:exon

position:1211162:-1
position: 1211162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1211298:-1
position: 1211298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1209753-1209923:-1:exon

position:1209753:-1
position: 1209753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1209923:-1
position: 1209923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1206696-1206952:-1:exon

position:1206696:-1
position: 1206696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1206952:-1
position: 1206952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1205410-1205651:-1:exon

position:1205410:-1
position: 1205410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1205651:-1
position: 1205651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1200290-1200576:-1:exon

position:1200290:-1
position: 1200290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1200576:-1
position: 1200576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1192449-1194469:-1:exon

position:1194469:-1
position: 1194469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SH3RF1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SH3RF1
product: SH3 domain containing ring finger 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_031442072.1
SIO_010081: SH3RF1
subclass of: SO_0000673
so part of: SH3RF1
location: complement(join(1192449..1194469,1200290..1200576,1205410..1205651,1206696..1206952,1209753..1209923,1211162..1211298,1218522..1218632,1222066..1222353,1232714..1232809,1233594..1233869,1297422..1297909,1299446..1299563))
location: region:1192449-1299563:-1
so has part: feature:1299446-1299563:-1:exon
so has part: feature:1297422-1297909:-1:exon
so has part: feature:1233594-1233869:-1:exon
so has part: feature:1232714-1232809:-1:exon
so has part: feature:1222066-1222353:-1:exon
so has part: feature:1218522-1218632:-1:exon
so has part: feature:1211162-1211298:-1:exon
so has part: feature:1209753-1209923:-1:exon
so has part: feature:1206696-1206952:-1:exon
so has part: feature:1205410-1205651:-1:exon
so has part: feature:1200290-1200576:-1:exon
so has part: feature:1192449-1194469:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1299446-1299563:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1297422-1297909:-1:exon

position:1297909:-1
position: 1297909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1233594-1233869:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1232714-1232809:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1222066-1222353:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1218522-1218632:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1211162-1211298:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1209753-1209923:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1206696-1206952:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1205410-1205651:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1200290-1200576:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1192449-1194469:-1:exon

SH3RF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SH3RF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase SH3RF1
translation: MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGAGVEELPSNILLVRLLDGIKQRPCKAGPAAGGGTNCANTARAQSSSGASCGSKDLQSSQSGPQPRVQAWSPPARGTPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGVHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDVNWAEGMLADRIGIFPISYVEFNSAAKQLIEWDQPPGPGTGAGEGPSATAPKQPDAKKNTRKRHSFTSLTTAGKSTHAGQQRHSMDISPPVLISSSNPAAAARIGELAGLSCSAPSQVHISTTGLIVTPPPSSPVTASPAFTFPSEGPYPAALGTVNPPLPPPPLQAATPAGAAVGTGTRPAAGPTDQTAHLRPQTRPSVYVAVYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKTGVFPGNYVAPVTRTVTSASQGKVPVAAGQAGRGVTTGSPSTAGGPAQQLQGNGVAGGPGVVPTAVVSAAHLQTSPPAKVLMHMSGQMTVSQARSVVRTASAHGQERPMAAVTPIQAQSAVGLPHHPPAPMAMVGPGGLGWVGAALAPPNIPAASLETALPGLPTSPDGSSAVKPDKDGKKEKKGLLKLLSGASTKRRPRGSPPASPTLDSEPGAEPGSPCACPGPCDADGPALDPGLQRRAGSLDSAAPVAPPPRQPCSSLVPAAGEARPVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI
SIO_010081: SH3RF1
subclass of: SO_0000673
so part of: SH3RF1
location: complement(join(1194301..1194469,1200290..1200576,1205410..1205651,1206696..1206952,1209753..1209923,1211162..1211298,1218522..1218632,1222066..1222353,1232714..1232809,1233594..1233869,1297422..1297814))
location: region:1194301-1297814:-1
so has part: feature:1297422-1297814:-1:exon
so has part: feature:1233594-1233869:-1:exon
so has part: feature:1232714-1232809:-1:exon
so has part: feature:1222066-1222353:-1:exon
so has part: feature:1218522-1218632:-1:exon
so has part: feature:1211162-1211298:-1:exon
so has part: feature:1209753-1209923:-1:exon
so has part: feature:1206696-1206952:-1:exon
so has part: feature:1205410-1205651:-1:exon
so has part: feature:1200290-1200576:-1:exon
so has part: feature:1194301-1194469:-1:exon

XP_031297932.1
type: Protein
SIO_000068: ncbiprotein

position:1194301:-1
position: 1194301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1297814:-1
position: 1297814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1297422-1297814:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1233594-1233869:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1232714-1232809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1222066-1222353:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1218522-1218632:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1211162-1211298:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1209753-1209923:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1206696-1206952:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1205410-1205651:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1200290-1200576:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1194301-1194469:-1:exon

SH3RF1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SH3RF1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase SH3RF1
translation: MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVGSRNELRCPECRTLVGAGVEELPSNILLVRLLDGIKQRPCKAGPAAGGGTNCANTARAQSSSGASCGSKDLQSSQSGPQPRVQAWSPPARGTPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGVHGFFPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFAKDDVLTVIRRVDVNWAEGMLADRIGIFPISYVEFNSAAKQLIEWDQPPGPGTGAGEGPSATAPKQPDAKKNTRKRHSFTSLTTAGKSTHAGQQRHSMDISPPVLISSSNPAAAARIGELAGLSCSAPSQVHISTTGLIVTPPPSSPVTASPAFTFPSEGPYPAALGTVNPPLPPPPLQAATPAGAAVGTGTRPAAGPTDQTAHLRPQTRPSVYVAVYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKTGVFPGNYVAPVTRTVTSASQGKVPVAAGQAGRGVTTGSPSTAGGPAQQLQGNGVAGGPGVVPTAVVSAAHLQTSPPAKVLMHMSGQMTVSQARSVVRTASAHGQERPMAAVTPIQAQSAVGLPHHPPAPMAMVGPGGLGWVGAALAPPNIPAASLETALPGLPTSPDGSSAVKPDKDGKKEKKGLLKLLSGASTKRRPRGSPPASPTLDSEPGAEPGSPCACPGPCDADGPALDPGLQRRAGSLDSAAPVAPPPRQPCSSLVPAAGEARPVVCERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI
SIO_010081: SH3RF1
subclass of: SO_0000673
so part of: SH3RF1
location: complement(join(1194301..1194469,1200290..1200576,1205410..1205651,1206696..1206952,1209753..1209923,1211162..1211298,1218522..1218632,1222066..1222353,1232714..1232809,1233594..1233869,1297422..1297814))
location: region:1194301-1297814:-1
so has part: feature:1297422-1297814:-1:exon
so has part: feature:1233594-1233869:-1:exon
so has part: feature:1232714-1232809:-1:exon
so has part: feature:1222066-1222353:-1:exon
so has part: feature:1218522-1218632:-1:exon
so has part: feature:1211162-1211298:-1:exon
so has part: feature:1209753-1209923:-1:exon
so has part: feature:1206696-1206952:-1:exon
so has part: feature:1205410-1205651:-1:exon
so has part: feature:1200290-1200576:-1:exon
so has part: feature:1194301-1194469:-1:exon

XP_031297933.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1297422-1297814:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1233594-1233869:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1232714-1232809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1222066-1222353:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1218522-1218632:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1211162-1211298:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1209753-1209923:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1206696-1206952:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1205410-1205651:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1200290-1200576:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1194301-1194469:-1:exon

NEK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1339146..1428504)
location: region:1339146-1428504:-1
so has part: feature:1339146-1428504:-1:exon
subclass of: SO_0000010

105101615
type: Gene
SIO_000068: ncbigene

position:1339146:-1
position: 1339146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1428504:-1
position: 1428504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1339146-1428504:-1:exon

NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_031442075.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428348..1428504))
location: region:1339146-1428504:-1
so has part: feature:1428348-1428504:-1:exon
so has part: feature:1422783-1422927:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1339146-1340414:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1428348-1428504:-1:exon

position:1428348:-1
position: 1428348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1422783-1422927:-1:exon

position:1422783:-1
position: 1422783
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1422927:-1
position: 1422927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1422275-1422371:-1:exon

position:1422275:-1
position: 1422275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1422371:-1
position: 1422371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1419675-1419772:-1:exon

position:1419675:-1
position: 1419675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1419772:-1
position: 1419772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1416439-1416522:-1:exon

position:1416439:-1
position: 1416439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1416522:-1
position: 1416522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1414256-1414323:-1:exon

position:1414256:-1
position: 1414256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1414323:-1
position: 1414323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1414039-1414125:-1:exon

position:1414039:-1
position: 1414039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1414125:-1
position: 1414125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1413466-1413520:-1:exon

position:1413466:-1
position: 1413466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1413520:-1
position: 1413520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1412730-1412930:-1:exon

position:1412730:-1
position: 1412730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1412930:-1
position: 1412930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1408553-1408613:-1:exon

position:1408553:-1
position: 1408553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1408613:-1
position: 1408613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1405726-1405877:-1:exon

position:1405726:-1
position: 1405726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1405877:-1
position: 1405877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1401967-1402026:-1:exon

position:1401967:-1
position: 1401967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1402026:-1
position: 1402026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1401667-1401726:-1:exon

position:1401667:-1
position: 1401667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401726:-1
position: 1401726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1401526-1401573:-1:exon

position:1401526:-1
position: 1401526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401573:-1
position: 1401573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:1401318-1401392:-1:exon

position:1401318:-1
position: 1401318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1401392:-1
position: 1401392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:1400560-1400723:-1:exon

position:1400560:-1
position: 1400560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1400723:-1
position: 1400723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:1398477-1398579:-1:exon

position:1398477:-1
position: 1398477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1398579:-1
position: 1398579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:1388738-1388821:-1:exon

position:1388738:-1
position: 1388738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1388821:-1
position: 1388821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:1388238-1388321:-1:exon

position:1388238:-1
position: 1388238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1388321:-1
position: 1388321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:1387727-1387804:-1:exon

position:1387727:-1
position: 1387727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1387804:-1
position: 1387804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:1386987-1387082:-1:exon

position:1386987:-1
position: 1386987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1387082:-1
position: 1387082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:1377499-1377630:-1:exon

position:1377499:-1
position: 1377499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1377630:-1
position: 1377630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:1375575-1375640:-1:exon

position:1375575:-1
position: 1375575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1375640:-1
position: 1375640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:1375269-1375494:-1:exon

position:1375269:-1
position: 1375269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1375494:-1
position: 1375494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:1372422-1372574:-1:exon

position:1372422:-1
position: 1372422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1372574:-1
position: 1372574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:1362959-1363135:-1:exon

position:1362959:-1
position: 1362959
reference: sequence
type: ReverseStrandPosition
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_031442081.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_031442078.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428500))
location: region:1339146-1428500:-1
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_031442082.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
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location: region:1339146-1428500:-1
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urn:…
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_031442077.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428500))
location: region:1339146-1428500:-1
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031442080.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400633,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428500))
location: region:1339146-1428500:-1
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position:1400633:-1
position: 1400633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_031442079.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428500))
location: region:1339146-1428500:-1
so has part: feature:1428027-1428500:-1:exon
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NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_031442076.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355308..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428500))
location: region:1339146-1428500:-1
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urn:…
SIO_000300: 17
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1355308-1355381:-1:exon

position:1355308:-1
position: 1355308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1339146-1340414:-1:exon

NEK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_031442074.1
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1339146..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428500))
location: region:1339146-1428500:-1
so has part: feature:1428027-1428500:-1:exon
so has part: feature:1422783-1422927:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1339146-1340414:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1428027-1428500:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422783-1422927:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1339146-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X7
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQEVTRKRRSELTEKEKKHKDQLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401667..1401726,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297941.1
type: Protein
SIO_000068: ncbiprotein

position:1340401:-1
position: 1340401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1422899:-1
position: 1422899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X4
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQEVTRKRRSELTEKEKKHKDQISFLKAEQLRRQEKDRLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297938.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X8
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1398477..1398579,1400560..1400723,1401318..1401392,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297942.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X3
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297937.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X6
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQISFLKAEQLRRQEKDRLERINRAREQGWRDVLSAGGGGEVKMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400633,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400633:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1400560-1400633:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X5
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQISFLKAEQLRRQEKDRLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297939.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X2
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQISFLKAEQLRRQEKDRLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355308..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355308-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1355308-1355381:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X1
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQISFLKAEQLRRQEKDRLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297934.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase Nek1 isoform X1
translation: MEKYVRVQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSNKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFRRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIQLGDFGIARVLNSTVELARTCIGTPYYLSPEICENKPYNNKSDVWALGCVLYEMCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSHDLRSLLSQLFKRNPRDRPSVNSILEKGFIARRIEKFLSPQLIAEEFCLKTFSKFGAQPIPAKRPASGQSLASVVSAQKITKPAAKYGVPLTYKKYGDKKLHEKKPLQRHKQTHQTPVKKMNPGEERRKMFEEVTRKRRSELTEKEKKHKDQISFLKAEQLRRQEKDRLERINRAREQGWRDVLSAGGGGEVKAPFFGSGGAVAPASFSSRGQYEHYHAIFDQMQQQRAEDREVKWKGNIPGRRPLERPRGPPAAERARQVEEFLQRRREARQNKARAEGHLGILHNLAALCGGRPSSSRGGKPRSKEEEVYLARLRQIRLQNFNERQQIRAKLRGEKKEADSPEGQEGSEEAGVRRKKVEALKAQASARAAVLKEQLERKRREAYERERKAWEEQLVAKGMKNSDMSPPSGQRGAGGPPSKQQAGPVFSVTSALKGVGLDRSLTDTQETPEEVQKTSSAVSSKREILRRLNQNLKAQEEENEKQGPSEPELSAAHEDARGQERERAPADRRKWEAGGRLAVPAEGLTLDTSFSASGKHTVGEVIKLDPGGSPRKVWGRSPTDSVLKILGEAELQLQTGPLEDTVLGSEISPEREKCKPLMTGEEEVKCISPETDLSATADSSVETNGPNLSEASPQSSLKPEGNGDEPDDLETEVLQELRAADGGGGSPRTAVDVWVSEVEGTHAAELQDRITIQQSEASEDGAPGSMEQLGEPHAEPGADDSQHSECGIEKSVPPEPFFHRVVHPNHLSVASQVQSPPCSRGESFPLRPHSDSPPKSRKQNSLLIGLSTGLFDANNPKMLRTCSLPDLSKLFQTLMDVPTVGDVRQDSLEMDDVEEEHVKEGPSDSEDIAFAEADADLQELQASMERLLREPGDEDSEEERPALQSSGAGPGPGDEDDNPSSDSALHEAWHSDNSDGEVTSECEYESVFNHLEELRLHLEQEMGFEKFFEVYEKIKAVHEDEDENIEICSTVVQNLLGNEHEHLYAKILHLVMADGAYQEDNDE
SIO_010081: NEK1
subclass of: SO_0000673
so part of: NEK1
location: complement(join(1340401..1340414,1346651..1346783,1346950..1347080,1348013..1348203,1350350..1350501,1354100..1354347,1355293..1355381,1360460..1360580,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422899))
location: region:1340401-1422899:-1
so has part: feature:1422783-1422899:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1360460-1360580:-1:exon
so has part: feature:1355293-1355381:-1:exon
so has part: feature:1354100-1354347:-1:exon
so has part: feature:1350350-1350501:-1:exon
so has part: feature:1348013-1348203:-1:exon
so has part: feature:1346950-1347080:-1:exon
so has part: feature:1346651-1346783:-1:exon
so has part: feature:1340401-1340414:-1:exon

XP_031297935.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1422783-1422899:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1360460-1360580:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1355293-1355381:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1354100-1354347:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1350350-1350501:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1348013-1348203:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1346950-1347080:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1346651-1346783:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1340401-1340414:-1:exon

NEK1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: NEK1
product: NIMA related kinase 1, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004133458.1
SIO_010081: NEK1
so part of: NEK1
location: complement(join(1360466..1360580,1361564..1361684,1362959..1363135,1372422..1372574,1375269..1375494,1375575..1375640,1377499..1377630,1386987..1387082,1387727..1387804,1388238..1388321,1388738..1388821,1398477..1398579,1400560..1400723,1401318..1401392,1401526..1401573,1401667..1401726,1401967..1402026,1405726..1405877,1408553..1408613,1412730..1412930,1413466..1413520,1414039..1414125,1414256..1414323,1416439..1416522,1419675..1419772,1422275..1422371,1422783..1422927,1428027..1428502))
location: region:1360466-1428502:-1
so has part: feature:1428027-1428502:-1:exon
so has part: feature:1422783-1422927:-1:exon
so has part: feature:1422275-1422371:-1:exon
so has part: feature:1419675-1419772:-1:exon
so has part: feature:1416439-1416522:-1:exon
so has part: feature:1414256-1414323:-1:exon
so has part: feature:1414039-1414125:-1:exon
so has part: feature:1413466-1413520:-1:exon
so has part: feature:1412730-1412930:-1:exon
so has part: feature:1408553-1408613:-1:exon
so has part: feature:1405726-1405877:-1:exon
so has part: feature:1401967-1402026:-1:exon
so has part: feature:1401667-1401726:-1:exon
so has part: feature:1401526-1401573:-1:exon
so has part: feature:1401318-1401392:-1:exon
so has part: feature:1400560-1400723:-1:exon
so has part: feature:1398477-1398579:-1:exon
so has part: feature:1388738-1388821:-1:exon
so has part: feature:1388238-1388321:-1:exon
so has part: feature:1387727-1387804:-1:exon
so has part: feature:1386987-1387082:-1:exon
so has part: feature:1377499-1377630:-1:exon
so has part: feature:1375575-1375640:-1:exon
so has part: feature:1375269-1375494:-1:exon
so has part: feature:1372422-1372574:-1:exon
so has part: feature:1362959-1363135:-1:exon
so has part: feature:1361564-1361684:-1:exon
so has part: feature:1360466-1360580:-1:exon

position:1360466:-1
position: 1360466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1428502:-1
position: 1428502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1428027-1428502:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1422783-1422927:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1422275-1422371:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1419675-1419772:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1416439-1416522:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1414256-1414323:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1414039-1414125:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1413466-1413520:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1412730-1412930:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1408553-1408613:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1405726-1405877:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1401967-1402026:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1401667-1401726:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1401526-1401573:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1401318-1401392:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1400560-1400723:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1398477-1398579:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1388738-1388821:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1388238-1388321:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1387727-1387804:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1386987-1387082:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1377499-1377630:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1375575-1375640:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1375269-1375494:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1372422-1372574:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1362959-1363135:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1361564-1361684:-1:exon

position:1361564:-1
position: 1361564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1361684:-1
position: 1361684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:1360466-1360580:-1:exon

CLCN3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1433561..1501501
location: region:1433561-1501501:1
so has part: feature:1433561-1501501:1:exon
subclass of: SO_0000010

105101616
type: Gene
SIO_000068: ncbigene

position:1433561:1
position: 1433561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1501501:1
position: 1501501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1433561-1501501:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_031442084.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1433561..1433700,1442390..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1501501)
location: region:1433561-1501501:1
so has part: feature:1433561-1433700:1:exon
so has part: feature:1442390-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1501501:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1433561-1433700:1:exon

position:1433700:1
position: 1433700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1442390-1442565:1:exon

position:1442390:1
position: 1442390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1442565:1
position: 1442565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1472828-1472985:1:exon

position:1472828:1
position: 1472828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1472985:1
position: 1472985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1475742-1475841:1:exon

position:1475742:1
position: 1475742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1475841:1
position: 1475841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1477075-1477262:1:exon

position:1477075:1
position: 1477075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1477262:1
position: 1477262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1478260-1478382:1:exon

position:1478260:1
position: 1478260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1478382:1
position: 1478382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1479520-1479726:1:exon

position:1479520:1
position: 1479520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1479726:1
position: 1479726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1481737-1481817:1:exon

position:1481737:1
position: 1481737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1481817:1
position: 1481817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1482768-1483313:1:exon

position:1482768:1
position: 1482768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1483313:1
position: 1483313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1485232-1485418:1:exon

position:1485232:1
position: 1485232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1485418:1
position: 1485418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1487778-1488176:1:exon

position:1487778:1
position: 1487778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1488176:1
position: 1488176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1493213-1493429:1:exon

position:1493213:1
position: 1493213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1493429:1
position: 1493429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1497125-1497200:1:exon

position:1497125:1
position: 1497125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1497200:1
position: 1497200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1498761-1501501:1:exon

position:1498761:1
position: 1498761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_031442089.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1433720..1433934,1442390..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1493213..1493429,1497125..1497200,1498761..1501501)
location: region:1433720-1501501:1
so has part: feature:1433720-1433934:1:exon
so has part: feature:1442390-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1501501:1:exon

position:1433720:1
position: 1433720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1433720-1433934:1:exon

position:1433934:1
position: 1433934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1442390-1442565:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1501501:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_031442083.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1433726..1433934,1442390..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1501501)
location: region:1433726-1501501:1
so has part: feature:1433726-1433934:1:exon
so has part: feature:1442390-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1501501:1:exon

position:1433726:1
position: 1433726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1433726-1433934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1442390-1442565:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1498761-1501501:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031442087.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1433726..1433934,1442390..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1498761..1501501)
location: region:1433726-1501501:1
so has part: feature:1433726-1433934:1:exon
so has part: feature:1442390-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1498761-1501501:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1433726-1433934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1442390-1442565:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1501501:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_031442090.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1433726..1433934,1442390..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1498761..1498925)
location: region:1433726-1498925:1
so has part: feature:1433726-1433934:1:exon
so has part: feature:1442390-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1498761-1498925:1:exon

position:1498925:1
position: 1498925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1433726-1433934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1442390-1442565:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1498761-1498925:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031442085.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1434233..1434253,1442390..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1501501)
location: region:1434233-1501501:1
so has part: feature:1434233-1434253:1:exon
so has part: feature:1442390-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1501501:1:exon

position:1434233:1
position: 1434233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1434233-1434253:1:exon

position:1434253:1
position: 1434253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1442390-1442565:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1498761-1501501:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X1
translation: MESEQLFHRGSYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDSLLDGDAAAGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGTVLGIITKKNMVEHLEELARRTEPLAPPWYHNKKRYPPSYGPDGKPRSRFHHVQLSAAQEQGEGAEEEARLLDSTAL
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1442406..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1498919)
location: region:1442406-1498919:1
so has part: feature:1442406-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1498919:1:exon

XP_031297943.1
type: Protein
SIO_000068: ncbiprotein

position:1442406:1
position: 1442406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1498919:1
position: 1498919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1442406-1442565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1498919:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X1
translation: MESEQLFHRGSYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDSLLDGDAAAGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGTVLGIITKKNMVEHLEELARRTEPLAPPWYHNKKRYPPSYGPDGKPRSRFHHVQLSAAQEQGEGAEEEARLLDSTAL
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1442406..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1498919)
location: region:1442406-1498919:1
so has part: feature:1442406-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1498919:1:exon

XP_031297944.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1442406-1442565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1498919:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X1
translation: MESEQLFHRGSYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDSLLDGDAAAGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGTVLGIITKKNMVEHLEELARRTEPLAPPWYHNKKRYPPSYGPDGKPRSRFHHVQLSAAQEQGEGAEEEARLLDSTAL
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1442406..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1498919)
location: region:1442406-1498919:1
so has part: feature:1442406-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1498919:1:exon

XP_031297945.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1442406-1442565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1498919:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X5
translation: MESEQLFHRGSYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDSLLDGDAAAGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGTVLGIITKKNMVEHLEELARRTEPLAPPWYHNKKRYPPSYGPDGKPRSRFHHVQLSAAQEQGEGAEEEARLLDSTAL
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1442406..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1493213..1493429,1497125..1497200,1498761..1498919)
location: region:1442406-1498919:1
so has part: feature:1442406-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1498919:1:exon

XP_031297949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1442406-1442565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1498761-1498919:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X3
translation: MESEQLFHRGSYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDSLLDGDAAAGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGRLLGIITKKDILRHMAQTANQDPASIMFN
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1442406..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1498761..1498851)
location: region:1442406-1498851:1
so has part: feature:1442406-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1498761-1498851:1:exon

XP_031297947.1
type: Protein
SIO_000068: ncbiprotein

position:1498851:1
position: 1498851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1442406-1442565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1498761-1498851:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X6
translation: MESEQLFHRGSYRNSYNSITSASSDEELLDGAGVIMDFQTSEDDSLLDGDAAAGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIGASLVS
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1442406..1442565,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1498761..1498780)
location: region:1442406-1498780:1
so has part: feature:1442406-1442565:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1498761-1498780:1:exon

XP_031297950.1
type: Protein
SIO_000068: ncbiprotein

position:1498780:1
position: 1498780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1442406-1442565:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1498761-1498780:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_031442086.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1460973..1461157,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1501501)
location: region:1460973-1501501:1
so has part: feature:1460973-1461157:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1501501:1:exon

position:1460973:1
position: 1460973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1460973-1461157:1:exon

position:1461157:1
position: 1461157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1501501:1:exon

CLCN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CLCN3
product: chloride voltage-gated channel 3, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031442088.1
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1460975..1461157,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1498761..1501501)
location: region:1460975-1501501:1
so has part: feature:1460975-1461157:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1498761-1501501:1:exon

position:1460975:1
position: 1460975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1460975-1461157:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1498761-1501501:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X2
translation: MDAAADPYLPYDGGGDAIPLRELHKRGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGTVLGIITKKNMVEHLEELARRTEPLAPPWYHNKKRYPPSYGPDGKPRSRFHHVQLSAAQEQGEGAEEEARLLDSTAL
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1461079..1461157,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1497125..1497200,1498761..1498919)
location: region:1461079-1498919:1
so has part: feature:1461079-1461157:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1497125-1497200:1:exon
so has part: feature:1498761-1498919:1:exon

XP_031297946.1
type: Protein
SIO_000068: ncbiprotein

position:1461079:1
position: 1461079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1461079-1461157:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1497125-1497200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1498761-1498919:1:exon

CLCN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CLCN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: H(+)/Cl(-) exchange transporter 3 isoform X4
translation: MDAAADPYLPYDGGGDAIPLRELHKRGTHYTMTNGGSISSSTHLLDLLDEPIPGVGTYDDFHTIDWVREKCKDRERHRRINSKKKESAWEMTKSLCDAWSGWLVVTLTGLASGALAGLIDIAADWMTDLKEGVCLSALWYNHEQCCWGSNETTFEERDKCPQWTTWAELIIGQAEGPGSYIMNYIMYIFWALSFAFLAVSLVKVFAPYACGSGIPEIKTILSGFIIRGYLGKWTLMIKTITLVLAVASGLSLGKEGPLVHVACCCGNIFSYLFPKYSTNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVLRSINPFGNSRLVLFYVEYHTPWYLFELFPFILLGVFGGLWGAFFIRANIAWCRRRKSTRFGKYPVLEVIVVAAITAVIAFPNPYTRLNTSELIKELFTDCGPLESSSLCDYRNDMNASKIVDDIPDRPAGLGVYSAIWQLGLALVFKIIMTVFTFGIKVPSGLFIPSMAVGAIAGRIVGIAVEQLAYYHHDWFIFQEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVFELTGGLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTLAADVMRPRRSDPPLAVLTQDNMTVDDIENLINETSYNGFPVITSRESQRLVGFALRRDLTIAIESARKKQEGIVGSSRVCFAQHTPSLPAESPRPLKLRSILDMSPFTVTDHTPMEIVVDIFRKLGLRQCLVTHSGRLLGIITKKDILRHMAQTANQDPASIMFN
SIO_010081: CLCN3
subclass of: SO_0000673
so part of: CLCN3
location: join(1461079..1461157,1472828..1472985,1475742..1475841,1477075..1477262,1478260..1478382,1479520..1479726,1481737..1481817,1482768..1483313,1485232..1485418,1487778..1488176,1493213..1493429,1498761..1498851)
location: region:1461079-1498851:1
so has part: feature:1461079-1461157:1:exon
so has part: feature:1472828-1472985:1:exon
so has part: feature:1475742-1475841:1:exon
so has part: feature:1477075-1477262:1:exon
so has part: feature:1478260-1478382:1:exon
so has part: feature:1479520-1479726:1:exon
so has part: feature:1481737-1481817:1:exon
so has part: feature:1482768-1483313:1:exon
so has part: feature:1485232-1485418:1:exon
so has part: feature:1487778-1488176:1:exon
so has part: feature:1493213-1493429:1:exon
so has part: feature:1498761-1498851:1:exon

XP_031297948.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1461079-1461157:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1472828-1472985:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1475742-1475841:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1477075-1477262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1478260-1478382:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1479520-1479726:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1481737-1481817:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1482768-1483313:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1485232-1485418:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1487778-1488176:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1493213-1493429:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1498761-1498851:1:exon

LOC105101617
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101617
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1505568..>1523912)
location: region:1505568-1523912:-1
so has part: feature:1505568-1523912:-1:exon
subclass of: SO_0000010

105101617
type: Gene
SIO_000068: ncbigene

position:1505568:-1
position: 1505568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1523912:-1
position: 1523912
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1505568-1523912:-1:exon

LOC105101617
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101617
product: histone PARylation factor 1
inference: similar to RNA sequence, mRNA (same species):INSD:GAEB01033032.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 125 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031442091.1
SIO_010081: LOC105101617
subclass of: SO_0000673
so part of: LOC105101617
location: complement(join(1505568..1505798,1507083..1507255,1510725..1510812,1512767..1512917,1517476..1517574,1518608..1518794,1520661..1520820,1523860..>1523912))
location: region:1505568-1523912:-1
so has part: feature:1523860-1523912:-1:exon
so has part: feature:1520661-1520820:-1:exon
so has part: feature:1518608-1518794:-1:exon
so has part: feature:1517476-1517574:-1:exon
so has part: feature:1512767-1512917:-1:exon
so has part: feature:1510725-1510812:-1:exon
so has part: feature:1507083-1507255:-1:exon
so has part: feature:1505568-1505798:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1523860-1523912:-1:exon

position:1523860:-1
position: 1523860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1520661-1520820:-1:exon

position:1520661:-1
position: 1520661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1520820:-1
position: 1520820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1518608-1518794:-1:exon

position:1518608:-1
position: 1518608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1518794:-1
position: 1518794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1517476-1517574:-1:exon

position:1517476:-1
position: 1517476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1517574:-1
position: 1517574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1512767-1512917:-1:exon

position:1512767:-1
position: 1512767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1512917:-1
position: 1512917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1510725-1510812:-1:exon

position:1510725:-1
position: 1510725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1510812:-1
position: 1510812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1507083-1507255:-1:exon

position:1507083:-1
position: 1507083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1507255:-1
position: 1507255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1505568-1505798:-1:exon

position:1505798:-1
position: 1505798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101617
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101617
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: histone PARylation factor 1
translation: MVGGGGKRRPGGEGPQCEKAAAVKRSKSCAADVPSDLREEVERHYRLPLPEDFYHFWRFCEGLDPEKPADSLSASLGLRLVGPYDILAGKHKVRKPARLNCNLHWRFYYDPPELQTIIVGDGNTQFHMGYFRDSPDELPVFVGTNEAKKNCTIVQNGDNVFAAVKLFLMKKLKEVTDKKKTSLLKNIDEKLTEAARELGFSLEQRSMKMRQRDKRVVTKSFHGAGLVVPVDKNDVGYRELPETDASLRRICRTIAEAPSDDERLRAFAPVQEMVTFVQFANDECDYGMGLELGTDLFCHGSHYFHKVAGQLLPLAYNLLKRNLFAEIIEDHLAHRSKEDVDQLAA
SIO_010081: LOC105101617
subclass of: SO_0000673
so part of: LOC105101617
location: complement(join(1505667..1505798,1507083..1507255,1510725..1510812,1512767..1512917,1517476..1517574,1518608..1518794,1520661..1520820,1523860..1523907))
location: region:1505667-1523907:-1
so has part: feature:1523860-1523907:-1:exon
so has part: feature:1520661-1520820:-1:exon
so has part: feature:1518608-1518794:-1:exon
so has part: feature:1517476-1517574:-1:exon
so has part: feature:1512767-1512917:-1:exon
so has part: feature:1510725-1510812:-1:exon
so has part: feature:1507083-1507255:-1:exon
so has part: feature:1505667-1505798:-1:exon

XP_031297951.1
type: Protein
SIO_000068: ncbiprotein

position:1505667:-1
position: 1505667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1523907:-1
position: 1523907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1523860-1523907:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1520661-1520820:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1518608-1518794:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1517476-1517574:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1512767-1512917:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1510725-1510812:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1507083-1507255:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1505667-1505798:-1:exon

MFAP3L
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MFAP3L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1614684..1640155)
location: region:1614684-1640155:-1
so has part: feature:1614684-1640155:-1:exon
subclass of: SO_0000010

105101716
type: Gene
SIO_000068: ncbigene

position:1614684:-1
position: 1614684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1640155:-1
position: 1640155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1614684-1640155:-1:exon

MFAP3L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MFAP3L
product: microfibril associated protein 3 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_031442092.1
SIO_010081: MFAP3L
subclass of: SO_0000673
so part of: MFAP3L
location: complement(join(1614684..1616308,1625313..1625726,1639883..1640155))
location: region:1614684-1640155:-1
so has part: feature:1639883-1640155:-1:exon
so has part: feature:1625313-1625726:-1:exon
so has part: feature:1614684-1616308:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1639883-1640155:-1:exon

position:1639883:-1
position: 1639883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1625313-1625726:-1:exon

position:1625313:-1
position: 1625313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1625726:-1
position: 1625726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1614684-1616308:-1:exon

position:1616308:-1
position: 1616308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MFAP3L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MFAP3L
product: microfibril associated protein 3 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_010994935.2
SIO_010081: MFAP3L
subclass of: SO_0000673
so part of: MFAP3L
location: complement(join(1614684..1616308,1625313..1625726,1630957..1632731))
location: region:1614684-1632731:-1
so has part: feature:1630957-1632731:-1:exon
so has part: feature:1625313-1625726:-1:exon
so has part: feature:1614684-1616308:-1:exon

position:1632731:-1
position: 1632731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1630957-1632731:-1:exon

position:1630957:-1
position: 1630957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1625313-1625726:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1614684-1616308:-1:exon

MFAP3L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MFAP3L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: microfibrillar-associated protein 3-like
translation: MGGSRSLLPVCFLPSVPFLILASTLATAKSLANSTLSGTDVVAGSAPVVTARTDHVIVREGNSALINCSVSGVPEPQFRWYNSIGKLLEEEEREGGKWQMHSGLLNITQVSFSDRGKYTCVASNAHGSANNSVTLRVVFTSGDMGVYYMVVCLVAFAVVLVLNVTRLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTIMEDILEVVGLEEQGQNFVRHAPEGQEAADGDEVYTIPDSPKRSDSPTGDSDASSLPEHPQQIAIKVSVHPPSRREHADAHEGAPFPAGEEEDTEPSAERSPESAEPSTDVTSAALTSEEPTPVEVSDRVLPPPLLEAAEPAGAQDRDACVVYESHV
SIO_010081: MFAP3L
subclass of: SO_0000673
so part of: MFAP3L
location: complement(join(1615380..1616308,1625313..1625598))
location: region:1615380-1625598:-1
so has part: feature:1625313-1625598:-1:exon
so has part: feature:1615380-1616308:-1:exon

XP_010993237.2
type: Protein
SIO_000068: ncbiprotein

position:1615380:-1
position: 1615380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1625598:-1
position: 1625598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1625313-1625598:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1615380-1616308:-1:exon

MFAP3L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MFAP3L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: microfibrillar-associated protein 3-like
translation: MGGSRSLLPVCFLPSVPFLILASTLATAKSLANSTLSGTDVVAGSAPVVTARTDHVIVREGNSALINCSVSGVPEPQFRWYNSIGKLLEEEEREGGKWQMHSGLLNITQVSFSDRGKYTCVASNAHGSANNSVTLRVVFTSGDMGVYYMVVCLVAFAVVLVLNVTRLCMMSSHLKKTEKAINEFFRTEGAEKLQKAFEIAKRIPIITSAKTLELAKVTQFKTMEFARYIEELARSVPLPPLIMNCRTIMEDILEVVGLEEQGQNFVRHAPEGQEAADGDEVYTIPDSPKRSDSPTGDSDASSLPEHPQQIAIKVSVHPPSRREHADAHEGAPFPAGEEEDTEPSAERSPESAEPSTDVTSAALTSEEPTPVEVSDRVLPPPLLEAAEPAGAQDRDACVVYESHV
SIO_010081: MFAP3L
subclass of: SO_0000673
so part of: MFAP3L
location: complement(join(1615380..1616308,1625313..1625598))
location: region:1615380-1625598:-1
so has part: feature:1625313-1625598:-1:exon
so has part: feature:1615380-1616308:-1:exon

XP_031297952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1625313-1625598:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1615380-1616308:-1:exon

AADAT
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: AADAT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1653069..1678069)
location: region:1653069-1678069:-1
so has part: feature:1653069-1678069:-1:exon
subclass of: SO_0000010

105101723
type: Gene
SIO_000068: ncbigene

position:1653069:-1
position: 1653069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1678069:-1
position: 1678069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1653069-1678069:-1:exon

AADAT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: AADAT
product: aminoadipate aminotransferase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_010994946.2
SIO_010081: AADAT
subclass of: SO_0000673
so part of: AADAT
location: complement(join(1653069..1653600,1654534..1654635,1658860..1658966,1660240..1660304,1660573..1660634,1661857..1661953,1662405..1662487,1663735..1663800,1665568..1665777,1669485..1669559,1672957..1673089,1674067..1674235,1674769..1674879,1677746..1678069))
location: region:1653069-1678069:-1
so has part: feature:1677746-1678069:-1:exon
so has part: feature:1674769-1674879:-1:exon
so has part: feature:1674067-1674235:-1:exon
so has part: feature:1672957-1673089:-1:exon
so has part: feature:1669485-1669559:-1:exon
so has part: feature:1665568-1665777:-1:exon
so has part: feature:1663735-1663800:-1:exon
so has part: feature:1662405-1662487:-1:exon
so has part: feature:1661857-1661953:-1:exon
so has part: feature:1660573-1660634:-1:exon
so has part: feature:1660240-1660304:-1:exon
so has part: feature:1658860-1658966:-1:exon
so has part: feature:1654534-1654635:-1:exon
so has part: feature:1653069-1653600:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1677746-1678069:-1:exon

position:1677746:-1
position: 1677746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1674769-1674879:-1:exon

position:1674769:-1
position: 1674769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1674879:-1
position: 1674879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1674067-1674235:-1:exon

position:1674067:-1
position: 1674067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1674235:-1
position: 1674235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1672957-1673089:-1:exon

position:1672957:-1
position: 1672957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1673089:-1
position: 1673089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1669485-1669559:-1:exon

position:1669485:-1
position: 1669485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1669559:-1
position: 1669559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1665568-1665777:-1:exon

position:1665568:-1
position: 1665568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1665777:-1
position: 1665777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1663735-1663800:-1:exon

position:1663735:-1
position: 1663735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1663800:-1
position: 1663800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1662405-1662487:-1:exon

position:1662405:-1
position: 1662405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1662487:-1
position: 1662487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1661857-1661953:-1:exon

position:1661857:-1
position: 1661857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1661953:-1
position: 1661953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1660573-1660634:-1:exon

position:1660573:-1
position: 1660573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1660634:-1
position: 1660634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1660240-1660304:-1:exon

position:1660240:-1
position: 1660240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1660304:-1
position: 1660304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:1658860-1658966:-1:exon

position:1658860:-1
position: 1658860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1658966:-1
position: 1658966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:1654534-1654635:-1:exon

position:1654534:-1
position: 1654534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1654635:-1
position: 1654635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:1653069-1653600:-1:exon

position:1653600:-1
position: 1653600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

AADAT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: AADAT
product: aminoadipate aminotransferase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_010994956.2
SIO_010081: AADAT
subclass of: SO_0000673
so part of: AADAT
location: complement(join(1653069..1653600,1654534..1654635,1658860..1658966,1660240..1660304,1660573..1660634,1661857..1661953,1662405..1662487,1663735..1663800,1665568..1665777,1669485..1669559,1672957..1673089,1674067..1674235,1674769..1674879,1675042..1675191))
location: region:1653069-1675191:-1
so has part: feature:1675042-1675191:-1:exon
so has part: feature:1674769-1674879:-1:exon
so has part: feature:1674067-1674235:-1:exon
so has part: feature:1672957-1673089:-1:exon
so has part: feature:1669485-1669559:-1:exon
so has part: feature:1665568-1665777:-1:exon
so has part: feature:1663735-1663800:-1:exon
so has part: feature:1662405-1662487:-1:exon
so has part: feature:1661857-1661953:-1:exon
so has part: feature:1660573-1660634:-1:exon
so has part: feature:1660240-1660304:-1:exon
so has part: feature:1658860-1658966:-1:exon
so has part: feature:1654534-1654635:-1:exon
so has part: feature:1653069-1653600:-1:exon

position:1675191:-1
position: 1675191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1675042-1675191:-1:exon

position:1675042:-1
position: 1675042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1674769-1674879:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1674067-1674235:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1672957-1673089:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1669485-1669559:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1665568-1665777:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1663735-1663800:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1662405-1662487:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1661857-1661953:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1660573-1660634:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1660240-1660304:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1658860-1658966:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1654534-1654635:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1653069-1653600:-1:exon

AADAT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: AADAT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kynurenine/alpha-aminoadipate aminotransferase, mitochondrial
translation: MNYARFLTATSAARKACAIRVVADIMEKAPKSLIPLATGAPNPDTFPFKTAVITIEDGQTIQLNEQMMKTALQYSQSAGIPELLSWLKQLQVHLHNPPTIHYPSSEGQMDICVMSGSQEGLCKVFEMIINPGDNILVNEPIYAGTIHALQPLGCNIINVASDEYGIIPNSLREILSKWKPEDSKNPEKNTPKFLYTIPNGNNPTGHSLTSNRKKEIYELARKYDFLIVEDDPYYFLQFNKPWEPTFLSMDVDGRVIRADSFSKVLSSGLRIGFITGPKFLIERLVLHTQVSTLHPSTFSQVLVSQLLHQWGQEGFLAHVERVTDFYRKQKDALLAAADKWLRGLAEWHVPTAGLFLWIKIKGIDDARKLTEKKALKKEVLLVPGCGFYVDDSAPSPYFRASFSLASPEQMDVAFQRLAQLIKESL
SIO_010081: AADAT
subclass of: SO_0000673
so part of: AADAT
location: complement(join(1653559..1653600,1654534..1654635,1658860..1658966,1660240..1660304,1660573..1660634,1661857..1661953,1662405..1662487,1663735..1663800,1665568..1665777,1669485..1669559,1672957..1673089,1674067..1674235,1674769..1674835))
location: region:1653559-1674835:-1
so has part: feature:1674769-1674835:-1:exon
so has part: feature:1674067-1674235:-1:exon
so has part: feature:1672957-1673089:-1:exon
so has part: feature:1669485-1669559:-1:exon
so has part: feature:1665568-1665777:-1:exon
so has part: feature:1663735-1663800:-1:exon
so has part: feature:1662405-1662487:-1:exon
so has part: feature:1661857-1661953:-1:exon
so has part: feature:1660573-1660634:-1:exon
so has part: feature:1660240-1660304:-1:exon
so has part: feature:1658860-1658966:-1:exon
so has part: feature:1654534-1654635:-1:exon
so has part: feature:1653559-1653600:-1:exon

XP_010993248.1
type: Protein
SIO_000068: ncbiprotein

position:1653559:-1
position: 1653559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1674835:-1
position: 1674835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1674769-1674835:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1674067-1674235:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1672957-1673089:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1669485-1669559:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1665568-1665777:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1663735-1663800:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1662405-1662487:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1661857-1661953:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1660573-1660634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1660240-1660304:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1658860-1658966:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1654534-1654635:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1653559-1653600:-1:exon

AADAT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: AADAT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kynurenine/alpha-aminoadipate aminotransferase, mitochondrial
translation: MNYARFLTATSAARKACAIRVVADIMEKAPKSLIPLATGAPNPDTFPFKTAVITIEDGQTIQLNEQMMKTALQYSQSAGIPELLSWLKQLQVHLHNPPTIHYPSSEGQMDICVMSGSQEGLCKVFEMIINPGDNILVNEPIYAGTIHALQPLGCNIINVASDEYGIIPNSLREILSKWKPEDSKNPEKNTPKFLYTIPNGNNPTGHSLTSNRKKEIYELARKYDFLIVEDDPYYFLQFNKPWEPTFLSMDVDGRVIRADSFSKVLSSGLRIGFITGPKFLIERLVLHTQVSTLHPSTFSQVLVSQLLHQWGQEGFLAHVERVTDFYRKQKDALLAAADKWLRGLAEWHVPTAGLFLWIKIKGIDDARKLTEKKALKKEVLLVPGCGFYVDDSAPSPYFRASFSLASPEQMDVAFQRLAQLIKESL
SIO_010081: AADAT
subclass of: SO_0000673
so part of: AADAT
location: complement(join(1653559..1653600,1654534..1654635,1658860..1658966,1660240..1660304,1660573..1660634,1661857..1661953,1662405..1662487,1663735..1663800,1665568..1665777,1669485..1669559,1672957..1673089,1674067..1674235,1674769..1674835))
location: region:1653559-1674835:-1
so has part: feature:1674769-1674835:-1:exon
so has part: feature:1674067-1674235:-1:exon
so has part: feature:1672957-1673089:-1:exon
so has part: feature:1669485-1669559:-1:exon
so has part: feature:1665568-1665777:-1:exon
so has part: feature:1663735-1663800:-1:exon
so has part: feature:1662405-1662487:-1:exon
so has part: feature:1661857-1661953:-1:exon
so has part: feature:1660573-1660634:-1:exon
so has part: feature:1660240-1660304:-1:exon
so has part: feature:1658860-1658966:-1:exon
so has part: feature:1654534-1654635:-1:exon
so has part: feature:1653559-1653600:-1:exon

XP_010993258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1674769-1674835:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1674067-1674235:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1672957-1673089:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1669485-1669559:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1665568-1665777:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1663735-1663800:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1662405-1662487:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1661857-1661953:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1660573-1660634:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1660240-1660304:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1658860-1658966:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1654534-1654635:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1653559-1653600:-1:exon

LOC116149876
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149876
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1861917..1895264
location: region:1861917-1895264:1
so has part: feature:1861917-1895264:1:exon
subclass of: SO_0000011

116149876
type: Gene
SIO_000068: ncbigene

position:1861917:1
position: 1861917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1895264:1
position: 1895264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1861917-1895264:1:exon

LOC116149876
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149876
product: uncharacterized LOC116149876
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133460.1
SIO_010081: LOC116149876
subclass of: SO_0000673
so part of: LOC116149876
location: join(1861917..1862313,1885783..1885860,1892870..1895264)
location: region:1861917-1895264:1
so has part: feature:1861917-1862313:1:exon
so has part: feature:1885783-1885860:1:exon
so has part: feature:1892870-1895264:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1861917-1862313:1:exon

position:1862313:1
position: 1862313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1885783-1885860:1:exon

position:1885783:1
position: 1885783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1885860:1
position: 1885860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1892870-1895264:1:exon

position:1892870:1
position: 1892870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149875
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149875
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1870094..1872527
location: region:1870094-1872527:1
so has part: feature:1870094-1872527:1:exon
subclass of: SO_0000011

116149875
type: Gene
SIO_000068: ncbigene

position:1870094:1
position: 1870094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1872527:1
position: 1872527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1870094-1872527:1:exon

LOC116149875
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149875
product: uncharacterized LOC116149875
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133459.1
SIO_010081: LOC116149875
subclass of: SO_0000673
so part of: LOC116149875
location: join(1870094..1871267,1871939..1872527)
location: region:1870094-1872527:1
so has part: feature:1870094-1871267:1:exon
so has part: feature:1871939-1872527:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1870094-1871267:1:exon

position:1871267:1
position: 1871267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1871939-1872527:1:exon

position:1871939:1
position: 1871939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149858
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149858
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1939811..1943215)
location: region:1939811-1943215:-1
so has part: feature:1939811-1943215:-1:exon
subclass of: SO_0000011

116149858
type: Gene
SIO_000068: ncbigene

position:1939811:-1
position: 1939811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1943215:-1
position: 1943215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1939811-1943215:-1:exon

LOC116149858
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149858
product: uncharacterized LOC116149858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133433.1
SIO_010081: LOC116149858
subclass of: SO_0000673
so part of: LOC116149858
location: complement(join(1939811..1941561,1942721..1942908,1943068..1943215))
location: region:1939811-1943215:-1
so has part: feature:1943068-1943215:-1:exon
so has part: feature:1942721-1942908:-1:exon
so has part: feature:1939811-1941561:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1943068-1943215:-1:exon

position:1943068:-1
position: 1943068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1942721-1942908:-1:exon

position:1942721:-1
position: 1942721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1942908:-1
position: 1942908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1939811-1941561:-1:exon

position:1941561:-1
position: 1941561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149879
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149879
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2577916..2579920)
location: region:2577916-2579920:-1
so has part: feature:2577916-2579920:-1:exon
subclass of: SO_0000010

116149879
type: Gene
SIO_000068: ncbigene

position:2577916:-1
position: 2577916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2579920:-1
position: 2579920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2577916-2579920:-1:exon

LOC116149879
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149879
product: translation initiation factor IF-2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_031442095.1
SIO_010081: LOC116149879
subclass of: SO_0000673
so part of: LOC116149879
location: complement(join(2577916..2578840,2579380..2579920))
location: region:2577916-2579920:-1
so has part: feature:2579380-2579920:-1:exon
so has part: feature:2577916-2578840:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2579380-2579920:-1:exon

position:2579380:-1
position: 2579380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2577916-2578840:-1:exon

position:2578840:-1
position: 2578840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149879
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149879
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC116149879
translation: MRGDEAVRPRAGARAGGAGRPPLPAPTSANPDAGTPRRATPPRDRASSSPPALSRSPRGAALRPPSPLGRRAPHAGGQGSGCSRAFRGLIHDAGGRGGDRVPPPGQVRPGGGHGPEARPGGGSARAAASGATPWSWGRLTWVCTRPGRPRLMKTWMCV
SIO_010081: LOC116149879
subclass of: SO_0000673
so part of: LOC116149879
location: complement(join(2578808..2578840,2579380..2579823))
location: region:2578808-2579823:-1
so has part: feature:2579380-2579823:-1:exon
so has part: feature:2578808-2578840:-1:exon

XP_031297955.1
type: Protein
SIO_000068: ncbiprotein

position:2578808:-1
position: 2578808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2579823:-1
position: 2579823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2579380-2579823:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2578808-2578840:-1:exon

GALNTL6
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GALNTL6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2580699..3434394
location: region:2580699-3434394:1
so has part: feature:2580699-3434394:1:exon
subclass of: SO_0000010

105101736
type: Gene
SIO_000068: ncbigene

position:2580699:1
position: 2580699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3434394:1
position: 3434394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2580699-3434394:1:exon

GALNTL6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GALNTL6
product: polypeptide N-acetylgalactosaminyltransferase like 6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010994967.2
SIO_010081: GALNTL6
subclass of: SO_0000673
so part of: GALNTL6
location: join(2580699..2581039,2867435..2867543,2906156..2906294,2927505..2927671,3288555..3288740,3292502..3292685,3353826..3353943,3378537..3378644,3391057..3391278,3410066..3410182,3418120..3418269,3433899..3434394)
location: region:2580699-3434394:1
so has part: feature:2580699-2581039:1:exon
so has part: feature:2867435-2867543:1:exon
so has part: feature:2906156-2906294:1:exon
so has part: feature:2927505-2927671:1:exon
so has part: feature:3288555-3288740:1:exon
so has part: feature:3292502-3292685:1:exon
so has part: feature:3353826-3353943:1:exon
so has part: feature:3378537-3378644:1:exon
so has part: feature:3391057-3391278:1:exon
so has part: feature:3410066-3410182:1:exon
so has part: feature:3418120-3418269:1:exon
so has part: feature:3433899-3434394:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2580699-2581039:1:exon

position:2581039:1
position: 2581039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2867435-2867543:1:exon

position:2867435:1
position: 2867435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2867543:1
position: 2867543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2906156-2906294:1:exon

position:2906156:1
position: 2906156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2906294:1
position: 2906294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2927505-2927671:1:exon

position:2927505:1
position: 2927505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2927671:1
position: 2927671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3288555-3288740:1:exon

position:3288555:1
position: 3288555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3288740:1
position: 3288740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3292502-3292685:1:exon

position:3292502:1
position: 3292502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3292685:1
position: 3292685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3353826-3353943:1:exon

position:3353826:1
position: 3353826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3353943:1
position: 3353943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3378537-3378644:1:exon

position:3378537:1
position: 3378537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3378644:1
position: 3378644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3391057-3391278:1:exon

position:3391057:1
position: 3391057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3391278:1
position: 3391278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3410066-3410182:1:exon

position:3410066:1
position: 3410066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3410182:1
position: 3410182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3418120-3418269:1:exon

position:3418120:1
position: 3418120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3418269:1
position: 3418269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3433899-3434394:1:exon

position:3433899:1
position: 3433899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GALNTL6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GALNTL6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X1
translation: MRLFCRCPSPSESCRLVLSTQQKFLASPQFLVLRRGEERTLALNSRRGQGTTSCNFPSLLPFAMKRKQKRFLQMTLLFMVALIFLPNVGLWSLYKEKHLVKSAEPGEQQTFPLGLGDGQFYAWTDGLRRKDWHDYESIQREAMRSGKGEHGKPYPLTEEDHDDSAYRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIPFHNEGWTSLLRTIHSIINRTPESLVAEVILVDDFSDREHLKDKLEEYMARFSKVRIVRTKKREGLIRTRLLGASLARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAGDAMRGAFDWEMYYKRIPIPPELQRADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARNLKRVAETWMDEFAEFVYQRRPEYRHLSTGDLSAQKELRRQLQCKDFKWFMAAVAWDVPKYYPPVEPRPRPWGGLRNVAANLCVDSKHGATGTELRLDVCVKDGSERTWSHEQLFTFGWREDIRPGEPLHTRKFCFDAISHSSAVTLYDCHGMKGNQLWGHRKDRTLFHPVSNSCMDCNPAEKKIFMARCDPLSETQQWIFEHINMTVLEKFNYHASS
SIO_010081: GALNTL6
subclass of: SO_0000673
so part of: GALNTL6
location: join(2580713..2581039,2867435..2867543,2906156..2906294,2927505..2927671,3288555..3288740,3292502..3292685,3353826..3353943,3378537..3378644,3391057..3391278,3410066..3410182,3418120..3418269,3433899..3434066)
location: region:2580713-3434066:1
so has part: feature:2580713-2581039:1:exon
so has part: feature:2867435-2867543:1:exon
so has part: feature:2906156-2906294:1:exon
so has part: feature:2927505-2927671:1:exon
so has part: feature:3288555-3288740:1:exon
so has part: feature:3292502-3292685:1:exon
so has part: feature:3353826-3353943:1:exon
so has part: feature:3378537-3378644:1:exon
so has part: feature:3391057-3391278:1:exon
so has part: feature:3410066-3410182:1:exon
so has part: feature:3418120-3418269:1:exon
so has part: feature:3433899-3434066:1:exon

XP_010993269.2
type: Protein
SIO_000068: ncbiprotein

position:2580713:1
position: 2580713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3434066:1
position: 3434066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2580713-2581039:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2867435-2867543:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2906156-2906294:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2927505-2927671:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3288555-3288740:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3292502-3292685:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3353826-3353943:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3378537-3378644:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3391057-3391278:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3410066-3410182:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3418120-3418269:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3433899-3434066:1:exon

TRNAA-UGC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAA-UGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 2780310..2780381
location: region:2780310-2780381:1
so has part: feature:2780310-2780381:1:exon
subclass of: SO_0000663

116149931
type: Gene
SIO_000068: ncbigene

position:2780310:1
position: 2780310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2780381:1
position: 2780381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2780310-2780381:1:exon

TRNAA-UGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAA-UGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:2780342..2780344,aa:Ala,seq:tgc)
SIO_010081: TRNAA-UGC
subclass of: SO_0000673
so part of: TRNAA-UGC
location: 2780310..2780381
location: region:2780310-2780381:1
so has part: feature:2780310-2780381:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2780310-2780381:1:exon

GALNTL6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GALNTL6
product: polypeptide N-acetylgalactosaminyltransferase like 6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442096.1
SIO_010081: GALNTL6
subclass of: SO_0000673
so part of: GALNTL6
location: join(2872888..2873059,2906156..2906294,2927505..2927671,3288555..3288740,3292502..3292685,3353826..3353943,3378537..3378644,3391057..3391278,3410066..3410182,3418120..3418269,3433899..3434394)
location: region:2872888-3434394:1
so has part: feature:2872888-2873059:1:exon
so has part: feature:2906156-2906294:1:exon
so has part: feature:2927505-2927671:1:exon
so has part: feature:3288555-3288740:1:exon
so has part: feature:3292502-3292685:1:exon
so has part: feature:3353826-3353943:1:exon
so has part: feature:3378537-3378644:1:exon
so has part: feature:3391057-3391278:1:exon
so has part: feature:3410066-3410182:1:exon
so has part: feature:3418120-3418269:1:exon
so has part: feature:3433899-3434394:1:exon

position:2872888:1
position: 2872888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2872888-2873059:1:exon

position:2873059:1
position: 2873059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2906156-2906294:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2927505-2927671:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3288555-3288740:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3292502-3292685:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3353826-3353943:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3378537-3378644:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3391057-3391278:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3410066-3410182:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3418120-3418269:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3433899-3434394:1:exon

GALNTL6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GALNTL6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: polypeptide N-acetylgalactosaminyltransferase-like 6 isoform X2
translation: MRSGKGEHGKPYPLTEEDHDDSAYRENGFNIFVSNNIALERSLPDIRHANCKHKMYLERLPNTSIIIPFHNEGWTSLLRTIHSIINRTPESLVAEVILVDDFSDREHLKDKLEEYMARFSKVRIVRTKKREGLIRTRLLGASLARGEVLTFLDSHCEVNVNWLPPLLNQIALNHKTIVCPMIDVIDHNHFGYEAQAGDAMRGAFDWEMYYKRIPIPPELQRADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGEMFDVPCSRVGHIYRKYVPYKVPSGTSLARNLKRVAETWMDEFAEFVYQRRPEYRHLSTGDLSAQKELRRQLQCKDFKWFMAAVAWDVPKYYPPVEPRPRPWGGLRNVAANLCVDSKHGATGTELRLDVCVKDGSERTWSHEQLFTFGWREDIRPGEPLHTRKFCFDAISHSSAVTLYDCHGMKGNQLWGHRKDRTLFHPVSNSCMDCNPAEKKIFMARCDPLSETQQWIFEHINMTVLEKFNYHASS
SIO_010081: GALNTL6
subclass of: SO_0000673
so part of: GALNTL6
location: join(2873050..2873059,2906156..2906294,2927505..2927671,3288555..3288740,3292502..3292685,3353826..3353943,3378537..3378644,3391057..3391278,3410066..3410182,3418120..3418269,3433899..3434066)
location: region:2873050-3434066:1
so has part: feature:2873050-2873059:1:exon
so has part: feature:2906156-2906294:1:exon
so has part: feature:2927505-2927671:1:exon
so has part: feature:3288555-3288740:1:exon
so has part: feature:3292502-3292685:1:exon
so has part: feature:3353826-3353943:1:exon
so has part: feature:3378537-3378644:1:exon
so has part: feature:3391057-3391278:1:exon
so has part: feature:3410066-3410182:1:exon
so has part: feature:3418120-3418269:1:exon
so has part: feature:3433899-3434066:1:exon

XP_031297956.1
type: Protein
SIO_000068: ncbiprotein

position:2873050:1
position: 2873050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2873050-2873059:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2906156-2906294:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2927505-2927671:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3288555-3288740:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3292502-3292685:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3353826-3353943:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3378537-3378644:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3391057-3391278:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3410066-3410182:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3418120-3418269:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3433899-3434066:1:exon

LOC116149880
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149880
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2939588..2942271
location: region:2939588-2942271:1
so has part: feature:2939588-2942271:1:exon
subclass of: SO_0000011

116149880
type: Gene
SIO_000068: ncbigene

position:2939588:1
position: 2939588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2942271:1
position: 2942271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2939588-2942271:1:exon

LOC116149880
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149880
product: uncharacterized LOC116149880
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133461.1
SIO_010081: LOC116149880
subclass of: SO_0000673
so part of: LOC116149880
location: join(2939588..2940015,2941198..2941349,2941551..2942271)
location: region:2939588-2942271:1
so has part: feature:2939588-2940015:1:exon
so has part: feature:2941198-2941349:1:exon
so has part: feature:2941551-2942271:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2939588-2940015:1:exon

position:2940015:1
position: 2940015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2941198-2941349:1:exon

position:2941198:1
position: 2941198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2941349:1
position: 2941349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2941551-2942271:1:exon

position:2941551:1
position: 2941551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GALNT7
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GALNT7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3513459..3607547
location: region:3513459-3607547:1
so has part: feature:3513459-3607547:1:exon
subclass of: SO_0000010

105101743
type: Gene
SIO_000068: ncbigene

position:3513459:1
position: 3513459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3607547:1
position: 3607547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3513459-3607547:1:exon

GALNT7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GALNT7
product: polypeptide N-acetylgalactosaminyltransferase 7
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_010994981.2
SIO_010081: GALNT7
subclass of: SO_0000673
so part of: GALNT7
location: join(3513459..3513669,3561111..3561574,3584937..3585103,3588917..3589047,3589304..3589383,3591584..3591766,3594586..3594703,3596102..3596224,3599030..3599248,3601185..3601283,3601997..3602125,3605091..3607547)
location: region:3513459-3607547:1
so has part: feature:3513459-3513669:1:exon
so has part: feature:3561111-3561574:1:exon
so has part: feature:3584937-3585103:1:exon
so has part: feature:3588917-3589047:1:exon
so has part: feature:3589304-3589383:1:exon
so has part: feature:3591584-3591766:1:exon
so has part: feature:3594586-3594703:1:exon
so has part: feature:3596102-3596224:1:exon
so has part: feature:3599030-3599248:1:exon
so has part: feature:3601185-3601283:1:exon
so has part: feature:3601997-3602125:1:exon
so has part: feature:3605091-3607547:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3513459-3513669:1:exon

position:3513669:1
position: 3513669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3561111-3561574:1:exon

position:3561111:1
position: 3561111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3561574:1
position: 3561574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3584937-3585103:1:exon

position:3584937:1
position: 3584937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3585103:1
position: 3585103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3588917-3589047:1:exon

position:3588917:1
position: 3588917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3589047:1
position: 3589047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3589304-3589383:1:exon

position:3589304:1
position: 3589304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3589383:1
position: 3589383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3591584-3591766:1:exon

position:3591584:1
position: 3591584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3591766:1
position: 3591766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3594586-3594703:1:exon

position:3594586:1
position: 3594586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3594703:1
position: 3594703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3596102-3596224:1:exon

position:3596102:1
position: 3596102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3596224:1
position: 3596224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3599030-3599248:1:exon

position:3599030:1
position: 3599030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3599248:1
position: 3599248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3601185-3601283:1:exon

position:3601185:1
position: 3601185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3601283:1
position: 3601283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3601997-3602125:1:exon

position:3601997:1
position: 3601997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3602125:1
position: 3602125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3605091-3607547:1:exon

position:3605091:1
position: 3605091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GALNT7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GALNT7
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: N-acetylgalactosaminyltransferase 7
translation: MRLKIGLLLRSLLVVGSFLGLVVLWSSLSPRPDEPXPLSRMREDRAVNNPLPDRGGNGLALGEDRFKPVVPWPHVEGVEVDLESIRRKNKAGPEQERRAGGGDNQRDVMQRQYLTFKPQTLTYRDPVLRPGVLGNFEPKEPEPHGVVGGPGEKAQPLVLGPEFKHAVQASIKEFGFNMVASDMISLDRSVNDLRQEECKYWHYDENLLTASVVIVFHNEGWSTLMRTVHSVIKRTPRKYLAEIVLIDDFSNKEHLKGKLDEYIKLWNGLVKVFRNERREGLIQARSIGAQKAKLGQVLIYLDAHCEVAANWYAPLVAPISKDRTICTVPIIDVINGNTYEIVPQGGGDEDGYARGVWDWSMLWKRVPLTPREKRMRKTKTEPYRSPAMAGGLFAIERDFFFELGLYDPGLQIWGGENFEISYKIWQCGGKLLFVPCSRVGHIYRLEGWQGNPPPIYVGSSPTLKNYVRVVEVWWDEYKDYFYASRPESKALAYGDISELKKFREDHNCKSFKWFMEEIAYDVTSHYPLPPRNVEWGEIRGFETAYCIDSMGRTNGGLVELGPCHRMGGNQLFRINEANQLMQYDQCLTKGPDGSKIMITHCNLNEFKEWQYFKNLHRLTHVPSGMCLDRSEILHQVFISNCDSSKTTQKWEINNIHSV
SIO_010081: GALNT7
subclass of: SO_0000673
so part of: GALNT7
location: join(3513545..3513669,3561111..3561574,3584937..3585103,3588917..3589047,3589304..3589383,3591584..3591766,3594586..3594703,3596102..3596224,3599030..3599248,3601185..3601283,3601997..3602125,3605091..3605228)
location: region:3513545-3605228:1
so has part: feature:3513545-3513669:1:exon
so has part: feature:3561111-3561574:1:exon
so has part: feature:3584937-3585103:1:exon
so has part: feature:3588917-3589047:1:exon
so has part: feature:3589304-3589383:1:exon
so has part: feature:3591584-3591766:1:exon
so has part: feature:3594586-3594703:1:exon
so has part: feature:3596102-3596224:1:exon
so has part: feature:3599030-3599248:1:exon
so has part: feature:3601185-3601283:1:exon
so has part: feature:3601997-3602125:1:exon
so has part: feature:3605091-3605228:1:exon

XP_010993283.2
type: Protein
SIO_000068: ncbiprotein

position:3513545:1
position: 3513545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3605228:1
position: 3605228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3513545-3513669:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3561111-3561574:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3584937-3585103:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3588917-3589047:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3589304-3589383:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3591584-3591766:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3594586-3594703:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3596102-3596224:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3599030-3599248:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3601185-3601283:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3601997-3602125:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3605091-3605228:1:exon

LOC116149881
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149881
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3570373..3584792)
location: region:3570373-3584792:-1
so has part: feature:3570373-3584792:-1:exon
subclass of: SO_0000011

116149881
type: Gene
SIO_000068: ncbigene

position:3570373:-1
position: 3570373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3584792:-1
position: 3584792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3570373-3584792:-1:exon

LOC116149881
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149881
product: uncharacterized LOC116149881
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133462.1
SIO_010081: LOC116149881
subclass of: SO_0000673
so part of: LOC116149881
location: complement(join(3570373..3575776,3576520..3576894,3578353..3578417,3578915..3580283,3584689..3584792))
location: region:3570373-3584792:-1
so has part: feature:3584689-3584792:-1:exon
so has part: feature:3578915-3580283:-1:exon
so has part: feature:3578353-3578417:-1:exon
so has part: feature:3576520-3576894:-1:exon
so has part: feature:3570373-3575776:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3584689-3584792:-1:exon

position:3584689:-1
position: 3584689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3578915-3580283:-1:exon

position:3578915:-1
position: 3578915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3580283:-1
position: 3580283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3578353-3578417:-1:exon

position:3578353:-1
position: 3578353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3578417:-1
position: 3578417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3576520-3576894:-1:exon

position:3576520:-1
position: 3576520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3576894:-1
position: 3576894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3570373-3575776:-1:exon

position:3575776:-1
position: 3575776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HMGB2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: HMGB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3614310..3616756)
location: region:3614310-3616756:-1
so has part: feature:3614310-3616756:-1:exon
subclass of: SO_0000010

105101750
type: Gene
SIO_000068: ncbigene

position:3614310:-1
position: 3614310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3616756:-1
position: 3616756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3614310-3616756:-1:exon

HMGB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HMGB2
product: high mobility group box 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031442097.1
SIO_010081: HMGB2
subclass of: SO_0000673
so part of: HMGB2
location: complement(join(3614310..3614859,3615447..3615621,3615704..3615849,3616067..3616264,3616604..3616756))
location: region:3614310-3616756:-1
so has part: feature:3616604-3616756:-1:exon
so has part: feature:3616067-3616264:-1:exon
so has part: feature:3615704-3615849:-1:exon
so has part: feature:3615447-3615621:-1:exon
so has part: feature:3614310-3614859:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3616604-3616756:-1:exon

position:3616604:-1
position: 3616604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3616067-3616264:-1:exon

position:3616067:-1
position: 3616067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3616264:-1
position: 3616264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3615704-3615849:-1:exon

position:3615704:-1
position: 3615704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3615849:-1
position: 3615849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3615447-3615621:-1:exon

position:3615447:-1
position: 3615447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3615621:-1
position: 3615621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3614310-3614859:-1:exon

position:3614859:-1
position: 3614859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HMGB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HMGB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: high mobility group protein B2
translation: MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEEEEDEEEEDEDEE
SIO_010081: HMGB2
subclass of: SO_0000673
so part of: HMGB2
location: complement(join(3614698..3614859,3615447..3615621,3615704..3615849,3616067..3616216))
location: region:3614698-3616216:-1
so has part: feature:3616067-3616216:-1:exon
so has part: feature:3615704-3615849:-1:exon
so has part: feature:3615447-3615621:-1:exon
so has part: feature:3614698-3614859:-1:exon

XP_031297957.1
type: Protein
SIO_000068: ncbiprotein

position:3614698:-1
position: 3614698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3616216:-1
position: 3616216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3616067-3616216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3615704-3615849:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3615447-3615621:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3614698-3614859:-1:exon

SAP30
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SAP30
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3639224..3644685
location: region:3639224-3644685:1
so has part: feature:3639224-3644685:1:exon
subclass of: SO_0000010

105101766
type: Gene
SIO_000068: ncbigene

position:3639224:1
position: 3639224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3644685:1
position: 3644685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3639224-3644685:1:exon

SAP30
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SAP30
product: Sin3A associated protein 30
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_031442098.1
SIO_010081: SAP30
subclass of: SO_0000673
so part of: SAP30
location: join(3639224..3639887,3641466..3641591,3642173..3642271,3644348..3644685)
location: region:3639224-3644685:1
so has part: feature:3639224-3639887:1:exon
so has part: feature:3641466-3641591:1:exon
so has part: feature:3642173-3642271:1:exon
so has part: feature:3644348-3644685:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3639224-3639887:1:exon

position:3639887:1
position: 3639887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3641466-3641591:1:exon

position:3641466:1
position: 3641466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3641591:1
position: 3641591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3642173-3642271:1:exon

position:3642173:1
position: 3642173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3642271:1
position: 3642271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3644348-3644685:1:exon

position:3644348:1
position: 3644348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SAP30
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SAP30
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP30
translation: MNGFTPEDMSRGGERGRRXGAVLAAAAAAAAPGRERSRGGAGADVPVAGPVGARGPTGAAGPGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH
SIO_010081: SAP30
subclass of: SO_0000673
so part of: SAP30
location: join(3639569..3639887,3641466..3641591,3642173..3642271,3644348..3644470)
location: region:3639569-3644470:1
so has part: feature:3639569-3639887:1:exon
so has part: feature:3641466-3641591:1:exon
so has part: feature:3642173-3642271:1:exon
so has part: feature:3644348-3644470:1:exon

XP_031297958.1
type: Protein
SIO_000068: ncbiprotein

position:3639569:1
position: 3639569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3644470:1
position: 3644470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3639569-3639887:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3641466-3641591:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3642173-3642271:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3644348-3644470:1:exon

SCRG1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SCRG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3653367..3667550)
location: region:3653367-3667550:-1
so has part: feature:3653367-3667550:-1:exon
subclass of: SO_0000011

105101761
type: Gene
SIO_000068: ncbigene

position:3653367:-1
position: 3653367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3667550:-1
position: 3667550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3653367-3667550:-1:exon

SCRG1
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: SCRG1
product: stimulator of chondrogenesis 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 Proteins, and 70% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_838307.2
SIO_010081: SCRG1
subclass of: SO_0000673
so part of: SCRG1
location: complement(join(3653367..3653875,3656418..3656673,3667429..3667550))
location: region:3653367-3667550:-1
so has part: feature:3667429-3667550:-1:exon
so has part: feature:3656418-3656673:-1:exon
so has part: feature:3653367-3653875:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3667429-3667550:-1:exon

position:3667429:-1
position: 3667429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3656418-3656673:-1:exon

position:3656418:-1
position: 3656418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3656673:-1
position: 3656673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3653367-3653875:-1:exon

position:3653875:-1
position: 3653875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149882
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149882
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3653884..3679242
location: region:3653884-3679242:1
so has part: feature:3653884-3679242:1:exon
subclass of: SO_0000011

116149882
type: Gene
SIO_000068: ncbigene

position:3653884:1
position: 3653884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3679242:1
position: 3679242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3653884-3679242:1:exon

LOC116149882
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149882
product: uncharacterized LOC116149882, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133463.1
SIO_010081: LOC116149882
subclass of: SO_0000673
so part of: LOC116149882
location: join(3653884..3654055,3656427..3656518,3670393..3670489,3672379..3672495,3673597..3673672,3677274..3679242)
location: region:3653884-3679242:1
so has part: feature:3653884-3654055:1:exon
so has part: feature:3656427-3656518:1:exon
so has part: feature:3670393-3670489:1:exon
so has part: feature:3672379-3672495:1:exon
so has part: feature:3673597-3673672:1:exon
so has part: feature:3677274-3679242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3653884-3654055:1:exon

position:3654055:1
position: 3654055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3656427-3656518:1:exon

position:3656427:1
position: 3656427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3656518:1
position: 3656518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3670393-3670489:1:exon

position:3670393:1
position: 3670393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3670489:1
position: 3670489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3672379-3672495:1:exon

position:3672379:1
position: 3672379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3672495:1
position: 3672495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3673597-3673672:1:exon

position:3673597:1
position: 3673597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3673672:1
position: 3673672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3677274-3679242:1:exon

position:3677274:1
position: 3677274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149882
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149882
product: uncharacterized LOC116149882, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133464.1
SIO_010081: LOC116149882
subclass of: SO_0000673
so part of: LOC116149882
location: join(3653884..3654055,3656427..3656518,3670393..3670489,3672379..3672495,3673597..3673672,3677274..3677359,3678455..3679242)
location: region:3653884-3679242:1
so has part: feature:3653884-3654055:1:exon
so has part: feature:3656427-3656518:1:exon
so has part: feature:3670393-3670489:1:exon
so has part: feature:3672379-3672495:1:exon
so has part: feature:3673597-3673672:1:exon
so has part: feature:3677274-3677359:1:exon
so has part: feature:3678455-3679242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3653884-3654055:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3656427-3656518:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3670393-3670489:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3672379-3672495:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3673597-3673672:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677274-3677359:1:exon

position:3677359:1
position: 3677359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3678455-3679242:1:exon

position:3678455:1
position: 3678455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149882
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149882
product: uncharacterized LOC116149882, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133465.1
SIO_010081: LOC116149882
subclass of: SO_0000673
so part of: LOC116149882
location: join(3653884..3654055,3656430..3656518,3670393..3670489,3672379..3672495,3673597..3673672,3677274..3679242)
location: region:3653884-3679242:1
so has part: feature:3653884-3654055:1:exon
so has part: feature:3656430-3656518:1:exon
so has part: feature:3670393-3670489:1:exon
so has part: feature:3672379-3672495:1:exon
so has part: feature:3673597-3673672:1:exon
so has part: feature:3677274-3679242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3653884-3654055:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3656430-3656518:1:exon

position:3656430:1
position: 3656430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3670393-3670489:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3672379-3672495:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3673597-3673672:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3677274-3679242:1:exon

LOC116149882
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149882
product: uncharacterized LOC116149882, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133466.1
SIO_010081: LOC116149882
subclass of: SO_0000673
so part of: LOC116149882
location: join(3653884..3654055,3670393..3670489,3672379..3672495,3673597..3673672,3677274..3679242)
location: region:3653884-3679242:1
so has part: feature:3653884-3654055:1:exon
so has part: feature:3670393-3670489:1:exon
so has part: feature:3672379-3672495:1:exon
so has part: feature:3673597-3673672:1:exon
so has part: feature:3677274-3679242:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3653884-3654055:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3670393-3670489:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3672379-3672495:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3673597-3673672:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3677274-3679242:1:exon

LOC105101770
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101770
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3691020..3763449)
location: region:3691020-3763449:-1
so has part: feature:3691020-3763449:-1:exon
subclass of: SO_0000011

105101770
type: Gene
SIO_000068: ncbigene

position:3691020:-1
position: 3691020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3763449:-1
position: 3763449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3691020-3763449:-1:exon

LOC105101770
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101770
product: uncharacterized LOC105101770, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133481.1
SIO_010081: LOC105101770
subclass of: SO_0000673
so part of: LOC105101770
location: complement(join(3691020..3691602,3693272..3693417,3693517..3693621,3700527..3700658,3706358..3706460,3706799..3707939,3744373..3744506,3763124..3763231,3763311..3763449))
location: region:3691020-3763449:-1
so has part: feature:3763311-3763449:-1:exon
so has part: feature:3763124-3763231:-1:exon
so has part: feature:3744373-3744506:-1:exon
so has part: feature:3706799-3707939:-1:exon
so has part: feature:3706358-3706460:-1:exon
so has part: feature:3700527-3700658:-1:exon
so has part: feature:3693517-3693621:-1:exon
so has part: feature:3693272-3693417:-1:exon
so has part: feature:3691020-3691602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3763311-3763449:-1:exon

position:3763311:-1
position: 3763311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3763124-3763231:-1:exon

position:3763124:-1
position: 3763124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3763231:-1
position: 3763231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3744373-3744506:-1:exon

position:3744373:-1
position: 3744373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3744506:-1
position: 3744506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3706799-3707939:-1:exon

position:3706799:-1
position: 3706799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3707939:-1
position: 3707939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3706358-3706460:-1:exon

position:3706358:-1
position: 3706358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3706460:-1
position: 3706460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3700527-3700658:-1:exon

position:3700527:-1
position: 3700527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3700658:-1
position: 3700658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3693517-3693621:-1:exon

position:3693517:-1
position: 3693517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3693621:-1
position: 3693621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3693272-3693417:-1:exon

position:3693272:-1
position: 3693272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3693417:-1
position: 3693417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3691020-3691602:-1:exon

position:3691602:-1
position: 3691602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101770
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101770
product: uncharacterized LOC105101770, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133479.1
SIO_010081: LOC105101770
subclass of: SO_0000673
so part of: LOC105101770
location: complement(join(3691020..3691602,3693272..3693417,3693517..3693621,3700527..3700658,3706358..3707939,3744373..3744506,3763124..3763231,3763311..3763449))
location: region:3691020-3763449:-1
so has part: feature:3763311-3763449:-1:exon
so has part: feature:3763124-3763231:-1:exon
so has part: feature:3744373-3744506:-1:exon
so has part: feature:3706358-3707939:-1:exon
so has part: feature:3700527-3700658:-1:exon
so has part: feature:3693517-3693621:-1:exon
so has part: feature:3693272-3693417:-1:exon
so has part: feature:3691020-3691602:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3763311-3763449:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3763124-3763231:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3744373-3744506:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3706358-3707939:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3700527-3700658:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3693517-3693621:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3693272-3693417:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3691020-3691602:-1:exon

LOC105101770
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101770
product: uncharacterized LOC105101770, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133480.1
SIO_010081: LOC105101770
subclass of: SO_0000673
so part of: LOC105101770
location: complement(join(3692609..3693417,3693517..3693621,3700527..3700658,3706358..3707939,3744373..3744506,3763124..3763231,3763311..3763449))
location: region:3692609-3763449:-1
so has part: feature:3763311-3763449:-1:exon
so has part: feature:3763124-3763231:-1:exon
so has part: feature:3744373-3744506:-1:exon
so has part: feature:3706358-3707939:-1:exon
so has part: feature:3700527-3700658:-1:exon
so has part: feature:3693517-3693621:-1:exon
so has part: feature:3692609-3693417:-1:exon

position:3692609:-1
position: 3692609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3763311-3763449:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3763124-3763231:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3744373-3744506:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3706358-3707939:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3700527-3700658:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3693517-3693621:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3692609-3693417:-1:exon

LOC105101810
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101810
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3762582..3961130
location: region:3762582-3961130:1
so has part: feature:3762582-3961130:1:exon
subclass of: SO_0000011

105101810
type: Gene
SIO_000068: ncbigene

position:3762582:1
position: 3762582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3961130:1
position: 3961130
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3961130:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133474.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3852488..3852592,3894104..3894195,3934920..3935036,3935353..3935615,3942575..3942748,3957387..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3852488-3852592:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3934920-3935036:1:exon
so has part: feature:3935353-3935615:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

position:3767914:1
position: 3767914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

position:3772376:1
position: 3772376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3772864:1
position: 3772864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

position:3791396:1
position: 3791396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3791506:1
position: 3791506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3852488-3852592:1:exon

position:3852488:1
position: 3852488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3852592:1
position: 3852592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3894104-3894195:1:exon

position:3894104:1
position: 3894104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3894195:1
position: 3894195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3934920-3935036:1:exon

position:3934920:1
position: 3934920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3935036:1
position: 3935036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3935353-3935615:1:exon

position:3935353:1
position: 3935353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3935615:1
position: 3935615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3942575-3942748:1:exon

position:3942575:1
position: 3942575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3942748:1
position: 3942748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3957387-3961130:1:exon

position:3957387:1
position: 3957387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133469.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3934920..3935036,3935353..3935615,3942575..3942748,3957387..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3934920-3935036:1:exon
so has part: feature:3935353-3935615:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3934920-3935036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3935353-3935615:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3942575-3942748:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3957387-3961130:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133472.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3934920..3935036,3935353..3935615,3942575..3942748,3957387..3957469,3957856..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3934920-3935036:1:exon
so has part: feature:3935353-3935615:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3957469:1:exon
so has part: feature:3957856-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3934920-3935036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3935353-3935615:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3942575-3942748:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3957387-3957469:1:exon

position:3957469:1
position: 3957469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3957856-3961130:1:exon

position:3957856:1
position: 3957856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133473.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3934920..3935036,3935353..3935615,3942575..3942748,3957387..3957441,3957856..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3934920-3935036:1:exon
so has part: feature:3935353-3935615:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3957441:1:exon
so has part: feature:3957856-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3934920-3935036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3935353-3935615:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3942575-3942748:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3957387-3957441:1:exon

position:3957441:1
position: 3957441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3957856-3961130:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_838322.2
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3934920..3935036,3935353..3935615,3942575..3942748,3957387..3957441,3960886..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3934920-3935036:1:exon
so has part: feature:3935353-3935615:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3957441:1:exon
so has part: feature:3960886-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3934920-3935036:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3935353-3935615:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3942575-3942748:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3957387-3957441:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3960886-3961130:1:exon

position:3960886:1
position: 3960886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133470.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3942575..3942748,3957387..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3942575-3942748:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3957387-3961130:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133476.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3942575..3942748,3957387..3961130)
location: region:3762582-3961130:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3942575-3942748:1:exon
so has part: feature:3957387-3961130:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3942575-3942748:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3957387-3961130:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133475.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3852488..3852592,3894104..3894195,3927934..3931836)
location: region:3762582-3931836:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3852488-3852592:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3927934-3931836:1:exon

position:3931836:1
position: 3931836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3852488-3852592:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3927934-3931836:1:exon

position:3927934:1
position: 3927934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133478.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3852488..3852592,3927934..3931836)
location: region:3762582-3931836:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3852488-3852592:1:exon
so has part: feature:3927934-3931836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3852488-3852592:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3927934-3931836:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133467.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3927934..3931836)
location: region:3762582-3931836:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3927934-3931836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3927934-3931836:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133477.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3772376..3772864,3791396..3791506,3927934..3931836)
location: region:3762582-3931836:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3927934-3931836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3927934-3931836:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133471.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3767914,3791396..3791506,3894104..3894195,3927934..3931836)
location: region:3762582-3931836:1
so has part: feature:3762582-3767914:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3927934-3931836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3767914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3927934-3931836:1:exon

LOC105101810
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105101810
product: uncharacterized LOC105101810, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133468.1
SIO_010081: LOC105101810
subclass of: SO_0000673
so part of: LOC105101810
location: join(3762582..3766174,3766920..3767914,3772376..3772864,3791396..3791506,3894104..3894195,3927934..3931836)
location: region:3762582-3931836:1
so has part: feature:3762582-3766174:1:exon
so has part: feature:3766920-3767914:1:exon
so has part: feature:3772376-3772864:1:exon
so has part: feature:3791396-3791506:1:exon
so has part: feature:3894104-3894195:1:exon
so has part: feature:3927934-3931836:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3762582-3766174:1:exon

position:3766174:1
position: 3766174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3766920-3767914:1:exon

position:3766920:1
position: 3766920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3772376-3772864:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3791396-3791506:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3894104-3894195:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3927934-3931836:1:exon

LOC116149883
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149883
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3770722..3773439)
location: region:3770722-3773439:-1
so has part: feature:3770722-3773439:-1:exon
subclass of: SO_0000010

116149883
type: Gene
SIO_000068: ncbigene

position:3770722:-1
position: 3770722
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3773439:-1
position: 3773439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3770722-3773439:-1:exon

LOC116149883
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149883
product: heart- and neural crest derivatives-expressed protein 2-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_031442099.1
SIO_010081: LOC116149883
subclass of: SO_0000673
so part of: LOC116149883
location: complement(join(3770722..3771505,3772873..3773439))
location: region:3770722-3773439:-1
so has part: feature:3772873-3773439:-1:exon
so has part: feature:3770722-3771505:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3772873-3773439:-1:exon

position:3772873:-1
position: 3772873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3770722-3771505:-1:exon

position:3771505:-1
position: 3771505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149883
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149883
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: heart- and neural crest derivatives-expressed protein 2-like
translation: MSLVGGFPHHPXVHHEGYPFAAAAAAAAAAXASRCSHEENPYFHGWLIGHPEMSPPDYSMALSYSPEYASGAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKKTDVKEEKRKKELNEILKSTVSSNDKKTKGRTGWPQHVWALELKQ
SIO_010081: LOC116149883
subclass of: SO_0000673
so part of: LOC116149883
location: complement(join(3771407..3771505,3772873..3773424))
location: region:3771407-3773424:-1
so has part: feature:3772873-3773424:-1:exon
so has part: feature:3771407-3771505:-1:exon

XP_031297959.1
type: Protein
SIO_000068: ncbiprotein

position:3771407:-1
position: 3771407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3773424:-1
position: 3773424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3772873-3773424:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3771407-3771505:-1:exon

LOC116149845
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149845
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3775252..3780346
location: region:3775252-3780346:1
so has part: feature:3775252-3780346:1:exon

116149845
type: Gene
SIO_000068: ncbigene

position:3775252:1
position: 3775252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3780346:1
position: 3780346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3775252-3780346:1:exon

LOC116149845
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149845
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149845
subclass of: SO_0000673
so part of: LOC116149845
location: 3775252..3775390
location: region:3775252-3775390:1
so has part: feature:3775252-3775390:1:exon

position:3775390:1
position: 3775390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3775252-3775390:1:exon

LOC116149845
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149845
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149845
subclass of: SO_0000673
so part of: LOC116149845
location: 3775806..3776716
location: region:3775806-3776716:1
so has part: feature:3775806-3776716:1:exon

position:3775806:1
position: 3775806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3776716:1
position: 3776716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3775806-3776716:1:exon

LOC116149845
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149845
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149845
subclass of: SO_0000673
so part of: LOC116149845
location: 3777850..3777995
location: region:3777850-3777995:1
so has part: feature:3777850-3777995:1:exon

position:3777850:1
position: 3777850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3777995:1
position: 3777995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3777850-3777995:1:exon

LOC116149845
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149845
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149845
subclass of: SO_0000673
so part of: LOC116149845
location: 3780034..3780163
location: region:3780034-3780163:1
so has part: feature:3780034-3780163:1:exon

position:3780034:1
position: 3780034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3780163:1
position: 3780163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3780034-3780163:1:exon

LOC116149845
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149845
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149845
subclass of: SO_0000673
so part of: LOC116149845
location: 3780275..3780346
location: region:3780275-3780346:1
so has part: feature:3780275-3780346:1:exon

position:3780275:1
position: 3780275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3780275-3780346:1:exon

LOC116149846
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149846
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3792925..3800829
location: region:3792925-3800829:1
so has part: feature:3792925-3800829:1:exon

116149846
type: Gene
SIO_000068: ncbigene

position:3792925:1
position: 3792925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3800829:1
position: 3800829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3792925-3800829:1:exon

LOC116149846
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149846
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149846
subclass of: SO_0000673
so part of: LOC116149846
location: 3792925..3794447
location: region:3792925-3794447:1
so has part: feature:3792925-3794447:1:exon

position:3794447:1
position: 3794447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3792925-3794447:1:exon

LOC116149846
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149846
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149846
subclass of: SO_0000673
so part of: LOC116149846
location: 3795824..3795937
location: region:3795824-3795937:1
so has part: feature:3795824-3795937:1:exon

position:3795824:1
position: 3795824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3795937:1
position: 3795937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3795824-3795937:1:exon

LOC116149846
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149846
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149846
subclass of: SO_0000673
so part of: LOC116149846
location: 3800292..3800409
location: region:3800292-3800409:1
so has part: feature:3800292-3800409:1:exon

position:3800292:1
position: 3800292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3800409:1
position: 3800409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3800292-3800409:1:exon

LOC116149846
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149846
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149846
subclass of: SO_0000673
so part of: LOC116149846
location: 3800534..3800829
location: region:3800534-3800829:1
so has part: feature:3800534-3800829:1:exon

position:3800534:1
position: 3800534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3800534-3800829:1:exon

LOC105101775
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101775
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3819983..3824151)
location: region:3819983-3824151:-1
so has part: feature:3819983-3824151:-1:exon
subclass of: SO_0000010

105101775
type: Gene
SIO_000068: ncbigene

position:3819983:-1
position: 3819983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3824151:-1
position: 3824151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3819983-3824151:-1:exon

LOC105101775
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101775
product: heart- and neural crest derivatives-expressed protein 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442047.1
SIO_010081: LOC105101775
subclass of: SO_0000673
so part of: LOC105101775
location: complement(join(3819983..3820132,3821938..3822051,3823418..3824151))
location: region:3819983-3824151:-1
so has part: feature:3823418-3824151:-1:exon
so has part: feature:3821938-3822051:-1:exon
so has part: feature:3819983-3820132:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3823418-3824151:-1:exon

position:3823418:-1
position: 3823418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3821938-3822051:-1:exon

position:3821938:-1
position: 3821938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3822051:-1
position: 3822051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3819983-3820132:-1:exon

position:3820132:-1
position: 3820132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101775
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 3 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: heart- and neural crest derivatives-expressed protein 2
translation: MSPPDYSMALSYSPEYASGAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGXANRKERRRTQSINSAFAELRGVHPPRARRTKLSKIKXLRLATSYIAYLMDCWPRTTRNGEAEAFKAEIKKTDVKEEKRKKETNLKSTVSSNDKKTKGXTGWPQHVWPWSSSSEKEEEEEPLPRHLRGPTLAVPTGARRRQQGIRRAGREREDGAAGFSWAADNARARG
SIO_010081: LOC105101775
subclass of: SO_0000673
so part of: LOC105101775
location: complement(join(3819983..3820132,3821938..3822051,3823418..3823812))
location: region:3819983-3823812:-1
so has part: feature:3823418-3823812:-1:exon
so has part: feature:3821938-3822051:-1:exon
so has part: feature:3819983-3820132:-1:exon

XP_031297907.1
type: Protein
SIO_000068: ncbiprotein

position:3823812:-1
position: 3823812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3823418-3823812:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3821938-3822051:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3819983-3820132:-1:exon

LOC116149884
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149884
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4180429..4224026)
location: region:4180429-4224026:-1
so has part: feature:4180429-4224026:-1:exon
subclass of: SO_0000011

116149884
type: Gene
SIO_000068: ncbigene

position:4180429:-1
position: 4180429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4224026:-1
position: 4224026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4180429-4224026:-1:exon

LOC116149884
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149884
product: uncharacterized LOC116149884
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_004133482.1
SIO_010081: LOC116149884
subclass of: SO_0000673
so part of: LOC116149884
location: complement(join(4180429..4180510,4223939..4224026))
location: region:4180429-4224026:-1
so has part: feature:4223939-4224026:-1:exon
so has part: feature:4180429-4180510:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4223939-4224026:-1:exon

position:4223939:-1
position: 4223939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4180429-4180510:-1:exon

position:4180510:-1
position: 4180510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXO8
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FBXO8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4274662..4309411)
location: region:4274662-4309411:-1
so has part: feature:4274662-4309411:-1:exon
subclass of: SO_0000010

105101817
type: Gene
SIO_000068: ncbigene

position:4274662:-1
position: 4274662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4309411:-1
position: 4309411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4274662-4309411:-1:exon

FBXO8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FBXO8
product: F-box protein 8, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_010995069.2
SIO_010081: FBXO8
subclass of: SO_0000673
so part of: FBXO8
location: complement(join(4274662..4275300,4276324..4276520,4278414..4278532,4293069..4293195,4295442..4295778,4309173..4309411))
location: region:4274662-4309411:-1
so has part: feature:4309173-4309411:-1:exon
so has part: feature:4295442-4295778:-1:exon
so has part: feature:4293069-4293195:-1:exon
so has part: feature:4278414-4278532:-1:exon
so has part: feature:4276324-4276520:-1:exon
so has part: feature:4274662-4275300:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309173-4309411:-1:exon

position:4309173:-1
position: 4309173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4295442-4295778:-1:exon

position:4295442:-1
position: 4295442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4295778:-1
position: 4295778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4293069-4293195:-1:exon

position:4293069:-1
position: 4293069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4293195:-1
position: 4293195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4278414-4278532:-1:exon

position:4278414:-1
position: 4278414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4278532:-1
position: 4278532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4276324-4276520:-1:exon

position:4276324:-1
position: 4276324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4276520:-1
position: 4276520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4274662-4275300:-1:exon

position:4275300:-1
position: 4275300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXO8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FBXO8
product: F-box protein 8, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_010995060.2
SIO_010081: FBXO8
subclass of: SO_0000673
so part of: FBXO8
location: complement(join(4274662..4275300,4276324..4276520,4278414..4278532,4293069..4293195,4295442..4295778,4308545..4308897))
location: region:4274662-4308897:-1
so has part: feature:4308545-4308897:-1:exon
so has part: feature:4295442-4295778:-1:exon
so has part: feature:4293069-4293195:-1:exon
so has part: feature:4278414-4278532:-1:exon
so has part: feature:4276324-4276520:-1:exon
so has part: feature:4274662-4275300:-1:exon

position:4308897:-1
position: 4308897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4308545-4308897:-1:exon

position:4308545:-1
position: 4308545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4295442-4295778:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4293069-4293195:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4278414-4278532:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4276324-4276520:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4274662-4275300:-1:exon

FBXO8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FBXO8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box only protein 8 isoform X1
translation: MKSQIDPHPQSCLQMGQGLWRVARNQQLQQESYGEQGYLSREQSRRMAASSVSSTSHRKQVQSGIDIYHLLKTRKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNASPDEGVNYLMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDGVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA
SIO_010081: FBXO8
subclass of: SO_0000673
so part of: FBXO8
location: complement(join(4275113..4275300,4276324..4276520,4278414..4278532,4293069..4293195,4295442..4295778,4308545..4308578))
location: region:4275113-4308578:-1
so has part: feature:4308545-4308578:-1:exon
so has part: feature:4295442-4295778:-1:exon
so has part: feature:4293069-4293195:-1:exon
so has part: feature:4278414-4278532:-1:exon
so has part: feature:4276324-4276520:-1:exon
so has part: feature:4275113-4275300:-1:exon

XP_010993362.1
type: Protein
SIO_000068: ncbiprotein

position:4275113:-1
position: 4275113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4308578:-1
position: 4308578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4308545-4308578:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4295442-4295778:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4293069-4293195:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4278414-4278532:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4276324-4276520:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4275113-4275300:-1:exon

FBXO8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FBXO8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box only protein 8 isoform X2
translation: MGQGLWRVARNQQLQQESYGEQGYLSREQSRRMAASSVSSTSHRKQVQSGIDIYHLLKTRKSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCVWQDLANDELLWQGLCKSTWGHCSIYNKNPPLGFSFRKLYMQLDEGSLTFNASPDEGVNYLMSKGILDDSPKEIAKFIFCTRTLNWKKLRIYLDERRDVLDDLVTLHNFRNQFLPNALREFFRHIHAPEERGEYLETLITKFSHRFCACNPDLMRELGLSPDGVYVLCYSLILLSIDLTSPHVKNKMSKREFIRNTRRAAQNISEDFVGHLYDNIYLIGHVAA
SIO_010081: FBXO8
subclass of: SO_0000673
so part of: FBXO8
location: complement(join(4275113..4275300,4276324..4276520,4278414..4278532,4293069..4293195,4295442..4295770))
location: region:4275113-4295770:-1
so has part: feature:4295442-4295770:-1:exon
so has part: feature:4293069-4293195:-1:exon
so has part: feature:4278414-4278532:-1:exon
so has part: feature:4276324-4276520:-1:exon
so has part: feature:4275113-4275300:-1:exon

XP_010993371.1
type: Protein
SIO_000068: ncbiprotein

position:4295770:-1
position: 4295770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4295442-4295770:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4293069-4293195:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4278414-4278532:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4276324-4276520:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4275113-4275300:-1:exon

CEP44
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4309718..4327864
location: region:4309718-4327864:1
so has part: feature:4309718-4327864:1:exon
subclass of: SO_0000010

105101836
type: Gene
SIO_000068: ncbigene

position:4309718:1
position: 4309718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4327864:1
position: 4327864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4309718-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_031442108.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309718..4309945,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326177..4326297,4327348..4327864)
location: region:4309718-4327864:1
so has part: feature:4309718-4309945:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326177-4326297:1:exon
so has part: feature:4327348-4327864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309718-4309945:1:exon

position:4309945:1
position: 4309945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

position:4312177:1
position: 4312177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4312224:1
position: 4312224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

position:4315079:1
position: 4315079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4315213:1
position: 4315213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

position:4317966:1
position: 4317966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4318113:1
position: 4318113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

position:4319639:1
position: 4319639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4319785:1
position: 4319785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

position:4320140:1
position: 4320140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4320262:1
position: 4320262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4321439-4321606:1:exon

position:4321439:1
position: 4321439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4321606:1
position: 4321606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

position:4322954:1
position: 4322954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4323160:1
position: 4323160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

position:4323652:1
position: 4323652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4323727:1
position: 4323727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4326177-4326297:1:exon

position:4326177:1
position: 4326177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4326297:1
position: 4326297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4327348-4327864:1:exon

position:4327348:1
position: 4327348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_031442106.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309718..4309945,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321442..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4309718-4327864:1
so has part: feature:4309718-4309945:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321442-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309718-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4321442-4321606:1:exon

position:4321442:1
position: 4321442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4326173-4326297:1:exon

position:4326173:1
position: 4326173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4326548-4326585:1:exon

position:4326548:1
position: 4326548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4326585:1
position: 4326585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XR_004133483.1
SIO_010081: CEP44
so part of: CEP44
location: join(4309719..4309945,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326177..4326297,4326548..4326585,4327348..4327864)
location: region:4309719-4327864:1
so has part: feature:4309719-4309945:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326177-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

position:4309719:1
position: 4309719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4309719-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4326177-4326297:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031442102.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309720..4309945,4310763..4310867,4311166..4311271,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4309720-4327864:1
so has part: feature:4309720-4309945:1:exon
so has part: feature:4310763-4310867:1:exon
so has part: feature:4311166-4311271:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

position:4309720:1
position: 4309720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4309720-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4310763-4310867:1:exon

position:4310763:1
position: 4310763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4310867:1
position: 4310867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4311166-4311271:1:exon

position:4311166:1
position: 4311166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4311271:1
position: 4311271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_010995081.2
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309720..4309945,4310763..4310867,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4309720-4327864:1
so has part: feature:4309720-4309945:1:exon
so has part: feature:4310763-4310867:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309720-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4310763-4310867:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031442103.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309720..4309945,4311166..4311271,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4309720-4327864:1
so has part: feature:4309720-4309945:1:exon
so has part: feature:4311166-4311271:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309720-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4311166-4311271:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_010995088.2
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309720..4309945,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4309720-4327864:1
so has part: feature:4309720-4309945:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309720-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_031442107.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309720..4309945,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4327348..4327864)
location: region:4309720-4327864:1
so has part: feature:4309720-4309945:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4327348-4327864:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4309720-4309945:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031442104.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4309979..4310044,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4309979-4327864:1
so has part: feature:4309979-4310044:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

position:4309979:1
position: 4309979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4309979-4310044:1:exon

position:4310044:1
position: 4310044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CEP44
product: centrosomal protein 44, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031442105.1
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4310071..4310295,4312177..4312224,4315079..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327864)
location: region:4310071-4327864:1
so has part: feature:4310071-4310295:1:exon
so has part: feature:4312177-4312224:1:exon
so has part: feature:4315079-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327864:1:exon

position:4310071:1
position: 4310071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4310071-4310295:1:exon

position:4310295:1
position: 4310295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4312177-4312224:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4315079-4315213:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4327348-4327864:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X1
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_031297962.1
type: Protein
SIO_000068: ncbiprotein

position:4315125:1
position: 4315125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4327396:1
position: 4327396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X1
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_031297963.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X1
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_031297964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X1
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_031297965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X1
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_010993383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X1
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_010993390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X2
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEETTIQKMERMKKMFEETAELLKCPNHSL
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321442..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4326548..4326585,4327348..4327396)
location: region:4315125-4327396:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321442-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4326548-4326585:1:exon
so has part: feature:4327348-4327396:1:exon

XP_031297966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321442-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4326548-4326585:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4327348-4327396:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X3
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLDRKSKGERQAGVPLSSGYSTVSSDSTPRASTVNYCGLREISEV
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326173..4326297,4327348..4327353)
location: region:4315125-4327353:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326173-4326297:1:exon
so has part: feature:4327348-4327353:1:exon

XP_031297967.1
type: Protein
SIO_000068: ncbiprotein

position:4327353:1
position: 4327353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326173-4326297:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4327348-4327353:1:exon

CEP44
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CEP44
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal protein of 44 kDa isoform X4
translation: MATGDLKRSLRNLEQVLRSLNYPREVDCVGLVKGDTAASLPIISYSLTSYSPYVAELLLESNVELIAKNDSRFIDTVYKLLRDQFNYKPILTKKQFLQCGFAEWKIQIICDILNCVMKKHKELSCVEKTPSQQRKKINSIKSEPCTSGEKTATEPVGIDVTGRFMTSGKKKAVVIRHLYSEGSANLPEDASPVTHVNEAFDTCDPKAPEIEIPELEISEINCEQQDMKVSAEITALRITLAECQEKLKKLTCIESRLESLEEKMKGKVMVNEKTWNNLLSRVTLLETEMLLSKKNDEYMRFNEMSEDCASSSNMGALSLEKAKGRGKQASLCPLATAQCRRIQLPGPPPLTTVV
SIO_010081: CEP44
subclass of: SO_0000673
so part of: CEP44
location: join(4315125..4315213,4317966..4318113,4319639..4319785,4320140..4320262,4321439..4321606,4322954..4323160,4323652..4323727,4326177..4326283)
location: region:4315125-4326283:1
so has part: feature:4315125-4315213:1:exon
so has part: feature:4317966-4318113:1:exon
so has part: feature:4319639-4319785:1:exon
so has part: feature:4320140-4320262:1:exon
so has part: feature:4321439-4321606:1:exon
so has part: feature:4322954-4323160:1:exon
so has part: feature:4323652-4323727:1:exon
so has part: feature:4326177-4326283:1:exon

XP_031297968.1
type: Protein
SIO_000068: ncbiprotein

position:4326283:1
position: 4326283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4315125-4315213:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4317966-4318113:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4319639-4319785:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4320140-4320262:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4321439-4321606:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4322954-4323160:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4323652-4323727:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4326177-4326283:1:exon

HPGD
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: HPGD
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4408110..4436784)
location: region:4408110-4436784:-1
so has part: feature:4408110-4436784:-1:exon
subclass of: SO_0000010

105101863
type: Gene
SIO_000068: ncbigene

position:4408110:-1
position: 4408110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4436784:-1
position: 4436784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4408110-4436784:-1:exon

HPGD
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HPGD
product: 15-hydroxyprostaglandin dehydrogenase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442109.1
SIO_010081: HPGD
subclass of: SO_0000673
so part of: HPGD
location: complement(join(4408110..4409111,4410094..4410257,4413048..4413124,4425235..4425331,4432831..4432937,4436024..4436176,4436419..4436784))
location: region:4408110-4436784:-1
so has part: feature:4436419-4436784:-1:exon
so has part: feature:4436024-4436176:-1:exon
so has part: feature:4432831-4432937:-1:exon
so has part: feature:4425235-4425331:-1:exon
so has part: feature:4413048-4413124:-1:exon
so has part: feature:4410094-4410257:-1:exon
so has part: feature:4408110-4409111:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4436419-4436784:-1:exon

position:4436419:-1
position: 4436419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4436024-4436176:-1:exon

position:4436024:-1
position: 4436024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4436176:-1
position: 4436176
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4432831-4432937:-1:exon

position:4432831:-1
position: 4432831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4432937:-1
position: 4432937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4425235-4425331:-1:exon

position:4425235:-1
position: 4425235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4425331:-1
position: 4425331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4413048-4413124:-1:exon

position:4413048:-1
position: 4413048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4413124:-1
position: 4413124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4410094-4410257:-1:exon

position:4410094:-1
position: 4410094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4410257:-1
position: 4410257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4408110-4409111:-1:exon

position:4409111:-1
position: 4409111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HPGD
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HPGD
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(join(4436175..4436176, 4436419)),aa:OTHER)
product: LOW QUALITY PROTEIN: 15-hydroxyprostaglandin dehydrogenase [NAD(+)]
translation: MHVNGKVALVTSAAQGHRPASVEALXPGLLLSGLQVALVDWNPEAGSKCKAALDESLKPQKTLFIQCMWPTRSQLRDTFRKVVDHFGKLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMNSGVRLNVICPGFVNTPILKSIEKEENMGQYIEYTGHIKDMMEFYGILDPSMIASGLITLIEDDALNGAIMKITASKGIHFQDYDTTPFHTKTQ
SIO_010081: HPGD
subclass of: SO_0000673
so part of: HPGD
location: complement(join(4408973..4409111,4410094..4410257,4413048..4413124,4425235..4425331,4432831..4432937,4436024..4436176,4436419..4436494))
location: region:4408973-4436494:-1
so has part: feature:4436419-4436494:-1:exon
so has part: feature:4436024-4436176:-1:exon
so has part: feature:4432831-4432937:-1:exon
so has part: feature:4425235-4425331:-1:exon
so has part: feature:4413048-4413124:-1:exon
so has part: feature:4410094-4410257:-1:exon
so has part: feature:4408973-4409111:-1:exon

XP_031297969.1
type: Protein
SIO_000068: ncbiprotein

position:4408973:-1
position: 4408973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4436494:-1
position: 4436494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4436419-4436494:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4436024-4436176:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4432831-4432937:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4425235-4425331:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4413048-4413124:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4410094-4410257:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4408973-4409111:-1:exon

GLRA3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GLRA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4517682..4657963)
location: region:4517682-4657963:-1
so has part: feature:4517682-4657963:-1:exon
subclass of: SO_0000010

105101871
type: Gene
SIO_000068: ncbigene

position:4517682:-1
position: 4517682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4657963:-1
position: 4657963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4517682-4657963:-1:exon

GLRA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GLRA3
product: glycine receptor alpha 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010995137.2
SIO_010081: GLRA3
subclass of: SO_0000673
so part of: GLRA3
location: complement(join(4517682..4518522,4531093..4531236,4548929..4549143,4550874..4551011,4571467..4571549,4582756..4582979,4606557..4606624,4623182..4623309,4656912..4657963))
location: region:4517682-4657963:-1
so has part: feature:4656912-4657963:-1:exon
so has part: feature:4623182-4623309:-1:exon
so has part: feature:4606557-4606624:-1:exon
so has part: feature:4582756-4582979:-1:exon
so has part: feature:4571467-4571549:-1:exon
so has part: feature:4550874-4551011:-1:exon
so has part: feature:4548929-4549143:-1:exon
so has part: feature:4531093-4531236:-1:exon
so has part: feature:4517682-4518522:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4656912-4657963:-1:exon

position:4656912:-1
position: 4656912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4623182-4623309:-1:exon

position:4623182:-1
position: 4623182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4623309:-1
position: 4623309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4606557-4606624:-1:exon

position:4606557:-1
position: 4606557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4606624:-1
position: 4606624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4582756-4582979:-1:exon

position:4582756:-1
position: 4582756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4582979:-1
position: 4582979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4571467-4571549:-1:exon

position:4571467:-1
position: 4571467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4571549:-1
position: 4571549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4550874-4551011:-1:exon

position:4550874:-1
position: 4550874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4551011:-1
position: 4551011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4548929-4549143:-1:exon

position:4548929:-1
position: 4548929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4549143:-1
position: 4549143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4531093-4531236:-1:exon

position:4531093:-1
position: 4531093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4531236:-1
position: 4531236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4517682-4518522:-1:exon

position:4518522:-1
position: 4518522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GLRA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GLRA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glycine receptor subunit alpha-3
translation: MAYVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKDDEVRESRFSFTPYGMGPCLQTKDGVTPKGTNHPVQVMPKSPDEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
SIO_010081: GLRA3
subclass of: SO_0000673
so part of: GLRA3
location: complement(join(4518244..4518522,4531093..4531236,4548929..4549143,4550874..4551011,4571467..4571549,4582756..4582979,4606557..4606624,4623182..4623309,4656912..4656982))
location: region:4518244-4656982:-1
so has part: feature:4656912-4656982:-1:exon
so has part: feature:4623182-4623309:-1:exon
so has part: feature:4606557-4606624:-1:exon
so has part: feature:4582756-4582979:-1:exon
so has part: feature:4571467-4571549:-1:exon
so has part: feature:4550874-4551011:-1:exon
so has part: feature:4548929-4549143:-1:exon
so has part: feature:4531093-4531236:-1:exon
so has part: feature:4518244-4518522:-1:exon

XP_010993439.1
type: Protein
SIO_000068: ncbiprotein

position:4518244:-1
position: 4518244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4656982:-1
position: 4656982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4656912-4656982:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4623182-4623309:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4606557-4606624:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4582756-4582979:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4571467-4571549:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4550874-4551011:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4548929-4549143:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4531093-4531236:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4518244-4518522:-1:exon

LOC105102915
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105102915
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4705966..4708177
location: region:4705966-4708177:1
so has part: feature:4705966-4708177:1:exon
subclass of: SO_0000010

105102915
type: Gene
SIO_000068: ncbigene

position:4705966:1
position: 4705966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4708177:1
position: 4708177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4705966-4708177:1:exon

LOC105102915
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105102915
product: disintegrin and metalloproteinase domain-containing protein 29
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 24% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010996406.2
SIO_010081: LOC105102915
subclass of: SO_0000673
so part of: LOC105102915
location: 4705966..4708177
location: region:4705966-4708177:1
so has part: feature:4705966-4708177:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4705966-4708177:1:exon

LOC105102915
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105102915
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: disintegrin and metalloproteinase domain-containing protein 29
translation: MRIIPLLHWLGVFLYFSGHTQAEHPQYHSPPEVVIPLKVPDTSRGMKPKGWLSYSLHFGGQRHVVHMKVKKHLLSRHLPVFTYTDQGALLEDHPFVQNDCYYHGYVEGDPESLVALSTCFGGLQGLLQINDVVYEIKPKIFSTKFEHLVYKMDSEETQFPTMKSGIMEEETVSQFEFQEIGNATLKQSGIEGWWVHVYIVEIAVVVDNALYHQFKKNVTKLKENIFLIVNIVDSIYEDMGIKVFMFGMEIWTEKNHVEVDAVKRSLRDFCEWKAENIDARIAHDTVHLFINRTLRGLTGLGYIAGMCRSKFSCAVVSFGGKTLPIIAIAMAHHIGHNLGMSHDEVTCVCAEGFYRCIMNADNPPIVKFSNCSYSLFWGYTVHTAKCLHYTIYTKDIFSRTRCGNGVVEEGEQCDCGSLQSCSKDACCLTNCTLSFGSACAFGLCCKDCNFLPSGEMCRKEVNECDLPEWCNGTSHMCPDDVYVEDGIPCNESAYCYEKRCSDRDTQCRQIFGQKAKNAKNTCYKQVNTQGDRFGNCGVENFTYLKCSMSDSLCGRIQCDSVAEIPRLKDHSTVHGTRVNNTTCWGIDYHIGMTIPDIGEVNDGTECGPEHVCIQKKCVHLSHLDSDCSPKFCNMRGICNNKHHCHCNYLWDPPNCLIRGHGGSVDSGPPPKRKKIKKIYLIFPCLLLLLLLLCCLIYTCLKKKPKEKKGNIQPRPEKSRQKTQTPRGK
SIO_010081: LOC105102915
subclass of: SO_0000673
so part of: LOC105102915
location: 4705991..4708177
location: region:4705991-4708177:1
so has part: feature:4705991-4708177:1:exon

XP_010994708.2
type: Protein
SIO_000068: ncbiprotein

position:4705991:1
position: 4705991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4705991-4708177:1:exon

LOC105102926
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105102926
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4714045..4741622
location: region:4714045-4741622:1
so has part: feature:4714045-4741622:1:exon
subclass of: SO_0000010

105102926
type: Gene
SIO_000068: ncbigene

position:4714045:1
position: 4714045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4741622:1
position: 4741622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4714045-4741622:1:exon

LOC105102926
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105102926
product: disintegrin and metalloproteinase domain-containing protein 20-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
transcript id: XM_010996416.2
SIO_010081: LOC105102926
subclass of: SO_0000673
so part of: LOC105102926
location: join(4714045..4714077,4714234..4714463,4724518..4726626,4741601..4741622)
location: region:4714045-4741622:1
so has part: feature:4714045-4714077:1:exon
so has part: feature:4714234-4714463:1:exon
so has part: feature:4724518-4726626:1:exon
so has part: feature:4741601-4741622:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4714045-4714077:1:exon

position:4714077:1
position: 4714077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4714234-4714463:1:exon

position:4714234:1
position: 4714234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4714463:1
position: 4714463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4724518-4726626:1:exon

position:4724518:1
position: 4724518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4726626:1
position: 4726626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4741601-4741622:1:exon

position:4741601:1
position: 4741601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105102926
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105102926
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: disintegrin and metalloproteinase domain-containing protein 20-like
translation: MAAEPAAPESWSGVHLPTLVMAKTPILAPSPHLPPLAAVEPVTKQTPDVVETPTTLGPQTVTPEAARHQMTLVIQAARRTPGNTYDICLLSPVAPYPGARMAVGEALAHVRTTLPLLLWSQLLLLLSGSSCVGRSQRHGPPEVVIPLRVTHTGRGVKPPGWLSYSLRVGGRKHVLHMKVNKHLFSQHFPVFTYDDQHAFLEDQPFVQNDCYYQGHVEGDPESLVALSTCLRGFRGILQINNIVYEIQPKRLSTSFEHLLYRMDEEETQLPPMRCGLTDEEIARQLKFQESVESTLMQSGYEGWWTHRRFLELAVVVDHNRYLHHESNTSKVQDEVCLTINIIDNILSTIDVHVVLIGIEIWSEQNYLATDDIDDLLSEFCVWKLSGFNVRLPHDVAHIFVKADFGITVGLAYVGSVCQQQYNCGVDSILDDDLNSLGFIVSHELGHNLGMKHDDNTCTCGRKRCVMYPSKSLIHKFSNCSYAYYWDTVRRKSCLNLLPKKESIFMYTRCGNSVLEEGEECDCGSLQTCTKDPCCQPDCTLKPGADCAFGLCCDNCTFRPPGFLCRKEENECDLPEWCNGTSYQCPEDVYRQDGTSCTGGGYCYEKRCNNRNEQCRQIFGKEAKSANQDCYREVNIQGDRFGNCGVRVTSYVKCGISDILCGRVQCENVTEIPVLRDHTTVSWTHFNGVTCWGTDYHFGMTIPDAGEVKDGTECGAGRICIQRKCVLMSTLKSSCSPETCNLNGVCNSRHHCHCRSGWAPPSCLDEGSGGSVDSGPPPQKPEVKKENMLGKSAAALAV
SIO_010081: LOC105102926
subclass of: SO_0000673
so part of: LOC105102926
location: join(4714045..4714077,4714234..4714463,4724518..4726626,4741601..4741622)
location: region:4714045-4741622:1
so has part: feature:4714045-4714077:1:exon
so has part: feature:4714234-4714463:1:exon
so has part: feature:4724518-4726626:1:exon
so has part: feature:4741601-4741622:1:exon

XP_010994718.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4714045-4714077:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4714234-4714463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4724518-4726626:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4741601-4741622:1:exon

LOC116149924
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149924
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 4729863..4729960
location: region:4729863-4729960:1
so has part: feature:4729863-4729960:1:exon

116149924
type: Gene
SIO_000068: ncbigene

position:4729863:1
position: 4729863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4729960:1
position: 4729960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4729863-4729960:1:exon

LOC116149924
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149924
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116149924
subclass of: SO_0000673
so part of: LOC116149924
location: 4729863..4729960
location: region:4729863-4729960:1
so has part: feature:4729863-4729960:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4729863-4729960:1:exon

LOC105102936
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105102936
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <4741666..4743984
location: region:4741666-4743984:1
so has part: feature:4741666-4743984:1:exon
subclass of: SO_0000010

105102936
type: Gene
SIO_000068: ncbigene

position:4741666:1
position: 4741666
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4743984:1
position: 4743984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4741666-4743984:1:exon

LOC105102936
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105102936
product: disintegrin and metalloproteinase domain-containing protein 20-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 15% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010996425.2
SIO_010081: LOC105102936
subclass of: SO_0000673
so part of: LOC105102936
location: <4741666..4743984
location: region:4741666-4743984:1
so has part: feature:4741666-4743984:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4741666-4743984:1:exon

LOC105102936
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105102936
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; deleted 2 bases in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:4742804..4742806,aa:OTHER)
transl except: (pos:4742873..4742875,aa:OTHER)
product: LOW QUALITY PROTEIN: disintegrin and metalloproteinase domain-containing protein 20-like
translation: CVLPCTLLLSPVAPYPGARMAVGEALAHVRTTLPLLLWSQLLLLLSGSSCVGHAQRHGPPEVVIPLRVTHTGRGVKPPGWLSYSLHVRGRKHVLHMKVNKHLFSQHFPVFTYDDQHALLEDQPFVQNDCYYQGHVEGDPESLVALSTCLRGFRGILQINNIVYEIQPKRLSTSFEHLLYRMDEEETQLPLMRCGLTDEEIARQLKFQESDESTLMQSGYEGWWTHRRFLELAVVVDHNRYLHHENNASKVQDEVCIVAHIIGNFLNSLDVKVLLIGIEIWTKENPVSIDNIESLLEEFCSWKKVSFNTRMPHDAAHVFVKKQYNINIGLAYIGSVCNQRFNCGVDSFMGESLYSVAYTASHEIGXSLGMPHDDGDCECGSXTCIMSPTKLTAVSFSNCSYAAYXNSSAQKTCLNLSPNTENIFTYKHCGNSVVDEGEECDCGPTYTCAIDPCCQPDCTLTPGADCAFGLCCDNCEFIPSGYVCRKEENECDLPEWCNGTSYQCPEDVYRQDGTSCTGGGYCYERRCNNRNEQCRQIFGKEAKSANQDCYREVNIQGDRFGNCGVRVTSYVKCGISDILCGRVQCENVTKIPVLRDHTTVRWTHFNGVTCWGTDYHFGMTIPDAGEVKDGTECGAGRICIQRKCVLMSTLKCSCSPETCNTNGVCNNRHHCHCRSGWPPGGPPPSCLDEGSGGSVDSGPPPRKQEEKVEDKIYLQLFWWIPFFVLLCFLLLLFRRRQKSPKKQEENVSISPTEEKTVLSSPTKEEQSLPTSPQ
SIO_010081: LOC105102936
subclass of: SO_0000673
so part of: LOC105102936
location: <4741666..4743984
location: region:4741666-4743984:1
so has part: feature:4741666-4743984:1:exon

XP_010994727.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4741666-4743984:1:exon

LOC116149859
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149859
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4804638..4808746
location: region:4804638-4808746:1
so has part: feature:4804638-4808746:1:exon
subclass of: SO_0000010

116149859
type: Gene
SIO_000068: ncbigene

position:4804638:1
position: 4804638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4808746:1
position: 4808746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4804638-4808746:1:exon

LOC116149859
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149859
product: beta-defensin 43-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442062.1
SIO_010081: LOC116149859
subclass of: SO_0000673
so part of: LOC116149859
location: join(4804638..4804695,4808443..4808746)
location: region:4804638-4808746:1
so has part: feature:4804638-4804695:1:exon
so has part: feature:4808443-4808746:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4804638-4804695:1:exon

position:4804695:1
position: 4804695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4808443-4808746:1:exon

position:4808443:1
position: 4808443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149859
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149859
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-defensin 43-like
translation: MRVLLSILGVLALLSMVPQARSFFHERCPSGYYNCRMKCNADEYAIRYCADWSICCRARKSEFRRKKK
SIO_010081: LOC116149859
subclass of: SO_0000673
so part of: LOC116149859
location: join(4804638..4804695,4808443..4808591)
location: region:4804638-4808591:1
so has part: feature:4804638-4804695:1:exon
so has part: feature:4808443-4808591:1:exon

XP_031297922.1
type: Protein
SIO_000068: ncbiprotein

position:4808591:1
position: 4808591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4804638-4804695:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4808443-4808591:1:exon

LOC116149878
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149878
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4815278..4817411
location: region:4815278-4817411:1
so has part: feature:4815278-4817411:1:exon
subclass of: SO_0000010

116149878
type: Gene
SIO_000068: ncbigene

position:4815278:1
position: 4815278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4817411:1
position: 4817411
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4815278-4817411:1:exon

LOC116149878
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149878
product: beta-defensin 134-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_031442094.1
SIO_010081: LOC116149878
subclass of: SO_0000673
so part of: LOC116149878
location: join(4815278..4815335,4817269..4817411)
location: region:4815278-4817411:1
so has part: feature:4815278-4815335:1:exon
so has part: feature:4817269-4817411:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4815278-4815335:1:exon

position:4815335:1
position: 4815335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4817269-4817411:1:exon

position:4817269:1
position: 4817269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149878
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149878
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-defensin 134-like
translation: MMPLLIVFVFLFFWNPALTGLNPLYSEMHKRCYENGTCRFECHVSEMLVAYCKFQLECCIKGNPDP
SIO_010081: LOC116149878
subclass of: SO_0000673
so part of: LOC116149878
location: join(4815278..4815335,4817269..4817411)
location: region:4815278-4817411:1
so has part: feature:4815278-4815335:1:exon
so has part: feature:4817269-4817411:1:exon

XP_031297954.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4815278-4815335:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4817269-4817411:1:exon

LOC116149877
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149877
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4833033..4835166
location: region:4833033-4835166:1
so has part: feature:4833033-4835166:1:exon
subclass of: SO_0000010

116149877
type: Gene
SIO_000068: ncbigene

position:4833033:1
position: 4833033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4835166:1
position: 4835166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4833033-4835166:1:exon

LOC116149877
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149877
product: beta-defensin 134-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_031442093.1
SIO_010081: LOC116149877
subclass of: SO_0000673
so part of: LOC116149877
location: join(4833033..4833090,4835024..4835166)
location: region:4833033-4835166:1
so has part: feature:4833033-4833090:1:exon
so has part: feature:4835024-4835166:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4833033-4833090:1:exon

position:4833090:1
position: 4833090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4835024-4835166:1:exon

position:4835024:1
position: 4835024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149877
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149877
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-defensin 134-like
translation: MMPLLIVFVFLFFWNPALTGLNPLYSEMHKRCYENGTCRFECHVSEMLVAYCKFQLECCIKGNPDP
SIO_010081: LOC116149877
subclass of: SO_0000673
so part of: LOC116149877
location: join(4833033..4833090,4835024..4835166)
location: region:4833033-4835166:1
so has part: feature:4833033-4833090:1:exon
so has part: feature:4835024-4835166:1:exon

XP_031297953.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4833033-4833090:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4835024-4835166:1:exon

DEFB135
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: DEFB135
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4844557..4861710)
location: region:4844557-4861710:-1
so has part: feature:4844557-4861710:-1:exon
subclass of: SO_0000010

116149847
type: Gene
SIO_000068: ncbigene

position:4844557:-1
position: 4844557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4861710:-1
position: 4861710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4844557-4861710:-1:exon

DEFB135
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: DEFB135
product: defensin beta 135
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_031442048.1
SIO_010081: DEFB135
subclass of: SO_0000673
so part of: DEFB135
location: complement(join(4844557..4844726,4861611..4861710))
location: region:4844557-4861710:-1
so has part: feature:4861611-4861710:-1:exon
so has part: feature:4844557-4844726:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4861611-4861710:-1:exon

position:4861611:-1
position: 4861611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4844557-4844726:-1:exon

position:4844726:-1
position: 4844726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DEFB135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: DEFB135
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-defensin 135
translation: MAMNNGALMGHGAGSRSRSNPWPEDQSARQQHQVRSGPNAYIRNFFNTCWRMKGLCKGKCSSGEIYHILCDTSLLCCVHKKYMPLQLGE
SIO_010081: DEFB135
subclass of: SO_0000673
so part of: DEFB135
location: complement(join(4844557..4844726,4861611..4861710))
location: region:4844557-4861710:-1
so has part: feature:4861611-4861710:-1:exon
so has part: feature:4844557-4844726:-1:exon

XP_031297908.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4861611-4861710:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4844557-4844726:-1:exon

CTSB
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CTSB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4911661..4929813
location: region:4911661-4929813:1
so has part: feature:4911661-4929813:1:exon
subclass of: SO_0000010

105101888
type: Gene
SIO_000068: ncbigene

position:4911661:1
position: 4911661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4929813:1
position: 4929813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4911661-4929813:1:exon

CTSB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CTSB
product: cathepsin B, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031442111.1
SIO_010081: CTSB
subclass of: SO_0000673
so part of: CTSB
location: join(4911661..4911811,4922326..4922476,4923382..4923467,4924225..4924339,4925484..4925602,4926346..4926431,4926713..4926856,4926975..4927091,4928278..4928406,4928743..4929813)
location: region:4911661-4929813:1
so has part: feature:4911661-4911811:1:exon
so has part: feature:4922326-4922476:1:exon
so has part: feature:4923382-4923467:1:exon
so has part: feature:4924225-4924339:1:exon
so has part: feature:4925484-4925602:1:exon
so has part: feature:4926346-4926431:1:exon
so has part: feature:4926713-4926856:1:exon
so has part: feature:4926975-4927091:1:exon
so has part: feature:4928278-4928406:1:exon
so has part: feature:4928743-4929813:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4911661-4911811:1:exon

position:4911811:1
position: 4911811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4922326-4922476:1:exon

position:4922326:1
position: 4922326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4922476:1
position: 4922476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4923382-4923467:1:exon

position:4923382:1
position: 4923382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4923467:1
position: 4923467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4924225-4924339:1:exon

position:4924225:1
position: 4924225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4924339:1
position: 4924339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4925484-4925602:1:exon

position:4925484:1
position: 4925484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4925602:1
position: 4925602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4926346-4926431:1:exon

position:4926346:1
position: 4926346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4926431:1
position: 4926431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4926713-4926856:1:exon

position:4926713:1
position: 4926713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4926856:1
position: 4926856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4926975-4927091:1:exon

position:4926975:1
position: 4926975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4927091:1
position: 4927091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4928278-4928406:1:exon

position:4928278:1
position: 4928278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4928406:1
position: 4928406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4928743-4929813:1:exon

position:4928743:1
position: 4928743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CTSB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CTSB
product: cathepsin B, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031442112.1
SIO_010081: CTSB
subclass of: SO_0000673
so part of: CTSB
location: join(4911712..4911811,4916504..4916677,4918495..4918566,4922326..4922476,4923382..4923467,4924225..4924339,4925484..4925602,4926346..4926431,4926713..4926856,4926975..4927091,4928278..4928406,4928743..4929813)
location: region:4911712-4929813:1
so has part: feature:4911712-4911811:1:exon
so has part: feature:4916504-4916677:1:exon
so has part: feature:4918495-4918566:1:exon
so has part: feature:4922326-4922476:1:exon
so has part: feature:4923382-4923467:1:exon
so has part: feature:4924225-4924339:1:exon
so has part: feature:4925484-4925602:1:exon
so has part: feature:4926346-4926431:1:exon
so has part: feature:4926713-4926856:1:exon
so has part: feature:4926975-4927091:1:exon
so has part: feature:4928278-4928406:1:exon
so has part: feature:4928743-4929813:1:exon

position:4911712:1
position: 4911712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4911712-4911811:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4916504-4916677:1:exon

position:4916504:1
position: 4916504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4916677:1
position: 4916677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4918495-4918566:1:exon

position:4918495:1
position: 4918495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4918566:1
position: 4918566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4922326-4922476:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4923382-4923467:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4924225-4924339:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4925484-4925602:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4926346-4926431:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4926713-4926856:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4926975-4927091:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4928278-4928406:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4928743-4929813:1:exon

CTSB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CTSB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin B isoform X1
translation: MWHLLATLGCLLVLTSAQSSVRFPPMSDELIDYVNKRNTTWKAGHNFRNADLSYVKKLCGTFLGGPKLPERVALAGNMALPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGLECGEGCNGGFPSGAWNFWTKQGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGATPKCRKNCEPGYTPSYKDDKHFGCSSYSVPSNQEEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVKGEMMGGHAIRILGWGEENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPCAKQD
SIO_010081: CTSB
subclass of: SO_0000673
so part of: CTSB
location: join(4922351..4922476,4923382..4923467,4924225..4924339,4925484..4925602,4926346..4926431,4926713..4926856,4926975..4927091,4928278..4928406,4928743..4928828)
location: region:4922351-4928828:1
so has part: feature:4922351-4922476:1:exon
so has part: feature:4923382-4923467:1:exon
so has part: feature:4924225-4924339:1:exon
so has part: feature:4925484-4925602:1:exon
so has part: feature:4926346-4926431:1:exon
so has part: feature:4926713-4926856:1:exon
so has part: feature:4926975-4927091:1:exon
so has part: feature:4928278-4928406:1:exon
so has part: feature:4928743-4928828:1:exon

XP_031297971.1
type: Protein
SIO_000068: ncbiprotein

position:4922351:1
position: 4922351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4928828:1
position: 4928828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4922351-4922476:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4923382-4923467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4924225-4924339:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4925484-4925602:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4926346-4926431:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4926713-4926856:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4926975-4927091:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4928278-4928406:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4928743-4928828:1:exon

CTSB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CTSB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin B isoform X1
translation: MWHLLATLGCLLVLTSAQSSVRFPPMSDELIDYVNKRNTTWKAGHNFRNADLSYVKKLCGTFLGGPKLPERVALAGNMALPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGLECGEGCNGGFPSGAWNFWTKQGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGATPKCRKNCEPGYTPSYKDDKHFGCSSYSVPSNQEEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVKGEMMGGHAIRILGWGEENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPCAKQD
SIO_010081: CTSB
subclass of: SO_0000673
so part of: CTSB
location: join(4922351..4922476,4923382..4923467,4924225..4924339,4925484..4925602,4926346..4926431,4926713..4926856,4926975..4927091,4928278..4928406,4928743..4928828)
location: region:4922351-4928828:1
so has part: feature:4922351-4922476:1:exon
so has part: feature:4923382-4923467:1:exon
so has part: feature:4924225-4924339:1:exon
so has part: feature:4925484-4925602:1:exon
so has part: feature:4926346-4926431:1:exon
so has part: feature:4926713-4926856:1:exon
so has part: feature:4926975-4927091:1:exon
so has part: feature:4928278-4928406:1:exon
so has part: feature:4928743-4928828:1:exon

XP_031297972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4922351-4922476:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4923382-4923467:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4924225-4924339:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4925484-4925602:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4926346-4926431:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4926713-4926856:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4926975-4927091:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4928278-4928406:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4928743-4928828:1:exon

CTSB
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CTSB
product: cathepsin B, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442113.1
SIO_010081: CTSB
subclass of: SO_0000673
so part of: CTSB
location: join(4924266..4924339,4926346..4926431,4926713..4926856,4926975..4927091,4928278..4928406,4928743..4929813)
location: region:4924266-4929813:1
so has part: feature:4924266-4924339:1:exon
so has part: feature:4926346-4926431:1:exon
so has part: feature:4926713-4926856:1:exon
so has part: feature:4926975-4927091:1:exon
so has part: feature:4928278-4928406:1:exon
so has part: feature:4928743-4929813:1:exon

position:4924266:1
position: 4924266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4924266-4924339:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4926346-4926431:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4926713-4926856:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4926975-4927091:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4928278-4928406:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4928743-4929813:1:exon

CTSB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CTSB
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cathepsin B isoform X2
translation: MPGSSGQTARPSKRSETRVPVAPAGCNGGFPSGAWNFWTKQGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGATPKCRKNCEPGYTPSYKDDKHFGCSSYSVPSNQEEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVKGEMMGGHAIRILGWGEENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPCAKQD
SIO_010081: CTSB
subclass of: SO_0000673
so part of: CTSB
location: join(4924266..4924339,4926346..4926431,4926713..4926856,4926975..4927091,4928278..4928406,4928743..4928828)
location: region:4924266-4928828:1
so has part: feature:4924266-4924339:1:exon
so has part: feature:4926346-4926431:1:exon
so has part: feature:4926713-4926856:1:exon
so has part: feature:4926975-4927091:1:exon
so has part: feature:4928278-4928406:1:exon
so has part: feature:4928743-4928828:1:exon

XP_031297973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4924266-4924339:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4926346-4926431:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4926713-4926856:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4926975-4927091:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4928278-4928406:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4928743-4928828:1:exon

FDFT1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FDFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4933175..4963821)
location: region:4933175-4963821:-1
so has part: feature:4933175-4963821:-1:exon
subclass of: SO_0000010

105101899
type: Gene
SIO_000068: ncbigene

position:4933175:-1
position: 4933175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4963821:-1
position: 4963821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4933175-4963821:-1:exon

FDFT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FDFT1
product: farnesyl-diphosphate farnesyltransferase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_031442110.1
SIO_010081: FDFT1
subclass of: SO_0000673
so part of: FDFT1
location: complement(join(4933175..4934021,4939896..4940048,4941170..4941346,4945188..4945379,4948246..4948374,4953445..4953628,4954473..4954570,4963633..4963821))
location: region:4933175-4963821:-1
so has part: feature:4963633-4963821:-1:exon
so has part: feature:4954473-4954570:-1:exon
so has part: feature:4953445-4953628:-1:exon
so has part: feature:4948246-4948374:-1:exon
so has part: feature:4945188-4945379:-1:exon
so has part: feature:4941170-4941346:-1:exon
so has part: feature:4939896-4940048:-1:exon
so has part: feature:4933175-4934021:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4963633-4963821:-1:exon

position:4963633:-1
position: 4963633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4954473-4954570:-1:exon

position:4954473:-1
position: 4954473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4954570:-1
position: 4954570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4953445-4953628:-1:exon

position:4953445:-1
position: 4953445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4953628:-1
position: 4953628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4948246-4948374:-1:exon

position:4948246:-1
position: 4948246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4948374:-1
position: 4948374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4945188-4945379:-1:exon

position:4945188:-1
position: 4945188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4945379:-1
position: 4945379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4941170-4941346:-1:exon

position:4941170:-1
position: 4941170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4941346:-1
position: 4941346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4939896-4940048:-1:exon

position:4939896:-1
position: 4939896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4940048:-1
position: 4940048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4933175-4934021:-1:exon

position:4934021:-1
position: 4934021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FDFT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FDFT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: squalene synthase
translation: MEFVKCLGHPEEFYNLLRFQMGGRQKVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIEALDGEMRHAVCIFYLVLRALDTLEDDMTISIEKKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFPTISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKQVTSAQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQREGREFWPREVWGKYVKKLGDFAKPENVDVAVQCLNELITNTLHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFRGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYQRIPDSDQCSGKTRQIISTIRTQNLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSALSQVTEDYVQTGEH
SIO_010081: FDFT1
subclass of: SO_0000673
so part of: FDFT1
location: complement(join(4933800..4934021,4939896..4940048,4941170..4941346,4945188..4945379,4948246..4948374,4953445..4953628,4954473..4954570,4963633..4963731))
location: region:4933800-4963731:-1
so has part: feature:4963633-4963731:-1:exon
so has part: feature:4954473-4954570:-1:exon
so has part: feature:4953445-4953628:-1:exon
so has part: feature:4948246-4948374:-1:exon
so has part: feature:4945188-4945379:-1:exon
so has part: feature:4941170-4941346:-1:exon
so has part: feature:4939896-4940048:-1:exon
so has part: feature:4933800-4934021:-1:exon

XP_031297970.1
type: Protein
SIO_000068: ncbiprotein

position:4933800:-1
position: 4933800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4963731:-1
position: 4963731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4963633-4963731:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4954473-4954570:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4953445-4953628:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4948246-4948374:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4945188-4945379:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4941170-4941346:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4939896-4940048:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4933800-4934021:-1:exon

NEIL2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: NEIL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4969450..4989909)
location: region:4969450-4989909:-1
so has part: feature:4969450-4989909:-1:exon
subclass of: SO_0000010

105101910
type: Gene
SIO_000068: ncbigene

position:4969450:-1
position: 4969450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4989909:-1
position: 4989909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4969450-4989909:-1:exon

NEIL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEIL2
product: nei like DNA glycosylase 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_010995168.2
SIO_010081: NEIL2
subclass of: SO_0000673
so part of: NEIL2
location: complement(join(4969450..4970429,4972291..4972487,4977496..4977833,4979959..4980098,4989760..4989909))
location: region:4969450-4989909:-1
so has part: feature:4989760-4989909:-1:exon
so has part: feature:4979959-4980098:-1:exon
so has part: feature:4977496-4977833:-1:exon
so has part: feature:4972291-4972487:-1:exon
so has part: feature:4969450-4970429:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4989760-4989909:-1:exon

position:4989760:-1
position: 4989760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4979959-4980098:-1:exon

position:4979959:-1
position: 4979959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4980098:-1
position: 4980098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4977496-4977833:-1:exon

position:4977496:-1
position: 4977496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4977833:-1
position: 4977833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4972291-4972487:-1:exon

position:4972291:-1
position: 4972291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4972487:-1
position: 4972487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4969450-4970429:-1:exon

position:4970429:-1
position: 4970429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NEIL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEIL2
product: nei like DNA glycosylase 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_031442114.1
SIO_010081: NEIL2
subclass of: SO_0000673
so part of: NEIL2
location: complement(join(4969450..4970429,4972291..4972487,4977496..4977833,4979959..4980098,4982787..4982919))
location: region:4969450-4982919:-1
so has part: feature:4982787-4982919:-1:exon
so has part: feature:4979959-4980098:-1:exon
so has part: feature:4977496-4977833:-1:exon
so has part: feature:4972291-4972487:-1:exon
so has part: feature:4969450-4970429:-1:exon

position:4982919:-1
position: 4982919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4982787-4982919:-1:exon

position:4982787:-1
position: 4982787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4979959-4980098:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4977496-4977833:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4972291-4972487:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4969450-4970429:-1:exon

NEIL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NEIL2
product: nei like DNA glycosylase 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_010995170.2
SIO_010081: NEIL2
subclass of: SO_0000673
so part of: NEIL2
location: complement(join(4969450..4970429,4972291..4972487,4977496..4977833,4979959..4980098,4982343..4982563))
location: region:4969450-4982563:-1
so has part: feature:4982343-4982563:-1:exon
so has part: feature:4979959-4980098:-1:exon
so has part: feature:4977496-4977833:-1:exon
so has part: feature:4972291-4972487:-1:exon
so has part: feature:4969450-4970429:-1:exon

position:4982563:-1
position: 4982563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4982343-4982563:-1:exon

position:4982343:-1
position: 4982343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4979959-4980098:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4977496-4977833:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4972291-4972487:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4969450-4970429:-1:exon

NEIL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEIL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endonuclease 8-like 2
translation: MPEGPSVRKFHHLVSPFVGQQVVRTGGSSQKLNPASFESLWLQDTQVHGKKLFLRFDPDEQIVSPGNNPLPEPLQKSEQKEEAGHQQKVSEQSSLSPGGADALPSGDDGPQHLGEDTPAGGAERWLQVRFGLFGSVWVNEFSRAKKANKRGDWRDPIPRLVLHFGGGGFLAFYNCQMSWSSSPVVSPTSDILSEEFHRGQALEALGRDQPVCYTLLDQRYFSGLGNIIKNEVLYRAGIHPLSPGSRLDPPRLEALVDHVLAFSAAWLQGKFQGTQQHTQVYQKQQCPAGHQVMKEALGPPGGLQRLTWWCPQCQPRLSPDEPGAQAPSSQDLALKGP
SIO_010081: NEIL2
subclass of: SO_0000673
so part of: NEIL2
location: complement(join(4970089..4970429,4972291..4972487,4977496..4977833,4979959..4980096))
location: region:4970089-4980096:-1
so has part: feature:4979959-4980096:-1:exon
so has part: feature:4977496-4977833:-1:exon
so has part: feature:4972291-4972487:-1:exon
so has part: feature:4970089-4970429:-1:exon

XP_031297974.1
type: Protein
SIO_000068: ncbiprotein

position:4970089:-1
position: 4970089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4980096:-1
position: 4980096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4979959-4980096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4977496-4977833:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4972291-4972487:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4970089-4970429:-1:exon

NEIL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEIL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endonuclease 8-like 2
translation: MPEGPSVRKFHHLVSPFVGQQVVRTGGSSQKLNPASFESLWLQDTQVHGKKLFLRFDPDEQIVSPGNNPLPEPLQKSEQKEEAGHQQKVSEQSSLSPGGADALPSGDDGPQHLGEDTPAGGAERWLQVRFGLFGSVWVNEFSRAKKANKRGDWRDPIPRLVLHFGGGGFLAFYNCQMSWSSSPVVSPTSDILSEEFHRGQALEALGRDQPVCYTLLDQRYFSGLGNIIKNEVLYRAGIHPLSPGSRLDPPRLEALVDHVLAFSAAWLQGKFQGTQQHTQVYQKQQCPAGHQVMKEALGPPGGLQRLTWWCPQCQPRLSPDEPGAQAPSSQDLALKGP
SIO_010081: NEIL2
subclass of: SO_0000673
so part of: NEIL2
location: complement(join(4970089..4970429,4972291..4972487,4977496..4977833,4979959..4980096))
location: region:4970089-4980096:-1
so has part: feature:4979959-4980096:-1:exon
so has part: feature:4977496-4977833:-1:exon
so has part: feature:4972291-4972487:-1:exon
so has part: feature:4970089-4970429:-1:exon

XP_010993472.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4979959-4980096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4977496-4977833:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4972291-4972487:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4970089-4970429:-1:exon

NEIL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NEIL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: endonuclease 8-like 2
translation: MPEGPSVRKFHHLVSPFVGQQVVRTGGSSQKLNPASFESLWLQDTQVHGKKLFLRFDPDEQIVSPGNNPLPEPLQKSEQKEEAGHQQKVSEQSSLSPGGADALPSGDDGPQHLGEDTPAGGAERWLQVRFGLFGSVWVNEFSRAKKANKRGDWRDPIPRLVLHFGGGGFLAFYNCQMSWSSSPVVSPTSDILSEEFHRGQALEALGRDQPVCYTLLDQRYFSGLGNIIKNEVLYRAGIHPLSPGSRLDPPRLEALVDHVLAFSAAWLQGKFQGTQQHTQVYQKQQCPAGHQVMKEALGPPGGLQRLTWWCPQCQPRLSPDEPGAQAPSSQDLALKGP
SIO_010081: NEIL2
subclass of: SO_0000673
so part of: NEIL2
location: complement(join(4970089..4970429,4972291..4972487,4977496..4977833,4979959..4980096))
location: region:4970089-4980096:-1
so has part: feature:4979959-4980096:-1:exon
so has part: feature:4977496-4977833:-1:exon
so has part: feature:4972291-4972487:-1:exon
so has part: feature:4970089-4970429:-1:exon

XP_010993470.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4979959-4980096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4977496-4977833:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4972291-4972487:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4970089-4970429:-1:exon

GATA4
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GATA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4989985..5063155)
location: region:4989985-5063155:-1
so has part: feature:4989985-5063155:-1:exon
subclass of: SO_0000010

105101923
type: Gene
SIO_000068: ncbigene

position:4989985:-1
position: 4989985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5063155:-1
position: 5063155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4989985-5063155:-1:exon

GATA4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GATA4
product: GATA binding protein 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031442117.1
SIO_010081: GATA4
subclass of: SO_0000673
so part of: GATA4
location: complement(join(4989985..4991779,4992868..4993016,4994554..4994641,4998315..4998440,4999453..4999619,5033294..5034357,5063050..5063155))
location: region:4989985-5063155:-1
so has part: feature:5063050-5063155:-1:exon
so has part: feature:5033294-5034357:-1:exon
so has part: feature:4999453-4999619:-1:exon
so has part: feature:4998315-4998440:-1:exon
so has part: feature:4994554-4994641:-1:exon
so has part: feature:4992868-4993016:-1:exon
so has part: feature:4989985-4991779:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5063050-5063155:-1:exon

position:5063050:-1
position: 5063050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5033294-5034357:-1:exon

position:5033294:-1
position: 5033294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5034357:-1
position: 5034357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4999453-4999619:-1:exon

position:4999453:-1
position: 4999453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4999619:-1
position: 4999619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4998315-4998440:-1:exon

position:4998315:-1
position: 4998315
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4998440:-1
position: 4998440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4994554-4994641:-1:exon

position:4994554:-1
position: 4994554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4994641:-1
position: 4994641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4992868-4993016:-1:exon

position:4992868:-1
position: 4992868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4993016:-1
position: 4993016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4989985-4991779:-1:exon

position:4991779:-1
position: 4991779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GATA4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GATA4
product: GATA binding protein 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031442116.1
SIO_010081: GATA4
subclass of: SO_0000673
so part of: GATA4
location: complement(join(4989985..4991779,4992868..4993016,4994554..4994641,4998315..4998440,4999453..4999622,5033294..5034357,5037962..5038395))
location: region:4989985-5038395:-1
so has part: feature:5037962-5038395:-1:exon
so has part: feature:5033294-5034357:-1:exon
so has part: feature:4999453-4999622:-1:exon
so has part: feature:4998315-4998440:-1:exon
so has part: feature:4994554-4994641:-1:exon
so has part: feature:4992868-4993016:-1:exon
so has part: feature:4989985-4991779:-1:exon

position:5038395:-1
position: 5038395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5037962-5038395:-1:exon

position:5037962:-1
position: 5037962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5033294-5034357:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4999453-4999622:-1:exon

position:4999622:-1
position: 4999622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4998315-4998440:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4994554-4994641:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4992868-4993016:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4989985-4991779:-1:exon

GATA4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GATA4
product: GATA binding protein 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031442115.1
SIO_010081: GATA4
subclass of: SO_0000673
so part of: GATA4
location: complement(join(4989985..4991779,4992868..4993016,4994554..4994641,4998315..4998440,4999453..4999619,5033294..5034357,5037962..5038394))
location: region:4989985-5038394:-1
so has part: feature:5037962-5038394:-1:exon
so has part: feature:5033294-5034357:-1:exon
so has part: feature:4999453-4999619:-1:exon
so has part: feature:4998315-4998440:-1:exon
so has part: feature:4994554-4994641:-1:exon
so has part: feature:4992868-4993016:-1:exon
so has part: feature:4989985-4991779:-1:exon

position:5038394:-1
position: 5038394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5037962-5038394:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5033294-5034357:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4999453-4999619:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4998315-4998440:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4994554-4994641:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4992868-4993016:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4989985-4991779:-1:exon

GATA4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GATA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor GATA-4
translation: MFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKNLNKSKTPAGPSGSESLPPTTSASSNSSSAATSSSEEMRPIKTEPGLSSHYGHGSSMSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASSVSQSPQASSKQDPWNSLALADSHGDIITA
SIO_010081: GATA4
subclass of: SO_0000673
so part of: GATA4
location: complement(join(4991597..4991779,4992868..4993016,4994554..4994641,4998315..4998440,4999453..4999617))
location: region:4991597-4999617:-1
so has part: feature:4999453-4999617:-1:exon
so has part: feature:4998315-4998440:-1:exon
so has part: feature:4994554-4994641:-1:exon
so has part: feature:4992868-4993016:-1:exon
so has part: feature:4991597-4991779:-1:exon

XP_031297975.1
type: Protein
SIO_000068: ncbiprotein

position:4991597:-1
position: 4991597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4999617:-1
position: 4999617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4999453-4999617:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4998315-4998440:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4994554-4994641:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4992868-4993016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4991597-4991779:-1:exon

GATA4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GATA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor GATA-4
translation: MFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKNLNKSKTPAGPSGSESLPPTTSASSNSSSAATSSSEEMRPIKTEPGLSSHYGHGSSMSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASSVSQSPQASSKQDPWNSLALADSHGDIITA
SIO_010081: GATA4
subclass of: SO_0000673
so part of: GATA4
location: complement(join(4991597..4991779,4992868..4993016,4994554..4994641,4998315..4998440,4999453..4999617))
location: region:4991597-4999617:-1
so has part: feature:4999453-4999617:-1:exon
so has part: feature:4998315-4998440:-1:exon
so has part: feature:4994554-4994641:-1:exon
so has part: feature:4992868-4993016:-1:exon
so has part: feature:4991597-4991779:-1:exon

XP_031297976.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4999453-4999617:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4998315-4998440:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4994554-4994641:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4992868-4993016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4991597-4991779:-1:exon

GATA4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GATA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor GATA-4
translation: MFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKNLNKSKTPAGPSGSESLPPTTSASSNSSSAATSSSEEMRPIKTEPGLSSHYGHGSSMSQTFSVSAMSGHGPSIHPVLSALKLSPQGYASSVSQSPQASSKQDPWNSLALADSHGDIITA
SIO_010081: GATA4
subclass of: SO_0000673
so part of: GATA4
location: complement(join(4991597..4991779,4992868..4993016,4994554..4994641,4998315..4998440,4999453..4999617))
location: region:4991597-4999617:-1
so has part: feature:4999453-4999617:-1:exon
so has part: feature:4998315-4998440:-1:exon
so has part: feature:4994554-4994641:-1:exon
so has part: feature:4992868-4993016:-1:exon
so has part: feature:4991597-4991779:-1:exon

XP_031297977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4999453-4999617:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4998315-4998440:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4994554-4994641:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4992868-4993016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4991597-4991779:-1:exon

LOC105101931
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101931
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5075243..5075469
location: region:5075243-5075469:1
so has part: feature:5075243-5075469:1:exon

105101931
type: Gene
SIO_000068: ncbigene

position:5075243:1
position: 5075243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5075469:1
position: 5075469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5075243-5075469:1:exon

LOC105101931
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105101931
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105101931
subclass of: SO_0000673
so part of: LOC105101931
location: 5075243..5075469
location: region:5075243-5075469:1
so has part: feature:5075243-5075469:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5075243-5075469:1:exon

LOC116149860
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149860
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5093924..5097341)
location: region:5093924-5097341:-1
so has part: feature:5093924-5097341:-1:exon
subclass of: SO_0000011

116149860
type: Gene
SIO_000068: ncbigene

position:5093924:-1
position: 5093924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5097341:-1
position: 5097341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5093924-5097341:-1:exon

LOC116149860
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149860
product: uncharacterized LOC116149860
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133434.1
SIO_010081: LOC116149860
subclass of: SO_0000673
so part of: LOC116149860
location: complement(join(5093924..5094049,5095516..5095570,5097150..5097341))
location: region:5093924-5097341:-1
so has part: feature:5097150-5097341:-1:exon
so has part: feature:5095516-5095570:-1:exon
so has part: feature:5093924-5094049:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5097150-5097341:-1:exon

position:5097150:-1
position: 5097150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5095516-5095570:-1:exon

position:5095516:-1
position: 5095516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5095570:-1
position: 5095570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5093924-5094049:-1:exon

position:5094049:-1
position: 5094049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BLK
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: BLK
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5136881..5153388)
location: region:5136881-5153388:-1
so has part: feature:5136881-5153388:-1:exon
subclass of: SO_0000010

105101938
type: Gene
SIO_000068: ncbigene

position:5136881:-1
position: 5136881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5153388:-1
position: 5153388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5136881-5153388:-1:exon

BLK
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: BLK
product: BLK proto-oncogene, Src family tyrosine kinase
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031442118.1
SIO_010081: BLK
subclass of: SO_0000673
so part of: BLK
location: complement(join(5136881..5137701,5138370..5138501,5139734..5139884,5142566..5142642,5143037..5143216,5144309..5144461,5144924..5145070,5147268..5147371,5148433..5148531,5149394..5149487,5151017..5151075,5153287..5153388))
location: region:5136881-5153388:-1
so has part: feature:5153287-5153388:-1:exon
so has part: feature:5151017-5151075:-1:exon
so has part: feature:5149394-5149487:-1:exon
so has part: feature:5148433-5148531:-1:exon
so has part: feature:5147268-5147371:-1:exon
so has part: feature:5144924-5145070:-1:exon
so has part: feature:5144309-5144461:-1:exon
so has part: feature:5143037-5143216:-1:exon
so has part: feature:5142566-5142642:-1:exon
so has part: feature:5139734-5139884:-1:exon
so has part: feature:5138370-5138501:-1:exon
so has part: feature:5136881-5137701:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5153287-5153388:-1:exon

position:5153287:-1
position: 5153287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5151017-5151075:-1:exon

position:5151017:-1
position: 5151017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5151075:-1
position: 5151075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5149394-5149487:-1:exon

position:5149394:-1
position: 5149394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5149487:-1
position: 5149487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5148433-5148531:-1:exon

position:5148433:-1
position: 5148433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5148531:-1
position: 5148531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5147268-5147371:-1:exon

position:5147268:-1
position: 5147268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5147371:-1
position: 5147371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5144924-5145070:-1:exon

position:5144924:-1
position: 5144924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5145070:-1
position: 5145070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5144309-5144461:-1:exon

position:5144309:-1
position: 5144309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5144461:-1
position: 5144461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5143037-5143216:-1:exon

position:5143037:-1
position: 5143037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5143216:-1
position: 5143216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5142566-5142642:-1:exon

position:5142566:-1
position: 5142566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5142642:-1
position: 5142642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5139734-5139884:-1:exon

position:5139734:-1
position: 5139734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5139884:-1
position: 5139884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5138370-5138501:-1:exon

position:5138370:-1
position: 5138370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5138501:-1
position: 5138501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5136881-5137701:-1:exon

position:5137701:-1
position: 5137701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BLK
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: BLK
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: tyrosine-protein kinase Blk
translation: MGVVSSRRQVKEKVKGGWXPRKASTQGREPPPLPPQVVFNHLAPALPDTTHPDQEEHFVVALYDYNAVNDRDLQMLKGEKMQILKEDGDWWLAKSLITGREGYVPSNFVARVETLEVEKWFFRSICRRDAERQLLAPINKAGSFLIRESETSKGTFSLSVKDVTAQGEVIKHYKIRSLDEGGYYISPRSTFPTLQALVHHYSKKADGLCQRLSQPCVSLAPQNPWAQDEWEIPRQSLKLVRKLGSGQFGEVWMGYYKNNIKVAIKTLKEGTMSPEAFLGEANLMKTLQHERLVRLYAVVTKEPIYIVTEYMARGCLLDFLKTDEGGRLSLPRLIDMSAQIAEGMAYIERMNSIHRDLRAANILVSETLCCKIGDFGLARIIDSEYTAQEGAKFPIKWTAPEAIHFGVFTIKADVWSFGILLMEIVTYGRVPYPGMSNPEVIRNLERGYRMPRPDSCPPELYSGVIAECWRSRPEERPTFEFLQSVLEDFHTATEGQYELQP
SIO_010081: BLK
subclass of: SO_0000673
so part of: BLK
location: complement(join(5137496..5137701,5138370..5138501,5139734..5139884,5142566..5142642,5143037..5143216,5144309..5144461,5144924..5145070,5147268..5147371,5148433..5148531,5149394..5149487,5151017..5151075,5153287..5153388))
location: region:5137496-5153388:-1
so has part: feature:5153287-5153388:-1:exon
so has part: feature:5151017-5151075:-1:exon
so has part: feature:5149394-5149487:-1:exon
so has part: feature:5148433-5148531:-1:exon
so has part: feature:5147268-5147371:-1:exon
so has part: feature:5144924-5145070:-1:exon
so has part: feature:5144309-5144461:-1:exon
so has part: feature:5143037-5143216:-1:exon
so has part: feature:5142566-5142642:-1:exon
so has part: feature:5139734-5139884:-1:exon
so has part: feature:5138370-5138501:-1:exon
so has part: feature:5137496-5137701:-1:exon

XP_031297978.1
type: Protein
SIO_000068: ncbiprotein

position:5137496:-1
position: 5137496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5153287-5153388:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5151017-5151075:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5149394-5149487:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5148433-5148531:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5147268-5147371:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5144924-5145070:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5144309-5144461:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5143037-5143216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5142566-5142642:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5139734-5139884:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5138370-5138501:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5137496-5137701:-1:exon

FAM167A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FAM167A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5198030..5234559
location: region:5198030-5234559:1
so has part: feature:5198030-5234559:1:exon
subclass of: SO_0000010

105101946
type: Gene
SIO_000068: ncbigene

position:5198030:1
position: 5198030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5234559:1
position: 5234559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5198030-5234559:1:exon

FAM167A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FAM167A
product: family with sequence similarity 167 member A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_031442119.1
SIO_010081: FAM167A
subclass of: SO_0000673
so part of: FAM167A
location: join(5198030..5198401,5204126..5204224,5215066..5215688,5231614..5234559)
location: region:5198030-5234559:1
so has part: feature:5198030-5198401:1:exon
so has part: feature:5204126-5204224:1:exon
so has part: feature:5215066-5215688:1:exon
so has part: feature:5231614-5234559:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5198030-5198401:1:exon

position:5198401:1
position: 5198401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5204126-5204224:1:exon

position:5204126:1
position: 5204126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5204224:1
position: 5204224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5215066-5215688:1:exon

position:5215066:1
position: 5215066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5215688:1
position: 5215688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5231614-5234559:1:exon

position:5231614:1
position: 5231614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FAM167A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FAM167A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein FAM167A
translation: MSVPQIRVEEAESGEEGPAGAAPPPDDHLRSLKALTEKLRLETRRPSYLEWQARLEEQTWSFPRPAAEQGGCAEEEPLLPPRAPRQRPPPSGRASQAGGPQSAGKLEGFESIDEAIAWLRKELMEMRLQDQQLARQLMRLRSDIHKLKIEQTCDLHRRMLNDATYGLEERDELSDLFCDAPLASSFSLSAPLKLIGVTKMNINSRRFSLC
SIO_010081: FAM167A
subclass of: SO_0000673
so part of: FAM167A
location: join(5215320..5215688,5231614..5231877)
location: region:5215320-5231877:1
so has part: feature:5215320-5215688:1:exon
so has part: feature:5231614-5231877:1:exon

XP_031297979.1
type: Protein
SIO_000068: ncbiprotein

position:5215320:1
position: 5215320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5231877:1
position: 5231877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5215320-5215688:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5231614-5231877:1:exon

LOC105101953
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105101953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5257413..5274268)
location: region:5257413-5274268:-1
so has part: feature:5257413-5274268:-1:exon
subclass of: SO_0000010

105101953
type: Gene
SIO_000068: ncbigene

position:5257413:-1
position: 5257413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5274268:-1
position: 5274268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5257413-5274268:-1:exon

LOC105101953
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101953
product: L-threonine 3-dehydrogenase, mitochondrial, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_010995224.2
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5257413..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266682,5274113..5274268))
location: region:5257413-5274268:-1
so has part: feature:5274113-5274268:-1:exon
so has part: feature:5266483-5266682:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5257413-5258951:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5274113-5274268:-1:exon

position:5274113:-1
position: 5274113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5266483-5266682:-1:exon

position:5266483:-1
position: 5266483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5266682:-1
position: 5266682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5264857-5264899:-1:exon

position:5264857:-1
position: 5264857
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5264899:-1
position: 5264899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5264157-5264227:-1:exon

position:5264157:-1
position: 5264157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5264227:-1
position: 5264227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5262858-5263007:-1:exon

position:5262858:-1
position: 5262858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5263007:-1
position: 5263007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5262591-5262763:-1:exon

position:5262591:-1
position: 5262591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5262763:-1
position: 5262763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5261742-5261832:-1:exon

position:5261742:-1
position: 5261742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5261832:-1
position: 5261832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5259548-5259817:-1:exon

position:5259548:-1
position: 5259548
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5259817:-1
position: 5259817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5257413-5258951:-1:exon

position:5258951:-1
position: 5258951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105101953
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101953
product: L-threonine 3-dehydrogenase, mitochondrial, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031442120.1
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5257413..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266682,5267979..5268097,5268695..5268773,5274113..5274199))
location: region:5257413-5274199:-1
so has part: feature:5274113-5274199:-1:exon
so has part: feature:5268695-5268773:-1:exon
so has part: feature:5267979-5268097:-1:exon
so has part: feature:5266483-5266682:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5257413-5258951:-1:exon

position:5274199:-1
position: 5274199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5274113-5274199:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5268695-5268773:-1:exon

position:5268695:-1
position: 5268695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5268773:-1
position: 5268773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5267979-5268097:-1:exon

position:5267979:-1
position: 5267979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5268097:-1
position: 5268097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5266483-5266682:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5257413-5258951:-1:exon

LOC105101953
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101953
product: L-threonine 3-dehydrogenase, mitochondrial, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031442121.1
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5257413..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266682,5267979..5268097,5274113..5274190))
location: region:5257413-5274190:-1
so has part: feature:5274113-5274190:-1:exon
so has part: feature:5267979-5268097:-1:exon
so has part: feature:5266483-5266682:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5257413-5258951:-1:exon

position:5274190:-1
position: 5274190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5274113-5274190:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5267979-5268097:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5266483-5266682:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5257413-5258951:-1:exon

LOC105101953
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105101953
product: L-threonine 3-dehydrogenase, mitochondrial, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_031442122.1
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5257413..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266682,5273683..5273795,5274113..5274130))
location: region:5257413-5274130:-1
so has part: feature:5274113-5274130:-1:exon
so has part: feature:5273683-5273795:-1:exon
so has part: feature:5266483-5266682:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5257413-5258951:-1:exon

position:5274130:-1
position: 5274130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5274113-5274130:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5273683-5273795:-1:exon

position:5273683:-1
position: 5273683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5273795:-1
position: 5273795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5266483-5266682:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5257413-5258951:-1:exon

LOC105101953
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-threonine 3-dehydrogenase, mitochondrial
translation: MPVVRMLREVAGRMLQGPACGCRTPALPCRFLGTSPRQIPADANFHSTSFSEADPPRVLITGGLGQLGVGLASFLRKRFGKDNVILSDIRKPPEHVFLSGPFIYSDILDYKNLRETVVNNRVTWLFHYSALLSAVGEANVSLARAVNITGLHNVLDVAAEHGLRLFVPSTIGAFGPTSPRNPAPDLCIQRPRTIYGVSKVHAELMGEYYYYRYGLDFRCLRYPGIISADSQPGGGTTDYAVQIFHSAVKNGRFECNLEPGTRLPMMYIDDCLRATLEVMEAPAESLSMRTYNINAMSFTPAELAQEVLKHIPEFQITYNVDSVRQAIADSWPMNFDDSNARKDWGWKHDFDLPELVTTMLNFHGSESRIAQAN
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5258812..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266666))
location: region:5258812-5266666:-1
so has part: feature:5266483-5266666:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5258812-5258951:-1:exon

XP_031297980.1
type: Protein
SIO_000068: ncbiprotein

position:5258812:-1
position: 5258812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5266666:-1
position: 5266666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5266483-5266666:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5258812-5258951:-1:exon

LOC105101953
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-threonine 3-dehydrogenase, mitochondrial
translation: MPVVRMLREVAGRMLQGPACGCRTPALPCRFLGTSPRQIPADANFHSTSFSEADPPRVLITGGLGQLGVGLASFLRKRFGKDNVILSDIRKPPEHVFLSGPFIYSDILDYKNLRETVVNNRVTWLFHYSALLSAVGEANVSLARAVNITGLHNVLDVAAEHGLRLFVPSTIGAFGPTSPRNPAPDLCIQRPRTIYGVSKVHAELMGEYYYYRYGLDFRCLRYPGIISADSQPGGGTTDYAVQIFHSAVKNGRFECNLEPGTRLPMMYIDDCLRATLEVMEAPAESLSMRTYNINAMSFTPAELAQEVLKHIPEFQITYNVDSVRQAIADSWPMNFDDSNARKDWGWKHDFDLPELVTTMLNFHGSESRIAQAN
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5258812..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266666))
location: region:5258812-5266666:-1
so has part: feature:5266483-5266666:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5258812-5258951:-1:exon

XP_031297981.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5266483-5266666:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5258812-5258951:-1:exon

LOC105101953
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-threonine 3-dehydrogenase, mitochondrial
translation: MPVVRMLREVAGRMLQGPACGCRTPALPCRFLGTSPRQIPADANFHSTSFSEADPPRVLITGGLGQLGVGLASFLRKRFGKDNVILSDIRKPPEHVFLSGPFIYSDILDYKNLRETVVNNRVTWLFHYSALLSAVGEANVSLARAVNITGLHNVLDVAAEHGLRLFVPSTIGAFGPTSPRNPAPDLCIQRPRTIYGVSKVHAELMGEYYYYRYGLDFRCLRYPGIISADSQPGGGTTDYAVQIFHSAVKNGRFECNLEPGTRLPMMYIDDCLRATLEVMEAPAESLSMRTYNINAMSFTPAELAQEVLKHIPEFQITYNVDSVRQAIADSWPMNFDDSNARKDWGWKHDFDLPELVTTMLNFHGSESRIAQAN
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5258812..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266666))
location: region:5258812-5266666:-1
so has part: feature:5266483-5266666:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5258812-5258951:-1:exon

XP_031297982.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5266483-5266666:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5258812-5258951:-1:exon

LOC105101953
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105101953
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: L-threonine 3-dehydrogenase, mitochondrial
translation: MPVVRMLREVAGRMLQGPACGCRTPALPCRFLGTSPRQIPADANFHSTSFSEADPPRVLITGGLGQLGVGLASFLRKRFGKDNVILSDIRKPPEHVFLSGPFIYSDILDYKNLRETVVNNRVTWLFHYSALLSAVGEANVSLARAVNITGLHNVLDVAAEHGLRLFVPSTIGAFGPTSPRNPAPDLCIQRPRTIYGVSKVHAELMGEYYYYRYGLDFRCLRYPGIISADSQPGGGTTDYAVQIFHSAVKNGRFECNLEPGTRLPMMYIDDCLRATLEVMEAPAESLSMRTYNINAMSFTPAELAQEVLKHIPEFQITYNVDSVRQAIADSWPMNFDDSNARKDWGWKHDFDLPELVTTMLNFHGSESRIAQAN
SIO_010081: LOC105101953
subclass of: SO_0000673
so part of: LOC105101953
location: complement(join(5258812..5258951,5259548..5259817,5261742..5261832,5262591..5262763,5262858..5263007,5264157..5264227,5264857..5264899,5266483..5266666))
location: region:5258812-5266666:-1
so has part: feature:5266483-5266666:-1:exon
so has part: feature:5264857-5264899:-1:exon
so has part: feature:5264157-5264227:-1:exon
so has part: feature:5262858-5263007:-1:exon
so has part: feature:5262591-5262763:-1:exon
so has part: feature:5261742-5261832:-1:exon
so has part: feature:5259548-5259817:-1:exon
so has part: feature:5258812-5258951:-1:exon

XP_010993526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5266483-5266666:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5264857-5264899:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5264157-5264227:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5262858-5263007:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5262591-5262763:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5261742-5261832:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5259548-5259817:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5258812-5258951:-1:exon

LOC105102947
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105102947
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5284303..5284719
location: region:5284303-5284719:1
so has part: feature:5284303-5284719:1:exon

105102947
type: Gene
SIO_000068: ncbigene

position:5284303:1
position: 5284303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5284719:1
position: 5284719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5284303-5284719:1:exon

LOC105102947
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105102947
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 82% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105102947
subclass of: SO_0000673
so part of: LOC105102947
location: 5284303..5284719
location: region:5284303-5284719:1
so has part: feature:5284303-5284719:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5284303-5284719:1:exon

MTMR9
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MTMR9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5290123..5321374)
location: region:5290123-5321374:-1
so has part: feature:5290123-5321374:-1:exon
subclass of: SO_0000010

105101967
type: Gene
SIO_000068: ncbigene

position:5290123:-1
position: 5290123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5321374:-1
position: 5321374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5290123-5321374:-1:exon

MTMR9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MTMR9
product: myotubularin related protein 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_010995237.2
SIO_010081: MTMR9
subclass of: SO_0000673
so part of: MTMR9
location: complement(join(5290123..5294409,5297584..5297735,5300729..5300949,5302831..5302972,5304928..5305089,5305911..5306128,5307675..5307848,5309889..5310014,5314033..5314141,5320740..5321374))
location: region:5290123-5321374:-1
so has part: feature:5320740-5321374:-1:exon
so has part: feature:5314033-5314141:-1:exon
so has part: feature:5309889-5310014:-1:exon
so has part: feature:5307675-5307848:-1:exon
so has part: feature:5305911-5306128:-1:exon
so has part: feature:5304928-5305089:-1:exon
so has part: feature:5302831-5302972:-1:exon
so has part: feature:5300729-5300949:-1:exon
so has part: feature:5297584-5297735:-1:exon
so has part: feature:5290123-5294409:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5320740-5321374:-1:exon

position:5320740:-1
position: 5320740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5314033-5314141:-1:exon

position:5314033:-1
position: 5314033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5314141:-1
position: 5314141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5309889-5310014:-1:exon

position:5309889:-1
position: 5309889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5310014:-1
position: 5310014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5307675-5307848:-1:exon

position:5307675:-1
position: 5307675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5307848:-1
position: 5307848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5305911-5306128:-1:exon

position:5305911:-1
position: 5305911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5306128:-1
position: 5306128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5304928-5305089:-1:exon

position:5304928:-1
position: 5304928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5305089:-1
position: 5305089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5302831-5302972:-1:exon

position:5302831:-1
position: 5302831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5302972:-1
position: 5302972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5300729-5300949:-1:exon

position:5300729:-1
position: 5300729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5300949:-1
position: 5300949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5297584-5297735:-1:exon

position:5297584:-1
position: 5297584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5297735:-1
position: 5297735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5290123-5294409:-1:exon

position:5294409:-1
position: 5294409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MTMR9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MTMR9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myotubularin-related protein 9
translation: MEFAELIKTPRVDNVVLHRPFYPAVEGTLCLTGHHLILSSRQDNTEELWLLHSNIDAIDKRFVGPLGTIIIKCKDFRIIQLDIPGMEECLNIASSIEALSTLDSITLMYPFFYRPMFDVIEDGWHSFLPEQEFELYSSATSEWRLSYVNKEFAVCPSYPPIVIVPRAIEDEALRKVAAFRHGGRFPVLSYYHKKNGMVIMRSGQPLTGTNGRRCKEDEKLINATLRAGKRGYIIDTRPLNVAQQARAKGGGFEQEAHYPQWRRIHKSIERYHILQESLVKLVEACNDQTHNMDRWLSKLEASNWLTHIKEILTTACLVAQCLDREGASILIHGTEGTDSTLQVTSLAQIILEPRSRTIRGFEALIEREWLQAGHPFQQRCAQSAYCNSRQKWESPVFLLFLDCVWQILRQFPCSFEFNENFLIMLFEHAYASQFGTFLGNNESERCKLKLQQKTMSLWSWVNRPSELSKFTNPLFEANNLVIWPSVAPQSLQLWEGIFLRWNRSSRYLDEAYEEMVNIIEYNRALQAKVNILRRQLAELETEDGMQQSP
SIO_010081: MTMR9
subclass of: SO_0000673
so part of: MTMR9
location: complement(join(5294246..5294409,5297584..5297735,5300729..5300949,5302831..5302972,5304928..5305089,5305911..5306128,5307675..5307848,5309889..5310014,5314033..5314141,5320740..5320921))
location: region:5294246-5320921:-1
so has part: feature:5320740-5320921:-1:exon
so has part: feature:5314033-5314141:-1:exon
so has part: feature:5309889-5310014:-1:exon
so has part: feature:5307675-5307848:-1:exon
so has part: feature:5305911-5306128:-1:exon
so has part: feature:5304928-5305089:-1:exon
so has part: feature:5302831-5302972:-1:exon
so has part: feature:5300729-5300949:-1:exon
so has part: feature:5297584-5297735:-1:exon
so has part: feature:5294246-5294409:-1:exon

XP_010993539.2
type: Protein
SIO_000068: ncbiprotein

position:5294246:-1
position: 5294246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5320921:-1
position: 5320921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5320740-5320921:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5314033-5314141:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5309889-5310014:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5307675-5307848:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5305911-5306128:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5304928-5305089:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5302831-5302972:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5300729-5300949:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5297584-5297735:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5294246-5294409:-1:exon

XKR6
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: XKR6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5320920..5589671
location: region:5320920-5589671:1
so has part: feature:5320920-5589671:1:exon
subclass of: SO_0000010

105101982
type: Gene
SIO_000068: ncbigene

position:5320920:1
position: 5320920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5589671:1
position: 5589671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5320920-5589671:1:exon

XKR6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: XKR6
product: XK related 6
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031442049.1
SIO_010081: XKR6
subclass of: SO_0000673
so part of: XKR6
location: join(5320920..5320973,5321179..5321268,5321670..5321746,5336048..5336152,5347589..5347673,5364642..5365593,5564392..5564588,5586890..5589671)
location: region:5320920-5589671:1
so has part: feature:5320920-5320973:1:exon
so has part: feature:5321179-5321268:1:exon
so has part: feature:5321670-5321746:1:exon
so has part: feature:5336048-5336152:1:exon
so has part: feature:5347589-5347673:1:exon
so has part: feature:5364642-5365593:1:exon
so has part: feature:5564392-5564588:1:exon
so has part: feature:5586890-5589671:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5320920-5320973:1:exon

position:5320973:1
position: 5320973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5321179-5321268:1:exon

position:5321179:1
position: 5321179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5321268:1
position: 5321268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5321670-5321746:1:exon

position:5321670:1
position: 5321670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5321746:1
position: 5321746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5336048-5336152:1:exon

position:5336048:1
position: 5336048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5336152:1
position: 5336152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5347589-5347673:1:exon

position:5347589:1
position: 5347589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5347673:1
position: 5347673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5364642-5365593:1:exon

position:5364642:1
position: 5364642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5365593:1
position: 5365593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5564392-5564588:1:exon

position:5564392:1
position: 5564392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5564588:1
position: 5564588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5586890-5589671:1:exon

position:5586890:1
position: 5586890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

XKR6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: XKR6
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: XK-related protein 6
translation: MFSSGRRQGTAEPRRYETAQDSGSGDALRQAQQPQPPPGTRPRVGRLKRFSPVHREEMASGIESVTVTPEKRQVALAFNHQGLTHHRLRISEPAGSRKVYPKLLFQKHRDHTGGYESPRENEGSAPKTPGHKTQSEPGWGAAGAVRLGGSPGSDANYPEAEGVPWPTPPSFVCSPAPLPPPFLSIRFPPLPFPAFFPPHPSLPPNLRSWEESQDGGESDGGGVGVGFAQLHNLDEAVGSGGEEDGEPGGGGCGGGGDGSEPGXSSSLHICHCCNTSSLLGCRSACLALLLGRKPRRSAAAADGGDQPLQPPADAARPTPSAERPQPPQXERPWLDCLWIVLALLVFFGDVGTDLWLALDYYRKGDYGYFGLTLFFVLVPSLLVQSLSFRWFVQDYTGGGLGAVEGLTSRGPPMMGATYGHGVGVSATPGAQRLCRLSVWIWQSVIHLLQMGQVWRYIRTMYLGIQSQRQKEHQRRFYWAMMYEYADVNMLRLLETFLESAPQLVLQLCIMIQKSRAETLPCVSSVTSLMSLAWVLASYHKLLRDSRDDKKSMSYRGALIQLFWRLFTISSRVISFALFASIFQLYFGIFVVVHWCAMAFWIIHGGTDFCMSKWEEILFNMVVGIVYIFCWFNVKEGRTRYRMFAYYTIVLTENATLTFLWYFYRNPETTDFYAVPALCCVFLSFVAGIALMLLYYGVLHPMGPRVKILASSCCAELLWGIPLPPDVEPMAPQTPGYRGTQVTPTRAVTEQQEDLTADTCLPVFQVRPMGPPTPTGRPYPPEGPLIKIDMPRKRYPAWDAHFVDRRLRRTINILQYVTPTAVGIRYRDGPLLYELLQYESSL
SIO_010081: XKR6
subclass of: SO_0000673
so part of: XKR6
location: join(5320920..5320973,5321179..5321268,5321670..5321746,5336048..5336152,5347589..5347673,5364642..5365593,5564392..5564588,5586890..5587854)
location: region:5320920-5587854:1
so has part: feature:5320920-5320973:1:exon
so has part: feature:5321179-5321268:1:exon
so has part: feature:5321670-5321746:1:exon
so has part: feature:5336048-5336152:1:exon
so has part: feature:5347589-5347673:1:exon
so has part: feature:5364642-5365593:1:exon
so has part: feature:5564392-5564588:1:exon
so has part: feature:5586890-5587854:1:exon

XP_031297909.1
type: Protein
SIO_000068: ncbiprotein