Camelus dromedarius isolate Drom800 breed African chromosome 29, CamDro3, whole genome shotgun sequence.
type: Entry
definition: Camelus dromedarius isolate Drom800 breed African chromosome 29, CamDro3, whole genome shotgun sequence.
sequence version: NC_044539.1
sequence date: 2019-10-23
sequence: sequence
division: CON
label: NC_044539.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA565028
dblink: SAMN03252735
keyword: WGS
keyword: RefSeq
source: Camelus dromedarius (Arabian camel)
organism: Camelus dromedarius
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Tylopoda; Camelidae; Camelus.
reference: 1
references: 30972949
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM016655.2.\nAssembly name: CamDro3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vetmeduni Vienna on\n2019/10/07. The original whole-genome shotgun project has the\naccession JWIN00000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vetmeduni Vienna\nAssembly Date :: FEB-2019\nAssembly Method :: ABySS v. 1.3.6; HiRise v. MAY-2017;\n PBJelly v. 15.8.24; Pilon v. 1.22; ABySS\n Sealer v. 2.0.2; HiRise v. MAY-2018;\n PBJelly v. 15.8.24; BBMAP-CallVariants v.\n 38.12; ABySS Sealer v. 2.1.0\nAssembly Name :: CamDro3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 65.0x\nSequencing Technology :: Illumina HiSeq; Dovetail Hi-C and\n Chicago; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Camelus dromedarius Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 25940089
topology: linear
so has quality: SO_0000987
location: 1..25940089
location: region:1-25940089:1
RO_0002162: 9838

NC_044539
type: RefSeq
SIO_000068: refseq

PRJNA565028
type: BioProject
SIO_000068: bioproject

SAMN03252735
type: BioSample
SIO_000068: biosample

1
title: Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary
author: Elbers, J.P.
author: Rogers, M.F.
author: Perelman, P.L.
author: Proskuryakova, A.A.
author: Serdyukova, N.A.
author: Johnson, W.E.
author: Horin, P.
author: Corander, J.
author: Murphy, D.
author: Burger, P.A.
journal: Mol Ecol Resour
volume: 19
issue: 4
pages: 1015-1026
year: 2019
pubmed: 30972949

30972949
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25940089:1
position: 25940089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25940089:1:source
so part of: sequence
organism: Camelus dromedarius
mol type: genomic DNA
isolate: Drom800
isolation source: isolated from an animal called Varis
chromosome: 29
sex: female
tissue type: blood
dev stage: adult
country: Austria: Eithental
collection date: 13-Jan-2013
collected by: Pamela Burger
breed: African

9838
type: Taxonomy
SIO_000068: taxonomy

TRNAS-GCU
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAS-GCU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 679..750
location: region:679-750:1
so has part: feature:679-750:1:exon
subclass of: SO_0000663

116149696
type: Gene
SIO_000068: ncbigene

position:679:1
position: 679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:750:1
position: 750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:679-750:1:exon

TRNAS-GCU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAS-GCU
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:711..713,aa:Ser,seq:gct)
SIO_010081: TRNAS-GCU
subclass of: SO_0000673
so part of: TRNAS-GCU
location: 679..750
location: region:679-750:1
so has part: feature:679-750:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:679-750:1:exon

LOC116147119
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116147119
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 65857..71475
location: region:65857-71475:1
so has part: feature:65857-71475:1:exon
subclass of: SO_0000011

116147119
type: Gene
SIO_000068: ncbigene

position:65857:1
position: 65857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:71475:1
position: 71475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:65857-71475:1:exon

LOC116147119
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116147119
product: uncharacterized LOC116147119
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_004133216.1
SIO_010081: LOC116147119
subclass of: SO_0000673
so part of: LOC116147119
location: join(65857..65940,68225..68303,70340..71475)
location: region:65857-71475:1
so has part: feature:65857-65940:1:exon
so has part: feature:68225-68303:1:exon
so has part: feature:70340-71475:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:65857-65940:1:exon

position:65940:1
position: 65940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:68225-68303:1:exon

position:68225:1
position: 68225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68303:1
position: 68303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:70340-71475:1:exon

position:70340:1
position: 70340
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149598
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149598
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <71546..118953
location: region:71546-118953:1
so has part: feature:71546-118953:1:exon
subclass of: SO_0000010

116149598
type: Gene
SIO_000068: ncbigene

position:71546:1
position: 71546
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:118953:1
position: 118953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71546-118953:1:exon

LOC116149598
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149598
product: UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_031441374.1
SIO_010081: LOC116149598
subclass of: SO_0000673
so part of: LOC116149598
location: join(<71546..71643,106960..107085,107669..107828,108415..108471,117109..117239,118377..118953)
location: region:71546-118953:1
so has part: feature:71546-71643:1:exon
so has part: feature:106960-107085:1:exon
so has part: feature:107669-107828:1:exon
so has part: feature:108415-108471:1:exon
so has part: feature:117109-117239:1:exon
so has part: feature:118377-118953:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:71546-71643:1:exon

position:71643:1
position: 71643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:106960-107085:1:exon

position:106960:1
position: 106960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107085:1
position: 107085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:107669-107828:1:exon

position:107669:1
position: 107669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:107828:1
position: 107828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:108415-108471:1:exon

position:108415:1
position: 108415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:108471:1
position: 108471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:117109-117239:1:exon

position:117109:1
position: 117109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:117239:1
position: 117239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:118377-118953:1:exon

position:118377:1
position: 118377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149598
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149598
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2-like
translation: SLGRGRLHGDIVFVDIIDTYRNVPAKLLNFYQWTVETTDFDLLLKTDDDCYIDLEAVFNRIALKNLDGPNFWWGNFRLNWAVDRTGKWQELEYPSPVYPAFACGSGYVISKDIVHWLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDGLWLCEKTCEPGMLSSPQYSLWELAALWELKESGRDPCQCAARASHKASDSTAHKPFISQEPSHHERPNL
SIO_010081: LOC116149598
subclass of: SO_0000673
so part of: LOC116149598
location: join(<71546..71643,106960..107085,107669..107828,108415..108471,117109..117239,118377..118461)
location: region:71546-118461:1
so has part: feature:71546-71643:1:exon
so has part: feature:106960-107085:1:exon
so has part: feature:107669-107828:1:exon
so has part: feature:108415-108471:1:exon
so has part: feature:117109-117239:1:exon
so has part: feature:118377-118461:1:exon

XP_031297234.1
type: Protein
SIO_000068: ncbiprotein

position:118461:1
position: 118461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71546-71643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:106960-107085:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:107669-107828:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:108415-108471:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:117109-117239:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:118377-118461:1:exon

LOC105088828
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088828
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 75439..94001
location: region:75439-94001:1
so has part: feature:75439-94001:1:exon

105088828
type: Gene
SIO_000068: ncbigene

position:75439:1
position: 75439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:94001:1
position: 94001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75439-94001:1:exon

LOC105088828
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: LOC105088828
product: uncharacterized LOC105088828, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_004133214.1
SIO_010081: LOC105088828
so part of: LOC105088828
location: join(75439..75484,76769..76770,80083..80175,90888..90997,92506..92589,93292..94001)
location: region:75439-94001:1
so has part: feature:75439-75484:1:exon
so has part: feature:76769-76770:1:exon
so has part: feature:80083-80175:1:exon
so has part: feature:90888-90997:1:exon
so has part: feature:92506-92589:1:exon
so has part: feature:93292-94001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75439-75484:1:exon

position:75484:1
position: 75484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:76769-76770:1:exon

position:76769:1
position: 76769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:76770:1
position: 76770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:80083-80175:1:exon

position:80083:1
position: 80083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:80175:1
position: 80175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:90888-90997:1:exon

position:90888:1
position: 90888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:90997:1
position: 90997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:92506-92589:1:exon

position:92506:1
position: 92506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:92589:1
position: 92589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:93292-94001:1:exon

position:93292:1
position: 93292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088828
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: LOC105088828
product: uncharacterized LOC105088828, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XR_004133213.1
SIO_010081: LOC105088828
so part of: LOC105088828
location: join(75439..75484,76769..76770,80083..80175,90888..90997,93292..94001)
location: region:75439-94001:1
so has part: feature:75439-75484:1:exon
so has part: feature:76769-76770:1:exon
so has part: feature:80083-80175:1:exon
so has part: feature:90888-90997:1:exon
so has part: feature:93292-94001:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:75439-75484:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:76769-76770:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80083-80175:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90888-90997:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:93292-94001:1:exon

LOC105088828
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: LOC105088828
product: uncharacterized LOC105088828, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133215.1
SIO_010081: LOC105088828
so part of: LOC105088828
location: join(75439..75484,76769..76770,80083..80175,90888..90997,92474..93285)
location: region:75439-93285:1
so has part: feature:75439-75484:1:exon
so has part: feature:76769-76770:1:exon
so has part: feature:80083-80175:1:exon
so has part: feature:90888-90997:1:exon
so has part: feature:92474-93285:1:exon

position:93285:1
position: 93285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:75439-75484:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:76769-76770:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:80083-80175:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:90888-90997:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:92474-93285:1:exon

position:92474:1
position: 92474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116147087
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116147087
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(103022..105072)
location: region:103022-105072:-1
so has part: feature:103022-105072:-1:exon
subclass of: SO_0000011

116147087
type: Gene
SIO_000068: ncbigene

position:103022:-1
position: 103022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:105072:-1
position: 105072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:103022-105072:-1:exon

LOC116147087
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116147087
product: uncharacterized LOC116147087
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XR_004133212.1
SIO_010081: LOC116147087
subclass of: SO_0000673
so part of: LOC116147087
location: complement(join(103022..103360,104959..105072))
location: region:103022-105072:-1
so has part: feature:104959-105072:-1:exon
so has part: feature:103022-103360:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:104959-105072:-1:exon

position:104959:-1
position: 104959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:103022-103360:-1:exon

position:103360:-1
position: 103360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105105191
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105105191
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(118286..129207)
location: region:118286-129207:-1
so has part: feature:118286-129207:-1:exon
subclass of: SO_0000010

105105191
type: Gene
SIO_000068: ncbigene

position:118286:-1
position: 118286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129207:-1
position: 129207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118286-129207:-1:exon

LOC105105191
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105105191
product: tubulin-specific chaperone E-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441375.1
SIO_010081: LOC105105191
subclass of: SO_0000673
so part of: LOC105105191
location: complement(join(118286..118571,118671..118831,121475..121534,122046..122114,123332..123485,123881..124033,124351..124415,124504..124568,125071..125166,126322..126398,127487..127589,128875..128974,129195..129207))
location: region:118286-129207:-1
so has part: feature:129195-129207:-1:exon
so has part: feature:128875-128974:-1:exon
so has part: feature:127487-127589:-1:exon
so has part: feature:126322-126398:-1:exon
so has part: feature:125071-125166:-1:exon
so has part: feature:124504-124568:-1:exon
so has part: feature:124351-124415:-1:exon
so has part: feature:123881-124033:-1:exon
so has part: feature:123332-123485:-1:exon
so has part: feature:122046-122114:-1:exon
so has part: feature:121475-121534:-1:exon
so has part: feature:118671-118831:-1:exon
so has part: feature:118286-118571:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:129195-129207:-1:exon

position:129195:-1
position: 129195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:128875-128974:-1:exon

position:128875:-1
position: 128875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128974:-1
position: 128974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:127487-127589:-1:exon

position:127487:-1
position: 127487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127589:-1
position: 127589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:126322-126398:-1:exon

position:126322:-1
position: 126322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126398:-1
position: 126398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:125071-125166:-1:exon

position:125071:-1
position: 125071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125166:-1
position: 125166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:124504-124568:-1:exon

position:124504:-1
position: 124504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124568:-1
position: 124568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:124351-124415:-1:exon

position:124351:-1
position: 124351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124415:-1
position: 124415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:123881-124033:-1:exon

position:123881:-1
position: 123881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124033:-1
position: 124033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:123332-123485:-1:exon

position:123332:-1
position: 123332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:123485:-1
position: 123485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:122046-122114:-1:exon

position:122046:-1
position: 122046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122114:-1
position: 122114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:121475-121534:-1:exon

position:121475:-1
position: 121475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:121534:-1
position: 121534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:118671-118831:-1:exon

position:118671:-1
position: 118671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118831:-1
position: 118831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:118286-118571:-1:exon

position:118571:-1
position: 118571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105105191
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105105191
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tubulin-specific chaperone E-like
translation: MSVPNIRSIDLSKNLLSSWDEVVAIADQLRRLEVLNLSENKLTFPSGSPTPSRTFSALKELVLNRTGITWAQVLRCASGWPVLEKLYLESNDIVISERPVDVLQTVKLLDLSSNQLIDENQLFLIAHLPRLEQLILSDIGISSIHFPDAGIGCKTSMFPSLQYLVLNDNQMSHWSVIRELDKLSSLHALSCTRNPLTEGGRDPQTTRQLIIARVGQLRTLNKCAVEPEERHGAELHYWKAFGTEWKAAGGHQDPDWHLPSADFLAPHPRYQLLCHKYGAPEDAELKMQQPFQLKNQLRTLKIKCPNELDQEVIEKPLPESMTIQKVKGFLLCLLKVPVAQLLLSYESPKVAQQNMKSVSPRRAVLLNATSAQMPGREIELENDQQSLQFYSVENGDCLLVRW
SIO_010081: LOC105105191
subclass of: SO_0000673
so part of: LOC105105191
location: complement(join(118479..118571,118671..118831,121475..121534,122046..122114,123332..123485,123881..124033,124351..124415,124504..124568,125071..125166,126322..126398,127487..127589,128875..128974,129195..129207))
location: region:118479-129207:-1
so has part: feature:129195-129207:-1:exon
so has part: feature:128875-128974:-1:exon
so has part: feature:127487-127589:-1:exon
so has part: feature:126322-126398:-1:exon
so has part: feature:125071-125166:-1:exon
so has part: feature:124504-124568:-1:exon
so has part: feature:124351-124415:-1:exon
so has part: feature:123881-124033:-1:exon
so has part: feature:123332-123485:-1:exon
so has part: feature:122046-122114:-1:exon
so has part: feature:121475-121534:-1:exon
so has part: feature:118671-118831:-1:exon
so has part: feature:118479-118571:-1:exon

XP_031297235.1
type: Protein
SIO_000068: ncbiprotein

position:118479:-1
position: 118479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:129195-129207:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:128875-128974:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:127487-127589:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:126322-126398:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:125071-125166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:124504-124568:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:124351-124415:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:123881-124033:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:123332-123485:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:122046-122114:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:121475-121534:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:118671-118831:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:118479-118571:-1:exon

LOC116149616
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149616
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(131795..133804)
location: region:131795-133804:-1
so has part: feature:131795-133804:-1:exon

116149616
type: Gene
SIO_000068: ncbigene

position:131795:-1
position: 131795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133804:-1
position: 133804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131795-133804:-1:exon

LOC116149616
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149616
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149616
subclass of: SO_0000673
so part of: LOC116149616
location: complement(131795..133804)
location: region:131795-133804:-1
so has part: feature:131795-133804:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:131795-133804:-1:exon

LOC116149617
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149617
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(146039..172058)
location: region:146039-172058:-1
so has part: feature:146039-172058:-1:exon
subclass of: SO_0000011

116149617
type: Gene
SIO_000068: ncbigene

position:146039:-1
position: 146039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172058:-1
position: 172058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146039-172058:-1:exon

LOC116149617
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149617
product: uncharacterized LOC116149617
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_004133217.1
SIO_010081: LOC116149617
subclass of: SO_0000673
so part of: LOC116149617
location: complement(join(146039..146803,156035..156117,171616..172058))
location: region:146039-172058:-1
so has part: feature:171616-172058:-1:exon
so has part: feature:156035-156117:-1:exon
so has part: feature:146039-146803:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:171616-172058:-1:exon

position:171616:-1
position: 171616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:156035-156117:-1:exon

position:156035:-1
position: 156035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156117:-1
position: 156117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:146039-146803:-1:exon

position:146803:-1
position: 146803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105096310
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105096310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 224114..224896
location: region:224114-224896:1
so has part: feature:224114-224896:1:exon

105096310
type: Gene
SIO_000068: ncbigene

position:224114:1
position: 224114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:224896:1
position: 224896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:224114-224896:1:exon

LOC105096310
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105096310
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105096310
subclass of: SO_0000673
so part of: LOC105096310
location: 224114..224896
location: region:224114-224896:1
so has part: feature:224114-224896:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:224114-224896:1:exon

LOC116149599
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149599
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(227117..229622)
location: region:227117-229622:-1
so has part: feature:227117-229622:-1:exon
subclass of: SO_0000010

116149599
type: Gene
SIO_000068: ncbigene

position:227117:-1
position: 227117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229622:-1
position: 229622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:227117-229622:-1:exon

LOC116149599
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149599
product: geranylgeranyl pyrophosphate synthase-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441376.1
SIO_010081: LOC116149599
subclass of: SO_0000673
so part of: LOC116149599
location: complement(join(227117..227427,228696..229188,229437..229622))
location: region:227117-229622:-1
so has part: feature:229437-229622:-1:exon
so has part: feature:228696-229188:-1:exon
so has part: feature:227117-227427:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:229437-229622:-1:exon

position:229437:-1
position: 229437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:228696-229188:-1:exon

position:228696:-1
position: 228696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:229188:-1
position: 229188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:227117-227427:-1:exon

position:227427:-1
position: 227427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149599
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149599
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: geranylgeranyl pyrophosphate synthase-like
translation: MLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSDINSANYMYFLGLEKVLTLDHPDAVKLFTRQLLDLHQGQGLDIYWRDNYTCPTEEEYRAMVLQKTGGLFGLAVGHMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKRSPSPRPTSTADPKAQFSADPKLTHPDWRNSWQYLFSVNKKDPEWRIHLSLSQNLKTKGPLKPGAAEGHACQHMEETCLKLRPKRKAELIQLCAKPFTSPVK
SIO_010081: LOC116149599
subclass of: SO_0000673
so part of: LOC116149599
location: complement(join(227117..227427,228696..229167))
location: region:227117-229167:-1
so has part: feature:228696-229167:-1:exon
so has part: feature:227117-227427:-1:exon

XP_031297236.1
type: Protein
SIO_000068: ncbiprotein

position:229167:-1
position: 229167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:228696-229167:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:227117-227427:-1:exon

LOC116149618
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149618
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(319203..320674)
location: region:319203-320674:-1
so has part: feature:319203-320674:-1:exon
subclass of: SO_0000010

116149618
type: Gene
SIO_000068: ncbigene

position:319203:-1
position: 319203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320674:-1
position: 320674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:319203-320674:-1:exon

LOC116149618
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149618
product: TLE family member 5-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031441389.1
SIO_010081: LOC116149618
subclass of: SO_0000673
so part of: LOC116149618
location: complement(join(319203..320139,320221..320674))
location: region:319203-320674:-1
so has part: feature:320221-320674:-1:exon
so has part: feature:319203-320139:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:320221-320674:-1:exon

position:320221:-1
position: 320221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:319203-320139:-1:exon

position:320139:-1
position: 320139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149618
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149618
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: TLE family member 5-like
translation: MMFRQSRHSGSLHLPQQLKFTPSDSCDRIKDEFQLMLAQYHSLKLVRDKLASEKXEVQRHYVMCYDMSYGLNIEMHKQAVIVKRLNWICAQVLPYLSQEHQQQVLGAIERAKQVTAPELNSIIRQQLQAHQLSQLQALALPLTLLPVGLQPPSLLAVRAGTGLLSLSALGSQAHLSKEDKNEHEGDTHQEDDGEKSD
SIO_010081: LOC116149618
subclass of: SO_0000673
so part of: LOC116149618
location: complement(join(319918..320139,320221..320591))
location: region:319918-320591:-1
so has part: feature:320221-320591:-1:exon
so has part: feature:319918-320139:-1:exon

XP_031297249.1
type: Protein
SIO_000068: ncbiprotein

position:319918:-1
position: 319918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:320591:-1
position: 320591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:320221-320591:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:319918-320139:-1:exon

LOC105087536
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087536
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(369362..370133)
location: region:369362-370133:-1
so has part: feature:369362-370133:-1:exon

105087536
type: Gene
SIO_000068: ncbigene

position:369362:-1
position: 369362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:370133:-1
position: 370133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369362-370133:-1:exon

LOC105087536
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087536
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087536
subclass of: SO_0000673
so part of: LOC105087536
location: complement(369362..370133)
location: region:369362-370133:-1
so has part: feature:369362-370133:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:369362-370133:-1:exon

LOC105087537
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087537
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 510109..510338
location: region:510109-510338:1
so has part: feature:510109-510338:1:exon

105087537
type: Gene
SIO_000068: ncbigene

position:510109:1
position: 510109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510338:1
position: 510338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:510109-510338:1:exon

LOC105087537
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087537
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 50% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087537
subclass of: SO_0000673
so part of: LOC105087537
location: 510109..510338
location: region:510109-510338:1
so has part: feature:510109-510338:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:510109-510338:1:exon

LOC105087545
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087545
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 549169..549911
location: region:549169-549911:1
so has part: feature:549169-549911:1:exon

105087545
type: Gene
SIO_000068: ncbigene

position:549169:1
position: 549169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549911:1
position: 549911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:549169-549911:1:exon

LOC105087545
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087545
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087545
subclass of: SO_0000673
so part of: LOC105087545
location: 549169..549183
location: region:549169-549183:1
so has part: feature:549169-549183:1:exon

position:549183:1
position: 549183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:549169-549183:1:exon

LOC105087545
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087545
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087545
subclass of: SO_0000673
so part of: LOC105087545
location: 549269..549911
location: region:549269-549911:1
so has part: feature:549269-549911:1:exon

position:549269:1
position: 549269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:549269-549911:1:exon

LOC105087546
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087546
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(630237..632209)
location: region:630237-632209:-1
so has part: feature:630237-632209:-1:exon

105087546
type: Gene
SIO_000068: ncbigene

position:630237:-1
position: 630237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:632209:-1
position: 632209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630237-632209:-1:exon

LOC105087546
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087546
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087546
subclass of: SO_0000673
so part of: LOC105087546
location: complement(630237..630818)
location: region:630237-630818:-1
so has part: feature:630237-630818:-1:exon

position:630818:-1
position: 630818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:630237-630818:-1:exon

LOC105087546
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087546
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087546
subclass of: SO_0000673
so part of: LOC105087546
location: complement(632190..632209)
location: region:632190-632209:-1
so has part: feature:632190-632209:-1:exon

position:632190:-1
position: 632190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:632190-632209:-1:exon

CALB1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CALB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 718933..741924
location: region:718933-741924:1
so has part: feature:718933-741924:1:exon
subclass of: SO_0000010

105087538
type: Gene
SIO_000068: ncbigene

position:718933:1
position: 718933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:741924:1
position: 741924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:718933-741924:1:exon

CALB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CALB1
product: calbindin 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_010978220.2
SIO_010081: CALB1
subclass of: SO_0000673
so part of: CALB1
location: join(718933..719250,719775..719851,723673..723747,731092..731175,731291..731347,734438..734515,736968..737023,737107..737146,737250..737303,739877..739948,740285..741924)
location: region:718933-741924:1
so has part: feature:718933-719250:1:exon
so has part: feature:719775-719851:1:exon
so has part: feature:723673-723747:1:exon
so has part: feature:731092-731175:1:exon
so has part: feature:731291-731347:1:exon
so has part: feature:734438-734515:1:exon
so has part: feature:736968-737023:1:exon
so has part: feature:737107-737146:1:exon
so has part: feature:737250-737303:1:exon
so has part: feature:739877-739948:1:exon
so has part: feature:740285-741924:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:718933-719250:1:exon

position:719250:1
position: 719250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:719775-719851:1:exon

position:719775:1
position: 719775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:719851:1
position: 719851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:723673-723747:1:exon

position:723673:1
position: 723673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:723747:1
position: 723747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:731092-731175:1:exon

position:731092:1
position: 731092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:731175:1
position: 731175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:731291-731347:1:exon

position:731291:1
position: 731291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:731347:1
position: 731347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:734438-734515:1:exon

position:734438:1
position: 734438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:734515:1
position: 734515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:736968-737023:1:exon

position:736968:1
position: 736968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737023:1
position: 737023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:737107-737146:1:exon

position:737107:1
position: 737107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737146:1
position: 737146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:737250-737303:1:exon

position:737250:1
position: 737250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:737303:1
position: 737303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:739877-739948:1:exon

position:739877:1
position: 739877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:739948:1
position: 739948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:740285-741924:1:exon

position:740285:1
position: 740285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CALB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CALB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: calbindin
translation: MAESHLQSSLISASQFFEIWLHFDADGSGYLEGKELQNLIQELQQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRRYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGVKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQDLDINNIPTYKKSIMALSDGGKLYRTDLALILSAGDN
SIO_010081: CALB1
subclass of: SO_0000673
so part of: CALB1
location: join(719172..719250,719775..719851,723673..723747,731092..731175,731291..731347,734438..734515,736968..737023,737107..737146,737250..737303,739877..739948,740285..740398)
location: region:719172-740398:1
so has part: feature:719172-719250:1:exon
so has part: feature:719775-719851:1:exon
so has part: feature:723673-723747:1:exon
so has part: feature:731092-731175:1:exon
so has part: feature:731291-731347:1:exon
so has part: feature:734438-734515:1:exon
so has part: feature:736968-737023:1:exon
so has part: feature:737107-737146:1:exon
so has part: feature:737250-737303:1:exon
so has part: feature:739877-739948:1:exon
so has part: feature:740285-740398:1:exon

XP_010976522.2
type: Protein
SIO_000068: ncbiprotein

position:719172:1
position: 719172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:740398:1
position: 740398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:719172-719250:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:719775-719851:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:723673-723747:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:731092-731175:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:731291-731347:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:734438-734515:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:736968-737023:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:737107-737146:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:737250-737303:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:739877-739948:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:740285-740398:1:exon

DECR1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: DECR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(744602..776387)
location: region:744602-776387:-1
so has part: feature:744602-776387:-1:exon
subclass of: SO_0000010

105087539
type: Gene
SIO_000068: ncbigene

position:744602:-1
position: 744602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:776387:-1
position: 776387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:744602-776387:-1:exon

DECR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: DECR1
product: 2,4-dienoyl-CoA reductase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_031441390.1
SIO_010081: DECR1
subclass of: SO_0000673
so part of: DECR1
location: complement(join(744602..745221,745318..745380,746068..746214,748253..748325,752324..752423,765913..766060,767596..767682,767805..767862,769054..769256,776230..776387))
location: region:744602-776387:-1
so has part: feature:776230-776387:-1:exon
so has part: feature:769054-769256:-1:exon
so has part: feature:767805-767862:-1:exon
so has part: feature:767596-767682:-1:exon
so has part: feature:765913-766060:-1:exon
so has part: feature:752324-752423:-1:exon
so has part: feature:748253-748325:-1:exon
so has part: feature:746068-746214:-1:exon
so has part: feature:745318-745380:-1:exon
so has part: feature:744602-745221:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:776230-776387:-1:exon

position:776230:-1
position: 776230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:769054-769256:-1:exon

position:769054:-1
position: 769054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:769256:-1
position: 769256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:767805-767862:-1:exon

position:767805:-1
position: 767805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:767862:-1
position: 767862
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:767596-767682:-1:exon

position:767596:-1
position: 767596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:767682:-1
position: 767682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:765913-766060:-1:exon

position:765913:-1
position: 765913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:766060:-1
position: 766060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:752324-752423:-1:exon

position:752324:-1
position: 752324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:752423:-1
position: 752423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:748253-748325:-1:exon

position:748253:-1
position: 748253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748325:-1
position: 748325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:746068-746214:-1:exon

position:746068:-1
position: 746068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:746214:-1
position: 746214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:745318-745380:-1:exon

position:745318:-1
position: 745318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:745380:-1
position: 745380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:744602-745221:-1:exon

position:745221:-1
position: 745221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DECR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: DECR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 2,4-dienoyl-CoA reductase, mitochondrial
translation: MSLLGRVFFAPGRGPRRFFSYGTQILYQTTDAFQSKFFPPVQNVMLPPNSFQGKVAFITGGGTGLGKGMTTHLSSLGAQCVIASRKIDVLKATAEQISSQTGNKVHAIQCDVRDLDMVKNTVSELIKVAGHPDIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAYVTLEIGKQLIKAQKGATFLAITAIYADTGSGFVVPSASAKAGVETMSKSLAAEWGKYGMRFNMIQPGPIKTKGAFSRMDPAGAFEKEMIERIPCGRLGTVGELANLAVFLCSDYASWINGAVIRFDGGEKALISGEFNSLRKVTKEQWDTIEGLIRKTKGS
SIO_010081: DECR1
subclass of: SO_0000673
so part of: DECR1
location: complement(join(745162..745221,745318..745380,746068..746214,748253..748325,752324..752423,765913..766060,767596..767682,767805..767862,769054..769256,776230..776280))
location: region:745162-776280:-1
so has part: feature:776230-776280:-1:exon
so has part: feature:769054-769256:-1:exon
so has part: feature:767805-767862:-1:exon
so has part: feature:767596-767682:-1:exon
so has part: feature:765913-766060:-1:exon
so has part: feature:752324-752423:-1:exon
so has part: feature:748253-748325:-1:exon
so has part: feature:746068-746214:-1:exon
so has part: feature:745318-745380:-1:exon
so has part: feature:745162-745221:-1:exon

XP_031297250.1
type: Protein
SIO_000068: ncbiprotein

position:745162:-1
position: 745162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:776280:-1
position: 776280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:776230-776280:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:769054-769256:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:767805-767862:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:767596-767682:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:765913-766060:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:752324-752423:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:748253-748325:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:746068-746214:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:745318-745380:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:745162-745221:-1:exon

NBN
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 790558..845844
location: region:790558-845844:1
so has part: feature:790558-845844:1:exon
subclass of: SO_0000010

105087540
type: Gene
SIO_000068: ncbigene

position:790558:1
position: 790558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:845844:1
position: 845844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790558-845844:1:exon

NBN
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: NBN
product: nibrin, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_004133218.1
SIO_010081: NBN
so part of: NBN
location: join(790558..790687,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,834814..834882,836169..836324,838802..838915,842026..842998,844343..844392,845666..845844)
location: region:790558-845844:1
so has part: feature:790558-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:834814-834882:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:842026-842998:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790558-790687:1:exon

position:790687:1
position: 790687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

position:792654:1
position: 792654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:792784:1
position: 792784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

position:793899:1
position: 793899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:794047:1
position: 794047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:794507-794666:1:exon

position:794507:1
position: 794507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:794666:1
position: 794666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:797051-797154:1:exon

position:797051:1
position: 797051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:797154:1
position: 797154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:814041-814158:1:exon

position:814041:1
position: 814041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814158:1
position: 814158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:814756-814949:1:exon

position:814756:1
position: 814756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:814949:1
position: 814949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:820389-820486:1:exon

position:820389:1
position: 820389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:820486:1
position: 820486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:825612-825741:1:exon

position:825612:1
position: 825612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:825741:1
position: 825741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:827358-827633:1:exon

position:827358:1
position: 827358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:827633:1
position: 827633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:829362-829806:1:exon

position:829362:1
position: 829362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:829806:1
position: 829806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:834814-834882:1:exon

position:834814:1
position: 834814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:834882:1
position: 834882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:836169-836324:1:exon

position:836169:1
position: 836169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:836324:1
position: 836324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:838802-838915:1:exon

position:838802:1
position: 838802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:838915:1
position: 838915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:842026-842998:1:exon

position:842026:1
position: 842026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:842998:1
position: 842998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:844343-844392:1:exon

position:844343:1
position: 844343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:844392:1
position: 844392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:845666-845844:1:exon

position:845666:1
position: 845666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NBN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NBN
product: nibrin, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031441391.1
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: join(790558..790687,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,834814..834882,836169..836324,838802..838915,844343..844392,845666..845844)
location: region:790558-845844:1
so has part: feature:790558-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:834814-834882:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790558-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:794507-794666:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:797051-797154:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:834814-834882:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:845666-845844:1:exon

NBN
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: NBN
product: nibrin, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_004133219.1
SIO_010081: NBN
so part of: NBN
location: join(790558..790687,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,836169..836324,838802..838915,842026..842998,844343..844392,845666..845844)
location: region:790558-845844:1
so has part: feature:790558-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:842026-842998:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790558-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:794507-794666:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:797051-797154:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:842026-842998:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:845666-845844:1:exon

NBN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NBN
product: nibrin, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_031441392.1
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: join(790558..790687,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,836169..836324,838802..838915,844343..844392,845666..845844)
location: region:790558-845844:1
so has part: feature:790558-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790558-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:794507-794666:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:797051-797154:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:845666-845844:1:exon

NBN
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: NBN
product: nibrin, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133220.1
SIO_010081: NBN
so part of: NBN
location: join(790558..790687,792654..792784,793899..794047,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,834814..834882,836169..836324,838802..838915,842026..842998,844343..844392,845666..845844)
location: region:790558-845844:1
so has part: feature:790558-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:834814-834882:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:842026-842998:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845844:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:790558-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:834814-834882:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:842026-842998:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:845666-845844:1:exon

NBN
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: NBN
product: nibrin, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133221.1
SIO_010081: NBN
so part of: NBN
location: join(790612..790687,791739..791857,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,834814..834882,836169..836324,838802..838915,842026..842998,844343..844392,845666..845844)
location: region:790612-845844:1
so has part: feature:790612-790687:1:exon
so has part: feature:791739-791857:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:834814-834882:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:842026-842998:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845844:1:exon

position:790612:1
position: 790612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790612-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:791739-791857:1:exon

position:791739:1
position: 791739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:791857:1
position: 791857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:794507-794666:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:797051-797154:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:834814-834882:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:842026-842998:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:845666-845844:1:exon

NBN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nibrin isoform X1
translation: MWKLLPATGPAREPYRLLTGVEYIVGRKNCGILIEDDQSISRNHAVLTANFPVTNLSQADEIPILTIKDNSKYGTFVNEEKVQNGLSRTLKTGDRITFGVFASKFRVEYEPLVACSSCLDVSGKTALSQAVLRLGGLTVNNWTEECTHLVMMSVKVTIKTICALICGRPIVKPEYFTEFLKAVQSKKQPPEIVSFYPPVDEPTNGSKNIDLSGRPERKQIFKGKTFVFLNAKQHKKLSTAVIFGGGDTRLITEENEEDDSFFSAPGTCVVDVGMTDSQMLIPNSQKKWIHSIMDRLQRQGLRPIPEAEIGLAVIFMSTENYCDPQGQPSTGLKTTTPGPSPSPGFSGNGNLTPGVPVNTTAYVADTESEQADTCMDLSEKPKEIKIFGLERKFRLPSQETSTVRDPPRVSATSKSTVSHTLVRTAVPNHQLSPAKLPGANKSGDRASQQPQTNSIKNYFKPSTQKRERDEENQEMSLSKSARIEMSCSLLEQTQPITPSMWTRKEQHLSRNEPVGKETDSSFADVDLKSTVKNSATKSLSTEELRSEKRKEIDDLAIEDEVLEELFKNIKPELEMEVKVQKQEEDVNIRKRPRLDLETNGTFNDEARPESNKISQENEIGKKCELKKESLWSTKELSNNEELKDDGEVLPRKVLLTEFRSLVVSNSASRNAASVSNDYGQLKNFKKFKKVSFPGARKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEESLADDLFRYNPNIKRRR
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: join(790651..790687,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,834814..834882,836169..836324,838802..838915,844343..844392,845666..845696)
location: region:790651-845696:1
so has part: feature:790651-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:834814-834882:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845696:1:exon

XP_031297251.1
type: Protein
SIO_000068: ncbiprotein

position:790651:1
position: 790651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:845696:1
position: 845696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:790651-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:794507-794666:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:797051-797154:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:834814-834882:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:845666-845696:1:exon

NBN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NBN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: nibrin isoform X2
translation: MWKLLPATGPAREPYRLLTGVEYIVGRKNCGILIEDDQSISRNHAVLTANFPVTNLSQADEIPILTIKDNSKYGTFVNEEKVQNGLSRTLKTGDRITFGVFASKFRVEYEPLVACSSCLDVSGKTALSQAVLRLGGLTVNNWTEECTHLVMMSVKVTIKTICALICGRPIVKPEYFTEFLKAVQSKKQPPEIVSFYPPVDEPTNGSKNIDLSGRPERKQIFKGKTFVFLNAKQHKKLSTAVIFGGGDTRLITEENEEDDSFFSAPGTCVVDVGMTDSQMLIPNSQKKWIHSIMDRLQRQGLRPIPEAEIGLAVIFMSTENYCDPQGQPSTGLKTTTPGPSPSPGFSGNGNLTPGVPVNTTAYVADTESEQADTCMDLSEKPKEIKIFGLERKFRLPSQETSTVRDPPRVSATSKSTVSHTLVRTAVPNHQLSPAKLPGANKSGDRASQQPQTNSIKNYFKPSTQKRERDEENQEMSLSKSARIEMSCSLLEQTQPITPSMWTRKEQHLSRNEPVGKETDSSFADVDLKSTVKNSATKSLSTEELRSEKRKEIDDLAIEDEVLEELFKNIKPELEMEVKVQKQEEDVNIRKRPRLDLETNGTFNDEARPESNKISNNEELKDDGEVLPRKVLLTEFRSLVVSNSASRNAASVSNDYGQLKNFKKFKKVSFPGARKLPHIIGGSDLIAHHARKNTELEEWLRQEMEVQNQHAKEESLADDLFRYNPNIKRRR
SIO_010081: NBN
subclass of: SO_0000673
so part of: NBN
location: join(790651..790687,792654..792784,793899..794047,794507..794666,797051..797154,814041..814158,814756..814949,820389..820486,825612..825741,827358..827633,829362..829806,836169..836324,838802..838915,844343..844392,845666..845696)
location: region:790651-845696:1
so has part: feature:790651-790687:1:exon
so has part: feature:792654-792784:1:exon
so has part: feature:793899-794047:1:exon
so has part: feature:794507-794666:1:exon
so has part: feature:797051-797154:1:exon
so has part: feature:814041-814158:1:exon
so has part: feature:814756-814949:1:exon
so has part: feature:820389-820486:1:exon
so has part: feature:825612-825741:1:exon
so has part: feature:827358-827633:1:exon
so has part: feature:829362-829806:1:exon
so has part: feature:836169-836324:1:exon
so has part: feature:838802-838915:1:exon
so has part: feature:844343-844392:1:exon
so has part: feature:845666-845696:1:exon

XP_031297252.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:790651-790687:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:792654-792784:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:793899-794047:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:794507-794666:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:797051-797154:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:814041-814158:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:814756-814949:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:820389-820486:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:825612-825741:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:827358-827633:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:829362-829806:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:836169-836324:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:838802-838915:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:844343-844392:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:845666-845696:1:exon

OSGIN2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: OSGIN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(856294..883243)
location: region:856294-883243:-1
so has part: feature:856294-883243:-1:exon
subclass of: SO_0000010

105087542
type: Gene
SIO_000068: ncbigene

position:856294:-1
position: 856294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:883243:-1
position: 883243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:856294-883243:-1:exon

OSGIN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: OSGIN2
product: oxidative stress induced growth inhibitor family member 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_010978223.2
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: complement(join(856294..860907,864193..864284,867145..867336,867859..867995,873295..873449,882793..883243))
location: region:856294-883243:-1
so has part: feature:882793-883243:-1:exon
so has part: feature:873295-873449:-1:exon
so has part: feature:867859-867995:-1:exon
so has part: feature:867145-867336:-1:exon
so has part: feature:864193-864284:-1:exon
so has part: feature:856294-860907:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:882793-883243:-1:exon

position:882793:-1
position: 882793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:873295-873449:-1:exon

position:873295:-1
position: 873295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:873449:-1
position: 873449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:867859-867995:-1:exon

position:867859:-1
position: 867859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:867995:-1
position: 867995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:867145-867336:-1:exon

position:867145:-1
position: 867145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:867336:-1
position: 867336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:864193-864284:-1:exon

position:864193:-1
position: 864193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:864284:-1
position: 864284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:856294-860907:-1:exon

position:860907:-1
position: 860907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OSGIN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: OSGIN2
product: oxidative stress induced growth inhibitor family member 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_031441394.1
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: complement(join(856294..860907,864193..864284,867145..867336,867859..867995,873295..873440,882018..882198))
location: region:856294-882198:-1
so has part: feature:882018-882198:-1:exon
so has part: feature:873295-873440:-1:exon
so has part: feature:867859-867995:-1:exon
so has part: feature:867145-867336:-1:exon
so has part: feature:864193-864284:-1:exon
so has part: feature:856294-860907:-1:exon

position:882198:-1
position: 882198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:882018-882198:-1:exon

position:882018:-1
position: 882018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:873295-873440:-1:exon

position:873440:-1
position: 873440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:867859-867995:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:867145-867336:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:864193-864284:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:856294-860907:-1:exon

OSGIN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: OSGIN2
product: oxidative stress induced growth inhibitor family member 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_031441393.1
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: complement(join(856294..860907,864193..864284,867145..867336,867859..867995,873295..873449,882018..882198))
location: region:856294-882198:-1
so has part: feature:882018-882198:-1:exon
so has part: feature:873295-873449:-1:exon
so has part: feature:867859-867995:-1:exon
so has part: feature:867145-867336:-1:exon
so has part: feature:864193-864284:-1:exon
so has part: feature:856294-860907:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:882018-882198:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:873295-873449:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:867859-867995:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:867145-867336:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:864193-864284:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:856294-860907:-1:exon

OSGIN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: OSGIN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oxidative stress-induced growth inhibitor 2 isoform X2
translation: MPVWCCRCSLAAHFSDTETEGEIFNSLVQYLGDNLGRKVTAMPLVEETSLLGDSSVTLPVVVIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHGKLEEARHLSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDYPSVLHWKLEQHHYIPHLVLGKGPPGGAWHNMEGSMLTISFGNWMELPGLKFKDWVSSKRRNIKGDRVMPEEIAHYYKHYVKVMGLQKNFRENTYITSVSRLYRDQIDNDGQDRDISTQPLQIEKSKFIKRNWEIRGYQRTADGSPVPFCLFAENVALATGSLDSPGRLEIEGEDFPFVFHSMPEFGAAISKGKLRGKVDPVLIVGSGLTAADAVLCAYNNNVPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSLHSRLLPDYTSFPEHHVLSFKSDLKCILQSISGLKKIFKLSAAVVLIGSHPNLSFLKEQGCYLGHNSSQPITCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLATRQKKKQHLFVERGGGDGIA
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: complement(join(859875..860907,864193..864284,867145..867336,867859..867995,873295..873440,882018..882061))
location: region:859875-882061:-1
so has part: feature:882018-882061:-1:exon
so has part: feature:873295-873440:-1:exon
so has part: feature:867859-867995:-1:exon
so has part: feature:867145-867336:-1:exon
so has part: feature:864193-864284:-1:exon
so has part: feature:859875-860907:-1:exon

XP_031297254.1
type: Protein
SIO_000068: ncbiprotein

position:859875:-1
position: 859875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:882061:-1
position: 882061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:882018-882061:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:873295-873440:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:867859-867995:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:867145-867336:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:864193-864284:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:859875-860907:-1:exon

OSGIN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: OSGIN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oxidative stress-induced growth inhibitor 2 isoform X1
translation: MPVWCCRCSLAAHFRNYSDTETEGEIFNSLVQYLGDNLGRKVTAMPLVEETSLLGDSSVTLPVVVIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHGKLEEARHLSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDYPSVLHWKLEQHHYIPHLVLGKGPPGGAWHNMEGSMLTISFGNWMELPGLKFKDWVSSKRRNIKGDRVMPEEIAHYYKHYVKVMGLQKNFRENTYITSVSRLYRDQIDNDGQDRDISTQPLQIEKSKFIKRNWEIRGYQRTADGSPVPFCLFAENVALATGSLDSPGRLEIEGEDFPFVFHSMPEFGAAISKGKLRGKVDPVLIVGSGLTAADAVLCAYNNNVPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSLHSRLLPDYTSFPEHHVLSFKSDLKCILQSISGLKKIFKLSAAVVLIGSHPNLSFLKEQGCYLGHNSSQPITCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLATRQKKKQHLFVERGGGDGIA
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: complement(join(859875..860907,864193..864284,867145..867336,867859..867995,873295..873449,882018..882061))
location: region:859875-882061:-1
so has part: feature:882018-882061:-1:exon
so has part: feature:873295-873449:-1:exon
so has part: feature:867859-867995:-1:exon
so has part: feature:867145-867336:-1:exon
so has part: feature:864193-864284:-1:exon
so has part: feature:859875-860907:-1:exon

XP_031297253.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:882018-882061:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:873295-873449:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:867859-867995:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:867145-867336:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:864193-864284:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:859875-860907:-1:exon

OSGIN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: OSGIN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oxidative stress-induced growth inhibitor 2 isoform X3
translation: MPLVEETSLLGDSSVTLPVVVIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHGKLEEARHLSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDYPSVLHWKLEQHHYIPHLVLGKGPPGGAWHNMEGSMLTISFGNWMELPGLKFKDWVSSKRRNIKGDRVMPEEIAHYYKHYVKVMGLQKNFRENTYITSVSRLYRDQIDNDGQDRDISTQPLQIEKSKFIKRNWEIRGYQRTADGSPVPFCLFAENVALATGSLDSPGRLEIEGEDFPFVFHSMPEFGAAISKGKLRGKVDPVLIVGSGLTAADAVLCAYNNNVPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSLHSRLLPDYTSFPEHHVLSFKSDLKCILQSISGLKKIFKLSAAVVLIGSHPNLSFLKEQGCYLGHNSSQPITCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLATRQKKKQHLFVERGGGDGIA
SIO_010081: OSGIN2
subclass of: SO_0000673
so part of: OSGIN2
location: complement(join(859875..860907,864193..864284,867145..867336,867859..867995,873295..873361))
location: region:859875-873361:-1
so has part: feature:873295-873361:-1:exon
so has part: feature:867859-867995:-1:exon
so has part: feature:867145-867336:-1:exon
so has part: feature:864193-864284:-1:exon
so has part: feature:859875-860907:-1:exon

XP_010976525.1
type: Protein
SIO_000068: ncbiprotein

position:873361:-1
position: 873361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:873295-873361:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:867859-867995:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:867145-867336:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:864193-864284:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:859875-860907:-1:exon

LOC105087547
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087547
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 968667..970453
location: region:968667-970453:1
so has part: feature:968667-970453:1:exon

105087547
type: Gene
SIO_000068: ncbigene

position:968667:1
position: 968667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:970453:1
position: 970453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:968667-970453:1:exon

LOC105087547
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087547
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087547
subclass of: SO_0000673
so part of: LOC105087547
location: 968667..970453
location: region:968667-970453:1
so has part: feature:968667-970453:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:968667-970453:1:exon

RIPK2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: RIPK2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(976027..1004043)
location: region:976027-1004043:-1
so has part: feature:976027-1004043:-1:exon
subclass of: SO_0000010

105087544
type: Gene
SIO_000068: ncbigene

position:976027:-1
position: 976027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1004043:-1
position: 1004043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:976027-1004043:-1:exon

RIPK2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RIPK2
product: receptor interacting serine/threonine kinase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_010978224.2
SIO_010081: RIPK2
subclass of: SO_0000673
so part of: RIPK2
location: complement(join(976027..977078,977662..977817,979507..979600,980838..980927,982617..982702,986897..987058,987880..987929,988653..988810,996163..996318,998611..998764,1003700..1004043))
location: region:976027-1004043:-1
so has part: feature:1003700-1004043:-1:exon
so has part: feature:998611-998764:-1:exon
so has part: feature:996163-996318:-1:exon
so has part: feature:988653-988810:-1:exon
so has part: feature:987880-987929:-1:exon
so has part: feature:986897-987058:-1:exon
so has part: feature:982617-982702:-1:exon
so has part: feature:980838-980927:-1:exon
so has part: feature:979507-979600:-1:exon
so has part: feature:977662-977817:-1:exon
so has part: feature:976027-977078:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1003700-1004043:-1:exon

position:1003700:-1
position: 1003700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:998611-998764:-1:exon

position:998611:-1
position: 998611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:998764:-1
position: 998764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:996163-996318:-1:exon

position:996163:-1
position: 996163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:996318:-1
position: 996318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:988653-988810:-1:exon

position:988653:-1
position: 988653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:988810:-1
position: 988810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:987880-987929:-1:exon

position:987880:-1
position: 987880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:987929:-1
position: 987929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:986897-987058:-1:exon

position:986897:-1
position: 986897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:987058:-1
position: 987058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:982617-982702:-1:exon

position:982617:-1
position: 982617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:982702:-1
position: 982702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:980838-980927:-1:exon

position:980838:-1
position: 980838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:980927:-1
position: 980927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:979507-979600:-1:exon

position:979507:-1
position: 979507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:979600:-1
position: 979600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:977662-977817:-1:exon

position:977662:-1
position: 977662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:977817:-1
position: 977817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:976027-977078:-1:exon

position:977078:-1
position: 977078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RIPK2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RIPK2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: receptor-interacting serine/threonine-protein kinase 2
translation: MDHEAICSALPSIPYHKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSERIDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKNEYPDVPWPLRFRILHEIALGVNYLHNMNPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRLMSLSQSQSSKSAPEGGTIIYMPPENYEPGQKSRASVKHDIYSYAVITWEVLSRKHPFEEVTNPLQIMYSVSQGHRPDTKEETLPCDIPHRALMVSLIESGWAQNPDERPSFLKCLIELEPIMRTFEEITFLEAVIQLKKTKLQSASSTIPLCDKKKMESSMNISVNHGPQEESCDSSQLRKTTGSPRTSGFLSAPQDNDFLPRKTQDFSVLRQCPVNHSWNSNISVAQRAACCDHKTAPCSLAIINPLSAEGNSERFQTGIAQQWIQSKREDIVSQMTEACLNQSLDALLSRDLIMKEDYELISTKPTRTSKVRQLLDTSDIQGEEFAKVIVQKLKDNKQMGLQPYPEILVVSQLSSLNLFQNKSL
SIO_010081: RIPK2
subclass of: SO_0000673
so part of: RIPK2
location: complement(join(976741..977078,977662..977817,979507..979600,980838..980927,982617..982702,986897..987058,987880..987929,988653..988810,996163..996318,998611..998764,1003700..1003872))
location: region:976741-1003872:-1
so has part: feature:1003700-1003872:-1:exon
so has part: feature:998611-998764:-1:exon
so has part: feature:996163-996318:-1:exon
so has part: feature:988653-988810:-1:exon
so has part: feature:987880-987929:-1:exon
so has part: feature:986897-987058:-1:exon
so has part: feature:982617-982702:-1:exon
so has part: feature:980838-980927:-1:exon
so has part: feature:979507-979600:-1:exon
so has part: feature:977662-977817:-1:exon
so has part: feature:976741-977078:-1:exon

XP_010976526.1
type: Protein
SIO_000068: ncbiprotein

position:976741:-1
position: 976741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1003872:-1
position: 1003872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1003700-1003872:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:998611-998764:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:996163-996318:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:988653-988810:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:987880-987929:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:986897-987058:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:982617-982702:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:980838-980927:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:979507-979600:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:977662-977817:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:976741-977078:-1:exon

LOC105087543
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087543
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(994115..996125)
location: region:994115-996125:-1
so has part: feature:994115-996125:-1:exon

105087543
type: Gene
SIO_000068: ncbigene

position:994115:-1
position: 994115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:996125:-1
position: 996125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:994115-996125:-1:exon

LOC105087543
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087543
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC105087543
subclass of: SO_0000673
so part of: LOC105087543
location: complement(994115..995728)
location: region:994115-995728:-1
so has part: feature:994115-995728:-1:exon

position:995728:-1
position: 995728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:994115-995728:-1:exon

LOC105087543
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087543
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
pseudo: true
SIO_010081: LOC105087543
subclass of: SO_0000673
so part of: LOC105087543
location: complement(995806..996125)
location: region:995806-996125:-1
so has part: feature:995806-996125:-1:exon

position:995806:-1
position: 995806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:995806-996125:-1:exon

LOC105087548
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087548
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1018393..1020879)
location: region:1018393-1020879:-1
so has part: feature:1018393-1020879:-1:exon

105087548
type: Gene
SIO_000068: ncbigene

position:1018393:-1
position: 1018393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1020879:-1
position: 1020879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1018393-1020879:-1:exon

LOC105087548
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087548
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087548
subclass of: SO_0000673
so part of: LOC105087548
location: complement(1018393..1020879)
location: region:1018393-1020879:-1
so has part: feature:1018393-1020879:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1018393-1020879:-1:exon

LOC105087550
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087550
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1065919..1067209
location: region:1065919-1067209:1
so has part: feature:1065919-1067209:1:exon

105087550
type: Gene
SIO_000068: ncbigene

position:1065919:1
position: 1065919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1067209:1
position: 1067209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1065919-1067209:1:exon

LOC105087550
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087550
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087550
subclass of: SO_0000673
so part of: LOC105087550
location: 1065919..1067209
location: region:1065919-1067209:1
so has part: feature:1065919-1067209:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1065919-1067209:1:exon

LOC105087551
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105087551
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1366944..1368668
location: region:1366944-1368668:1
so has part: feature:1366944-1368668:1:exon

105087551
type: Gene
SIO_000068: ncbigene

position:1366944:1
position: 1366944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1368668:1
position: 1368668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1366944-1368668:1:exon

LOC105087551
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105087551
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105087551
subclass of: SO_0000673
so part of: LOC105087551
location: 1366944..1368668
location: region:1366944-1368668:1
so has part: feature:1366944-1368668:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1366944-1368668:1:exon

LOC105089493
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105089493
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1539589..1540751
location: region:1539589-1540751:1
so has part: feature:1539589-1540751:1:exon

105089493
type: Gene
SIO_000068: ncbigene

position:1539589:1
position: 1539589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1540751:1
position: 1540751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1539589-1540751:1:exon

LOC105089493
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105089493
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105089493
subclass of: SO_0000673
so part of: LOC105089493
location: 1539589..1540751
location: region:1539589-1540751:1
so has part: feature:1539589-1540751:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1539589-1540751:1:exon

LOC105089492
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105089492
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1627295..1665656
location: region:1627295-1665656:1
so has part: feature:1627295-1665656:1:exon

105089492
type: Gene
SIO_000068: ncbigene

position:1627295:1
position: 1627295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1665656:1
position: 1665656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1627295-1665656:1:exon

LOC105089492
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105089492
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105089492
subclass of: SO_0000673
so part of: LOC105089492
location: 1627295..1627364
location: region:1627295-1627364:1
so has part: feature:1627295-1627364:1:exon

position:1627364:1
position: 1627364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1627295-1627364:1:exon

LOC105089492
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105089492
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 64% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105089492
subclass of: SO_0000673
so part of: LOC105089492
location: 1664768..1665656
location: region:1664768-1665656:1
so has part: feature:1664768-1665656:1:exon

position:1664768:1
position: 1664768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1664768-1665656:1:exon

LOC116149602
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149602
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 1697181..1698162
location: region:1697181-1698162:1
so has part: feature:1697181-1698162:1:exon

116149602
type: Gene
SIO_000068: ncbigene

position:1697181:1
position: 1697181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1698162:1
position: 1698162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1697181-1698162:1:exon

LOC116149602
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149602
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 69% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149602
subclass of: SO_0000673
so part of: LOC116149602
location: 1697181..1698162
location: region:1697181-1698162:1
so has part: feature:1697181-1698162:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1697181-1698162:1:exon

MMP16
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MMP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1842958..2117883
location: region:1842958-2117883:1
so has part: feature:1842958-2117883:1:exon
subclass of: SO_0000010

105089491
type: Gene
SIO_000068: ncbigene

position:1842958:1
position: 1842958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2117883:1
position: 2117883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1842958-2117883:1:exon

MMP16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MMP16
product: matrix metallopeptidase 16
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_010980548.2
SIO_010081: MMP16
subclass of: SO_0000673
so part of: MMP16
location: join(1842958..1843453,1977054..1977202,1986561..1986683,1997909..1998213,2043053..2043214,2045140..2045351,2085217..2085355,2101002..2101152,2110044..2110159,2116305..2117883)
location: region:1842958-2117883:1
so has part: feature:1842958-1843453:1:exon
so has part: feature:1977054-1977202:1:exon
so has part: feature:1986561-1986683:1:exon
so has part: feature:1997909-1998213:1:exon
so has part: feature:2043053-2043214:1:exon
so has part: feature:2045140-2045351:1:exon
so has part: feature:2085217-2085355:1:exon
so has part: feature:2101002-2101152:1:exon
so has part: feature:2110044-2110159:1:exon
so has part: feature:2116305-2117883:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1842958-1843453:1:exon

position:1843453:1
position: 1843453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1977054-1977202:1:exon

position:1977054:1
position: 1977054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1977202:1
position: 1977202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1986561-1986683:1:exon

position:1986561:1
position: 1986561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1986683:1
position: 1986683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1997909-1998213:1:exon

position:1997909:1
position: 1997909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1998213:1
position: 1998213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2043053-2043214:1:exon

position:2043053:1
position: 2043053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2043214:1
position: 2043214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2045140-2045351:1:exon

position:2045140:1
position: 2045140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2045351:1
position: 2045351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2085217-2085355:1:exon

position:2085217:1
position: 2085217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2085355:1
position: 2085355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2101002-2101152:1:exon

position:2101002:1
position: 2101002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2101152:1
position: 2101152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2110044-2110159:1:exon

position:2110044:1
position: 2110044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2110159:1
position: 2110159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2116305-2117883:1:exon

position:2116305:1
position: 2116305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MMP16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MMP16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: matrix metalloproteinase-16
translation: MILLTFGTGRRLDFVHHSGAFFLQTLLWILCATVCGTEQYFNVEVWLQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQTRGSSKFNIRRKRYALTGQKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYGPPDKIPPPTRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKPNICDGNFNTLAILRREMFVFKDQWFWRVRNNRVMDGYPMQITYFWRGLPPSIDAVYENSDGNFVFFKGNKYWVFKDTTLQPGYPHDLISLGSGIPPHGIDSAIWWEDVGKTYFFKGDRYWRYSEEMKTMDPGYPKPITVWKGIPESPQGAFVHKENGFTYFYKGKEYWKFNNQILKVEPGYPRSILKDFMGCDGPTDRDKEGHSPPDDVDIVIKLDNTASTVKAIAIVIPCILALCLLVLVYTVFQFKRKGTPRHILYCKRSMQEWV
SIO_010081: MMP16
subclass of: SO_0000673
so part of: MMP16
location: join(1843322..1843453,1977054..1977202,1986561..1986683,1997909..1998213,2043053..2043214,2045140..2045351,2085217..2085355,2101002..2101152,2110044..2110159,2116305..2116639)
location: region:1843322-2116639:1
so has part: feature:1843322-1843453:1:exon
so has part: feature:1977054-1977202:1:exon
so has part: feature:1986561-1986683:1:exon
so has part: feature:1997909-1998213:1:exon
so has part: feature:2043053-2043214:1:exon
so has part: feature:2045140-2045351:1:exon
so has part: feature:2085217-2085355:1:exon
so has part: feature:2101002-2101152:1:exon
so has part: feature:2110044-2110159:1:exon
so has part: feature:2116305-2116639:1:exon

XP_010978850.1
type: Protein
SIO_000068: ncbiprotein

position:1843322:1
position: 1843322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2116639:1
position: 2116639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1843322-1843453:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1977054-1977202:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1986561-1986683:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1997909-1998213:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2043053-2043214:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2045140-2045351:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2085217-2085355:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2101002-2101152:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2110044-2110159:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2116305-2116639:1:exon

CNBD1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CNBD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2524509..2754531)
location: region:2524509-2754531:-1
so has part: feature:2524509-2754531:-1:exon
subclass of: SO_0000010

105088572
type: Gene
SIO_000068: ncbigene

position:2524509:-1
position: 2524509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2754531:-1
position: 2754531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2524509-2754531:-1:exon

CNBD1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CNBD1
product: cyclic nucleotide binding domain containing 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441377.1
SIO_010081: CNBD1
subclass of: SO_0000673
so part of: CNBD1
location: complement(join(2524509..2524647,2543564..2543748,2545370..2545479,2580258..2580390,2581581..2581718,2601202..2601395,2614290..2614435,2712606..2712764,2728544..2728651,2734654..2734792,2738644..2738718,2753774..2754531))
location: region:2524509-2754531:-1
so has part: feature:2753774-2754531:-1:exon
so has part: feature:2738644-2738718:-1:exon
so has part: feature:2734654-2734792:-1:exon
so has part: feature:2728544-2728651:-1:exon
so has part: feature:2712606-2712764:-1:exon
so has part: feature:2614290-2614435:-1:exon
so has part: feature:2601202-2601395:-1:exon
so has part: feature:2581581-2581718:-1:exon
so has part: feature:2580258-2580390:-1:exon
so has part: feature:2545370-2545479:-1:exon
so has part: feature:2543564-2543748:-1:exon
so has part: feature:2524509-2524647:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2753774-2754531:-1:exon

position:2753774:-1
position: 2753774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2738644-2738718:-1:exon

position:2738644:-1
position: 2738644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2738718:-1
position: 2738718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2734654-2734792:-1:exon

position:2734654:-1
position: 2734654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2734792:-1
position: 2734792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2728544-2728651:-1:exon

position:2728544:-1
position: 2728544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2728651:-1
position: 2728651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2712606-2712764:-1:exon

position:2712606:-1
position: 2712606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2712764:-1
position: 2712764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2614290-2614435:-1:exon

position:2614290:-1
position: 2614290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2614435:-1
position: 2614435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2601202-2601395:-1:exon

position:2601202:-1
position: 2601202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2601395:-1
position: 2601395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2581581-2581718:-1:exon

position:2581581:-1
position: 2581581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2581718:-1
position: 2581718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2580258-2580390:-1:exon

position:2580258:-1
position: 2580258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2580390:-1
position: 2580390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2545370-2545479:-1:exon

position:2545370:-1
position: 2545370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2545479:-1
position: 2545479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2543564-2543748:-1:exon

position:2543564:-1
position: 2543564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2543748:-1
position: 2543748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2524509-2524647:-1:exon

position:2524647:-1
position: 2524647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CNBD1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CNBD1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic nucleotide-binding domain-containing protein 1
translation: MPKSPLPEAILSHMVAISNLPPPPPRSIPSEWAAHGGSALFPMVLTPDTRNGAFKGWCSLKMSSLLDYGQLKHYVTGEDCSSVSIGGYQLALSIQNCFVFCGARKCGQRLTESCFYLIVVNKLEACDSSQRNILSAHNMFIKEYPKIFLKKKTKLPKLFEEEGKRKPAEGTEESQPQQPDDSHNVAIHVKKEHGGLTLYGPKKSEEQLTEFLAILKKLPIHRTPSEHNAVWKMLKKIPDLTSQLIDEHLKILSKSVISETWIKGSTVVGNDGFYVILKGVARPRTQMYKNLIEENEPTASFIPQNFHSFAFSEELRDSVVSAMHIPSCDPVLGQWSTFGTLEVTAKIESETKAYSVVTEEDCEILKIPAKNCAKLKSEKTKLENKRKVKLILKCPYYKEWPTLSIYELVALIKWKTFPPGHVIVESGNIISFVAYINSGYCKIYRNIVGLSKPQSKKVKKVQKLVYMGTLQEKESFGEISVLLQVPFTCTVVTGNGVEMAIIEDKDLFGKYINILYLTVISSTSSASAAPETARPTLPHAPPPQPTQHEDDNDEDLYDDPPPLNE
SIO_010081: CNBD1
subclass of: SO_0000673
so part of: CNBD1
location: complement(join(2524509..2524647,2543564..2543748,2545370..2545479,2580258..2580390,2581581..2581718,2601202..2601395,2614290..2614435,2712606..2712764,2728544..2728651,2734654..2734792,2738644..2738718,2753774..2753945))
location: region:2524509-2753945:-1
so has part: feature:2753774-2753945:-1:exon
so has part: feature:2738644-2738718:-1:exon
so has part: feature:2734654-2734792:-1:exon
so has part: feature:2728544-2728651:-1:exon
so has part: feature:2712606-2712764:-1:exon
so has part: feature:2614290-2614435:-1:exon
so has part: feature:2601202-2601395:-1:exon
so has part: feature:2581581-2581718:-1:exon
so has part: feature:2580258-2580390:-1:exon
so has part: feature:2545370-2545479:-1:exon
so has part: feature:2543564-2543748:-1:exon
so has part: feature:2524509-2524647:-1:exon

XP_031297237.1
type: Protein
SIO_000068: ncbiprotein

position:2753945:-1
position: 2753945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2753774-2753945:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2738644-2738718:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2734654-2734792:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2728544-2728651:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2712606-2712764:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2614290-2614435:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2601202-2601395:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2581581-2581718:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2580258-2580390:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2545370-2545479:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2543564-2543748:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2524509-2524647:-1:exon

TRNAA-UGC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAA-UGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(2584204..2584275)
location: region:2584204-2584275:-1
so has part: feature:2584204-2584275:-1:exon
subclass of: SO_0000663

116149701
type: Gene
SIO_000068: ncbigene

position:2584204:-1
position: 2584204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2584275:-1
position: 2584275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2584204-2584275:-1:exon

TRNAA-UGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAA-UGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(2584241..2584243),aa:Ala, seq:tgc)
SIO_010081: TRNAA-UGC
subclass of: SO_0000673
so part of: TRNAA-UGC
location: complement(2584204..2584275)
location: region:2584204-2584275:-1
so has part: feature:2584204-2584275:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2584204-2584275:-1:exon

LOC105088573
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088573
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2803647..2805563
location: region:2803647-2805563:1
so has part: feature:2803647-2805563:1:exon

105088573
type: Gene
SIO_000068: ncbigene

position:2803647:1
position: 2803647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2805563:1
position: 2805563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2803647-2805563:1:exon

LOC105088573
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088573
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 47% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088573
subclass of: SO_0000673
so part of: LOC105088573
location: 2803647..2805563
location: region:2803647-2805563:1
so has part: feature:2803647-2805563:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2803647-2805563:1:exon

CNGB3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CNGB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2853493..2963609
location: region:2853493-2963609:1
so has part: feature:2853493-2963609:1:exon
subclass of: SO_0000010

105088493
type: Gene
SIO_000068: ncbigene

position:2853493:1
position: 2853493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2963609:1
position: 2963609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2853493-2963609:1:exon

CNGB3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CNGB3
product: cyclic nucleotide gated channel subunit beta 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 46% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010979349.2
SIO_010081: CNGB3
subclass of: SO_0000673
so part of: CNGB3
location: join(2853493..2853653,2857248..2857329,2868827..2868953,2895943..2896097,2897468..2897596,2898465..2898673,2904040..2904090,2906579..2906665,2909770..2909834,2910583..2910705,2919820..2919961,2923878..2924037,2925914..2926011,2940089..2940172,2945997..2946115,2959966..2960112,2960345..2960519,2962847..2963609)
location: region:2853493-2963609:1
so has part: feature:2853493-2853653:1:exon
so has part: feature:2857248-2857329:1:exon
so has part: feature:2868827-2868953:1:exon
so has part: feature:2895943-2896097:1:exon
so has part: feature:2897468-2897596:1:exon
so has part: feature:2898465-2898673:1:exon
so has part: feature:2904040-2904090:1:exon
so has part: feature:2906579-2906665:1:exon
so has part: feature:2909770-2909834:1:exon
so has part: feature:2910583-2910705:1:exon
so has part: feature:2919820-2919961:1:exon
so has part: feature:2923878-2924037:1:exon
so has part: feature:2925914-2926011:1:exon
so has part: feature:2940089-2940172:1:exon
so has part: feature:2945997-2946115:1:exon
so has part: feature:2959966-2960112:1:exon
so has part: feature:2960345-2960519:1:exon
so has part: feature:2962847-2963609:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2853493-2853653:1:exon

position:2853653:1
position: 2853653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2857248-2857329:1:exon

position:2857248:1
position: 2857248
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2857329:1
position: 2857329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2868827-2868953:1:exon

position:2868827:1
position: 2868827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2868953:1
position: 2868953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2895943-2896097:1:exon

position:2895943:1
position: 2895943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2896097:1
position: 2896097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2897468-2897596:1:exon

position:2897468:1
position: 2897468
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2897596:1
position: 2897596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2898465-2898673:1:exon

position:2898465:1
position: 2898465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2898673:1
position: 2898673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2904040-2904090:1:exon

position:2904040:1
position: 2904040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2904090:1
position: 2904090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2906579-2906665:1:exon

position:2906579:1
position: 2906579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2906665:1
position: 2906665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2909770-2909834:1:exon

position:2909770:1
position: 2909770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2909834:1
position: 2909834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2910583-2910705:1:exon

position:2910583:1
position: 2910583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2910705:1
position: 2910705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2919820-2919961:1:exon

position:2919820:1
position: 2919820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2919961:1
position: 2919961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2923878-2924037:1:exon

position:2923878:1
position: 2923878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2924037:1
position: 2924037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2925914-2926011:1:exon

position:2925914:1
position: 2925914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2926011:1
position: 2926011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2940089-2940172:1:exon

position:2940089:1
position: 2940089
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2940172:1
position: 2940172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2945997-2946115:1:exon

position:2945997:1
position: 2945997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2946115:1
position: 2946115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2959966-2960112:1:exon

position:2959966:1
position: 2959966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2960112:1
position: 2960112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2960345-2960519:1:exon

position:2960345:1
position: 2960345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2960519:1
position: 2960519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2962847-2963609:1:exon

position:2962847:1
position: 2962847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CNGB3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CNGB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclic nucleotide-gated cation channel beta-3
translation: MLKSLTIKFNKVKPSEGNDENKRGPGTRSEPPRPTTQGENKNEKKSLETEMPPVSSEESHTKIQDKTSEKTALRNQTVNPDSQNPAESTGTKPEQEDMGPGKEGLVSPKTKPLGAPVINEYADAQLHNLVRRLRQRTDFYKKKLAEDDLSSPEASPQTAKPTVVSSAQESSAMLKEEHHQKVPLTEHLKRIRLPRSIDSNTGRFCLLWLLPVAIAYNWNCWLVPLRAVFPYQTPDNTHYWLVTDIACDFIYLFDLLLIQPRLQFMRGGDIIVDSNELKRHYRSSTKFQLDVASIMPFDVFYLFFGFNPIFRINRMLKYTSFFEFNHHLESIMNKAYIYRVIRTTGYLLFTLHINACLYYWASDYEGIGSTRWVYDGEGNKYLRCYYWAVRSLITIGGLPEPQTTFEIVFQLLNFFSGVFVFSSLIGQMQDVIGAATANQNNFRACMDHTVAYMNTYSIPKIVQNRVRTWYEYTWDSQRMLDESDLLETLPTTMQLALTVDVNFSIISKVDLFKGCDTQMIYDMLLKLKSIVYLPGDFVCKKGEIGKEMYIIKQGEVQVLGGADGAQVLVTLKAGAVFGEISLLAARGGNRRTANVVAHGFANLLTLDKKTLQEILVHYPDSEKLLMKKARVLLKKKAPGKGATPPNKGLAFLFPPKQETPKMFKALLGGAGKAGLARLLTLKREQAIQEKSENAEGEEDKTKEHEEKGSEPAETPLDAAKHGANSVTAEARPQPIRRAGLPRGTTGQSLIISMAPSAEAGEEVLTIEVKEKAKQ
SIO_010081: CNGB3
subclass of: SO_0000673
so part of: CNGB3
location: join(2853543..2853653,2857248..2857329,2868827..2868953,2895943..2896097,2897468..2897596,2898465..2898673,2904040..2904090,2906579..2906665,2909770..2909834,2910583..2910705,2919820..2919961,2923878..2924037,2925914..2926011,2940089..2940172,2945997..2946115,2959966..2960112,2960345..2960519,2962847..2963107)
location: region:2853543-2963107:1
so has part: feature:2853543-2853653:1:exon
so has part: feature:2857248-2857329:1:exon
so has part: feature:2868827-2868953:1:exon
so has part: feature:2895943-2896097:1:exon
so has part: feature:2897468-2897596:1:exon
so has part: feature:2898465-2898673:1:exon
so has part: feature:2904040-2904090:1:exon
so has part: feature:2906579-2906665:1:exon
so has part: feature:2909770-2909834:1:exon
so has part: feature:2910583-2910705:1:exon
so has part: feature:2919820-2919961:1:exon
so has part: feature:2923878-2924037:1:exon
so has part: feature:2925914-2926011:1:exon
so has part: feature:2940089-2940172:1:exon
so has part: feature:2945997-2946115:1:exon
so has part: feature:2959966-2960112:1:exon
so has part: feature:2960345-2960519:1:exon
so has part: feature:2962847-2963107:1:exon

XP_010977651.2
type: Protein
SIO_000068: ncbiprotein

position:2853543:1
position: 2853543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2963107:1
position: 2963107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2853543-2853653:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2857248-2857329:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2868827-2868953:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2895943-2896097:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2897468-2897596:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2898465-2898673:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2904040-2904090:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2906579-2906665:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2909770-2909834:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2910583-2910705:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2919820-2919961:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2923878-2924037:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2925914-2926011:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2940089-2940172:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2945997-2946115:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2959966-2960112:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2960345-2960519:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2962847-2963107:1:exon

LOC116149619
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149619
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2883107..2893237
location: region:2883107-2893237:1
so has part: feature:2883107-2893237:1:exon
subclass of: SO_0000011

116149619
type: Gene
SIO_000068: ncbigene

position:2883107:1
position: 2883107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2893237:1
position: 2893237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2883107-2893237:1:exon

LOC116149619
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149619
product: uncharacterized LOC116149619
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133222.1
SIO_010081: LOC116149619
subclass of: SO_0000673
so part of: LOC116149619
location: join(2883107..2883244,2883349..2883354,2893226..2893237)
location: region:2883107-2893237:1
so has part: feature:2883107-2883244:1:exon
so has part: feature:2883349-2883354:1:exon
so has part: feature:2893226-2893237:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2883107-2883244:1:exon

position:2883244:1
position: 2883244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2883349-2883354:1:exon

position:2883349:1
position: 2883349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2883354:1
position: 2883354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2893226-2893237:1:exon

position:2893226:1
position: 2893226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CPNE3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CPNE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2978424..3016884)
location: region:2978424-3016884:-1
so has part: feature:2978424-3016884:-1:exon
subclass of: SO_0000010

105088495
type: Gene
SIO_000068: ncbigene

position:2978424:-1
position: 2978424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3016884:-1
position: 3016884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2978424-3016884:-1:exon

CPNE3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CPNE3
product: copine 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031441399.1
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: complement(join(2978424..2982178,2984080..2984316,2985406..2985539,2988709..2988760,2988843..2988897,2992649..2992782,2993324..2993383,2994262..2994348,2997305..2997403,3000699..3000788,3001691..3001774,3003497..3003568,3004880..3004954,3006529..3006708,3006986..3007125,3016866..3016884))
location: region:2978424-3016884:-1
so has part: feature:3016866-3016884:-1:exon
so has part: feature:3006986-3007125:-1:exon
so has part: feature:3006529-3006708:-1:exon
so has part: feature:3004880-3004954:-1:exon
so has part: feature:3003497-3003568:-1:exon
so has part: feature:3001691-3001774:-1:exon
so has part: feature:3000699-3000788:-1:exon
so has part: feature:2997305-2997403:-1:exon
so has part: feature:2994262-2994348:-1:exon
so has part: feature:2993324-2993383:-1:exon
so has part: feature:2992649-2992782:-1:exon
so has part: feature:2988843-2988897:-1:exon
so has part: feature:2988709-2988760:-1:exon
so has part: feature:2985406-2985539:-1:exon
so has part: feature:2984080-2984316:-1:exon
so has part: feature:2978424-2982178:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3016866-3016884:-1:exon

position:3016866:-1
position: 3016866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3006986-3007125:-1:exon

position:3006986:-1
position: 3006986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3007125:-1
position: 3007125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3006529-3006708:-1:exon

position:3006529:-1
position: 3006529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3006708:-1
position: 3006708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3004880-3004954:-1:exon

position:3004880:-1
position: 3004880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3004954:-1
position: 3004954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3003497-3003568:-1:exon

position:3003497:-1
position: 3003497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3003568:-1
position: 3003568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3001691-3001774:-1:exon

position:3001691:-1
position: 3001691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3001774:-1
position: 3001774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3000699-3000788:-1:exon

position:3000699:-1
position: 3000699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3000788:-1
position: 3000788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2997305-2997403:-1:exon

position:2997305:-1
position: 2997305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2997403:-1
position: 2997403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2994262-2994348:-1:exon

position:2994262:-1
position: 2994262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2994348:-1
position: 2994348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2993324-2993383:-1:exon

position:2993324:-1
position: 2993324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2993383:-1
position: 2993383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2992649-2992782:-1:exon

position:2992649:-1
position: 2992649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2992782:-1
position: 2992782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2988843-2988897:-1:exon

position:2988843:-1
position: 2988843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2988897:-1
position: 2988897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2988709-2988760:-1:exon

position:2988709:-1
position: 2988709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2988760:-1
position: 2988760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2985406-2985539:-1:exon

position:2985406:-1
position: 2985406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2985539:-1
position: 2985539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2984080-2984316:-1:exon

position:2984080:-1
position: 2984080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2984316:-1
position: 2984316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2978424-2982178:-1:exon

position:2982178:-1
position: 2982178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CPNE3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CPNE3
product: copine 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_010979352.2
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: complement(join(2978424..2982178,2984080..2984316,2985406..2985539,2988709..2988760,2988843..2988897,2992649..2992782,2993324..2993383,2994262..2994348,2997305..2997403,3000699..3000788,3001691..3001774,3003497..3003568,3004880..3004954,3006529..3006708,3006986..3007125,3013936..3014066))
location: region:2978424-3014066:-1
so has part: feature:3013936-3014066:-1:exon
so has part: feature:3006986-3007125:-1:exon
so has part: feature:3006529-3006708:-1:exon
so has part: feature:3004880-3004954:-1:exon
so has part: feature:3003497-3003568:-1:exon
so has part: feature:3001691-3001774:-1:exon
so has part: feature:3000699-3000788:-1:exon
so has part: feature:2997305-2997403:-1:exon
so has part: feature:2994262-2994348:-1:exon
so has part: feature:2993324-2993383:-1:exon
so has part: feature:2992649-2992782:-1:exon
so has part: feature:2988843-2988897:-1:exon
so has part: feature:2988709-2988760:-1:exon
so has part: feature:2985406-2985539:-1:exon
so has part: feature:2984080-2984316:-1:exon
so has part: feature:2978424-2982178:-1:exon

position:3014066:-1
position: 3014066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3013936-3014066:-1:exon

position:3013936:-1
position: 3013936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3006986-3007125:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3006529-3006708:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3004880-3004954:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3003497-3003568:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3001691-3001774:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3000699-3000788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2997305-2997403:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2994262-2994348:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2993324-2993383:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2992649-2992782:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2988843-2988897:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2988709-2988760:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2985406-2985539:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2984080-2984316:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2978424-2982178:-1:exon

CPNE3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CPNE3
product: copine 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_010979353.2
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: complement(join(2978424..2982178,2984080..2984316,2985406..2985539,2988709..2988760,2988843..2988897,2992649..2992782,2993324..2993383,2994262..2994348,2997305..2997403,3000699..3000788,3001691..3001774,3003497..3003568,3004880..3004954,3006529..3006708,3006986..3007125,3012330..3012348))
location: region:2978424-3012348:-1
so has part: feature:3012330-3012348:-1:exon
so has part: feature:3006986-3007125:-1:exon
so has part: feature:3006529-3006708:-1:exon
so has part: feature:3004880-3004954:-1:exon
so has part: feature:3003497-3003568:-1:exon
so has part: feature:3001691-3001774:-1:exon
so has part: feature:3000699-3000788:-1:exon
so has part: feature:2997305-2997403:-1:exon
so has part: feature:2994262-2994348:-1:exon
so has part: feature:2993324-2993383:-1:exon
so has part: feature:2992649-2992782:-1:exon
so has part: feature:2988843-2988897:-1:exon
so has part: feature:2988709-2988760:-1:exon
so has part: feature:2985406-2985539:-1:exon
so has part: feature:2984080-2984316:-1:exon
so has part: feature:2978424-2982178:-1:exon

position:3012348:-1
position: 3012348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3012330-3012348:-1:exon

position:3012330:-1
position: 3012330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3006986-3007125:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3006529-3006708:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3004880-3004954:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3003497-3003568:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3001691-3001774:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3000699-3000788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2997305-2997403:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2994262-2994348:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2993324-2993383:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2992649-2992782:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2988843-2988897:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2988709-2988760:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2985406-2985539:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2984080-2984316:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2978424-2982178:-1:exon

CPNE3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CPNE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: copine-3
translation: MAAQCVTKVELNISCDNLLDADVGSKSDPLCVLFLNTSGQQWYEVDRTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKGASRNSPIEFECINEKKRQKKKSYKNSGIISVKQCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPRSPDSLHYISPNGVNEYLTAIWSVGLVVQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRACLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPAAQ
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: complement(join(2982068..2982178,2984080..2984316,2985406..2985539,2988709..2988760,2988843..2988897,2992649..2992782,2993324..2993383,2994262..2994348,2997305..2997403,3000699..3000788,3001691..3001774,3003497..3003568,3004880..3004954,3006529..3006708,3006986..3007117))
location: region:2982068-3007117:-1
so has part: feature:3006986-3007117:-1:exon
so has part: feature:3006529-3006708:-1:exon
so has part: feature:3004880-3004954:-1:exon
so has part: feature:3003497-3003568:-1:exon
so has part: feature:3001691-3001774:-1:exon
so has part: feature:3000699-3000788:-1:exon
so has part: feature:2997305-2997403:-1:exon
so has part: feature:2994262-2994348:-1:exon
so has part: feature:2993324-2993383:-1:exon
so has part: feature:2992649-2992782:-1:exon
so has part: feature:2988843-2988897:-1:exon
so has part: feature:2988709-2988760:-1:exon
so has part: feature:2985406-2985539:-1:exon
so has part: feature:2984080-2984316:-1:exon
so has part: feature:2982068-2982178:-1:exon

XP_031297259.1
type: Protein
SIO_000068: ncbiprotein

position:2982068:-1
position: 2982068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3007117:-1
position: 3007117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3006986-3007117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3006529-3006708:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3004880-3004954:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3003497-3003568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3001691-3001774:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3000699-3000788:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2997305-2997403:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2994262-2994348:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2993324-2993383:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2992649-2992782:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2988843-2988897:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2988709-2988760:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2985406-2985539:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2984080-2984316:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2982068-2982178:-1:exon

CPNE3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CPNE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: copine-3
translation: MAAQCVTKVELNISCDNLLDADVGSKSDPLCVLFLNTSGQQWYEVDRTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKGASRNSPIEFECINEKKRQKKKSYKNSGIISVKQCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPRSPDSLHYISPNGVNEYLTAIWSVGLVVQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRACLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPAAQ
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: complement(join(2982068..2982178,2984080..2984316,2985406..2985539,2988709..2988760,2988843..2988897,2992649..2992782,2993324..2993383,2994262..2994348,2997305..2997403,3000699..3000788,3001691..3001774,3003497..3003568,3004880..3004954,3006529..3006708,3006986..3007117))
location: region:2982068-3007117:-1
so has part: feature:3006986-3007117:-1:exon
so has part: feature:3006529-3006708:-1:exon
so has part: feature:3004880-3004954:-1:exon
so has part: feature:3003497-3003568:-1:exon
so has part: feature:3001691-3001774:-1:exon
so has part: feature:3000699-3000788:-1:exon
so has part: feature:2997305-2997403:-1:exon
so has part: feature:2994262-2994348:-1:exon
so has part: feature:2993324-2993383:-1:exon
so has part: feature:2992649-2992782:-1:exon
so has part: feature:2988843-2988897:-1:exon
so has part: feature:2988709-2988760:-1:exon
so has part: feature:2985406-2985539:-1:exon
so has part: feature:2984080-2984316:-1:exon
so has part: feature:2982068-2982178:-1:exon

XP_010977654.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3006986-3007117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3006529-3006708:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3004880-3004954:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3003497-3003568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3001691-3001774:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3000699-3000788:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2997305-2997403:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2994262-2994348:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2993324-2993383:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2992649-2992782:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2988843-2988897:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2988709-2988760:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2985406-2985539:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2984080-2984316:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2982068-2982178:-1:exon

CPNE3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CPNE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: copine-3
translation: MAAQCVTKVELNISCDNLLDADVGSKSDPLCVLFLNTSGQQWYEVDRTERIKNCLNPKFSKTFIIDYYFEVVQKLKFGIYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVLKNGRPAGKGSITISAEEIKDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVIKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKGASRNSPIEFECINEKKRQKKKSYKNSGIISVKQCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPRSPDSLHYISPNGVNEYLTAIWSVGLVVQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRACLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLPPKNPAAQ
SIO_010081: CPNE3
subclass of: SO_0000673
so part of: CPNE3
location: complement(join(2982068..2982178,2984080..2984316,2985406..2985539,2988709..2988760,2988843..2988897,2992649..2992782,2993324..2993383,2994262..2994348,2997305..2997403,3000699..3000788,3001691..3001774,3003497..3003568,3004880..3004954,3006529..3006708,3006986..3007117))
location: region:2982068-3007117:-1
so has part: feature:3006986-3007117:-1:exon
so has part: feature:3006529-3006708:-1:exon
so has part: feature:3004880-3004954:-1:exon
so has part: feature:3003497-3003568:-1:exon
so has part: feature:3001691-3001774:-1:exon
so has part: feature:3000699-3000788:-1:exon
so has part: feature:2997305-2997403:-1:exon
so has part: feature:2994262-2994348:-1:exon
so has part: feature:2993324-2993383:-1:exon
so has part: feature:2992649-2992782:-1:exon
so has part: feature:2988843-2988897:-1:exon
so has part: feature:2988709-2988760:-1:exon
so has part: feature:2985406-2985539:-1:exon
so has part: feature:2984080-2984316:-1:exon
so has part: feature:2982068-2982178:-1:exon

XP_010977655.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3006986-3007117:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3006529-3006708:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3004880-3004954:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3003497-3003568:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3001691-3001774:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3000699-3000788:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2997305-2997403:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2994262-2994348:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2993324-2993383:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2992649-2992782:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2988843-2988897:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2988709-2988760:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2985406-2985539:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2984080-2984316:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2982068-2982178:-1:exon

RMDN1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3020121..3044608
location: region:3020121-3044608:1
so has part: feature:3020121-3044608:1:exon
subclass of: SO_0000010

105088494
type: Gene
SIO_000068: ncbigene

position:3020121:1
position: 3020121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3044608:1
position: 3044608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020121-3044608:1:exon

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_031441400.1
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020121..3020396,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3043577..3044608)
location: region:3020121-3044608:1
so has part: feature:3020121-3020396:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3043577-3044608:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3020121-3020396:1:exon

position:3020396:1
position: 3020396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

position:3023346:1
position: 3023346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3023463:1
position: 3023463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

position:3027884:1
position: 3027884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3027980:1
position: 3027980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

position:3029640:1
position: 3029640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3029799:1
position: 3029799
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

position:3033955:1
position: 3033955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3034044:1
position: 3034044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3036883-3036938:1:exon

position:3036883:1
position: 3036883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3036938:1
position: 3036938
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3038261-3038348:1:exon

position:3038261:1
position: 3038261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3038348:1
position: 3038348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3039419-3039449:1:exon

position:3039419:1
position: 3039419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3039449:1
position: 3039449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3041769-3041902:1:exon

position:3041769:1
position: 3041769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3041902:1
position: 3041902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3043577-3044608:1:exon

position:3043577:1
position: 3043577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_010979351.2
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020121..3020396,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3039419..3039449,3041769..3041902,3042324..3042449)
location: region:3020121-3042449:1
so has part: feature:3020121-3020396:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042449:1:exon

position:3042449:1
position: 3042449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020121-3020396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3042324-3042449:1:exon

position:3042324:1
position: 3042324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_010979350.2
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020121..3020396,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3042324..3042445)
location: region:3020121-3042445:1
so has part: feature:3020121-3020396:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042445:1:exon

position:3042445:1
position: 3042445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020121-3020396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3042324-3042445:1:exon

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_031441402.1
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020212..3020365,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3042324..3042445)
location: region:3020212-3042445:1
so has part: feature:3020212-3020365:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042445:1:exon

position:3020212:1
position: 3020212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020212-3020365:1:exon

position:3020365:1
position: 3020365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3042324-3042445:1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X2
translation: MAVTVRLGRFLPLGRSSAAAPRLPTCAAGSRGRCVPWRPRGSEVMGNPGAFKRSLLFSALSYLGFETYQVISQAAVVHAAAKVFRIEEILEQADYLYESGETEKLYQLLSQYKESEDAELLWRLARASRDIAQLSGTSAEEKKLLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANSYIIKEHFEKAIELNPKDATSVHLMGIWCYTFAEMPWYQRRIAKMLFAAPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLRNKKLAAFWLTKAKDYPAHTEEDKQH
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020268..3020396,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3043577..3043582)
location: region:3020268-3043582:1
so has part: feature:3020268-3020396:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3043577-3043582:1:exon

XP_031297260.1
type: Protein
SIO_000068: ncbiprotein

position:3020268:1
position: 3020268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3043582:1
position: 3043582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020268-3020396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3043577-3043582:1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X1
translation: MAVTVRLGRFLPLGRSSAAAPRLPTCAAGSRGRCVPWRPRGSEVMGNPGAFKRSLLFSALSYLGFETYQVISQAAVVHAAAKVFRIEEILEQADYLYESGETEKLYQLLSQYKESEDAELLWRLARASRDIAQLSGTSAEEKKLLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANSYIIKEHFEKAIELNPKDATSVHLMGIWCYTFAEMPWYQRRIAKMLFAAPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLRNKKLAAFWLTKAKDYPAHTEEDKQVQTEAAQLLTGFSDKN
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020268..3020396,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3042324..3042374)
location: region:3020268-3042374:1
so has part: feature:3020268-3020396:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042374:1:exon

XP_010977652.1
type: Protein
SIO_000068: ncbiprotein

position:3042374:1
position: 3042374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3020268-3020396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3042324-3042374:1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X4
translation: MAVTVRLGRFLPLGRSSAAAPRLPTCAAGSRGRCVPWRPRGSEVMGNPGAFKRSLLFSALSYLGFETYQVISQAAVVHAAAKVFRIEEILEQADYLYESGETEKLYQLLSQYKESEDAELLWRLARASRDIAQLSGTSAEEKKLLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANSYIIKEHFEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLRNKKLAAFWLTKAKDYPAHTEEDKQVQTEAAQLLTGFSDKN
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020268..3020396,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3039419..3039449,3041769..3041902,3042324..3042374)
location: region:3020268-3042374:1
so has part: feature:3020268-3020396:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042374:1:exon

XP_010977653.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3020268-3020396:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3042324-3042374:1:exon

RMDN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RMDN1
product: regulator of microtubule dynamics 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_031441401.1
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3020365..3020493,3023346..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3042324..3042445)
location: region:3020365-3042445:1
so has part: feature:3020365-3020493:1:exon
so has part: feature:3023346-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042445:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3020365-3020493:1:exon

position:3020493:1
position: 3020493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3023346-3023463:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3042324-3042445:1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X3
translation: MGNPGAFKRSLLFSALSYLGFETYQVISQAAVVHAAAKVFRIEEILEQADYLYESGETEKLYQLLSQYKESEDAELLWRLARASRDIAQLSGTSAEEKKLLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANSYIIKEHFEKAIELNPKDATSVHLMGIWCYTFAEMPWYQRRIAKMLFAAPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLRNKKLAAFWLTKAKDYPAHTEEDKQVQTEAAQLLTGFSDKN
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3023349..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3042324..3042374)
location: region:3023349-3042374:1
so has part: feature:3023349-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042374:1:exon

XP_031297261.1
type: Protein
SIO_000068: ncbiprotein

position:3023349:1
position: 3023349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3023349-3023463:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3042324-3042374:1:exon

RMDN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RMDN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: regulator of microtubule dynamics protein 1 isoform X3
translation: MGNPGAFKRSLLFSALSYLGFETYQVISQAAVVHAAAKVFRIEEILEQADYLYESGETEKLYQLLSQYKESEDAELLWRLARASRDIAQLSGTSAEEKKLLVYEALEYAKRALEKNESSFAAHKWYAICISDVGDYEGIKAKIANSYIIKEHFEKAIELNPKDATSVHLMGIWCYTFAEMPWYQRRIAKMLFAAPPSSTYEEALGYFHRAEQVDPNFYSKNLLLLGKTYLKLRNKKLAAFWLTKAKDYPAHTEEDKQVQTEAAQLLTGFSDKN
SIO_010081: RMDN1
subclass of: SO_0000673
so part of: RMDN1
location: join(3023349..3023463,3027884..3027980,3029640..3029799,3033955..3034044,3036883..3036938,3038261..3038348,3039419..3039449,3041769..3041902,3042324..3042374)
location: region:3023349-3042374:1
so has part: feature:3023349-3023463:1:exon
so has part: feature:3027884-3027980:1:exon
so has part: feature:3029640-3029799:1:exon
so has part: feature:3033955-3034044:1:exon
so has part: feature:3036883-3036938:1:exon
so has part: feature:3038261-3038348:1:exon
so has part: feature:3039419-3039449:1:exon
so has part: feature:3041769-3041902:1:exon
so has part: feature:3042324-3042374:1:exon

XP_031297262.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3023349-3023463:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3027884-3027980:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3029640-3029799:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3033955-3034044:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3036883-3036938:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3038261-3038348:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3039419-3039449:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3041769-3041902:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3042324-3042374:1:exon

LOC105088571
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088571
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3025207..3027872
location: region:3025207-3027872:1
so has part: feature:3025207-3027872:1:exon

105088571
type: Gene
SIO_000068: ncbigene

position:3025207:1
position: 3025207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3027872:1
position: 3027872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3025207-3027872:1:exon

LOC105088571
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088571
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088571
subclass of: SO_0000673
so part of: LOC105088571
location: 3025207..3027872
location: region:3025207-3027872:1
so has part: feature:3025207-3027872:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3025207-3027872:1:exon

WWP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3048250..3133900)
location: region:3048250-3133900:-1
so has part: feature:3048250-3133900:-1:exon
subclass of: SO_0000010

105088497
type: Gene
SIO_000068: ncbigene

position:3048250:-1
position: 3048250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3133900:-1
position: 3133900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3048250-3133900:-1:exon

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_031441395.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048250..3048938,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106044,3113683..3113778,3117180..3117224,3133809..3133900))
location: region:3048250-3133900:-1
so has part: feature:3133809-3133900:-1:exon
so has part: feature:3117180-3117224:-1:exon
so has part: feature:3113683-3113778:-1:exon
so has part: feature:3105951-3106044:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048250-3048938:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3133809-3133900:-1:exon

position:3133809:-1
position: 3133809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3117180-3117224:-1:exon

position:3117180:-1
position: 3117180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3117224:-1
position: 3117224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3113683-3113778:-1:exon

position:3113683:-1
position: 3113683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3113778:-1
position: 3113778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3105951-3106044:-1:exon

position:3105951:-1
position: 3105951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3106044:-1
position: 3106044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3101859-3101997:-1:exon

position:3101859:-1
position: 3101859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3101997:-1
position: 3101997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3101120-3101244:-1:exon

position:3101120:-1
position: 3101120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3101244:-1
position: 3101244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3097665-3097802:-1:exon

position:3097665:-1
position: 3097665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3097802:-1
position: 3097802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3097505-3097571:-1:exon

position:3097505:-1
position: 3097505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3097571:-1
position: 3097571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3094597-3094781:-1:exon

position:3094597:-1
position: 3094597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3094781:-1
position: 3094781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3088275-3088611:-1:exon

position:3088275:-1
position: 3088275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3088611:-1
position: 3088611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3081069-3081164:-1:exon

position:3081069:-1
position: 3081069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3081164:-1
position: 3081164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3079402-3079576:-1:exon

position:3079402:-1
position: 3079402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3079576:-1
position: 3079576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3077038-3077092:-1:exon

position:3077038:-1
position: 3077038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3077092:-1
position: 3077092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3076869-3076953:-1:exon

position:3076869:-1
position: 3076869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3076953:-1
position: 3076953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3076616-3076744:-1:exon

position:3076616:-1
position: 3076616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3076744:-1
position: 3076744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3073690-3073765:-1:exon

position:3073690:-1
position: 3073690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3073765:-1
position: 3073765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3073511-3073582:-1:exon

position:3073511:-1
position: 3073511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3073582:-1
position: 3073582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3070715-3070803:-1:exon

position:3070715:-1
position: 3070715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3070803:-1
position: 3070803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3066864-3067023:-1:exon

position:3066864:-1
position: 3066864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3067023:-1
position: 3067023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3063173-3063306:-1:exon

position:3063173:-1
position: 3063173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3063306:-1
position: 3063306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3062941-3063081:-1:exon

position:3062941:-1
position: 3062941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3063081:-1
position: 3063081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:3062116-3062236:-1:exon

position:3062116:-1
position: 3062116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3062236:-1
position: 3062236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:3057435-3057539:-1:exon

position:3057435:-1
position: 3057435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3057539:-1
position: 3057539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:3054952-3055048:-1:exon

position:3054952:-1
position: 3054952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3055048:-1
position: 3055048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:3054472-3054544:-1:exon

position:3054472:-1
position: 3054472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3054544:-1
position: 3054544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:3048250-3048938:-1:exon

position:3048938:-1
position: 3048938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031441396.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048250..3048938,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106044,3113683..3113778,3133809..3133820))
location: region:3048250-3133820:-1
so has part: feature:3133809-3133820:-1:exon
so has part: feature:3113683-3113778:-1:exon
so has part: feature:3105951-3106044:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048250-3048938:-1:exon

position:3133820:-1
position: 3133820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3133809-3133820:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3113683-3113778:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3105951-3106044:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3097505-3097571:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3048250-3048938:-1:exon

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_031441397.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048839..3048938,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097568,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106044,3113683..3113778,3117180..3117224,3133809..3133878))
location: region:3048839-3133878:-1
so has part: feature:3133809-3133878:-1:exon
so has part: feature:3117180-3117224:-1:exon
so has part: feature:3113683-3113778:-1:exon
so has part: feature:3105951-3106044:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097568:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048839-3048938:-1:exon

position:3048839:-1
position: 3048839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3133878:-1
position: 3133878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3133809-3133878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3117180-3117224:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3113683-3113778:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3105951-3106044:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3097505-3097568:-1:exon

position:3097568:-1
position: 3097568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3048839-3048938:-1:exon

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X2
translation: MATASPRSDTSNGNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVVVDGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATIDLKQALLVHNRKLERVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNCSSSPAKIQQNGDALHENGEPSARTATRLAAEGTNGVDNHVPTGTVVQNSCCSYVVNGDSAPSSPSQVAARPKNTPAPKPLTSEPANDTVNGESSSSAPTGDASTAGTAGVAEETALSSNCISTAVEDPPVQEILASSENSECIHPNGAAFGSEARSALDPSTSNSGSSSASEAAKLRQPEGSVEPMRPQSANASTETLPSGWEQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCVEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048839..3048938,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097568,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106023))
location: region:3048839-3106023:-1
so has part: feature:3105951-3106023:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097568:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048839-3048938:-1:exon

XP_031297257.1
type: Protein
SIO_000068: ncbiprotein

position:3106023:-1
position: 3106023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3105951-3106023:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3097505-3097568:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3048839-3048938:-1:exon

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1
translation: MATASPRSDTSNGNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVVVDGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATIDLKQALLVHNRKLERVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNCSSSPAIEIQQNGDALHENGEPSARTATRLAAEGTNGVDNHVPTGTVVQNSCCSYVVNGDSAPSSPSQVAARPKNTPAPKPLTSEPANDTVNGESSSSAPTGDASTAGTAGVAEETALSSNCISTAVEDPPVQEILASSENSECIHPNGAAFGSEARSALDPSTSNSGSSSASEAAKLRQPEGSVEPMRPQSANASTETLPSGWEQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCVEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048839..3048938,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106023))
location: region:3048839-3106023:-1
so has part: feature:3105951-3106023:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048839-3048938:-1:exon

XP_031297255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3105951-3106023:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3097505-3097571:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3048839-3048938:-1:exon

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1
translation: MATASPRSDTSNGNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVVVDGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATIDLKQALLVHNRKLERVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNCSSSPAIEIQQNGDALHENGEPSARTATRLAAEGTNGVDNHVPTGTVVQNSCCSYVVNGDSAPSSPSQVAARPKNTPAPKPLTSEPANDTVNGESSSSAPTGDASTAGTAGVAEETALSSNCISTAVEDPPVQEILASSENSECIHPNGAAFGSEARSALDPSTSNSGSSSASEAAKLRQPEGSVEPMRPQSANASTETLPSGWEQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCVEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048839..3048938,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106023))
location: region:3048839-3106023:-1
so has part: feature:3105951-3106023:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048839-3048938:-1:exon

XP_031297256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3105951-3106023:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3097505-3097571:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3048839-3048938:-1:exon

WWP1
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_004133223.1
SIO_010081: WWP1
so part of: WWP1
location: complement(join(3048863..3048938,3054472..3054544,3054909..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106044,3113683..3113778,3117180..3117224,3133809..3133878))
location: region:3048863-3133878:-1
so has part: feature:3133809-3133878:-1:exon
so has part: feature:3117180-3117224:-1:exon
so has part: feature:3113683-3113778:-1:exon
so has part: feature:3105951-3106044:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054909-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048863-3048938:-1:exon

position:3048863:-1
position: 3048863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3133809-3133878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3117180-3117224:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3113683-3113778:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3105951-3106044:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3097505-3097571:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3054909-3055048:-1:exon

position:3054909:-1
position: 3054909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3048863-3048938:-1:exon

WWP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: WWP1
product: WW domain containing E3 ubiquitin protein ligase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_031441398.1
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3048990..3053619,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106044,3113683..3113778,3117180..3117224,3133809..3133878))
location: region:3048990-3133878:-1
so has part: feature:3133809-3133878:-1:exon
so has part: feature:3117180-3117224:-1:exon
so has part: feature:3113683-3113778:-1:exon
so has part: feature:3105951-3106044:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3048990-3053619:-1:exon

position:3048990:-1
position: 3048990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3133809-3133878:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3117180-3117224:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3113683-3113778:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3105951-3106044:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3097505-3097571:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3048990-3053619:-1:exon

position:3053619:-1
position: 3053619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

WWP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: WWP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X3
translation: MATASPRSDTSNGNHSGRLQLQVTVSSAKLKRKKNWFGTAIYTEVVVDGESKKTAKSSSSSNPKWDEQLTVNVTPQTTLEFRVWSHHTLKADALLGRATIDLKQALLVHNRKLERVKEQLKLSLETKNGVVQTGELTVVLDGLVIEQENITNCSSSPAIEIQQNGDALHENGEPSARTATRLAAEGTNGVDNHVPTGTVVQNSCCSYVVNGDSAPSSPSQVAARPKNTPAPKPLTSEPANDTVNGESSSSAPTGDASTAGTAGVAEETALSSNCISTAVEDPPVQEILASSENSECIHPNGAAFGSEARSALDPSTSNSGSSSASEAAKLRQPEGSVEPMRPQSANASTETLPSGWEQRKDPHGRTYYVDHNTRTTTWERPQPLPPGWERRVDDRGRVYYVDHNTRTTTWQRPTMESVRNFEQWQSQRSQLQGAMQQFNQRYLYSASMLAAENDPYGPLPPGWEKRVDSTDRVYFVNHNTKTTQWEDPRTQGLQNEEPLPEGWEIRYTREGVRYFVDHNTRTTTFKDPRNGKSSVTKGGPQIAYERSFRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCVEKVGKDTWLPRSHT
SIO_010081: WWP1
subclass of: SO_0000673
so part of: WWP1
location: complement(join(3053619,3054472..3054544,3054952..3055048,3057435..3057539,3062116..3062236,3062941..3063081,3063173..3063306,3066864..3067023,3070715..3070803,3073511..3073582,3073690..3073765,3076616..3076744,3076869..3076953,3077038..3077092,3079402..3079576,3081069..3081164,3088275..3088611,3094597..3094781,3097505..3097571,3097665..3097802,3101120..3101244,3101859..3101997,3105951..3106023))
location: region:3053619-3106023:-1
so has part: feature:3105951-3106023:-1:exon
so has part: feature:3101859-3101997:-1:exon
so has part: feature:3101120-3101244:-1:exon
so has part: feature:3097665-3097802:-1:exon
so has part: feature:3097505-3097571:-1:exon
so has part: feature:3094597-3094781:-1:exon
so has part: feature:3088275-3088611:-1:exon
so has part: feature:3081069-3081164:-1:exon
so has part: feature:3079402-3079576:-1:exon
so has part: feature:3077038-3077092:-1:exon
so has part: feature:3076869-3076953:-1:exon
so has part: feature:3076616-3076744:-1:exon
so has part: feature:3073690-3073765:-1:exon
so has part: feature:3073511-3073582:-1:exon
so has part: feature:3070715-3070803:-1:exon
so has part: feature:3066864-3067023:-1:exon
so has part: feature:3063173-3063306:-1:exon
so has part: feature:3062941-3063081:-1:exon
so has part: feature:3062116-3062236:-1:exon
so has part: feature:3057435-3057539:-1:exon
so has part: feature:3054952-3055048:-1:exon
so has part: feature:3054472-3054544:-1:exon
so has part: feature:3053619-3053619:-1:exon

XP_031297258.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3105951-3106023:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3101859-3101997:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3101120-3101244:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3097665-3097802:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3097505-3097571:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3094597-3094781:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3088275-3088611:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3081069-3081164:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3079402-3079576:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3077038-3077092:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3076869-3076953:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3076616-3076744:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3073690-3073765:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3073511-3073582:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3070715-3070803:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3066864-3067023:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3063173-3063306:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3062941-3063081:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3062116-3062236:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3057435-3057539:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3054952-3055048:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3054472-3054544:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3053619-3053619:-1:exon

LOC105088575
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088575
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3107121..3108533
location: region:3107121-3108533:1
so has part: feature:3107121-3108533:1:exon

105088575
type: Gene
SIO_000068: ncbigene

position:3107121:1
position: 3107121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3108533:1
position: 3108533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3107121-3108533:1:exon

LOC105088575
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088575
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088575
subclass of: SO_0000673
so part of: LOC105088575
location: 3107121..3107259
location: region:3107121-3107259:1
so has part: feature:3107121-3107259:1:exon

position:3107259:1
position: 3107259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3107121-3107259:1:exon

LOC105088575
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088575
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 15% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088575
subclass of: SO_0000673
so part of: LOC105088575
location: 3107729..3108533
location: region:3107729-3108533:1
so has part: feature:3107729-3108533:1:exon

position:3107729:1
position: 3107729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3107729-3108533:1:exon

LOC105088498
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088498
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3151990..3158042
location: region:3151990-3158042:1
so has part: feature:3151990-3158042:1:exon
subclass of: SO_0000011

105088498
type: Gene
SIO_000068: ncbigene

position:3151990:1
position: 3151990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3158042:1
position: 3158042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3151990-3158042:1:exon

LOC105088498
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088498
product: uncharacterized LOC105088498
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_004133224.1
SIO_010081: LOC105088498
subclass of: SO_0000673
so part of: LOC105088498
location: join(3151990..3152364,3153490..3153636,3154928..3158042)
location: region:3151990-3158042:1
so has part: feature:3151990-3152364:1:exon
so has part: feature:3153490-3153636:1:exon
so has part: feature:3154928-3158042:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3151990-3152364:1:exon

position:3152364:1
position: 3152364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3153490-3153636:1:exon

position:3153490:1
position: 3153490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3153636:1
position: 3153636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3154928-3158042:1:exon

position:3154928:1
position: 3154928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149694
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149694
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(3191072..3191230)
location: region:3191072-3191230:-1
so has part: feature:3191072-3191230:-1:exon
subclass of: SO_0000623

116149694
type: Gene
SIO_000068: ncbigene

position:3191072:-1
position: 3191072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3191230:-1
position: 3191230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3191072-3191230:-1:exon

LOC116149694
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149694
product: U1 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00003
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133335.1
SIO_010081: LOC116149694
subclass of: SO_0000673
so part of: LOC116149694
location: complement(3191072..3191230)
location: region:3191072-3191230:-1
so has part: feature:3191072-3191230:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3191072-3191230:-1:exon

LOC105088576
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088576
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3191165..3209958
location: region:3191165-3209958:1
so has part: feature:3191165-3209958:1:exon
subclass of: SO_0000010

105088576
type: Gene
SIO_000068: ncbigene

position:3191165:1
position: 3191165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3209958:1
position: 3209958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3191165-3209958:1:exon

LOC105088576
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088576
product: solute carrier family 7 member 13
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 40% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441378.1
SIO_010081: LOC105088576
subclass of: SO_0000673
so part of: LOC105088576
location: join(3191165..3191222,3209281..3209958)
location: region:3191165-3209958:1
so has part: feature:3191165-3191222:1:exon
so has part: feature:3209281-3209958:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3191165-3191222:1:exon

position:3191222:1
position: 3191222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3209281-3209958:1:exon

position:3209281:1
position: 3209281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088576
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088576
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; substituted 4 bases at 4 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:3209641..3209643,aa:OTHER)
transl except: (pos:3209797..3209799,aa:OTHER)
transl except: (pos:3209806..3209808,aa:OTHER)
transl except: (pos:3209845..3209847,aa:OTHER)
product: LOW QUALITY PROTEIN: solute carrier family 7 member 13
translation: MDEPHPGKTTFVIMVSPLPVDEKKIQLQRTFGSCWGVSFSLLXVIGAGISVAPGGVPKSCANXGLSLCTWAGCALLSRMAPLCSAEMRVTFPCRGAHYHFLKRCFGNLISFLNLWTALFLRPGLAASRALLLAEYSIQPFXPSCSAAKLPKKCLALAALRTVGILNSRGVKEVTWLQTTSTTLKWSYSALIPXVAXCCWWGKQNVDIFXNLFNAEFPEASRFIDAIFLGYFAYSGGGCVTFIAGN
SIO_010081: LOC105088576
subclass of: SO_0000673
so part of: LOC105088576
location: join(3191165..3191222,3209281..3209958)
location: region:3191165-3209958:1
so has part: feature:3191165-3191222:1:exon
so has part: feature:3209281-3209958:1:exon

XP_031297238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3191165-3191222:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3209281-3209958:1:exon

ATP6V0D2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ATP6V0D2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<3248411..3298303)
location: region:3248411-3298303:-1
so has part: feature:3248411-3298303:-1:exon
subclass of: SO_0000010

105088499
type: Gene
SIO_000068: ncbigene

position:3248411:-1
position: 3248411
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:3298303:-1
position: 3298303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3248411-3298303:-1:exon

ATP6V0D2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ATP6V0D2
product: ATPase H+ transporting V0 subunit d2
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01042007.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 215 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_010979357.2
SIO_010081: ATP6V0D2
subclass of: SO_0000673
so part of: ATP6V0D2
location: complement(join(<3248411..3248580,3250195..3250272,3251513..3251689,3258798..3258875,3260289..3260368,3261545..3261723,3284877..3285048,3297894..3298303))
location: region:3248411-3298303:-1
so has part: feature:3297894-3298303:-1:exon
so has part: feature:3284877-3285048:-1:exon
so has part: feature:3261545-3261723:-1:exon
so has part: feature:3260289-3260368:-1:exon
so has part: feature:3258798-3258875:-1:exon
so has part: feature:3251513-3251689:-1:exon
so has part: feature:3250195-3250272:-1:exon
so has part: feature:3248411-3248580:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3297894-3298303:-1:exon

position:3297894:-1
position: 3297894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3284877-3285048:-1:exon

position:3284877:-1
position: 3284877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3285048:-1
position: 3285048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3261545-3261723:-1:exon

position:3261545:-1
position: 3261545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3261723:-1
position: 3261723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3260289-3260368:-1:exon

position:3260289:-1
position: 3260289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3260368:-1
position: 3260368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3258798-3258875:-1:exon

position:3258798:-1
position: 3258798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3258875:-1
position: 3258875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3251513-3251689:-1:exon

position:3251513:-1
position: 3251513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3251689:-1
position: 3251689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3250195-3250272:-1:exon

position:3250195:-1
position: 3250195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3250272:-1
position: 3250272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3248411-3248580:-1:exon

position:3248580:-1
position: 3248580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP6V0D2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ATP6V0D2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: V-type proton ATPase subunit d 2
translation: MLEGAELCFNVDHGYLEGLVRGCKAGLLTQQDYINLVQCETLEDLKIHLQTTDYGNFLANQTSPLTVSTIDTEMRKKLCREFEYFRNHSLEPLSTFFTYMTCSYMIDNVILLMNGALQKKSVKEMLVKCHPLGRFTEMEAVNIAETPSELFNAILVETPLAPFFQDCMSENTLDELNIEILRNKLYKSYIEAFYKFCKNHGDVTAEIMCPILEFEADRRAFIITLNSFGTELSKEDRETLYPTCGKLYPEGLRLLAQAEDFEQMKRVADHYGVYKPLFEAVGDGSGAKTLEDVFYEREVQMNVLAFNRQFHYGVFYAYTKLKEQEMRNVVWIAECISQRHRAKINSYIPIL
SIO_010081: ATP6V0D2
subclass of: SO_0000673
so part of: ATP6V0D2
location: complement(join(3248419..3248580,3250195..3250272,3251513..3251689,3258798..3258875,3260289..3260368,3261545..3261723,3284877..3285048,3297894..3298023))
location: region:3248419-3298023:-1
so has part: feature:3297894-3298023:-1:exon
so has part: feature:3284877-3285048:-1:exon
so has part: feature:3261545-3261723:-1:exon
so has part: feature:3260289-3260368:-1:exon
so has part: feature:3258798-3258875:-1:exon
so has part: feature:3251513-3251689:-1:exon
so has part: feature:3250195-3250272:-1:exon
so has part: feature:3248419-3248580:-1:exon

XP_010977659.1
type: Protein
SIO_000068: ncbiprotein

position:3248419:-1
position: 3248419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3298023:-1
position: 3298023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3297894-3298023:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3284877-3285048:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3261545-3261723:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3260289-3260368:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3258798-3258875:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3251513-3251689:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3250195-3250272:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3248419-3248580:-1:exon

PSKH2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: PSKH2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3312091..3324076
location: region:3312091-3324076:1
so has part: feature:3312091-3324076:1:exon
subclass of: SO_0000010

105088500
type: Gene
SIO_000068: ncbigene

position:3312091:1
position: 3312091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3324076:1
position: 3324076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3312091-3324076:1:exon

PSKH2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PSKH2
product: protein serine kinase H2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 4 bases in 4 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010979362.2
SIO_010081: PSKH2
subclass of: SO_0000673
so part of: PSKH2
location: join(3312091..3312273,3316366..3317025,3323790..3324076)
location: region:3312091-3324076:1
so has part: feature:3312091-3312273:1:exon
so has part: feature:3316366-3317025:1:exon
so has part: feature:3323790-3324076:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3312091-3312273:1:exon

position:3312273:1
position: 3312273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3316366-3317025:1:exon

position:3316366:1
position: 3316366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3317025:1
position: 3317025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3323790-3324076:1:exon

position:3323790:1
position: 3323790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PSKH2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PSKH2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 4 bases in 4 codons; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:3316559..3316561,aa:OTHER)
transl except: (pos:3316611..3316613,aa:OTHER)
product: LOW QUALITY PROTEIN: serine/threonine-protein kinase H2
translation: MRCGASRKVILEPPAAAPIQGEGQGQGSWVVGPGPEAATKAAGRMQGAQFQAKFHPRGLSRYDIKALISKAVRVEQKTTKKPFAMKVMETRMREGRVVCESELTILWRVSRLDSVQLMEIFEVQGXVSIVMELMATGGELFDXLLTQGSTTEQDAVRTLQMVADGIRYLHALRITHKDLKLENRLYYHPGAKSEILITDFGXTQSGHKSGAWTMRALCRTPDYIAPEVLLRKPYPGAVDTWALGILIMYVSLSGFPPCDDESHMRLYREILNGKYNYMGEPSHLAKDFIDKLLILEAGHRMSAGQALDQPWVITMAAGATTKKLQKVVSQNLMKKXPHSQSPASAQSSKSPSYYKSRFTWSKGNLMVEESPLSSL
SIO_010081: PSKH2
subclass of: SO_0000673
so part of: PSKH2
location: join(3312091..3312273,3316366..3317025,3323790..3324076)
location: region:3312091-3324076:1
so has part: feature:3312091-3312273:1:exon
so has part: feature:3316366-3317025:1:exon
so has part: feature:3323790-3324076:1:exon

XP_010977664.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3312091-3312273:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3316366-3317025:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3323790-3324076:1:exon

LOC105088577
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088577
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3453262..3454009
location: region:3453262-3454009:1
so has part: feature:3453262-3454009:1:exon

105088577
type: Gene
SIO_000068: ncbigene

position:3453262:1
position: 3453262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3454009:1
position: 3454009
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3453262-3454009:1:exon

LOC105088577
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088577
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088577
subclass of: SO_0000673
so part of: LOC105088577
location: 3453262..3454009
location: region:3453262-3454009:1
so has part: feature:3453262-3454009:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3453262-3454009:1:exon

LOC105088501
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088501
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(3454179..3454824)
location: region:3454179-3454824:-1
so has part: feature:3454179-3454824:-1:exon

105088501
type: Gene
SIO_000068: ncbigene

position:3454179:-1
position: 3454179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3454824:-1
position: 3454824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3454179-3454824:-1:exon

LOC105088501
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088501
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
pseudo: true
SIO_010081: LOC105088501
subclass of: SO_0000673
so part of: LOC105088501
location: complement(3454179..3454824)
location: region:3454179-3454824:-1
so has part: feature:3454179-3454824:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3454179-3454824:-1:exon

LOC116149603
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149603
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3460716..3479410)
location: region:3460716-3479410:-1
so has part: feature:3460716-3479410:-1:exon
subclass of: SO_0000011

116149603
type: Gene
SIO_000068: ncbigene

position:3460716:-1
position: 3460716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3479410:-1
position: 3479410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3460716-3479410:-1:exon

LOC116149603
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149603
product: uncharacterized LOC116149603
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_004133203.1
SIO_010081: LOC116149603
subclass of: SO_0000673
so part of: LOC116149603
location: complement(join(3460716..3460725,3477073..3477079,3479294..3479410))
location: region:3460716-3479410:-1
so has part: feature:3479294-3479410:-1:exon
so has part: feature:3477073-3477079:-1:exon
so has part: feature:3460716-3460725:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3479294-3479410:-1:exon

position:3479294:-1
position: 3479294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3477073-3477079:-1:exon

position:3477073:-1
position: 3477073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3477079:-1
position: 3477079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3460716-3460725:-1:exon

position:3460725:-1
position: 3460725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149684
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149684
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(3471738..3471844)
location: region:3471738-3471844:-1
so has part: feature:3471738-3471844:-1:exon
subclass of: SO_0000623

116149684
type: Gene
SIO_000068: ncbigene

position:3471738:-1
position: 3471738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3471844:-1
position: 3471844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3471738-3471844:-1:exon

LOC116149684
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149684
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133326.1
SIO_010081: LOC116149684
subclass of: SO_0000673
so part of: LOC116149684
location: complement(3471738..3471844)
location: region:3471738-3471844:-1
so has part: feature:3471738-3471844:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3471738-3471844:-1:exon

LOC116149621
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149621
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3618347..3632600
location: region:3618347-3632600:1
so has part: feature:3618347-3632600:1:exon
subclass of: SO_0000011

116149621
type: Gene
SIO_000068: ncbigene

position:3618347:1
position: 3618347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3632600:1
position: 3632600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3618347-3632600:1:exon

LOC116149621
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149621
product: uncharacterized LOC116149621
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133226.1
SIO_010081: LOC116149621
subclass of: SO_0000673
so part of: LOC116149621
location: join(3618347..3618686,3631097..3631200,3632466..3632600)
location: region:3618347-3632600:1
so has part: feature:3618347-3618686:1:exon
so has part: feature:3631097-3631200:1:exon
so has part: feature:3632466-3632600:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3618347-3618686:1:exon

position:3618686:1
position: 3618686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3631097-3631200:1:exon

position:3631097:1
position: 3631097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3631200:1
position: 3631200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3632466-3632600:1:exon

position:3632466:1
position: 3632466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CA2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3621573..3635827)
location: region:3621573-3635827:-1
so has part: feature:3621573-3635827:-1:exon
subclass of: SO_0000010

105088502
type: Gene
SIO_000068: ncbigene

position:3621573:-1
position: 3621573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3635827:-1
position: 3635827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3621573-3635827:-1:exon

CA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CA2
product: carbonic anhydrase 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_031441403.1
SIO_010081: CA2
subclass of: SO_0000673
so part of: CA2
location: complement(join(3621573..3622370,3623713..3623871,3625791..3625853,3626891..3626983,3627450..3627568,3634390..3634587,3635672..3635827))
location: region:3621573-3635827:-1
so has part: feature:3635672-3635827:-1:exon
so has part: feature:3634390-3634587:-1:exon
so has part: feature:3627450-3627568:-1:exon
so has part: feature:3626891-3626983:-1:exon
so has part: feature:3625791-3625853:-1:exon
so has part: feature:3623713-3623871:-1:exon
so has part: feature:3621573-3622370:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3635672-3635827:-1:exon

position:3635672:-1
position: 3635672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3634390-3634587:-1:exon

position:3634390:-1
position: 3634390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3634587:-1
position: 3634587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3627450-3627568:-1:exon

position:3627450:-1
position: 3627450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3627568:-1
position: 3627568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3626891-3626983:-1:exon

position:3626891:-1
position: 3626891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3626983:-1
position: 3626983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3625791-3625853:-1:exon

position:3625791:-1
position: 3625791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3625853:-1
position: 3625853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3623713-3623871:-1:exon

position:3623713:-1
position: 3623713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3623871:-1
position: 3623871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3621573-3622370:-1:exon

position:3622370:-1
position: 3622370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 2
translation: MSHHWGYGKHHGPEHWHKDFPNAKGDRQSPVDFDTKAVVYDPSLKPLSVRYDQATSRRIVNNGHSFNVEFDDSQDKAVLEGGPLTGTYRLAHFHFHWGSSDGQGSEHSVDKKKYAAELHFVHWNTKYGDFGKAVQQPDGLAVLGIFLKIGDAKPGLQKVVDALGAIKTKGQSADFTNFDPRGLLPQNLASYWTYPGSLTTPPLQESVIWIVLKEPIAVSSEQVAKFRTLSFSAGGEPEDPMVDNWRPTQPLKGRQVRASFQ
SIO_010081: CA2
subclass of: SO_0000673
so part of: CA2
location: complement(join(3622251..3622370,3623713..3623871,3625791..3625853,3626891..3626983,3627450..3627568,3634390..3634587,3635672..3635705))
location: region:3622251-3635705:-1
so has part: feature:3635672-3635705:-1:exon
so has part: feature:3634390-3634587:-1:exon
so has part: feature:3627450-3627568:-1:exon
so has part: feature:3626891-3626983:-1:exon
so has part: feature:3625791-3625853:-1:exon
so has part: feature:3623713-3623871:-1:exon
so has part: feature:3622251-3622370:-1:exon

XP_031297263.1
type: Protein
SIO_000068: ncbiprotein

position:3622251:-1
position: 3622251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3635705:-1
position: 3635705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3635672-3635705:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3634390-3634587:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3627450-3627568:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3626891-3626983:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3625791-3625853:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3623713-3623871:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3622251-3622370:-1:exon

CA3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3650755..3660484)
location: region:3650755-3660484:-1
so has part: feature:3650755-3660484:-1:exon
subclass of: SO_0000010

105088504
type: Gene
SIO_000068: ncbigene

position:3650755:-1
position: 3650755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3660484:-1
position: 3660484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3650755-3660484:-1:exon

CA3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CA3
product: carbonic anhydrase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 mRNAs, 30 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_031441404.1
SIO_010081: CA3
subclass of: SO_0000673
so part of: CA3
location: complement(join(3650755..3651725,3652658..3652813,3653905..3653967,3655100..3655192,3657049..3657167,3659355..3659552,3660244..3660484))
location: region:3650755-3660484:-1
so has part: feature:3660244-3660484:-1:exon
so has part: feature:3659355-3659552:-1:exon
so has part: feature:3657049-3657167:-1:exon
so has part: feature:3655100-3655192:-1:exon
so has part: feature:3653905-3653967:-1:exon
so has part: feature:3652658-3652813:-1:exon
so has part: feature:3650755-3651725:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3660244-3660484:-1:exon

position:3660244:-1
position: 3660244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3659355-3659552:-1:exon

position:3659355:-1
position: 3659355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3659552:-1
position: 3659552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3657049-3657167:-1:exon

position:3657049:-1
position: 3657049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3657167:-1
position: 3657167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3655100-3655192:-1:exon

position:3655100:-1
position: 3655100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3655192:-1
position: 3655192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3653905-3653967:-1:exon

position:3653905:-1
position: 3653905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3653967:-1
position: 3653967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3652658-3652813:-1:exon

position:3652658:-1
position: 3652658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3652813:-1
position: 3652813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3650755-3651725:-1:exon

position:3651725:-1
position: 3651725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CA3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CA3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 3
translation: MAKEWGYASHNGPDHWHELYPIAKGDNQSPIELHTKDISHDPSLLPWTAAYDPGSAKTILNNGKTCRVVFDDTYDRSMLRGGPLTGAYRLRQFHLHWGSSDDHGSEHIVDGVKYAAELHLVHWNSKYNSFASALKKPDGVAVIGIFLKIGREKGEFQLFLDALDKIKTKGKEAPFTNFNPSSLFPACRDYWTYQGSFTTPPCEECIVWILLKEPITVSSDQMAKLRSLYASAENEPPVPLMGNWRPPQPLKGRVVKASFK
SIO_010081: CA3
subclass of: SO_0000673
so part of: CA3
location: complement(join(3651606..3651725,3652658..3652813,3653905..3653967,3655100..3655192,3657049..3657167,3659355..3659552,3660244..3660277))
location: region:3651606-3660277:-1
so has part: feature:3660244-3660277:-1:exon
so has part: feature:3659355-3659552:-1:exon
so has part: feature:3657049-3657167:-1:exon
so has part: feature:3655100-3655192:-1:exon
so has part: feature:3653905-3653967:-1:exon
so has part: feature:3652658-3652813:-1:exon
so has part: feature:3651606-3651725:-1:exon

XP_031297264.1
type: Protein
SIO_000068: ncbiprotein

position:3651606:-1
position: 3651606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3660277:-1
position: 3660277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3660244-3660277:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3659355-3659552:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3657049-3657167:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3655100-3655192:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3653905-3653967:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3652658-3652813:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3651606-3651725:-1:exon

LOC116149620
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149620
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3659850..3672739
location: region:3659850-3672739:1
so has part: feature:3659850-3672739:1:exon
subclass of: SO_0000011

116149620
type: Gene
SIO_000068: ncbigene

position:3659850:1
position: 3659850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3672739:1
position: 3672739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3659850-3672739:1:exon

LOC116149620
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149620
product: uncharacterized LOC116149620
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004133225.1
SIO_010081: LOC116149620
subclass of: SO_0000673
so part of: LOC116149620
location: join(3659850..3660144,3669538..3669766,3670298..3672739)
location: region:3659850-3672739:1
so has part: feature:3659850-3660144:1:exon
so has part: feature:3669538-3669766:1:exon
so has part: feature:3670298-3672739:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3659850-3660144:1:exon

position:3660144:1
position: 3660144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3669538-3669766:1:exon

position:3669538:1
position: 3669538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3669766:1
position: 3669766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3670298-3672739:1:exon

position:3670298:1
position: 3670298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CA1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3699850..3744309
location: region:3699850-3744309:1
so has part: feature:3699850-3744309:1:exon
subclass of: SO_0000010

105088505
type: Gene
SIO_000068: ncbigene

position:3699850:1
position: 3699850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3744309:1
position: 3744309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3699850-3744309:1:exon

CA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CA1
product: carbonic anhydrase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 34 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031441405.1
SIO_010081: CA1
subclass of: SO_0000673
so part of: CA1
location: join(3699850..3699924,3734006..3734066,3735198..3735395,3736888..3737006,3739047..3739142,3740021..3740083,3742725..3742880,3743863..3744309)
location: region:3699850-3744309:1
so has part: feature:3699850-3699924:1:exon
so has part: feature:3734006-3734066:1:exon
so has part: feature:3735198-3735395:1:exon
so has part: feature:3736888-3737006:1:exon
so has part: feature:3739047-3739142:1:exon
so has part: feature:3740021-3740083:1:exon
so has part: feature:3742725-3742880:1:exon
so has part: feature:3743863-3744309:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3699850-3699924:1:exon

position:3699924:1
position: 3699924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3734006-3734066:1:exon

position:3734006:1
position: 3734006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3734066:1
position: 3734066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3735198-3735395:1:exon

position:3735198:1
position: 3735198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3735395:1
position: 3735395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3736888-3737006:1:exon

position:3736888:1
position: 3736888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3737006:1
position: 3737006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3739047-3739142:1:exon

position:3739047:1
position: 3739047
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3739142:1
position: 3739142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3740021-3740083:1:exon

position:3740021:1
position: 3740021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3740083:1
position: 3740083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3742725-3742880:1:exon

position:3742725:1
position: 3742725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3742880:1
position: 3742880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3743863-3744309:1:exon

position:3743863:1
position: 3743863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149622
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3714283..3722445)
location: region:3714283-3722445:-1
so has part: feature:3714283-3722445:-1:exon
subclass of: SO_0000011

116149622
type: Gene
SIO_000068: ncbigene

position:3714283:-1
position: 3714283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3722445:-1
position: 3722445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3714283-3722445:-1:exon

LOC116149622
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149622
product: uncharacterized LOC116149622
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133227.1
SIO_010081: LOC116149622
subclass of: SO_0000673
so part of: LOC116149622
location: complement(join(3714283..3715709,3717092..3717241,3722326..3722445))
location: region:3714283-3722445:-1
so has part: feature:3722326-3722445:-1:exon
so has part: feature:3717092-3717241:-1:exon
so has part: feature:3714283-3715709:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3722326-3722445:-1:exon

position:3722326:-1
position: 3722326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3717092-3717241:-1:exon

position:3717092:-1
position: 3717092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3717241:-1
position: 3717241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3714283-3715709:-1:exon

position:3715709:-1
position: 3715709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 1
translation: MSSPDWGYDGDNGPEQWGKLYPIANGNNQSPINIKTSETKHDTSLKPISVSYNPATAKEIVNVGHSFHVNFEDNDNRSVLKGGPLSGSYRLRQFHFHWGITDDYGSEHLVDGVKYSAEFHIVHWNSAKYSSFAEAASQADGLAIIGVLMKVGPANPNLQKILDALKSVKTKGKSAPFTNFDPSVLLPSSLDYWTYFGSLTHPPLHESVIWIILKESISISSEQLAQFRSLLSNVEGGKEAPIKHNNRPPQPLKGRTVKASF
SIO_010081: CA1
subclass of: SO_0000673
so part of: CA1
location: join(3734030..3734066,3735198..3735395,3736888..3737006,3739047..3739142,3740021..3740083,3742725..3742880,3743863..3743979)
location: region:3734030-3743979:1
so has part: feature:3734030-3734066:1:exon
so has part: feature:3735198-3735395:1:exon
so has part: feature:3736888-3737006:1:exon
so has part: feature:3739047-3739142:1:exon
so has part: feature:3740021-3740083:1:exon
so has part: feature:3742725-3742880:1:exon
so has part: feature:3743863-3743979:1:exon

XP_031297265.1
type: Protein
SIO_000068: ncbiprotein

position:3734030:1
position: 3734030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3743979:1
position: 3743979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3734030-3734066:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3735198-3735395:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3736888-3737006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3739047-3739142:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3740021-3740083:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3742725-3742880:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3743863-3743979:1:exon

CA13
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3775933..3804679)
location: region:3775933-3804679:-1
so has part: feature:3775933-3804679:-1:exon
subclass of: SO_0000010

105088506
type: Gene
SIO_000068: ncbigene

position:3775933:-1
position: 3775933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3804679:-1
position: 3804679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3775933-3804679:-1:exon

CA13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CA13
product: carbonic anhydrase 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_010979366.2
SIO_010081: CA13
subclass of: SO_0000673
so part of: CA13
location: complement(join(3775933..3778208,3785569..3785724,3786240..3786302,3787601..3787696,3793905..3794023,3799709..3799906,3804425..3804679))
location: region:3775933-3804679:-1
so has part: feature:3804425-3804679:-1:exon
so has part: feature:3799709-3799906:-1:exon
so has part: feature:3793905-3794023:-1:exon
so has part: feature:3787601-3787696:-1:exon
so has part: feature:3786240-3786302:-1:exon
so has part: feature:3785569-3785724:-1:exon
so has part: feature:3775933-3778208:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3804425-3804679:-1:exon

position:3804425:-1
position: 3804425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3799709-3799906:-1:exon

position:3799709:-1
position: 3799709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3799906:-1
position: 3799906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3793905-3794023:-1:exon

position:3793905:-1
position: 3793905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3794023:-1
position: 3794023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3787601-3787696:-1:exon

position:3787601:-1
position: 3787601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3787696:-1
position: 3787696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3786240-3786302:-1:exon

position:3786240:-1
position: 3786240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3786302:-1
position: 3786302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3785569-3785724:-1:exon

position:3785569:-1
position: 3785569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3785724:-1
position: 3785724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3775933-3778208:-1:exon

position:3778208:-1
position: 3778208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CA13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CA13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carbonic anhydrase 13
translation: MSRFSWGYGEHNGPIHWNQFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDASSAKIISNSGHSFCVDFDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADDHGSEHVVDGVRYAAELHIVHWNSDKYPSFVEAAHEPDGLAVLGVFLQVGEHNSQLQKITDILELIKEKGKQTRFTNFDPLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPISISSQQLATFRTLMCTGEGEAAAFLLSNHRPPQPLKGRTVRASFH
SIO_010081: CA13
subclass of: SO_0000673
so part of: CA13
location: complement(join(3778089..3778208,3785569..3785724,3786240..3786302,3787601..3787696,3793905..3794023,3799709..3799906,3804425..3804461))
location: region:3778089-3804461:-1
so has part: feature:3804425-3804461:-1:exon
so has part: feature:3799709-3799906:-1:exon
so has part: feature:3793905-3794023:-1:exon
so has part: feature:3787601-3787696:-1:exon
so has part: feature:3786240-3786302:-1:exon
so has part: feature:3785569-3785724:-1:exon
so has part: feature:3778089-3778208:-1:exon

XP_010977668.1
type: Protein
SIO_000068: ncbiprotein

position:3778089:-1
position: 3778089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3804461:-1
position: 3804461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3804425-3804461:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3799709-3799906:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3793905-3794023:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3787601-3787696:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3786240-3786302:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3785569-3785724:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3778089-3778208:-1:exon

RBIS
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: RBIS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3817811..3822802
location: region:3817811-3822802:1
so has part: feature:3817811-3822802:1:exon
subclass of: SO_0000010

105088508
type: Gene
SIO_000068: ncbigene

position:3817811:1
position: 3817811
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3822802:1
position: 3822802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817811-3822802:1:exon

RBIS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RBIS
product: ribosomal biogenesis factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_010979371.2
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3817811..3817966,3820072..3820188,3822277..3822393,3822673..3822802)
location: region:3817811-3822802:1
so has part: feature:3817811-3817966:1:exon
so has part: feature:3820072-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3817811-3817966:1:exon

position:3817966:1
position: 3817966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3820072-3820188:1:exon

position:3820072:1
position: 3820072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3820188:1
position: 3820188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3822277-3822393:1:exon

position:3822277:1
position: 3822277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3822393:1
position: 3822393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3822673-3822802:1:exon

position:3822673:1
position: 3822673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RBIS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RBIS
product: ribosomal biogenesis factor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_031441407.1
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3817815..3817966,3819821..3819964,3820072..3820188,3822277..3822393,3822673..3822802)
location: region:3817815-3822802:1
so has part: feature:3817815-3817966:1:exon
so has part: feature:3819821-3819964:1:exon
so has part: feature:3820072-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822802:1:exon

position:3817815:1
position: 3817815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817815-3817966:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3819821-3819964:1:exon

position:3819821:1
position: 3819821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3819964:1
position: 3819964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3820072-3820188:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3822673-3822802:1:exon

RBIS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RBIS
product: ribosomal biogenesis factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_010979370.2
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3817832..3817966,3818516..3818684,3820072..3820188,3822277..3822393,3822673..3822802)
location: region:3817832-3822802:1
so has part: feature:3817832-3817966:1:exon
so has part: feature:3818516-3818684:1:exon
so has part: feature:3820072-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822802:1:exon

position:3817832:1
position: 3817832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817832-3817966:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3818516-3818684:1:exon

position:3818516:1
position: 3818516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3818684:1
position: 3818684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3820072-3820188:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3822673-3822802:1:exon

RBIS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RBIS
product: ribosomal biogenesis factor, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_010979373.2
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3817839..3817971,3820072..3820188,3822277..3822393,3822673..3822802)
location: region:3817839-3822802:1
so has part: feature:3817839-3817971:1:exon
so has part: feature:3820072-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822802:1:exon

position:3817839:1
position: 3817839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3817839-3817971:1:exon

position:3817971:1
position: 3817971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3820072-3820188:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3822673-3822802:1:exon

RBIS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RBIS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal biogenesis factor isoform X1
translation: MSSLGQTMAKNKLRGQKSRNVFHIASQKSFKVKNKAKPVTTNLKKIKIVNDEKVNRMNKAFIDIQKELAHFSRGLCLEPLQKQLIPEQRREDKPVNVDEATRLMAQL
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3818667..3818684,3820072..3820188,3822277..3822393,3822673..3822744)
location: region:3818667-3822744:1
so has part: feature:3818667-3818684:1:exon
so has part: feature:3820072-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822744:1:exon

XP_010977672.1
type: Protein
SIO_000068: ncbiprotein

position:3818667:1
position: 3818667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3822744:1
position: 3822744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3818667-3818684:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3820072-3820188:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3822673-3822744:1:exon

RBIS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RBIS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal biogenesis factor isoform X2
translation: MAKNKLRGQKSRNVFHIASQKSFKVKNKAKPVTTNLKKIKIVNDEKVNRMNKAFIDIQKELAHFSRGLCLEPLQKQLIPEQRREDKPVNVDEATRLMAQL
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3820075..3820188,3822277..3822393,3822673..3822744)
location: region:3820075-3822744:1
so has part: feature:3820075-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822744:1:exon

XP_031297267.1
type: Protein
SIO_000068: ncbiprotein

position:3820075:1
position: 3820075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3820075-3820188:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3822673-3822744:1:exon

RBIS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RBIS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal biogenesis factor isoform X2
translation: MAKNKLRGQKSRNVFHIASQKSFKVKNKAKPVTTNLKKIKIVNDEKVNRMNKAFIDIQKELAHFSRGLCLEPLQKQLIPEQRREDKPVNVDEATRLMAQL
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3820075..3820188,3822277..3822393,3822673..3822744)
location: region:3820075-3822744:1
so has part: feature:3820075-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822744:1:exon

XP_010977673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3820075-3820188:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3822673-3822744:1:exon

RBIS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RBIS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosomal biogenesis factor isoform X2
translation: MAKNKLRGQKSRNVFHIASQKSFKVKNKAKPVTTNLKKIKIVNDEKVNRMNKAFIDIQKELAHFSRGLCLEPLQKQLIPEQRREDKPVNVDEATRLMAQL
SIO_010081: RBIS
subclass of: SO_0000673
so part of: RBIS
location: join(3820075..3820188,3822277..3822393,3822673..3822744)
location: region:3820075-3822744:1
so has part: feature:3820075-3820188:1:exon
so has part: feature:3822277-3822393:1:exon
so has part: feature:3822673-3822744:1:exon

XP_010977675.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3820075-3820188:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3822277-3822393:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3822673-3822744:1:exon

E2F5
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: E2F5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3823116..3851344)
location: region:3823116-3851344:-1
so has part: feature:3823116-3851344:-1:exon
subclass of: SO_0000010

105088507
type: Gene
SIO_000068: ncbigene

position:3823116:-1
position: 3823116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3851344:-1
position: 3851344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3823116-3851344:-1:exon

E2F5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: E2F5
product: E2F transcription factor 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031441406.1
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: complement(join(3823116..3823572,3824600..3824647,3826430..3826697,3827792..3827856,3829164..3829207,3830521..3830682,3831540..3831649,3850993..3851344))
location: region:3823116-3851344:-1
so has part: feature:3850993-3851344:-1:exon
so has part: feature:3831540-3831649:-1:exon
so has part: feature:3830521-3830682:-1:exon
so has part: feature:3829164-3829207:-1:exon
so has part: feature:3827792-3827856:-1:exon
so has part: feature:3826430-3826697:-1:exon
so has part: feature:3824600-3824647:-1:exon
so has part: feature:3823116-3823572:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3850993-3851344:-1:exon

position:3850993:-1
position: 3850993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3831540-3831649:-1:exon

position:3831540:-1
position: 3831540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3831649:-1
position: 3831649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3830521-3830682:-1:exon

position:3830521:-1
position: 3830521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3830682:-1
position: 3830682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3829164-3829207:-1:exon

position:3829164:-1
position: 3829164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3829207:-1
position: 3829207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3827792-3827856:-1:exon

position:3827792:-1
position: 3827792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3827856:-1
position: 3827856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3826430-3826697:-1:exon

position:3826430:-1
position: 3826430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3826697:-1
position: 3826697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3824600-3824647:-1:exon

position:3824600:-1
position: 3824600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3824647:-1
position: 3824647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3823116-3823572:-1:exon

position:3823572:-1
position: 3823572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

E2F5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: E2F5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: transcription factor E2F5
translation: MAAAEPASSGQPAPQGQGQGQGQRPQPPPSQAHPRPPPPPRAPAXGRQQQAQKSLGLLTTKFVSLLQEAKDGVLDLKAAADTLAVRQKRRIYDITNVLEGIDLIEKKSKNSIQWKGVGAGCNTKEVIDRLRYLKAEIEDLELKERELDQQKLWLQQSIKNVMDDSVNNRFSYVTHEDICNCFNGDTLLAIQAPSGTQLEVPIPEMGQNGQKKYQINLKSHSGPIHVLLINKESSSSKPVVFPVPPPDDLTQPSSQPSTPVTPQKSNPATQNLPEQHVTERSQNVQQTPATDLSSAGSISGDIIDELMSSDVFPLLRLSPTPADDYNFNLDDNEGVCDLFDVQILNY
SIO_010081: E2F5
subclass of: SO_0000673
so part of: E2F5
location: complement(join(3823463..3823572,3824600..3824647,3826430..3826697,3827792..3827856,3829164..3829207,3830521..3830682,3831540..3831649,3850993..3851224))
location: region:3823463-3851224:-1
so has part: feature:3850993-3851224:-1:exon
so has part: feature:3831540-3831649:-1:exon
so has part: feature:3830521-3830682:-1:exon
so has part: feature:3829164-3829207:-1:exon
so has part: feature:3827792-3827856:-1:exon
so has part: feature:3826430-3826697:-1:exon
so has part: feature:3824600-3824647:-1:exon
so has part: feature:3823463-3823572:-1:exon

XP_031297266.1
type: Protein
SIO_000068: ncbiprotein

position:3823463:-1
position: 3823463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3851224:-1
position: 3851224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3850993-3851224:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3831540-3831649:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3830521-3830682:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3829164-3829207:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3827792-3827856:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3826430-3826697:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3824600-3824647:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3823463-3823572:-1:exon

LRRCC1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LRRCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3858663..3888648)
location: region:3858663-3888648:-1
so has part: feature:3858663-3888648:-1:exon
subclass of: SO_0000010

105088578
type: Gene
SIO_000068: ncbigene

position:3858663:-1
position: 3858663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3888648:-1
position: 3888648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3858663-3888648:-1:exon

LRRCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LRRCC1
product: leucine rich repeat and coiled-coil centrosomal protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_031441409.1
SIO_010081: LRRCC1
subclass of: SO_0000673
so part of: LRRCC1
location: complement(join(3858663..3859374,3861284..3861419,3863421..3863558,3863648..3863856,3866497..3866660,3867555..3867729,3868461..3868646,3869237..3869438,3870829..3870968,3871512..3871716,3875108..3875256,3876207..3876354,3876624..3876820,3882243..3882452,3882556..3882731,3884693..3884860,3885658..3885723,3888459..3888648))
location: region:3858663-3888648:-1
so has part: feature:3888459-3888648:-1:exon
so has part: feature:3885658-3885723:-1:exon
so has part: feature:3884693-3884860:-1:exon
so has part: feature:3882556-3882731:-1:exon
so has part: feature:3882243-3882452:-1:exon
so has part: feature:3876624-3876820:-1:exon
so has part: feature:3876207-3876354:-1:exon
so has part: feature:3875108-3875256:-1:exon
so has part: feature:3871512-3871716:-1:exon
so has part: feature:3870829-3870968:-1:exon
so has part: feature:3869237-3869438:-1:exon
so has part: feature:3868461-3868646:-1:exon
so has part: feature:3867555-3867729:-1:exon
so has part: feature:3866497-3866660:-1:exon
so has part: feature:3863648-3863856:-1:exon
so has part: feature:3863421-3863558:-1:exon
so has part: feature:3861284-3861419:-1:exon
so has part: feature:3858663-3859374:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3888459-3888648:-1:exon

position:3888459:-1
position: 3888459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3885658-3885723:-1:exon

position:3885658:-1
position: 3885658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3885723:-1
position: 3885723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3884693-3884860:-1:exon

position:3884693:-1
position: 3884693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3884860:-1
position: 3884860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3882556-3882731:-1:exon

position:3882556:-1
position: 3882556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3882731:-1
position: 3882731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3882243-3882452:-1:exon

position:3882243:-1
position: 3882243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3882452:-1
position: 3882452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3876624-3876820:-1:exon

position:3876624:-1
position: 3876624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3876820:-1
position: 3876820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3876207-3876354:-1:exon

position:3876207:-1
position: 3876207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3876354:-1
position: 3876354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3875108-3875256:-1:exon

position:3875108:-1
position: 3875108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3875256:-1
position: 3875256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3871512-3871716:-1:exon

position:3871512:-1
position: 3871512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3871716:-1
position: 3871716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3870829-3870968:-1:exon

position:3870829:-1
position: 3870829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3870968:-1
position: 3870968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3869237-3869438:-1:exon

position:3869237:-1
position: 3869237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3869438:-1
position: 3869438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3868461-3868646:-1:exon

position:3868461:-1
position: 3868461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3868646:-1
position: 3868646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3867555-3867729:-1:exon

position:3867555:-1
position: 3867555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3867729:-1
position: 3867729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3866497-3866660:-1:exon

position:3866497:-1
position: 3866497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3866660:-1
position: 3866660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3863648-3863856:-1:exon

position:3863648:-1
position: 3863648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3863856:-1
position: 3863856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3863421-3863558:-1:exon

position:3863421:-1
position: 3863421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3863558:-1
position: 3863558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3861284-3861419:-1:exon

position:3861284:-1
position: 3861284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3861419:-1
position: 3861419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3858663-3859374:-1:exon

position:3859374:-1
position: 3859374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRCC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LRRCC1
product: leucine rich repeat and coiled-coil centrosomal protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_031441408.1
SIO_010081: LRRCC1
subclass of: SO_0000673
so part of: LRRCC1
location: complement(join(3858663..3859374,3861284..3861419,3863421..3863558,3863648..3863856,3866497..3866660,3867555..3867729,3868461..3868646,3869237..3869438,3870829..3870968,3871512..3871716,3875108..3875256,3876207..3876354,3876624..3876820,3882243..3882452,3882556..3882731,3884693..3884860,3885658..3885723,3886043..3886248,3888459..3888646))
location: region:3858663-3888646:-1
so has part: feature:3888459-3888646:-1:exon
so has part: feature:3886043-3886248:-1:exon
so has part: feature:3885658-3885723:-1:exon
so has part: feature:3884693-3884860:-1:exon
so has part: feature:3882556-3882731:-1:exon
so has part: feature:3882243-3882452:-1:exon
so has part: feature:3876624-3876820:-1:exon
so has part: feature:3876207-3876354:-1:exon
so has part: feature:3875108-3875256:-1:exon
so has part: feature:3871512-3871716:-1:exon
so has part: feature:3870829-3870968:-1:exon
so has part: feature:3869237-3869438:-1:exon
so has part: feature:3868461-3868646:-1:exon
so has part: feature:3867555-3867729:-1:exon
so has part: feature:3866497-3866660:-1:exon
so has part: feature:3863648-3863856:-1:exon
so has part: feature:3863421-3863558:-1:exon
so has part: feature:3861284-3861419:-1:exon
so has part: feature:3858663-3859374:-1:exon

position:3888646:-1
position: 3888646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888459-3888646:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3886043-3886248:-1:exon

position:3886043:-1
position: 3886043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3886248:-1
position: 3886248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3885658-3885723:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3884693-3884860:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3882556-3882731:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3882243-3882452:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3876624-3876820:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3876207-3876354:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3875108-3875256:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3871512-3871716:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3870829-3870968:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3869237-3869438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3868461-3868646:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3867555-3867729:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3866497-3866660:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3863648-3863856:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3863421-3863558:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3861284-3861419:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3858663-3859374:-1:exon

LRRCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LRRCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X1
translation: MEAPVEAEVENEDGDSSCGDLCFMDKGLRSISELSLDSALHAINLHCNNISKIKAIDHIWNLRHLDLSSNQISQIEGLNTLTKLSTLNLSCNLITRIEGLEALTNLTRLNLSYNHINDLSGLMPLHGIKHKLRYIDLHSNCIDSIHHLLQCTVGLHFLTNLILEKNGEDNPVCHLPGYRAIMLQTLPQLRILDCKNIFGEPVDMAEINSSRLQCFEGLLDNLVSSDSPLNISEDEIIDGTPVVTPPIDEIAPLDQFASTPTDTGLASLISVCPSSEPEKVNHENDFQNEMKLQKLDNQLLQLLSETSNSLIDNVPEKDLRPKRDTDMTSESDYGIRKECSRKIPRRSKIPYYSKTIQTIKHHSKNNSPFISCNRKMKQPFFKELYVRSSLVNSNVLEESEEQKTEMIKVNNGSTEDTTYRALVEQLDQEREKRWKAEQAEKKLMDYIDELHQHANEKKDIHSLALLTTDRLKEIIFKERNSKLQLEIMVHRLQNEIKKLTIELIKARDQQEDHIRHLRTLEKALEKMEKQKGQHQAAQMRLIQEVELKAAAADREINLLRTSLHQEKEQVQQLHELLALKEQEHRKDLETREFFTEAEFQEALAKEIAKEERKHEQVIQEYQNKIDALNQQYLDLENEFRIALTVEARRFKDVKDGFENVATELAKSKHALVWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAINLQNQINTLEILIDDDKQKSIQIELLKHEKMQLLAELAAKESLIYGLRTERKVWGHELAQQGSSLAQHHGKLEAQIESLCRENESLRKAGERDNDALKIKCKIIDDQTETIGKLKECLQEREEEIKILQEKITEIQKCTQEQLDEKSSQLDDIIEKLERHNERKEKLKQQLKVKELELEEIRKAYSTLNQKWHDKGELLCHLEMQVKEAKENFENQERKLKAERDKSIELQKDAVEKLHNMDHVFKKQVDAIVEAHQAEIIQLASEKQKCIDSANSKVHRVEEEMRELLQETCKNKKAMEEKIKQLAFALNQIQQEM
SIO_010081: LRRCC1
subclass of: SO_0000673
so part of: LRRCC1
location: complement(join(3859252..3859374,3861284..3861419,3863421..3863558,3863648..3863856,3866497..3866660,3867555..3867729,3868461..3868646,3869237..3869438,3870829..3870968,3871512..3871716,3875108..3875256,3876207..3876354,3876624..3876820,3882243..3882452,3882556..3882731,3884693..3884860,3885658..3885723,3886043..3886248,3888459..3888547))
location: region:3859252-3888547:-1
so has part: feature:3888459-3888547:-1:exon
so has part: feature:3886043-3886248:-1:exon
so has part: feature:3885658-3885723:-1:exon
so has part: feature:3884693-3884860:-1:exon
so has part: feature:3882556-3882731:-1:exon
so has part: feature:3882243-3882452:-1:exon
so has part: feature:3876624-3876820:-1:exon
so has part: feature:3876207-3876354:-1:exon
so has part: feature:3875108-3875256:-1:exon
so has part: feature:3871512-3871716:-1:exon
so has part: feature:3870829-3870968:-1:exon
so has part: feature:3869237-3869438:-1:exon
so has part: feature:3868461-3868646:-1:exon
so has part: feature:3867555-3867729:-1:exon
so has part: feature:3866497-3866660:-1:exon
so has part: feature:3863648-3863856:-1:exon
so has part: feature:3863421-3863558:-1:exon
so has part: feature:3861284-3861419:-1:exon
so has part: feature:3859252-3859374:-1:exon

XP_031297268.1
type: Protein
SIO_000068: ncbiprotein

position:3859252:-1
position: 3859252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3888547:-1
position: 3888547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888459-3888547:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3886043-3886248:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3885658-3885723:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3884693-3884860:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3882556-3882731:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3882243-3882452:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3876624-3876820:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3876207-3876354:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3875108-3875256:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3871512-3871716:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3870829-3870968:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3869237-3869438:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3868461-3868646:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3867555-3867729:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3866497-3866660:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3863648-3863856:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3863421-3863558:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3861284-3861419:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3859252-3859374:-1:exon

LRRCC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LRRCC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X2
translation: MRMATAAAGICASWTKACGGLEALTNLTRLNLSYNHINDLSGLMPLHGIKHKLRYIDLHSNCIDSIHHLLQCTVGLHFLTNLILEKNGEDNPVCHLPGYRAIMLQTLPQLRILDCKNIFGEPVDMAEINSSRLQCFEGLLDNLVSSDSPLNISEDEIIDGTPVVTPPIDEIAPLDQFASTPTDTGLASLISVCPSSEPEKVNHENDFQNEMKLQKLDNQLLQLLSETSNSLIDNVPEKDLRPKRDTDMTSESDYGIRKECSRKIPRRSKIPYYSKTIQTIKHHSKNNSPFISCNRKMKQPFFKELYVRSSLVNSNVLEESEEQKTEMIKVNNGSTEDTTYRALVEQLDQEREKRWKAEQAEKKLMDYIDELHQHANEKKDIHSLALLTTDRLKEIIFKERNSKLQLEIMVHRLQNEIKKLTIELIKARDQQEDHIRHLRTLEKALEKMEKQKGQHQAAQMRLIQEVELKAAAADREINLLRTSLHQEKEQVQQLHELLALKEQEHRKDLETREFFTEAEFQEALAKEIAKEERKHEQVIQEYQNKIDALNQQYLDLENEFRIALTVEARRFKDVKDGFENVATELAKSKHALVWAQRKENESSSLIKDLTCMVKEQKTKLAEVSKLKQETAINLQNQINTLEILIDDDKQKSIQIELLKHEKMQLLAELAAKESLIYGLRTERKVWGHELAQQGSSLAQHHGKLEAQIESLCRENESLRKAGERDNDALKIKCKIIDDQTETIGKLKECLQEREEEIKILQEKITEIQKCTQEQLDEKSSQLDDIIEKLERHNERKEKLKQQLKVKELELEEIRKAYSTLNQKWHDKGELLCHLEMQVKEAKENFENQERKLKAERDKSIELQKDAVEKLHNMDHVFKKQVDAIVEAHQAEIIQLASEKQKCIDSANSKVHRVEEEMRELLQETCKNKKAMEEKIKQLAFALNQIQQEM
SIO_010081: LRRCC1
subclass of: SO_0000673
so part of: LRRCC1
location: complement(join(3859252..3859374,3861284..3861419,3863421..3863558,3863648..3863856,3866497..3866660,3867555..3867729,3868461..3868646,3869237..3869438,3870829..3870968,3871512..3871716,3875108..3875256,3876207..3876354,3876624..3876820,3882243..3882452,3882556..3882731,3884693..3884860,3885658..3885723,3888459..3888516))
location: region:3859252-3888516:-1
so has part: feature:3888459-3888516:-1:exon
so has part: feature:3885658-3885723:-1:exon
so has part: feature:3884693-3884860:-1:exon
so has part: feature:3882556-3882731:-1:exon
so has part: feature:3882243-3882452:-1:exon
so has part: feature:3876624-3876820:-1:exon
so has part: feature:3876207-3876354:-1:exon
so has part: feature:3875108-3875256:-1:exon
so has part: feature:3871512-3871716:-1:exon
so has part: feature:3870829-3870968:-1:exon
so has part: feature:3869237-3869438:-1:exon
so has part: feature:3868461-3868646:-1:exon
so has part: feature:3867555-3867729:-1:exon
so has part: feature:3866497-3866660:-1:exon
so has part: feature:3863648-3863856:-1:exon
so has part: feature:3863421-3863558:-1:exon
so has part: feature:3861284-3861419:-1:exon
so has part: feature:3859252-3859374:-1:exon

XP_031297269.1
type: Protein
SIO_000068: ncbiprotein

position:3888516:-1
position: 3888516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888459-3888516:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3885658-3885723:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3884693-3884860:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3882556-3882731:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3882243-3882452:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3876624-3876820:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3876207-3876354:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3875108-3875256:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3871512-3871716:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3870829-3870968:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3869237-3869438:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3868461-3868646:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3867555-3867729:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3866497-3866660:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3863648-3863856:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3863421-3863558:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3861284-3861419:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3859252-3859374:-1:exon

LOC105088512
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088512
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3888743..4020986
location: region:3888743-4020986:1
so has part: feature:3888743-4020986:1:exon
subclass of: SO_0000011

105088512
type: Gene
SIO_000068: ncbigene

position:3888743:1
position: 3888743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4020986:1
position: 4020986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888743-4020986:1:exon

LOC105088512
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088512
product: uncharacterized LOC105088512, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004133228.1
SIO_010081: LOC105088512
subclass of: SO_0000673
so part of: LOC105088512
location: join(3888743..3888840,3888956..3889074,4016057..4016193,4020956..4020986)
location: region:3888743-4020986:1
so has part: feature:3888743-3888840:1:exon
so has part: feature:3888956-3889074:1:exon
so has part: feature:4016057-4016193:1:exon
so has part: feature:4020956-4020986:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3888743-3888840:1:exon

position:3888840:1
position: 3888840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3888956-3889074:1:exon

position:3888956:1
position: 3888956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3889074:1
position: 3889074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4016057-4016193:1:exon

position:4016057:1
position: 4016057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4016193:1
position: 4016193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4020956-4020986:1:exon

position:4020956:1
position: 4020956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088512
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088512
product: uncharacterized LOC105088512, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_837094.2
SIO_010081: LOC105088512
subclass of: SO_0000673
so part of: LOC105088512
location: join(3888743..3888840,3888956..3889074,4016057..4017067)
location: region:3888743-4017067:1
so has part: feature:3888743-3888840:1:exon
so has part: feature:3888956-3889074:1:exon
so has part: feature:4016057-4017067:1:exon

position:4017067:1
position: 4017067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888743-3888840:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3888956-3889074:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4016057-4017067:1:exon

LOC105088512
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088512
product: uncharacterized LOC105088512, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133229.1
SIO_010081: LOC105088512
subclass of: SO_0000673
so part of: LOC105088512
location: join(3888743..3888840,3888956..3889074,3966055..3966363)
location: region:3888743-3966363:1
so has part: feature:3888743-3888840:1:exon
so has part: feature:3888956-3889074:1:exon
so has part: feature:3966055-3966363:1:exon

position:3966363:1
position: 3966363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888743-3888840:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3888956-3889074:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3966055-3966363:1:exon

position:3966055:1
position: 3966055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088511
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088511
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3902726..3913728)
location: region:3902726-3913728:-1
so has part: feature:3902726-3913728:-1:exon
subclass of: SO_0000010

105088511
type: Gene
SIO_000068: ncbigene

position:3902726:-1
position: 3902726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3913728:-1
position: 3913728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3902726-3913728:-1:exon

LOC105088511
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088511
product: solute carrier family 7 member 13, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_031441410.1
SIO_010081: LOC105088511
subclass of: SO_0000673
so part of: LOC105088511
location: complement(join(3902726..3903250,3905613..3905728,3911071..3911202,3912931..3913728))
location: region:3902726-3913728:-1
so has part: feature:3912931-3913728:-1:exon
so has part: feature:3911071-3911202:-1:exon
so has part: feature:3905613-3905728:-1:exon
so has part: feature:3902726-3903250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3912931-3913728:-1:exon

position:3912931:-1
position: 3912931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3911071-3911202:-1:exon

position:3911071:-1
position: 3911071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3911202:-1
position: 3911202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3905613-3905728:-1:exon

position:3905613:-1
position: 3905613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3905728:-1
position: 3905728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3902726-3903250:-1:exon

position:3903250:-1
position: 3903250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105088511
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088511
product: solute carrier family 7 member 13, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_010979378.2
SIO_010081: LOC105088511
subclass of: SO_0000673
so part of: LOC105088511
location: complement(join(3902726..3903250,3905613..3905974,3911071..3911202,3912931..3913728))
location: region:3902726-3913728:-1
so has part: feature:3912931-3913728:-1:exon
so has part: feature:3911071-3911202:-1:exon
so has part: feature:3905613-3905974:-1:exon
so has part: feature:3902726-3903250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3912931-3913728:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3911071-3911202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3905613-3905974:-1:exon

position:3905974:-1
position: 3905974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3902726-3903250:-1:exon

LOC105088511
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088511
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 7 member 13 isoform X2
translation: MKMGGSTQLQRVIGYFHGTIFLFSIIIGAGIFVAPKGVLKYSSLNVGVSLSIWAACAVVSTMAALSHAELGTTFPRSGAQYYFLKRSLGPFIAFFYLWINLFSTPAGIAARGLLLAGYITQPFYPGCFVPEMPKKCLALAILWCLGILNARGVKEVTWFQTVSTVVKMTVLCFVSVTGLVLVVRGRKENLDRFEKAFDGEVPNASQIAEAFLQGLYAYSGWGVLVRIAGELKNPSETIPKCVITALTLVALIYLLVNVSYIAVLTPREIISSDLILLINYVGFTDWIQLGLMMTGLLKLRYQEPHLSRPYKVRLPFVFGTIAVSLFLVLTPVIKSPQMHHIYVLLFILSGLLFYLPFVHFNLGSTYFNKITCFLQLLLNVSPADDTDEYISTEETLQKNPPETPAKKE
SIO_010081: LOC105088511
subclass of: SO_0000673
so part of: LOC105088511
location: complement(join(3902957..3903250,3905613..3905728,3911071..3911202,3912931..3913615))
location: region:3902957-3913615:-1
so has part: feature:3912931-3913615:-1:exon
so has part: feature:3911071-3911202:-1:exon
so has part: feature:3905613-3905728:-1:exon
so has part: feature:3902957-3903250:-1:exon

XP_031297270.1
type: Protein
SIO_000068: ncbiprotein

position:3902957:-1
position: 3902957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3913615:-1
position: 3913615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3912931-3913615:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3911071-3911202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3905613-3905728:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3902957-3903250:-1:exon

LOC105088511
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088511
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: solute carrier family 7 member 13 isoform X1
translation: MKMGGSTQLQRVIGYFHGTIFLFSIIIGAGIFVAPKGVLKYSSLNVGVSLSIWAACAVVSTMAALSHAELGTTFPRSGAQYYFLKRSLGPFIAFFYLWINLFSTPAGIAARGLLLAGYITQPFYPGCFVPEMPKKCLALAILWCLGILNARGVKEVTWFQTVSTVVKMTVLCFVSVTGLVLVVRGRKENLDRFEKAFDGEVPNASQIAEAFLQGLYAYSGWGVLVRIAGELKNPSETIPKCVITALTLVALIYLLVNVSYIAVLTPREIISSDAVAITWMDRVIPSMQWAISIGVSSSIVSSLNCTVFSTSRLWYMASQQGQLPLIFSTLNIQSCPIVAVIQMLIFASILIIPSDLILLINYVGFTDWIQLGLMMTGLLKLRYQEPHLSRPYKVRLPFVFGTIAVSLFLVLTPVIKSPQMHHIYVLLFILSGLLFYLPFVHFNLGSTYFNKITCFLQLLLNVSPADDTDEYISTEETLQKNPPETPAKKE
SIO_010081: LOC105088511
subclass of: SO_0000673
so part of: LOC105088511
location: complement(join(3902957..3903250,3905613..3905974,3911071..3911202,3912931..3913615))
location: region:3902957-3913615:-1
so has part: feature:3912931-3913615:-1:exon
so has part: feature:3911071-3911202:-1:exon
so has part: feature:3905613-3905974:-1:exon
so has part: feature:3902957-3903250:-1:exon

XP_010977680.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3912931-3913615:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3911071-3911202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3905613-3905974:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3902957-3903250:-1:exon

RALYL
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3997713..4605391)
location: region:3997713-4605391:-1
so has part: feature:3997713-4605391:-1:exon
subclass of: SO_0000010

105088509
type: Gene
SIO_000068: ncbigene

position:3997713:-1
position: 3997713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4605391:-1
position: 4605391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3997713-4605391:-1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RALYL
product: RALY RNA binding protein like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 19 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_031441412.1
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3997713..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297675,4605192..4605391))
location: region:3997713-4605391:-1
so has part: feature:4605192-4605391:-1:exon
so has part: feature:4297397-4297675:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3997713-3998698:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4605192-4605391:-1:exon

position:4605192:-1
position: 4605192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4297397-4297675:-1:exon

position:4297397:-1
position: 4297397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4297675:-1
position: 4297675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4104200-4104275:-1:exon

position:4104200:-1
position: 4104200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4104275:-1
position: 4104275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4078566-4078598:-1:exon

position:4078566:-1
position: 4078566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4078598:-1
position: 4078598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4067413-4067460:-1:exon

position:4067413:-1
position: 4067413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4067460:-1
position: 4067460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4058236-4058399:-1:exon

position:4058236:-1
position: 4058236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4058399:-1
position: 4058399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4042358-4042471:-1:exon

position:4042358:-1
position: 4042358
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4042471:-1
position: 4042471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4030557-4030729:-1:exon

position:4030557:-1
position: 4030557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4030729:-1
position: 4030729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3997713-3998698:-1:exon

position:3998698:-1
position: 3998698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RALYL
product: RALY RNA binding protein like, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031441414.1
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3997720..3998698,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297675,4604329..4604413))
location: region:3997720-4604413:-1
so has part: feature:4604329-4604413:-1:exon
so has part: feature:4297397-4297675:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:3997720-3998698:-1:exon

position:3997720:-1
position: 3997720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4604413:-1
position: 4604413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4604329-4604413:-1:exon

position:4604329:-1
position: 4604329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4297397-4297675:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3997720-3998698:-1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RALYL
product: RALY RNA binding protein like, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441413.1
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3997723..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297675,4487449..4489217))
location: region:3997723-4489217:-1
so has part: feature:4487449-4489217:-1:exon
so has part: feature:4297397-4297675:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3997723-3998698:-1:exon

position:3997723:-1
position: 3997723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4489217:-1
position: 4489217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4487449-4489217:-1:exon

position:4487449:-1
position: 4487449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4297397-4297675:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3997723-3998698:-1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RALYL
product: RALY RNA binding protein like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_010979374.2
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3997724..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297675,4604329..4604413))
location: region:3997724-4604413:-1
so has part: feature:4604329-4604413:-1:exon
so has part: feature:4297397-4297675:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3997724-3998698:-1:exon

position:3997724:-1
position: 3997724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4604329-4604413:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4297397-4297675:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3997724-3998698:-1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RALYL
product: RALY RNA binding protein like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031441411.1
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3997724..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297675,4604009..4604077))
location: region:3997724-4604077:-1
so has part: feature:4604009-4604077:-1:exon
so has part: feature:4297397-4297675:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3997724-3998698:-1:exon

position:4604077:-1
position: 4604077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4604009-4604077:-1:exon

position:4604009:-1
position: 4604009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4297397-4297675:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3997724-3998698:-1:exon

RALYL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: RALYL
product: RALY RNA binding protein like, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_010979376.2
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3997725..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4158560..4158815))
location: region:3997725-4158815:-1
so has part: feature:4158560-4158815:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3997725-3998698:-1:exon

position:3997725:-1
position: 3997725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4158815:-1
position: 4158815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4158560-4158815:-1:exon

position:4158560:-1
position: 4158560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3997725-3998698:-1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X2
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAVSTDKVI
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3998676..3998698,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297652))
location: region:3998676-4297652:-1
so has part: feature:4297397-4297652:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:3998676-3998698:-1:exon

XP_031297274.1
type: Protein
SIO_000068: ncbiprotein

position:3998676:-1
position: 3998676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4297652:-1
position: 4297652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4297397-4297652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3998676-3998698:-1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3998681..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297652))
location: region:3998681-4297652:-1
so has part: feature:4297397-4297652:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3998681-3998698:-1:exon

XP_031297271.1
type: Protein
SIO_000068: ncbiprotein

position:3998681:-1
position: 3998681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4297397-4297652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998681-3998698:-1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3998681..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297652))
location: region:3998681-4297652:-1
so has part: feature:4297397-4297652:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3998681-3998698:-1:exon

XP_031297272.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4297397-4297652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998681-3998698:-1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3998681..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297652))
location: region:3998681-4297652:-1
so has part: feature:4297397-4297652:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3998681-3998698:-1:exon

XP_031297273.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4297397-4297652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998681-3998698:-1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X1
translation: MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARIIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3998681..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4297397..4297652))
location: region:3998681-4297652:-1
so has part: feature:4297397-4297652:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3998681-3998698:-1:exon

XP_010977676.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4297397-4297652:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998681-3998698:-1:exon

RALYL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: RALYL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding Raly-like protein isoform X3
translation: MTMYRSKRRHQRYINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTVSGSSSSGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESIELIQDECVSENADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
SIO_010081: RALYL
subclass of: SO_0000673
so part of: RALYL
location: complement(join(3998681..3998698,4030557..4030729,4042358..4042471,4058236..4058399,4067413..4067460,4078566..4078598,4104200..4104275,4158560..4158596))
location: region:3998681-4158596:-1
so has part: feature:4158560-4158596:-1:exon
so has part: feature:4104200-4104275:-1:exon
so has part: feature:4078566-4078598:-1:exon
so has part: feature:4067413-4067460:-1:exon
so has part: feature:4058236-4058399:-1:exon
so has part: feature:4042358-4042471:-1:exon
so has part: feature:4030557-4030729:-1:exon
so has part: feature:3998681-3998698:-1:exon

XP_010977678.1
type: Protein
SIO_000068: ncbiprotein

position:4158596:-1
position: 4158596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4158560-4158596:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4104200-4104275:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4078566-4078598:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4067413-4067460:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4058236-4058399:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4042358-4042471:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4030557-4030729:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998681-3998698:-1:exon

LOC116149604
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149604
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4841447..4866431
location: region:4841447-4866431:1
so has part: feature:4841447-4866431:1:exon
subclass of: SO_0000011

116149604
type: Gene
SIO_000068: ncbigene

position:4841447:1
position: 4841447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4866431:1
position: 4866431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4841447-4866431:1:exon

LOC116149604
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149604
product: uncharacterized LOC116149604
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133204.1
SIO_010081: LOC116149604
subclass of: SO_0000673
so part of: LOC116149604
location: join(4841447..4841543,4847095..4847099,4850963..4850969,4866420..4866431)
location: region:4841447-4866431:1
so has part: feature:4841447-4841543:1:exon
so has part: feature:4847095-4847099:1:exon
so has part: feature:4850963-4850969:1:exon
so has part: feature:4866420-4866431:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4841447-4841543:1:exon

position:4841543:1
position: 4841543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4847095-4847099:1:exon

position:4847095:1
position: 4847095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4847099:1
position: 4847099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4850963-4850969:1:exon

position:4850963:1
position: 4850963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4850969:1
position: 4850969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4866420-4866431:1:exon

position:4866420:1
position: 4866420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRNAL-UAG
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAL-UAG
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4878272..4878341)
location: region:4878272-4878341:-1
so has part: feature:4878272-4878341:-1:exon
subclass of: SO_0000663

116149702
type: Gene
SIO_000068: ncbigene

position:4878272:-1
position: 4878272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4878341:-1
position: 4878341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4878272-4878341:-1:exon

TRNAL-UAG
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAL-UAG
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4878308..4878310),aa:Leu, seq:tag)
SIO_010081: TRNAL-UAG
subclass of: SO_0000673
so part of: TRNAL-UAG
location: complement(4878272..4878341)
location: region:4878272-4878341:-1
so has part: feature:4878272-4878341:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4878272-4878341:-1:exon

LOC105088579
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088579
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(5173282..5188660)
location: region:5173282-5188660:-1
so has part: feature:5173282-5188660:-1:exon

105088579
type: Gene
SIO_000068: ncbigene

position:5173282:-1
position: 5173282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5188660:-1
position: 5188660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5173282-5188660:-1:exon

LOC105088579
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088579
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088579
subclass of: SO_0000673
so part of: LOC105088579
location: complement(5173282..5173874)
location: region:5173282-5173874:-1
so has part: feature:5173282-5173874:-1:exon

position:5173874:-1
position: 5173874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5173282-5173874:-1:exon

LOC105088579
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088579
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088579
subclass of: SO_0000673
so part of: LOC105088579
location: complement(5187355..5187535)
location: region:5187355-5187535:-1
so has part: feature:5187355-5187535:-1:exon

position:5187355:-1
position: 5187355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5187535:-1
position: 5187535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5187355-5187535:-1:exon

LOC105088579
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105088579
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 58% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105088579
subclass of: SO_0000673
so part of: LOC105088579
location: complement(5188535..5188660)
location: region:5188535-5188660:-1
so has part: feature:5188535-5188660:-1:exon

position:5188535:-1
position: 5188535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5188535-5188660:-1:exon

LOC116149685
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149685
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 5409665..5409770
location: region:5409665-5409770:1
so has part: feature:5409665-5409770:1:exon
subclass of: SO_0000623

116149685
type: Gene
SIO_000068: ncbigene

position:5409665:1
position: 5409665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5409770:1
position: 5409770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5409665-5409770:1:exon

LOC116149685
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149685
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133327.1
SIO_010081: LOC116149685
subclass of: SO_0000673
so part of: LOC116149685
location: 5409665..5409770
location: region:5409665-5409770:1
so has part: feature:5409665-5409770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5409665-5409770:1:exon

LOC116149623
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149623
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5574316..5641431)
location: region:5574316-5641431:-1
so has part: feature:5574316-5641431:-1:exon
subclass of: SO_0000011

116149623
type: Gene
SIO_000068: ncbigene

position:5574316:-1
position: 5574316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5641431:-1
position: 5641431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5574316-5641431:-1:exon

LOC116149623
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149623
product: uncharacterized LOC116149623
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133230.1
SIO_010081: LOC116149623
subclass of: SO_0000673
so part of: LOC116149623
location: complement(join(5574316..5576526,5641388..5641431))
location: region:5574316-5641431:-1
so has part: feature:5641388-5641431:-1:exon
so has part: feature:5574316-5576526:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5641388-5641431:-1:exon

position:5641388:-1
position: 5641388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5574316-5576526:-1:exon

position:5576526:-1
position: 5576526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105088513
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088513
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5655110..5885371)
location: region:5655110-5885371:-1
so has part: feature:5655110-5885371:-1:exon
subclass of: SO_0000011

105088513
type: Gene
SIO_000068: ncbigene

position:5655110:-1
position: 5655110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5885371:-1
position: 5885371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5655110-5885371:-1:exon

LOC105088513
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088513
product: uncharacterized LOC105088513
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_837095.2
SIO_010081: LOC105088513
subclass of: SO_0000673
so part of: LOC105088513
location: complement(join(5655110..5657607,5821949..5821981,5870620..5870909,5885269..5885371))
location: region:5655110-5885371:-1
so has part: feature:5885269-5885371:-1:exon
so has part: feature:5870620-5870909:-1:exon
so has part: feature:5821949-5821981:-1:exon
so has part: feature:5655110-5657607:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5885269-5885371:-1:exon

position:5885269:-1
position: 5885269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5870620-5870909:-1:exon

position:5870620:-1
position: 5870620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5870909:-1
position: 5870909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5821949-5821981:-1:exon

position:5821949:-1
position: 5821949
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5821981:-1
position: 5821981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5655110-5657607:-1:exon

position:5657607:-1
position: 5657607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SNX16
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5885447..5918060
location: region:5885447-5918060:1
so has part: feature:5885447-5918060:1:exon
subclass of: SO_0000010

105088514
type: Gene
SIO_000068: ncbigene

position:5885447:1
position: 5885447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5918060:1
position: 5918060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5885447-5918060:1:exon

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNX16
product: sorting nexin 16, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_010979379.2
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: join(5885447..5885580,5887265..5887739,5892308..5892394,5899394..5899542,5907666..5907735,5914256..5914392,5914924..5915043,5915789..5918060)
location: region:5885447-5918060:1
so has part: feature:5885447-5885580:1:exon
so has part: feature:5887265-5887739:1:exon
so has part: feature:5892308-5892394:1:exon
so has part: feature:5899394-5899542:1:exon
so has part: feature:5907666-5907735:1:exon
so has part: feature:5914256-5914392:1:exon
so has part: feature:5914924-5915043:1:exon
so has part: feature:5915789-5918060:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5885447-5885580:1:exon

position:5885580:1
position: 5885580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5887265-5887739:1:exon

position:5887265:1
position: 5887265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5887739:1
position: 5887739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5892308-5892394:1:exon

position:5892308:1
position: 5892308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5892394:1
position: 5892394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5899394-5899542:1:exon

position:5899394:1
position: 5899394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5899542:1
position: 5899542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5907666-5907735:1:exon

position:5907666:1
position: 5907666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5907735:1
position: 5907735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5914256-5914392:1:exon

position:5914256:1
position: 5914256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5914392:1
position: 5914392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5914924-5915043:1:exon

position:5914924:1
position: 5914924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5915043:1
position: 5915043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5915789-5918060:1:exon

position:5915789:1
position: 5915789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNX16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNX16
product: sorting nexin 16, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_010979381.2
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: join(5885447..5885580,5887265..5887512,5887600..5887739,5892308..5892394,5899394..5899542,5907666..5907735,5914256..5914392,5914924..5915043,5915789..5918060)
location: region:5885447-5918060:1
so has part: feature:5885447-5885580:1:exon
so has part: feature:5887265-5887512:1:exon
so has part: feature:5887600-5887739:1:exon
so has part: feature:5892308-5892394:1:exon
so has part: feature:5899394-5899542:1:exon
so has part: feature:5907666-5907735:1:exon
so has part: feature:5914256-5914392:1:exon
so has part: feature:5914924-5915043:1:exon
so has part: feature:5915789-5918060:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5885447-5885580:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5887265-5887512:1:exon

position:5887512:1
position: 5887512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5887600-5887739:1:exon

position:5887600:1
position: 5887600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5892308-5892394:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5899394-5899542:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5907666-5907735:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5914256-5914392:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5914924-5915043:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5915789-5918060:1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X1
translation: MATPYVPVPMPIGNSASSFTTSRNQRSSSFGSISTSSNSSKGQLEDANMGNFKQTSVPDQMDSTSSVCSSPLIRTKFTGADSSIEYSARPRESDEQNPETVNWEDRPSTPTILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLHIDTLENRLRALSLEPEESLLMSGTGGGQILKVESSALEVDQDVLDEESRADNKQYLSSHEPENSVSDIEVAEVAYNAEED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: join(5887365..5887739,5892308..5892394,5899394..5899542,5907666..5907735,5914256..5914392,5914924..5915043,5915789..5915885)
location: region:5887365-5915885:1
so has part: feature:5887365-5887739:1:exon
so has part: feature:5892308-5892394:1:exon
so has part: feature:5899394-5899542:1:exon
so has part: feature:5907666-5907735:1:exon
so has part: feature:5914256-5914392:1:exon
so has part: feature:5914924-5915043:1:exon
so has part: feature:5915789-5915885:1:exon

XP_010977681.2
type: Protein
SIO_000068: ncbiprotein

position:5887365:1
position: 5887365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5915885:1
position: 5915885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5887365-5887739:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5892308-5892394:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5899394-5899542:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5907666-5907735:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5914256-5914392:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5914924-5915043:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5915789-5915885:1:exon

SNX16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNX16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sorting nexin-16 isoform X2
translation: MATPYVPVPMPIGNSASSFTTSRNQRSSSFGSISTSSNSSKGQLEDANMGADSSIEYSARPRESDEQNPETVNWEDRPSTPTILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFPGFRLALPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREFLCLDDPPGPFDSLEESRAFCETLEETNYRFQKELLEKQKELESLKKLLSEKQLHIDTLENRLRALSLEPEESLLMSGTGGGQILKVESSALEVDQDVLDEESRADNKQYLSSHEPENSVSDIEVAEVAYNAEED
SIO_010081: SNX16
subclass of: SO_0000673
so part of: SNX16
location: join(5887365..5887512,5887600..5887739,5892308..5892394,5899394..5899542,5907666..5907735,5914256..5914392,5914924..5915043,5915789..5915885)
location: region:5887365-5915885:1
so has part: feature:5887365-5887512:1:exon
so has part: feature:5887600-5887739:1:exon
so has part: feature:5892308-5892394:1:exon
so has part: feature:5899394-5899542:1:exon
so has part: feature:5907666-5907735:1:exon
so has part: feature:5914256-5914392:1:exon
so has part: feature:5914924-5915043:1:exon
so has part: feature:5915789-5915885:1:exon

XP_010977683.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5887365-5887512:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5887600-5887739:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5892308-5892394:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5899394-5899542:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5907666-5907735:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5914256-5914392:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5914924-5915043:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5915789-5915885:1:exon

CHMP4C
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CHMP4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5936834..5964277)
location: region:5936834-5964277:-1
so has part: feature:5936834-5964277:-1:exon
subclass of: SO_0000010

105088515
type: Gene
SIO_000068: ncbigene

position:5936834:-1
position: 5936834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5964277:-1
position: 5964277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5936834-5964277:-1:exon

CHMP4C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CHMP4C
product: charged multivesicular body protein 4C
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_010979382.2
SIO_010081: CHMP4C
subclass of: SO_0000673
so part of: CHMP4C
location: complement(join(5936834..5938421,5938605..5938770,5941425..5941539,5943720..5943897,5963889..5964277))
location: region:5936834-5964277:-1
so has part: feature:5963889-5964277:-1:exon
so has part: feature:5943720-5943897:-1:exon
so has part: feature:5941425-5941539:-1:exon
so has part: feature:5938605-5938770:-1:exon
so has part: feature:5936834-5938421:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5963889-5964277:-1:exon

position:5963889:-1
position: 5963889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5943720-5943897:-1:exon

position:5943720:-1
position: 5943720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5943897:-1
position: 5943897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5941425-5941539:-1:exon

position:5941425:-1
position: 5941425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5941539:-1
position: 5941539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5938605-5938770:-1:exon

position:5938605:-1
position: 5938605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5938770:-1
position: 5938770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5936834-5938421:-1:exon

position:5938421:-1
position: 5938421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CHMP4C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CHMP4C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: charged multivesicular body protein 4c
translation: MSKLGKFFKGGGSSKSRAAPSPQEALARLRETEEMLGKKQEYLENRIQRELSLAKKHGTRNKRAALQALKRKKRYEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGLAAKAMKAVHENMDVNKIDDLMQEITEQQDIAQEISEAFSQRVGFGDDFDEDELMAELEELEQEELNKKMTNIRLPSVPSSSLPAQPDRVPGRMPSVPSSAHRARAASSRRAEEEDDDIKQLAAWAT
SIO_010081: CHMP4C
subclass of: SO_0000673
so part of: CHMP4C
location: complement(join(5938357..5938421,5938605..5938770,5941425..5941539,5943720..5943897,5963889..5964078))
location: region:5938357-5964078:-1
so has part: feature:5963889-5964078:-1:exon
so has part: feature:5943720-5943897:-1:exon
so has part: feature:5941425-5941539:-1:exon
so has part: feature:5938605-5938770:-1:exon
so has part: feature:5938357-5938421:-1:exon

XP_010977684.1
type: Protein
SIO_000068: ncbiprotein

position:5938357:-1
position: 5938357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5964078:-1
position: 5964078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5963889-5964078:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5943720-5943897:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5941425-5941539:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5938605-5938770:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5938357-5938421:-1:exon

ZFAND1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ZFAND1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5974855..5991842
location: region:5974855-5991842:1
so has part: feature:5974855-5991842:1:exon
subclass of: SO_0000010

105088516
type: Gene
SIO_000068: ncbigene

position:5974855:1
position: 5974855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5991842:1
position: 5991842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5974855-5991842:1:exon

ZFAND1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZFAND1
product: zinc finger AN1-type containing 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_010979383.2
SIO_010081: ZFAND1
subclass of: SO_0000673
so part of: ZFAND1
location: join(5974855..5974965,5976280..5976322,5977230..5977269,5979331..5979458,5979544..5979635,5980404..5980525,5990471..5990626,5990719..5991842)
location: region:5974855-5991842:1
so has part: feature:5974855-5974965:1:exon
so has part: feature:5976280-5976322:1:exon
so has part: feature:5977230-5977269:1:exon
so has part: feature:5979331-5979458:1:exon
so has part: feature:5979544-5979635:1:exon
so has part: feature:5980404-5980525:1:exon
so has part: feature:5990471-5990626:1:exon
so has part: feature:5990719-5991842:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5974855-5974965:1:exon

position:5974965:1
position: 5974965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5976280-5976322:1:exon

position:5976280:1
position: 5976280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5976322:1
position: 5976322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5977230-5977269:1:exon

position:5977230:1
position: 5977230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5977269:1
position: 5977269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5979331-5979458:1:exon

position:5979331:1
position: 5979331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5979458:1
position: 5979458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5979544-5979635:1:exon

position:5979544:1
position: 5979544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5979635:1
position: 5979635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5980404-5980525:1:exon

position:5980404:1
position: 5980404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5980525:1
position: 5980525
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5990471-5990626:1:exon

position:5990471:1
position: 5990471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5990626:1
position: 5990626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5990719-5991842:1:exon

position:5990719:1
position: 5990719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZFAND1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZFAND1
product: zinc finger AN1-type containing 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_031441415.1
SIO_010081: ZFAND1
subclass of: SO_0000673
so part of: ZFAND1
location: join(5974855..5974965,5976280..5976322,5977230..5977269,5979331..5979458,5979544..5979635,5980404..5980525,5990507..5990626,5990719..5991842)
location: region:5974855-5991842:1
so has part: feature:5974855-5974965:1:exon
so has part: feature:5976280-5976322:1:exon
so has part: feature:5977230-5977269:1:exon
so has part: feature:5979331-5979458:1:exon
so has part: feature:5979544-5979635:1:exon
so has part: feature:5980404-5980525:1:exon
so has part: feature:5990507-5990626:1:exon
so has part: feature:5990719-5991842:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5974855-5974965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5976280-5976322:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977230-5977269:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5979331-5979458:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5979544-5979635:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5980404-5980525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5990507-5990626:1:exon

position:5990507:1
position: 5990507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5990719-5991842:1:exon

ZFAND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZFAND1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AN1-type zinc finger protein 1 isoform X1
translation: MAELNIGQHCQVEHCRQRDFLPFVCDGCSGIFCLEHRSRESHGCPEVTVINERLKSDTHTSYPCSFKDCAGRELVPVVCPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETASKRRKGAKNSETAAKVALMKLKMHADGDKSLPQAERIYFQVFFPKGSKEKSRPMFFCQRWSIGKVIDAAASLASLRNDNNKSTAQKLRLCHVTSGEALPLDHILETWIAKEDCPLHNGGNIILEYLNDEEQFLKNIDSYLE
SIO_010081: ZFAND1
subclass of: SO_0000673
so part of: ZFAND1
location: join(5974911..5974965,5976280..5976322,5977230..5977269,5979331..5979458,5979544..5979635,5980404..5980525,5990471..5990626,5990719..5990889)
location: region:5974911-5990889:1
so has part: feature:5974911-5974965:1:exon
so has part: feature:5976280-5976322:1:exon
so has part: feature:5977230-5977269:1:exon
so has part: feature:5979331-5979458:1:exon
so has part: feature:5979544-5979635:1:exon
so has part: feature:5980404-5980525:1:exon
so has part: feature:5990471-5990626:1:exon
so has part: feature:5990719-5990889:1:exon

XP_010977685.1
type: Protein
SIO_000068: ncbiprotein

position:5974911:1
position: 5974911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5990889:1
position: 5990889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5974911-5974965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5976280-5976322:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977230-5977269:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5979331-5979458:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5979544-5979635:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5980404-5980525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5990471-5990626:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5990719-5990889:1:exon

ZFAND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZFAND1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: AN1-type zinc finger protein 1 isoform X2
translation: MAELNIGQHCQVEHCRQRDFLPFVCDGCSGIFCLEHRSRESHGCPEVTVINERLKSDTHTSYPCSFKDCAGRELVPVVCPYCEKNFCLRHRHQSDHECEKLEIPKPRMAATQKLVKDIIDSKTGETASKRRKGAKNSETAAKVALMKLKMHADGDKSLPQGSKEKSRPMFFCQRWSIGKVIDAAASLASLRNDNNKSTAQKLRLCHVTSGEALPLDHILETWIAKEDCPLHNGGNIILEYLNDEEQFLKNIDSYLE
SIO_010081: ZFAND1
subclass of: SO_0000673
so part of: ZFAND1
location: join(5974911..5974965,5976280..5976322,5977230..5977269,5979331..5979458,5979544..5979635,5980404..5980525,5990507..5990626,5990719..5990889)
location: region:5974911-5990889:1
so has part: feature:5974911-5974965:1:exon
so has part: feature:5976280-5976322:1:exon
so has part: feature:5977230-5977269:1:exon
so has part: feature:5979331-5979458:1:exon
so has part: feature:5979544-5979635:1:exon
so has part: feature:5980404-5980525:1:exon
so has part: feature:5990507-5990626:1:exon
so has part: feature:5990719-5990889:1:exon

XP_031297275.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5974911-5974965:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5976280-5976322:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5977230-5977269:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5979331-5979458:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5979544-5979635:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5980404-5980525:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5990507-5990626:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5990719-5990889:1:exon

SLC10A5
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SLC10A5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5994231..6001143
location: region:5994231-6001143:1
so has part: feature:5994231-6001143:1:exon
subclass of: SO_0000010

105088517
type: Gene
SIO_000068: ncbigene

position:5994231:1
position: 5994231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6001143:1
position: 6001143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5994231-6001143:1:exon

SLC10A5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SLC10A5
product: solute carrier family 10 member 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441416.1
SIO_010081: SLC10A5
subclass of: SO_0000673
so part of: SLC10A5
location: 5994231..6001143
location: region:5994231-6001143:1
so has part: feature:5994231-6001143:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5994231-6001143:1:exon

SLC10A5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SLC10A5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: sodium/bile acid cotransporter 5
translation: MIRELLIVLLLSFVTLGEARKSFLSFLNREKTEIFFFTKTEETIVVRSNYREKQPNSSFLFVQLEDPKILQVVNVTKTFSDVTDFTINLVTDEDGETNLTVQLWVSKGRRERLIEVKNVKVRVLRPRPDGLFQASNHIDRNILMLFLPMILLNKCAFGCKIELQVFQTVWKRPLPIILATITQFFLMPFCGFLLTQILALPEAQAFGFVMTCTCPGGGGGYLFALLLEGDVTLAILMTCMSTLLALIMMPANSYIYSRLLGLSGTLHSPVFKIMSTLLFILTPISVGIVIKHRLPEKATFLERIVRPLSLILMFIGVYLTFRMGLSFLKAVNLEVLLLSVFVPALGLLFGFFFAKISMLPLPVCKTVSIESGVVNSFLALAIIQLSFSQTHADLASVAPFTVAMCSGCEMLLILLFYKAKKRWILILEEKRQKNLPV
SIO_010081: SLC10A5
subclass of: SO_0000673
so part of: SLC10A5
location: 5994511..5995824
location: region:5994511-5995824:1
so has part: feature:5994511-5995824:1:exon

XP_031297276.1
type: Protein
SIO_000068: ncbiprotein

position:5994511:1
position: 5994511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5995824:1
position: 5995824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5994511-5995824:1:exon

IMPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6001332..6019825
location: region:6001332-6019825:1
so has part: feature:6001332-6019825:1:exon
subclass of: SO_0000010

105088518
type: Gene
SIO_000068: ncbigene

position:6001332:1
position: 6001332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6019825:1
position: 6019825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6001332-6019825:1:exon

IMPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IMPA1
product: inositol monophosphatase 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_031441419.1
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6001332..6001463,6005576..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6019825)
location: region:6001332-6019825:1
so has part: feature:6001332-6001463:1:exon
so has part: feature:6005576-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6019825:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6001332-6001463:1:exon

position:6001463:1
position: 6001463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6005576-6005641:1:exon

position:6005576:1
position: 6005576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6005641:1
position: 6005641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6006018-6006151:1:exon

position:6006018:1
position: 6006018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6006151:1
position: 6006151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6008088-6008192:1:exon

position:6008088:1
position: 6008088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6008192:1
position: 6008192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6009517-6009562:1:exon

position:6009517:1
position: 6009517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6009562:1
position: 6009562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6011798-6011906:1:exon

position:6011798:1
position: 6011798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6011906:1
position: 6011906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6013310-6013418:1:exon

position:6013310:1
position: 6013310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6013418:1
position: 6013418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6016853-6017004:1:exon

position:6016853:1
position: 6016853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6017004:1
position: 6017004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6017860-6019825:1:exon

position:6017860:1
position: 6017860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IMPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IMPA1
product: inositol monophosphatase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_031441418.1
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6002466..6002588,6005579..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6019825)
location: region:6002466-6019825:1
so has part: feature:6002466-6002588:1:exon
so has part: feature:6005579-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6019825:1:exon

position:6002466:1
position: 6002466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6002466-6002588:1:exon

position:6002588:1
position: 6002588
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6005579-6005641:1:exon

position:6005579:1
position: 6005579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6017860-6019825:1:exon

IMPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IMPA1
product: inositol monophosphatase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031441417.1
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6002469..6002588,6005576..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6019825)
location: region:6002469-6019825:1
so has part: feature:6002469-6002588:1:exon
so has part: feature:6005576-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6019825:1:exon

position:6002469:1
position: 6002469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6002469-6002588:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6005576-6005641:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6017860-6019825:1:exon

IMPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IMPA1
product: inositol monophosphatase 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031441420.1
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6002494..6002627,6005576..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6019825)
location: region:6002494-6019825:1
so has part: feature:6002494-6002627:1:exon
so has part: feature:6005576-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6019825:1:exon

position:6002494:1
position: 6002494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6002494-6002627:1:exon

position:6002627:1
position: 6002627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6005576-6005641:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6017860-6019825:1:exon

IMPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol monophosphatase 1
translation: MADPWQECMDYAVTLARKAGEVVREALKNERNIMIKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCMEDKMYTGRKGRGAFCNGQKLQVSHQEDVTKSLLMTELGSSRTPETLRIILSNMERLLCLPIHGIRGVGTAALNMCLVAAGYADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDMMSRRIIASSNKTLAERIAKEIQIIPLQRDDED
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6005579..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6017975)
location: region:6005579-6017975:1
so has part: feature:6005579-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6017975:1:exon

XP_031297277.1
type: Protein
SIO_000068: ncbiprotein

position:6017975:1
position: 6017975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6005579-6005641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6017860-6017975:1:exon

IMPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol monophosphatase 1
translation: MADPWQECMDYAVTLARKAGEVVREALKNERNIMIKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCMEDKMYTGRKGRGAFCNGQKLQVSHQEDVTKSLLMTELGSSRTPETLRIILSNMERLLCLPIHGIRGVGTAALNMCLVAAGYADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDMMSRRIIASSNKTLAERIAKEIQIIPLQRDDED
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6005579..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6017975)
location: region:6005579-6017975:1
so has part: feature:6005579-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6017975:1:exon

XP_031297278.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6005579-6005641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6017860-6017975:1:exon

IMPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol monophosphatase 1
translation: MADPWQECMDYAVTLARKAGEVVREALKNERNIMIKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCMEDKMYTGRKGRGAFCNGQKLQVSHQEDVTKSLLMTELGSSRTPETLRIILSNMERLLCLPIHGIRGVGTAALNMCLVAAGYADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDMMSRRIIASSNKTLAERIAKEIQIIPLQRDDED
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6005579..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6017975)
location: region:6005579-6017975:1
so has part: feature:6005579-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6017975:1:exon

XP_031297279.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6005579-6005641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6017860-6017975:1:exon

IMPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IMPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inositol monophosphatase 1
translation: MADPWQECMDYAVTLARKAGEVVREALKNERNIMIKSSPVDLVTATDQKVEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCMEDKMYTGRKGRGAFCNGQKLQVSHQEDVTKSLLMTELGSSRTPETLRIILSNMERLLCLPIHGIRGVGTAALNMCLVAAGYADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFDMMSRRIIASSNKTLAERIAKEIQIIPLQRDDED
SIO_010081: IMPA1
subclass of: SO_0000673
so part of: IMPA1
location: join(6005579..6005641,6006018..6006151,6008088..6008192,6009517..6009562,6011798..6011906,6013310..6013418,6016853..6017004,6017860..6017975)
location: region:6005579-6017975:1
so has part: feature:6005579-6005641:1:exon
so has part: feature:6006018-6006151:1:exon
so has part: feature:6008088-6008192:1:exon
so has part: feature:6009517-6009562:1:exon
so has part: feature:6011798-6011906:1:exon
so has part: feature:6013310-6013418:1:exon
so has part: feature:6016853-6017004:1:exon
so has part: feature:6017860-6017975:1:exon

XP_031297280.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6005579-6005641:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6006018-6006151:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6008088-6008192:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6009517-6009562:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6011798-6011906:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6013310-6013418:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6016853-6017004:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6017860-6017975:1:exon

LOC116149624
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149624
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6070479..6152766)
location: region:6070479-6152766:-1
so has part: feature:6070479-6152766:-1:exon
subclass of: SO_0000011

116149624
type: Gene
SIO_000068: ncbigene

position:6070479:-1
position: 6070479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6152766:-1
position: 6152766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6070479-6152766:-1:exon

LOC116149624
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149624
product: uncharacterized LOC116149624, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004133232.1
SIO_010081: LOC116149624
subclass of: SO_0000673
so part of: LOC116149624
location: complement(join(6070479..6070582,6144768..6144868,6151911..6152002,6152353..6152766))
location: region:6070479-6152766:-1
so has part: feature:6152353-6152766:-1:exon
so has part: feature:6151911-6152002:-1:exon
so has part: feature:6144768-6144868:-1:exon
so has part: feature:6070479-6070582:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6152353-6152766:-1:exon

position:6152353:-1
position: 6152353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6151911-6152002:-1:exon

position:6151911:-1
position: 6151911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6152002:-1
position: 6152002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6144768-6144868:-1:exon

position:6144768:-1
position: 6144768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6144868:-1
position: 6144868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6070479-6070582:-1:exon

position:6070582:-1
position: 6070582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105088519
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088519
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6084169..6088397
location: region:6084169-6088397:1
so has part: feature:6084169-6088397:1:exon
subclass of: SO_0000010

105088519
type: Gene
SIO_000068: ncbigene

position:6084169:1
position: 6084169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6088397:1
position: 6088397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6084169-6088397:1:exon

LOC105088519
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088519
product: fatty acid-binding protein, adipocyte
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 mRNAs, 56 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_010979386.2
SIO_010081: LOC105088519
subclass of: SO_0000673
so part of: LOC105088519
location: join(6084169..6084326,6086805..6086977,6087603..6087704,6088172..6088397)
location: region:6084169-6088397:1
so has part: feature:6084169-6084326:1:exon
so has part: feature:6086805-6086977:1:exon
so has part: feature:6087603-6087704:1:exon
so has part: feature:6088172-6088397:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6084169-6084326:1:exon

position:6084326:1
position: 6084326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6086805-6086977:1:exon

position:6086805:1
position: 6086805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6086977:1
position: 6086977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6087603-6087704:1:exon

position:6087603:1
position: 6087603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6087704:1
position: 6087704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6088172-6088397:1:exon

position:6088172:1
position: 6088172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088519
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088519
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fatty acid-binding protein, adipocyte
translation: MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNVTISVNGDVINIKSESTFKNTEISFQLGQEFDEVTADDRKVKSIVTLEGGALVQVQKWDGKSTTIKRKLVDDKLVVECIMKDVISTRVYEKA
SIO_010081: LOC105088519
subclass of: SO_0000673
so part of: LOC105088519
location: join(6084254..6084326,6086805..6086977,6087603..6087704,6088172..6088222)
location: region:6084254-6088222:1
so has part: feature:6084254-6084326:1:exon
so has part: feature:6086805-6086977:1:exon
so has part: feature:6087603-6087704:1:exon
so has part: feature:6088172-6088222:1:exon

XP_010977688.1
type: Protein
SIO_000068: ncbiprotein

position:6084254:1
position: 6084254
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6088222:1
position: 6088222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6084254-6084326:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6086805-6086977:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6087603-6087704:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6088172-6088222:1:exon

LOC105088520
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088520
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6091918..6095738
location: region:6091918-6095738:1
so has part: feature:6091918-6095738:1:exon
subclass of: SO_0000010

105088520
type: Gene
SIO_000068: ncbigene

position:6091918:1
position: 6091918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6095738:1
position: 6095738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6091918-6095738:1:exon

LOC105088520
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088520
product: fatty acid-binding protein 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_010979387.2
SIO_010081: LOC105088520
subclass of: SO_0000673
so part of: LOC105088520
location: join(6091918..6092071,6094540..6094712,6095165..6095266,6095433..6095738)
location: region:6091918-6095738:1
so has part: feature:6091918-6092071:1:exon
so has part: feature:6094540-6094712:1:exon
so has part: feature:6095165-6095266:1:exon
so has part: feature:6095433-6095738:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6091918-6092071:1:exon

position:6092071:1
position: 6092071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6094540-6094712:1:exon

position:6094540:1
position: 6094540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6094712:1
position: 6094712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6095165-6095266:1:exon

position:6095165:1
position: 6095165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6095266:1
position: 6095266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6095433-6095738:1:exon

position:6095433:1
position: 6095433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088520
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fatty acid-binding protein 9
translation: MIEHFLGTWKLVSSENFEEYLKQLGMSVTDQNLAGLAKPRITISADKEKVNIKTESSFKNFEISFKLGEEFDETTADNRKVKSIVKLDGGSMIHVQKWLDKETTIKRRIVDGKMVVEYTMNNIVSTRIYEKV
SIO_010081: LOC105088520
subclass of: SO_0000673
so part of: LOC105088520
location: join(6091999..6092071,6094540..6094712,6095165..6095266,6095433..6095483)
location: region:6091999-6095483:1
so has part: feature:6091999-6092071:1:exon
so has part: feature:6094540-6094712:1:exon
so has part: feature:6095165-6095266:1:exon
so has part: feature:6095433-6095483:1:exon

XP_010977689.1
type: Protein
SIO_000068: ncbiprotein

position:6091999:1
position: 6091999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6095483:1
position: 6095483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6091999-6092071:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6094540-6094712:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6095165-6095266:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6095433-6095483:1:exon

LOC105088522
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088522
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6102620..6110227
location: region:6102620-6110227:1
so has part: feature:6102620-6110227:1:exon
subclass of: SO_0000010

105088522
type: Gene
SIO_000068: ncbigene

position:6102620:1
position: 6102620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6110227:1
position: 6110227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6102620-6110227:1:exon

LOC105088522
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088522
product: myelin P2 protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_031441422.1
SIO_010081: LOC105088522
subclass of: SO_0000673
so part of: LOC105088522
location: join(6102620..6102875,6104752..6104996,6107396..6107568,6107785..6107886,6108947..6110227)
location: region:6102620-6110227:1
so has part: feature:6102620-6102875:1:exon
so has part: feature:6104752-6104996:1:exon
so has part: feature:6107396-6107568:1:exon
so has part: feature:6107785-6107886:1:exon
so has part: feature:6108947-6110227:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6102620-6102875:1:exon

position:6102875:1
position: 6102875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6104752-6104996:1:exon

position:6104752:1
position: 6104752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6104996:1
position: 6104996
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6107396-6107568:1:exon

position:6107396:1
position: 6107396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6107568:1
position: 6107568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6107785-6107886:1:exon

position:6107785:1
position: 6107785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6107886:1
position: 6107886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6108947-6110227:1:exon

position:6108947:1
position: 6108947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105088522
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105088522
product: myelin P2 protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 38 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_010979388.2
SIO_010081: LOC105088522
subclass of: SO_0000673
so part of: LOC105088522
location: join(6102993..6103454,6104752..6104996,6107396..6107568,6107785..6107886,6108947..6110227)
location: region:6102993-6110227:1
so has part: feature:6102993-6103454:1:exon
so has part: feature:6104752-6104996:1:exon
so has part: feature:6107396-6107568:1:exon
so has part: feature:6107785-6107886:1:exon
so has part: feature:6108947-6110227:1:exon

position:6102993:1
position: 6102993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6102993-6103454:1:exon

position:6103454:1
position: 6103454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6104752-6104996:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6107396-6107568:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6107785-6107886:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6108947-6110227:1:exon

LOC105088522
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088522
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myelin P2 protein
translation: MTNKFLGTWKLVSSEHFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKNTEISFKLGQEFEETTADNRKAKSILTLSRGSLNQVQRWDDNETTIKRKLVDGKMVVECKMKDVVCTRIYEKV
SIO_010081: LOC105088522
subclass of: SO_0000673
so part of: LOC105088522
location: join(6104924..6104996,6107396..6107568,6107785..6107886,6108947..6108997)
location: region:6104924-6108997:1
so has part: feature:6104924-6104996:1:exon
so has part: feature:6107396-6107568:1:exon
so has part: feature:6107785-6107886:1:exon
so has part: feature:6108947-6108997:1:exon

XP_010977690.2
type: Protein
SIO_000068: ncbiprotein

position:6104924:1
position: 6104924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6108997:1
position: 6108997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6104924-6104996:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6107396-6107568:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6107785-6107886:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6108947-6108997:1:exon

LOC105088522
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105088522
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myelin P2 protein
translation: MTNKFLGTWKLVSSEHFDDYMKALGVGLATRKLGNLAKPRVIISKKGDIITIRTESTFKNTEISFKLGQEFEETTADNRKAKSILTLSRGSLNQVQRWDDNETTIKRKLVDGKMVVECKMKDVVCTRIYEKV
SIO_010081: LOC105088522
subclass of: SO_0000673
so part of: LOC105088522
location: join(6104924..6104996,6107396..6107568,6107785..6107886,6108947..6108997)
location: region:6104924-6108997:1
so has part: feature:6104924-6104996:1:exon
so has part: feature:6107396-6107568:1:exon
so has part: feature:6107785-6107886:1:exon
so has part: feature:6108947-6108997:1:exon

XP_031297282.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6104924-6104996:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6107396-6107568:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6107785-6107886:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6108947-6108997:1:exon

LOC116149624
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149624
product: uncharacterized LOC116149624, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_004133231.1
SIO_010081: LOC116149624
subclass of: SO_0000673
so part of: LOC116149624
location: complement(join(6122744..6125249,6144768..6144868,6151911..6152002,6152353..6152766))
location: region:6122744-6152766:-1
so has part: feature:6152353-6152766:-1:exon
so has part: feature:6151911-6152002:-1:exon
so has part: feature:6144768-6144868:-1:exon
so has part: feature:6122744-6125249:-1:exon

position:6122744:-1
position: 6122744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6152353-6152766:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6151911-6152002:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6144768-6144868:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6122744-6125249:-1:exon

position:6125249:-1
position: 6125249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105088523
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105088523
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6158678..6161372)
location: region:6158678-6161372:-1
so has part: feature:6158678-6161372:-1:exon
subclass of: SO_0000011

105088523
type: Gene
SIO_000068: ncbigene

position:6158678:-1
position: 6158678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6161372:-1
position: 6161372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6158678-6161372:-1:exon

LOC105088523
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088523
product: uncharacterized LOC105088523, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004133233.1
SIO_010081: LOC105088523
subclass of: SO_0000673
so part of: LOC105088523
location: complement(join(6158678..6159287,6159561..6160424,6160886..6160983,6161126..6161372))
location: region:6158678-6161372:-1
so has part: feature:6161126-6161372:-1:exon
so has part: feature:6160886-6160983:-1:exon
so has part: feature:6159561-6160424:-1:exon
so has part: feature:6158678-6159287:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6161126-6161372:-1:exon

position:6161126:-1
position: 6161126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6160886-6160983:-1:exon

position:6160886:-1
position: 6160886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6160983:-1
position: 6160983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6159561-6160424:-1:exon

position:6159561:-1
position: 6159561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6160424:-1
position: 6160424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6158678-6159287:-1:exon

position:6159287:-1
position: 6159287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105088523
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088523
product: uncharacterized LOC105088523, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_837097.2
SIO_010081: LOC105088523
subclass of: SO_0000673
so part of: LOC105088523
location: complement(join(6158693..6159287,6159561..6159618,6160886..6160983,6161186..6161330))
location: region:6158693-6161330:-1
so has part: feature:6161186-6161330:-1:exon
so has part: feature:6160886-6160983:-1:exon
so has part: feature:6159561-6159618:-1:exon
so has part: feature:6158693-6159287:-1:exon

position:6158693:-1
position: 6158693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6161330:-1
position: 6161330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6161186-6161330:-1:exon

position:6161186:-1
position: 6161186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6160886-6160983:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6159561-6159618:-1:exon

position:6159618:-1
position: 6159618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6158693-6159287:-1:exon

LOC105088523
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105088523
product: uncharacterized LOC105088523, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_837096.2
SIO_010081: LOC105088523
subclass of: SO_0000673
so part of: LOC105088523
location: complement(join(6158693..6159287,6159561..6159618,6160886..6160983,6161126..6161309))
location: region:6158693-6161309:-1
so has part: feature:6161126-6161309:-1:exon
so has part: feature:6160886-6160983:-1:exon
so has part: feature:6159561-6159618:-1:exon
so has part: feature:6158693-6159287:-1:exon

position:6161309:-1
position: 6161309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6161126-6161309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6160886-6160983:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6159561-6159618:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6158693-6159287:-1:exon

FABP5
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FABP5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6186787..6191613)
location: region:6186787-6191613:-1
so has part: feature:6186787-6191613:-1:exon
subclass of: SO_0000010

105088524
type: Gene
SIO_000068: ncbigene

position:6186787:-1
position: 6186787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6191613:-1
position: 6191613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6186787-6191613:-1:exon

FABP5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FABP5
product: fatty acid binding protein 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_010979389.2
SIO_010081: FABP5
subclass of: SO_0000673
so part of: FABP5
location: complement(join(6186787..6187039,6188293..6188394,6188758..6188930,6191456..6191613))
location: region:6186787-6191613:-1
so has part: feature:6191456-6191613:-1:exon
so has part: feature:6188758-6188930:-1:exon
so has part: feature:6188293-6188394:-1:exon
so has part: feature:6186787-6187039:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6191456-6191613:-1:exon

position:6191456:-1
position: 6191456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6188758-6188930:-1:exon

position:6188758:-1
position: 6188758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6188930:-1
position: 6188930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6188293-6188394:-1:exon

position:6188293:-1
position: 6188293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6188394:-1
position: 6188394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6186787-6187039:-1:exon

position:6187039:-1
position: 6187039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FABP5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FABP5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: fatty acid-binding protein 5
translation: MATIQQLVGRWRLVESKGFDEYMKEVGVGMALRKMGAMAKPDCIITFDGKNLSIKTESTLKTTQFSCSLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRRLENGKLVVECVMNNVTSTRVYEKVE
SIO_010081: FABP5
subclass of: SO_0000673
so part of: FABP5
location: complement(join(6186986..6187039,6188293..6188394,6188758..6188930,6191456..6191534))
location: region:6186986-6191534:-1
so has part: feature:6191456-6191534:-1:exon
so has part: feature:6188758-6188930:-1:exon
so has part: feature:6188293-6188394:-1:exon
so has part: feature:6186986-6187039:-1:exon

XP_010977691.1
type: Protein
SIO_000068: ncbiprotein

position:6186986:-1
position: 6186986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6191534:-1
position: 6191534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6191456-6191534:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6188758-6188930:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6188293-6188394:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6186986-6187039:-1:exon

LOC116149682
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149682
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(6246125..6246231)
location: region:6246125-6246231:-1
so has part: feature:6246125-6246231:-1:exon
subclass of: SO_0000623

116149682
type: Gene
SIO_000068: ncbigene

position:6246125:-1
position: 6246125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6246231:-1
position: 6246231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6246125-6246231:-1:exon

LOC116149682
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149682
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133324.1
SIO_010081: LOC116149682
subclass of: SO_0000673
so part of: LOC116149682
location: complement(6246125..6246231)
location: region:6246125-6246231:-1
so has part: feature:6246125-6246231:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6246125-6246231:-1:exon

PAG1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: PAG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6299127..6431698
location: region:6299127-6431698:1
so has part: feature:6299127-6431698:1:exon
subclass of: SO_0000010

105088525
type: Gene
SIO_000068: ncbigene

position:6299127:1
position: 6299127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6431698:1
position: 6431698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6299127-6431698:1:exon

PAG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PAG1
product: phosphoprotein membrane anchor with glycosphingolipid microdomains 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_031441423.1
SIO_010081: PAG1
subclass of: SO_0000673
so part of: PAG1
location: join(6299127..6299578,6340170..6340237,6374022..6374116,6406301..6406510,6408169..6408220,6411718..6411814,6414362..6414966,6418953..6419012,6422908..6431698)
location: region:6299127-6431698:1
so has part: feature:6299127-6299578:1:exon
so has part: feature:6340170-6340237:1:exon
so has part: feature:6374022-6374116:1:exon
so has part: feature:6406301-6406510:1:exon
so has part: feature:6408169-6408220:1:exon
so has part: feature:6411718-6411814:1:exon
so has part: feature:6414362-6414966:1:exon
so has part: feature:6418953-6419012:1:exon
so has part: feature:6422908-6431698:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6299127-6299578:1:exon

position:6299578:1
position: 6299578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6340170-6340237:1:exon

position:6340170:1
position: 6340170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6340237:1
position: 6340237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6374022-6374116:1:exon

position:6374022:1
position: 6374022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6374116:1
position: 6374116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6406301-6406510:1:exon

position:6406301:1
position: 6406301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6406510:1
position: 6406510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6408169-6408220:1:exon

position:6408169:1
position: 6408169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6408220:1
position: 6408220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6411718-6411814:1:exon

position:6411718:1
position: 6411718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6411814:1
position: 6411814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6414362-6414966:1:exon

position:6414362:1
position: 6414362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6414966:1
position: 6414966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6418953-6419012:1:exon

position:6418953:1
position: 6418953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6419012:1
position: 6419012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6422908-6431698:1:exon

position:6422908:1
position: 6422908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149625
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149625
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6392510..6421406)
location: region:6392510-6421406:-1
so has part: feature:6392510-6421406:-1:exon
subclass of: SO_0000011

116149625
type: Gene
SIO_000068: ncbigene

position:6392510:-1
position: 6392510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6421406:-1
position: 6421406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6392510-6421406:-1:exon

LOC116149625
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149625
product: uncharacterized LOC116149625
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133234.1
SIO_010081: LOC116149625
subclass of: SO_0000673
so part of: LOC116149625
location: complement(join(6392510..6392580,6403491..6403498,6421396..6421406))
location: region:6392510-6421406:-1
so has part: feature:6421396-6421406:-1:exon
so has part: feature:6403491-6403498:-1:exon
so has part: feature:6392510-6392580:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6421396-6421406:-1:exon

position:6421396:-1
position: 6421396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6403491-6403498:-1:exon

position:6403491:-1
position: 6403491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6403498:-1
position: 6403498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6392510-6392580:-1:exon

position:6392580:-1
position: 6392580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PAG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PAG1
product: phosphoprotein membrane anchor with glycosphingolipid microdomains 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_031441424.1
SIO_010081: PAG1
subclass of: SO_0000673
so part of: PAG1
location: join(6392564..6393498,6406301..6406510,6408169..6408220,6411718..6411814,6414362..6414966,6418953..6419012,6422908..6431698)
location: region:6392564-6431698:1
so has part: feature:6392564-6393498:1:exon
so has part: feature:6406301-6406510:1:exon
so has part: feature:6408169-6408220:1:exon
so has part: feature:6411718-6411814:1:exon
so has part: feature:6414362-6414966:1:exon
so has part: feature:6418953-6419012:1:exon
so has part: feature:6422908-6431698:1:exon

position:6392564:1
position: 6392564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6392564-6393498:1:exon

position:6393498:1
position: 6393498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6406301-6406510:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6408169-6408220:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6411718-6411814:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6414362-6414966:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6418953-6419012:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6422908-6431698:1:exon

PAG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PAG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphoprotein associated with glycosphingolipid-enriched microdomains 1
translation: MGPEGSMLSGGPTQILLWGSLAAVAAFFLIIFLVFLCSSCDREKKPRPHSGDHETLMNMPSDKEVFSRSVTSLATDAPVSSEQNGALTNGDILSEDSAMTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPESAVDTMLNERCADADQGLGMEGPYEVLKDSSSQENMVEDCLYETVKEIKDMAAAAHPGQGHSIRSKSTSALKELPGPQVNGKTNFAEYASVDRNKKCRQSVNADAVLGNACDPEEEAPPPVPVKLLDENENLQEKAESTGEEESALEGTSETNKRLSALSYKSREDDPTLTEEEISAMYSSVNKQGQAGNKSGQSLKALESSYPSVPGAAQRSPSSGNHLYATVKDFEKTPSGGGALPPTAGRPSEGPEPDYEAIPTLNREEEKAAPDASSHRGPFPKENDYESIGDVQPCRDVTRL
SIO_010081: PAG1
subclass of: SO_0000673
so part of: PAG1
location: join(6406386..6406510,6408169..6408220,6411718..6411814,6414362..6414966,6418953..6419012,6422908..6423279)
location: region:6406386-6423279:1
so has part: feature:6406386-6406510:1:exon
so has part: feature:6408169-6408220:1:exon
so has part: feature:6411718-6411814:1:exon
so has part: feature:6414362-6414966:1:exon
so has part: feature:6418953-6419012:1:exon
so has part: feature:6422908-6423279:1:exon

XP_031297283.1
type: Protein
SIO_000068: ncbiprotein

position:6406386:1
position: 6406386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6423279:1
position: 6423279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6406386-6406510:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6408169-6408220:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6411718-6411814:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6414362-6414966:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6418953-6419012:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6422908-6423279:1:exon

PAG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PAG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphoprotein associated with glycosphingolipid-enriched microdomains 1
translation: MGPEGSMLSGGPTQILLWGSLAAVAAFFLIIFLVFLCSSCDREKKPRPHSGDHETLMNMPSDKEVFSRSVTSLATDAPVSSEQNGALTNGDILSEDSAMTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPESAVDTMLNERCADADQGLGMEGPYEVLKDSSSQENMVEDCLYETVKEIKDMAAAAHPGQGHSIRSKSTSALKELPGPQVNGKTNFAEYASVDRNKKCRQSVNADAVLGNACDPEEEAPPPVPVKLLDENENLQEKAESTGEEESALEGTSETNKRLSALSYKSREDDPTLTEEEISAMYSSVNKQGQAGNKSGQSLKALESSYPSVPGAAQRSPSSGNHLYATVKDFEKTPSGGGALPPTAGRPSEGPEPDYEAIPTLNREEEKAAPDASSHRGPFPKENDYESIGDVQPCRDVTRL
SIO_010081: PAG1
subclass of: SO_0000673
so part of: PAG1
location: join(6406386..6406510,6408169..6408220,6411718..6411814,6414362..6414966,6418953..6419012,6422908..6423279)
location: region:6406386-6423279:1
so has part: feature:6406386-6406510:1:exon
so has part: feature:6408169-6408220:1:exon
so has part: feature:6411718-6411814:1:exon
so has part: feature:6414362-6414966:1:exon
so has part: feature:6418953-6419012:1:exon
so has part: feature:6422908-6423279:1:exon

XP_031297284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6406386-6406510:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6408169-6408220:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6411718-6411814:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6414362-6414966:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6418953-6419012:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6422908-6423279:1:exon

LOC116149605
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149605
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(6480391..6481971)
location: region:6480391-6481971:-1
so has part: feature:6480391-6481971:-1:exon

116149605
type: Gene
SIO_000068: ncbigene

position:6480391:-1
position: 6480391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6481971:-1
position: 6481971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6480391-6481971:-1:exon

LOC116149605
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149605
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 89% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149605
subclass of: SO_0000673
so part of: LOC116149605
location: complement(6480391..6481971)
location: region:6480391-6481971:-1
so has part: feature:6480391-6481971:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6480391-6481971:-1:exon

ZNF704
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ZNF704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6498865..6678692
location: region:6498865-6678692:1
so has part: feature:6498865-6678692:1:exon
subclass of: SO_0000010

105088527
type: Gene
SIO_000068: ncbigene

position:6498865:1
position: 6498865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6678692:1
position: 6678692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6498865-6678692:1:exon

ZNF704
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZNF704
product: zinc finger protein 704, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_031441427.1
SIO_010081: ZNF704
subclass of: SO_0000673
so part of: ZNF704
location: join(6498865..6500559,6508203..6520154)
location: region:6498865-6520154:1
so has part: feature:6498865-6500559:1:exon
so has part: feature:6508203-6520154:1:exon

position:6520154:1
position: 6520154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6498865-6500559:1:exon

position:6500559:1
position: 6500559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6508203-6520154:1:exon

position:6508203:1
position: 6508203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZNF704
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZNF704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 704 isoform X3
translation: MPGIAPKSRVGPPPPISRKLKSSRLARQRLAVNLSLPSPTWTASPTSSEVDPPPSKGNGQPRVSEGPRGWADGSAAPDFRRLWIGEVNPVRVLSARGDRRAARNGWRRGGRRWKIHNTNSSRRGTAAVGPERAGPAAGRMERSAAPRAPGRRRRRRRRGSQRAARSHHPRPRPPRSTAPVAAGRRRPRGRSSEAAARASAASAVAGAGRRLPQPPQPRPRAPATTAGARGGKRRKRRRGRWDKLSGSARRRAAARSGMQARRLPSAPAWAAVGERRAEPPAPRRAGPGRRSAGAPGPPAPGPGPGRARPQRDGGHAAAAAQRRDRPPSGRRGPAAALVSGLCLLLLGEEEREEEGGSRRRRGLGRVQAKPEGARRRRSDDEEERTRRSSSRWGRPTTTTRTARSAFVAWAPDARSPRAGPGAFEGDQGGLRGKELRRSCLCIAPR
SIO_010081: ZNF704
subclass of: SO_0000673
so part of: ZNF704
location: join(6499287..6500559,6508203..6508267)
location: region:6499287-6508267:1
so has part: feature:6499287-6500559:1:exon
so has part: feature:6508203-6508267:1:exon

XP_031297287.1
type: Protein
SIO_000068: ncbiprotein

position:6499287:1
position: 6499287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6508267:1
position: 6508267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6499287-6500559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6508203-6508267:1:exon

ZNF704
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZNF704
product: zinc finger protein 704, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_031441426.1
SIO_010081: ZNF704
subclass of: SO_0000673
so part of: ZNF704
location: join(6500108..6500559,6546612..6546853,6636726..6636829,6641499..6641731,6652487..6652587,6658341..6658608,6661006..6661110,6661885..6663642)
location: region:6500108-6663642:1
so has part: feature:6500108-6500559:1:exon
so has part: feature:6546612-6546853:1:exon
so has part: feature:6636726-6636829:1:exon
so has part: feature:6641499-6641731:1:exon
so has part: feature:6652487-6652587:1:exon
so has part: feature:6658341-6658608:1:exon
so has part: feature:6661006-6661110:1:exon
so has part: feature:6661885-6663642:1:exon

position:6500108:1
position: 6500108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6663642:1
position: 6663642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6500108-6500559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6546612-6546853:1:exon

position:6546612:1
position: 6546612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6546853:1
position: 6546853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6636726-6636829:1:exon

position:6636726:1
position: 6636726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6636829:1
position: 6636829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6641499-6641731:1:exon

position:6641499:1
position: 6641499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6641731:1
position: 6641731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6652487-6652587:1:exon

position:6652487:1
position: 6652487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6652587:1
position: 6652587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6658341-6658608:1:exon

position:6658341:1
position: 6658341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6658608:1
position: 6658608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6661006-6661110:1:exon

position:6661006:1
position: 6661006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6661110:1
position: 6661110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6661885-6663642:1:exon

position:6661885:1
position: 6661885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZNF704
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZNF704
product: zinc finger protein 704, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031441425.1
SIO_010081: ZNF704
subclass of: SO_0000673
so part of: ZNF704
location: join(6500110..6500559,6546612..6546853,6636726..6636829,6641499..6641731,6652487..6652587,6658341..6658608,6661006..6661110,6664649..6664746,6665840..6678692)
location: region:6500110-6678692:1
so has part: feature:6500110-6500559:1:exon
so has part: feature:6546612-6546853:1:exon
so has part: feature:6636726-6636829:1:exon
so has part: feature:6641499-6641731:1:exon
so has part: feature:6652487-6652587:1:exon
so has part: feature:6658341-6658608:1:exon
so has part: feature:6661006-6661110:1:exon
so has part: feature:6664649-6664746:1:exon
so has part: feature:6665840-6678692:1:exon

position:6500110:1
position: 6500110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6500110-6500559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6546612-6546853:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6636726-6636829:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6641499-6641731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6652487-6652587:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6658341-6658608:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6661006-6661110:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6664649-6664746:1:exon

position:6664649:1
position: 6664649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6664746:1
position: 6664746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6665840-6678692:1:exon

position:6665840:1
position: 6665840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZNF704
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZNF704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 704 isoform X1
translation: MEATLPPPRSAGTGPPRAAGAPPPPSSPVSACCFSGRKRGKRRAGAGGGGGSGECRRSPRGRGGGGVTTRKRGRGGRRRGGDGRRRRRGRRGAPSWPGPRTRAPQGPARARLKVGSVKREMTFTFQPEDLKRDSSKKMSHQHLFPLAMEEDVKTADTKKANRVLDHEKENTRSICLLEQKRKVVSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPPVRQNEGLSGSWKEAGGVPSSSSSSGYWSWSAPQRPVQPVHASPPLSADSFKPFRSPAPPDDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRAGDSDYSDGEEDFYYTEIKLNTDSVADGLSSLAPVSPSQSLASPPTFPIPDSSRTEAPCAKTETKLMTPLSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNSSSFSISWQSPPVTFTGIPVSPTHSHPVGTGEQRQHTHTVLSSPPRGTVSLRKPRGEGKKCRKVYGMENRDMWCTACRWKKACQRFTD
SIO_010081: ZNF704
subclass of: SO_0000673
so part of: ZNF704
location: join(6500221..6500559,6546612..6546853,6636726..6636829,6641499..6641731,6652487..6652587,6658341..6658608,6661006..6661110,6664649..6664746,6665840..6665951)
location: region:6500221-6665951:1
so has part: feature:6500221-6500559:1:exon
so has part: feature:6546612-6546853:1:exon
so has part: feature:6636726-6636829:1:exon
so has part: feature:6641499-6641731:1:exon
so has part: feature:6652487-6652587:1:exon
so has part: feature:6658341-6658608:1:exon
so has part: feature:6661006-6661110:1:exon
so has part: feature:6664649-6664746:1:exon
so has part: feature:6665840-6665951:1:exon

XP_031297285.1
type: Protein
SIO_000068: ncbiprotein

position:6500221:1
position: 6500221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6665951:1
position: 6665951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6500221-6500559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6546612-6546853:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6636726-6636829:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6641499-6641731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6652487-6652587:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6658341-6658608:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6661006-6661110:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6664649-6664746:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6665840-6665951:1:exon

ZNF704
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZNF704
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 704 isoform X2
translation: MEATLPPPRSAGTGPPRAAGAPPPPSSPVSACCFSGRKRGKRRAGAGGGGGSGECRRSPRGRGGGGVTTRKRGRGGRRRGGDGRRRRRGRRGAPSWPGPRTRAPQGPARARLKVGSVKREMTFTFQPEDLKRDSSKKMSHQHLFPLAMEEDVKTADTKKANRVLDHEKENTRSICLLEQKRKVVSSNIDVPPARKSSEELDMDKVTAAMVLTSLSTSPLVRSPPVRQNEGLSGSWKEAGGVPSSSSSSGYWSWSAPQRPVQPVHASPPLSADSFKPFRSPAPPDDGIDEAEASNLLFDEPIPRKRKNSMKVMFKCLWKNCGKVLSTAAGIQKHIRTIHLGRAGDSDYSDGEEDFYYTEIKLNTDSVADGLSSLAPVSPSQSLASPPTFPIPDSSRTEAPCAKTETKLMTPLSRSAPTTLYLVHTDHAYQATPPVTIPGSAKFTPNSSSFSISWQSPPVTFTGIPDLTKASYCNRWRFPEVSSQY
SIO_010081: ZNF704
subclass of: SO_0000673
so part of: ZNF704
location: join(6500221..6500559,6546612..6546853,6636726..6636829,6641499..6641731,6652487..6652587,6658341..6658608,6661006..6661110,6661885..6661947)
location: region:6500221-6661947:1
so has part: feature:6500221-6500559:1:exon
so has part: feature:6546612-6546853:1:exon
so has part: feature:6636726-6636829:1:exon
so has part: feature:6641499-6641731:1:exon
so has part: feature:6652487-6652587:1:exon
so has part: feature:6658341-6658608:1:exon
so has part: feature:6661006-6661110:1:exon
so has part: feature:6661885-6661947:1:exon

XP_031297286.1
type: Protein
SIO_000068: ncbiprotein

position:6661947:1
position: 6661947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6500221-6500559:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6546612-6546853:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6636726-6636829:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6641499-6641731:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6652487-6652587:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6658341-6658608:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6661006-6661110:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6661885-6661947:1:exon

TRNAT-AGU
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAT-AGU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(6520223..6520294)
location: region:6520223-6520294:-1
so has part: feature:6520223-6520294:-1:exon
subclass of: SO_0000663

116149703
type: Gene
SIO_000068: ncbigene

position:6520223:-1
position: 6520223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6520294:-1
position: 6520294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6520223-6520294:-1:exon

TRNAT-AGU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAT-AGU
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6520260..6520262),aa:Thr, seq:agt)
SIO_010081: TRNAT-AGU
subclass of: SO_0000673
so part of: TRNAT-AGU
location: complement(6520223..6520294)
location: region:6520223-6520294:-1
so has part: feature:6520223-6520294:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6520223-6520294:-1:exon

TRNAT-GGU
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAT-GGU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 6668091..6668162
location: region:6668091-6668162:1
so has part: feature:6668091-6668162:1:exon
subclass of: SO_0000663

116149711
type: Gene
SIO_000068: ncbigene

position:6668091:1
position: 6668091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6668162:1
position: 6668162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6668091-6668162:1:exon

TRNAT-GGU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAT-GGU
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA threonine (anticodon GGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:6668123..6668125,aa:Thr,seq:ggt)
SIO_010081: TRNAT-GGU
subclass of: SO_0000673
so part of: TRNAT-GGU
location: 6668091..6668162
location: region:6668091-6668162:1
so has part: feature:6668091-6668162:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6668091-6668162:1:exon

LOC116149626
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149626
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6735285..6754382
location: region:6735285-6754382:1
so has part: feature:6735285-6754382:1:exon
subclass of: SO_0000011

116149626
type: Gene
SIO_000068: ncbigene

position:6735285:1
position: 6735285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6754382:1
position: 6754382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6735285-6754382:1:exon

LOC116149626
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149626
product: uncharacterized LOC116149626, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133235.1
SIO_010081: LOC116149626
subclass of: SO_0000673
so part of: LOC116149626
location: join(6735285..6735888,6748489..6748754,6749013..6753049,6753264..6754382)
location: region:6735285-6754382:1
so has part: feature:6735285-6735888:1:exon
so has part: feature:6748489-6748754:1:exon
so has part: feature:6749013-6753049:1:exon
so has part: feature:6753264-6754382:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6735285-6735888:1:exon

position:6735888:1
position: 6735888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6748489-6748754:1:exon

position:6748489:1
position: 6748489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6748754:1
position: 6748754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6749013-6753049:1:exon

position:6749013:1
position: 6749013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6753049:1
position: 6753049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6753264-6754382:1:exon

position:6753264:1
position: 6753264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149626
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149626
product: uncharacterized LOC116149626, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_004133236.1
SIO_010081: LOC116149626
subclass of: SO_0000673
so part of: LOC116149626
location: join(6735286..6735888,6749013..6753049,6753264..6754382)
location: region:6735286-6754382:1
so has part: feature:6735286-6735888:1:exon
so has part: feature:6749013-6753049:1:exon
so has part: feature:6753264-6754382:1:exon

position:6735286:1
position: 6735286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6735286-6735888:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6749013-6753049:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6753264-6754382:1:exon

ZBTB10
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ZBTB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6771030..6798507)
location: region:6771030-6798507:-1
so has part: feature:6771030-6798507:-1:exon
subclass of: SO_0000010

105088528
type: Gene
SIO_000068: ncbigene

position:6771030:-1
position: 6771030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6798507:-1
position: 6798507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6771030-6798507:-1:exon

ZBTB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZBTB10
product: zinc finger and BTB domain containing 10, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_031441428.1
SIO_010081: ZBTB10
subclass of: SO_0000673
so part of: ZBTB10
location: complement(join(6771030..6775919,6776152..6776324,6776624..6776704,6779746..6779844,6787595..6788483,6797388..6798507))
location: region:6771030-6798507:-1
so has part: feature:6797388-6798507:-1:exon
so has part: feature:6787595-6788483:-1:exon
so has part: feature:6779746-6779844:-1:exon
so has part: feature:6776624-6776704:-1:exon
so has part: feature:6776152-6776324:-1:exon
so has part: feature:6771030-6775919:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6797388-6798507:-1:exon

position:6797388:-1
position: 6797388
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6787595-6788483:-1:exon

position:6787595:-1
position: 6787595
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6788483:-1
position: 6788483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6779746-6779844:-1:exon

position:6779746:-1
position: 6779746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6779844:-1
position: 6779844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6776624-6776704:-1:exon

position:6776624:-1
position: 6776624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6776704:-1
position: 6776704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6776152-6776324:-1:exon

position:6776152:-1
position: 6776152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6776324:-1
position: 6776324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6771030-6775919:-1:exon

position:6775919:-1
position: 6775919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZBTB10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZBTB10
product: zinc finger and BTB domain containing 10, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
transcript id: XM_010979393.2
SIO_010081: ZBTB10
subclass of: SO_0000673
so part of: ZBTB10
location: complement(join(6771030..6775919,6776152..6776324,6776519..6776704,6779746..6779844,6787595..6788483,6797388..6798507))
location: region:6771030-6798507:-1
so has part: feature:6797388-6798507:-1:exon
so has part: feature:6787595-6788483:-1:exon
so has part: feature:6779746-6779844:-1:exon
so has part: feature:6776519-6776704:-1:exon
so has part: feature:6776152-6776324:-1:exon
so has part: feature:6771030-6775919:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6797388-6798507:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6787595-6788483:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6779746-6779844:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6776519-6776704:-1:exon

position:6776519:-1
position: 6776519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6776152-6776324:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6771030-6775919:-1:exon

ZBTB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZBTB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 10 isoform X2
translation: MSFSEMNRRTLAFRGGGLVTASAGGGGGSANNNVGGEASAWPQQPQPRQPQPPAPQQLNGRGADEEVELEGLEPQDLEASAGAATAAEEAKELLLPQDAGGPTSLGGGGAGGPLLAERNRRTLAFRGGGGGGGLGNNGRSRGRPETSAWPLRHFNGRGPAAVELELDALEGKELMPDGASLSDSTEDEEEGASLGDGSGAEGGSCSSSRRSGGDGGDEAEGSGVGVGEGETVQQFPLARPKSLMQKLQCSFQTSWLKDFPWLRYSKDTGLMSCGWCQKTPEDGGSGDLPQVGHDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQEPEMPSEEGYCDFNSRPNENSYCYQLLRQLNEQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNTTHLDIAAVQGFSVILDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVVVDYNNRKPVNRDGLSSSRDQKTASFWATRNLTNLASNVKIENDGCNVDEGQMENYQMNDSSWVQDGSPELAENETQGQTKVFIWNNMGSQGIQETGKTRRKTQATKRFIYNIPPNNETNLEDCSVMQPPVTYPEEDLSFIKEEPDLDGALLSGPDCDRNVNANLLAEAGSGQDGGDAVVLGPSHDFKYGLMPGPSSDFKYGLLPGESSLIMNKLKCPHCSYVAKYRRTLKRHLLIHTGIRSFSCDTCGKLFTRREHVKRHALVHKKDKKYKCMVCKKIFMLAASVGIRHGSRRYGVCTECTDKSQQGGQESVDQGQDTDFPRDEEFEENGGEADEELVDDGEDQNDASRWDESGDVCMSLDD
SIO_010081: ZBTB10
subclass of: SO_0000673
so part of: ZBTB10
location: complement(join(6775617..6775919,6776152..6776324,6776624..6776704,6779746..6779844,6787595..6788483,6797388..6798362))
location: region:6775617-6798362:-1
so has part: feature:6797388-6798362:-1:exon
so has part: feature:6787595-6788483:-1:exon
so has part: feature:6779746-6779844:-1:exon
so has part: feature:6776624-6776704:-1:exon
so has part: feature:6776152-6776324:-1:exon
so has part: feature:6775617-6775919:-1:exon

XP_031297288.1
type: Protein
SIO_000068: ncbiprotein

position:6775617:-1
position: 6775617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6798362:-1
position: 6798362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6797388-6798362:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6787595-6788483:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6779746-6779844:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6776624-6776704:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6776152-6776324:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6775617-6775919:-1:exon

ZBTB10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZBTB10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 10 isoform X1
translation: MSFSEMNRRTLAFRGGGLVTASAGGGGGSANNNVGGEASAWPQQPQPRQPQPPAPQQLNGRGADEEVELEGLEPQDLEASAGAATAAEEAKELLLPQDAGGPTSLGGGGAGGPLLAERNRRTLAFRGGGGGGGLGNNGRSRGRPETSAWPLRHFNGRGPAAVELELDALEGKELMPDGASLSDSTEDEEEGASLGDGSGAEGGSCSSSRRSGGDGGDEAEGSGVGVGEGETVQQFPLARPKSLMQKLQCSFQTSWLKDFPWLRYSKDTGLMSCGWCQKTPEDGGSGDLPQVGHDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQEPEMPSEEGYCDFNSRPNENSYCYQLLRQLNEQRKKGILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCFSNKESPNQNNTTHLDIAAVQGFSVILDFLYSGNLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVVVDYNNRKPVNRDGLSSSRDQKTASFWATRNLTNLASNVKIENDGCNVDEGQMENYQMNDSSWVQDGSPELAENETQGQTKVFIWNNMGSQGIQETGKTRRKTQATKRFIYNIPPNNETNLEDCSVMQPPVTYPEEDLSFIKEEPDLDGALLSGPDCDRNVNANLLAEAGSGQDGGDAVVLGPSHDFKYGLMPGPSSDFKYGLLPGTSNDFKYGLIPGASNDFKYGLLPESWPKQETWENGESSLIMNKLKCPHCSYVAKYRRTLKRHLLIHTGIRSFSCDTCGKLFTRREHVKRHALVHKKDKKYKCMVCKKIFMLAASVGIRHGSRRYGVCTECTDKSQQGGQESVDQGQDTDFPRDEEFEENGGEADEELVDDGEDQNDASRWDESGDVCMSLDD
SIO_010081: ZBTB10
subclass of: SO_0000673
so part of: ZBTB10
location: complement(join(6775617..6775919,6776152..6776324,6776519..6776704,6779746..6779844,6787595..6788483,6797388..6798362))
location: region:6775617-6798362:-1
so has part: feature:6797388-6798362:-1:exon
so has part: feature:6787595-6788483:-1:exon
so has part: feature:6779746-6779844:-1:exon
so has part: feature:6776519-6776704:-1:exon
so has part: feature:6776152-6776324:-1:exon
so has part: feature:6775617-6775919:-1:exon

XP_010977695.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6797388-6798362:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6787595-6788483:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6779746-6779844:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6776519-6776704:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6776152-6776324:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6775617-6775919:-1:exon

TRNAV-AAC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAV-AAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(6958983..6959054)
location: region:6958983-6959054:-1
so has part: feature:6958983-6959054:-1:exon
subclass of: SO_0000663

116149704
type: Gene
SIO_000068: ncbigene

position:6958983:-1
position: 6958983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6959054:-1
position: 6959054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6958983-6959054:-1:exon

TRNAV-AAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAV-AAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA valine (anticodon AAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(6959020..6959022),aa:Val, seq:aac)
SIO_010081: TRNAV-AAC
subclass of: SO_0000673
so part of: TRNAV-AAC
location: complement(6958983..6959054)
location: region:6958983-6959054:-1
so has part: feature:6958983-6959054:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6958983-6959054:-1:exon

TPD52
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7037723..7118495
location: region:7037723-7118495:1
so has part: feature:7037723-7118495:1:exon
subclass of: SO_0000010

105088529
type: Gene
SIO_000068: ncbigene

position:7037723:1
position: 7037723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7118495:1
position: 7118495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7037723-7118495:1:exon

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_031441431.1
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7037723..7037943,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7118495)
location: region:7037723-7118495:1
so has part: feature:7037723-7037943:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7037723-7037943:1:exon

position:7037943:1
position: 7037943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

position:7093209:1
position: 7093209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7093324:1
position: 7093324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

position:7100074:1
position: 7100074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7100222:1
position: 7100222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

position:7101840:1
position: 7101840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7101941:1
position: 7101941
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

position:7102995:1
position: 7102995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7103021:1
position: 7103021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

position:7109777:1
position: 7109777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7109818:1
position: 7109818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

position:7111434:1
position: 7111434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7111482:1
position: 7111482
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7118495:1:exon

position:7115184:1
position: 7115184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031441432.1
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7037740..7037943,7093209..7093324,7100074..7100222,7101840..7101941,7111434..7111482,7115184..7118495)
location: region:7037740-7118495:1
so has part: feature:7037740-7037943:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

position:7037740:1
position: 7037740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7037740-7037943:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7115184-7118495:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X5
translation: MDRGEQGLLRTDPVPEEGEDAAAMIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7037925..7037943,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7115303)
location: region:7037925-7115303:1
so has part: feature:7037925-7037943:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_031297291.1
type: Protein
SIO_000068: ncbiprotein

position:7037925:1
position: 7037925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7115303:1
position: 7115303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7037925-7037943:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7115303:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X6
translation: MDRGEQGLLRTDPVPEEGEDAAAMIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7037925..7037943,7093209..7093324,7100074..7100222,7101840..7101941,7111434..7111482,7115184..7115303)
location: region:7037925-7115303:1
so has part: feature:7037925-7037943:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_031297292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7037925-7037943:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7115184-7115303:1:exon

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_010979396.2
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7038105..7038423,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7118495)
location: region:7038105-7118495:1
so has part: feature:7038105-7038423:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

position:7038105:1
position: 7038105
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7038105-7038423:1:exon

position:7038423:1
position: 7038423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7118495:1:exon

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031441430.1
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7063815..7063914,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7118495)
location: region:7063815-7118495:1
so has part: feature:7063815-7063914:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

position:7063815:1
position: 7063815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7063815-7063914:1:exon

position:7063914:1
position: 7063914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7118495:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X3
translation: MKLELLNGHAGASHCAGGALLPGGTGREGLLRTDPVPEEGEDAAAMIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7063830..7063914,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7115303)
location: region:7063830-7115303:1
so has part: feature:7063830-7063914:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_031297290.1
type: Protein
SIO_000068: ncbiprotein

position:7063830:1
position: 7063830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7063830-7063914:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7115303:1:exon

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_010979394.2
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7079059..7079350,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7118495)
location: region:7079059-7118495:1
so has part: feature:7079059-7079350:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

position:7079059:1
position: 7079059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7079059-7079350:1:exon

position:7079350:1
position: 7079350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7118495:1:exon

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_031441429.1
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7079061..7079350,7093209..7093324,7100074..7100222,7101840..7101941,7109777..7109818,7111434..7111482,7115184..7118495)
location: region:7079061-7118495:1
so has part: feature:7079061-7079350:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

position:7079061:1
position: 7079061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7079061-7079350:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7115184-7118495:1:exon

TPD52
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TPD52
product: tumor protein D52, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_010979395.2
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7079076..7079350,7093209..7093324,7100074..7100222,7101840..7101941,7111434..7111482,7115184..7118495)
location: region:7079076-7118495:1
so has part: feature:7079076-7079350:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7118495:1:exon

position:7079076:1
position: 7079076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7079076-7079350:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7115184-7118495:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X1
translation: MEFYEDYQSPFDFNTGVNKNYLYLSPSGNASPPGSPALQKFGLLRTDPVPEEGEDAAAMIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7079227..7079350,7093209..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7115303)
location: region:7079227-7115303:1
so has part: feature:7079227-7079350:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_010977696.1
type: Protein
SIO_000068: ncbiprotein

position:7079227:1
position: 7079227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7079227-7079350:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7115184-7115303:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X2
translation: MEFYEDYQSPFDFNTGVNKNYLYLSPSGNASPPGSPALQKFGLLRTDPVPEEGEDAAAMIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVNIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7079227..7079350,7093209..7093324,7100074..7100222,7101840..7101941,7109777..7109818,7111434..7111482,7115184..7115303)
location: region:7079227-7115303:1
so has part: feature:7079227-7079350:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_031297289.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7079227-7079350:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7115184-7115303:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X4
translation: MEFYEDYQSPFDFNTGVNKNYLYLSPSGNASPPGSPALQKFGLLRTDPVPEEGEDAAAMIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7079227..7079350,7093209..7093324,7100074..7100222,7101840..7101941,7111434..7111482,7115184..7115303)
location: region:7079227-7115303:1
so has part: feature:7079227-7079350:1:exon
so has part: feature:7093209-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_010977697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7079227-7079350:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7093209-7093324:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7115184-7115303:1:exon

TPD52
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TPD52
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tumor protein D52 isoform X7
translation: MIGTTESLSEEEQEELRKELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSLQELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKLQAFSHSFSIRSIQHSISMPAMRNSPTFKSFEEKVENLKSKVGGTKPAGGDFGEVLNSTANASATTTEPLPEQTQESL
SIO_010081: TPD52
subclass of: SO_0000673
so part of: TPD52
location: join(7093259..7093324,7100074..7100222,7101840..7101941,7102995..7103021,7109777..7109818,7111434..7111482,7115184..7115303)
location: region:7093259-7115303:1
so has part: feature:7093259-7093324:1:exon
so has part: feature:7100074-7100222:1:exon
so has part: feature:7101840-7101941:1:exon
so has part: feature:7102995-7103021:1:exon
so has part: feature:7109777-7109818:1:exon
so has part: feature:7111434-7111482:1:exon
so has part: feature:7115184-7115303:1:exon

XP_010977698.1
type: Protein
SIO_000068: ncbiprotein

position:7093259:1
position: 7093259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7093259-7093324:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7100074-7100222:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7101840-7101941:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7102995-7103021:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7109777-7109818:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7111434-7111482:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7115184-7115303:1:exon

MRPS28
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MRPS28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7120829..7250091
location: region:7120829-7250091:1
so has part: feature:7120829-7250091:1:exon
subclass of: SO_0000010

105088531
type: Gene
SIO_000068: ncbigene

position:7120829:1
position: 7120829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7250091:1
position: 7250091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7120829-7250091:1:exon

MRPS28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MRPS28
product: mitochondrial ribosomal protein S28, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XM_010979399.2
SIO_010081: MRPS28
subclass of: SO_0000673
so part of: MRPS28
location: join(7120829..7121072,7132257..7132438,7196453..7196879)
location: region:7120829-7196879:1
so has part: feature:7120829-7121072:1:exon
so has part: feature:7132257-7132438:1:exon
so has part: feature:7196453-7196879:1:exon

position:7196879:1
position: 7196879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7120829-7121072:1:exon

position:7121072:1
position: 7121072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7132257-7132438:1:exon

position:7132257:1
position: 7132257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7132438:1
position: 7132438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7196453-7196879:1:exon

position:7196453:1
position: 7196453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPS28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MRPS28
product: mitochondrial ribosomal protein S28, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_031441433.1
SIO_010081: MRPS28
subclass of: SO_0000673
so part of: MRPS28
location: join(7120830..7121072,7132257..7132438,7249835..7250091)
location: region:7120830-7250091:1
so has part: feature:7120830-7121072:1:exon
so has part: feature:7132257-7132438:1:exon
so has part: feature:7249835-7250091:1:exon

position:7120830:1
position: 7120830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7120830-7121072:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7132257-7132438:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7249835-7250091:1:exon

position:7249835:1
position: 7249835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MRPS28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MRPS28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S28, mitochondrial isoform X2
translation: MAALCRTRAVSAESHFLRVFLFSRPCRGAGTESGSGGESSDSTEPRTRPGGFASALERHSELQRKAELGRLRGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCKRPEVDGEKRGERMEQEDKMTSEVRTHLLKNYEMLQ
SIO_010081: MRPS28
subclass of: SO_0000673
so part of: MRPS28
location: join(7120857..7121072,7132257..7132438,7249835..7249922)
location: region:7120857-7249922:1
so has part: feature:7120857-7121072:1:exon
so has part: feature:7132257-7132438:1:exon
so has part: feature:7249835-7249922:1:exon

XP_031297293.1
type: Protein
SIO_000068: ncbiprotein

position:7120857:1
position: 7120857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7249922:1
position: 7249922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7120857-7121072:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7132257-7132438:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7249835-7249922:1:exon

MRPS28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MRPS28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 28S ribosomal protein S28, mitochondrial isoform X1
translation: MAALCRTRAVSAESHFLRVFLFSRPCRGAGTESGSGGESSDSTEPRTRPGGFASALERHSELQRKAELGRLRGSPKNVESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCKRPEVDGEKYQIGTRVRLRLLDLELTSRFLGATTDTTILEADAVLLGLQESKDSKSKEEHGEK
SIO_010081: MRPS28
subclass of: SO_0000673
so part of: MRPS28
location: join(7120857..7121072,7132257..7132438,7196453..7196621)
location: region:7120857-7196621:1
so has part: feature:7120857-7121072:1:exon
so has part: feature:7132257-7132438:1:exon
so has part: feature:7196453-7196621:1:exon

XP_010977701.1
type: Protein
SIO_000068: ncbiprotein

position:7196621:1
position: 7196621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7120857-7121072:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7132257-7132438:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7196453-7196621:1:exon

HEY1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: HEY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7304461..7308710
location: region:7304461-7308710:1
so has part: feature:7304461-7308710:1:exon
subclass of: SO_0000010

105088532
type: Gene
SIO_000068: ncbigene

position:7304461:1
position: 7304461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7308710:1
position: 7308710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7304461-7308710:1:exon

HEY1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HEY1
product: hes related family bHLH transcription factor with YRPW motif 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
transcript id: XM_010979400.2
SIO_010081: HEY1
subclass of: SO_0000673
so part of: HEY1
location: join(7304461..7305106,7305381..7305456,7305609..7305692,7305984..7306065,7306953..7308710)
location: region:7304461-7308710:1
so has part: feature:7304461-7305106:1:exon
so has part: feature:7305381-7305456:1:exon
so has part: feature:7305609-7305692:1:exon
so has part: feature:7305984-7306065:1:exon
so has part: feature:7306953-7308710:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7304461-7305106:1:exon

position:7305106:1
position: 7305106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7305381-7305456:1:exon

position:7305381:1
position: 7305381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7305456:1
position: 7305456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7305609-7305692:1:exon

position:7305609:1
position: 7305609
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7305692:1
position: 7305692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7305984-7306065:1:exon

position:7305984:1
position: 7305984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7306065:1
position: 7306065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7306953-7308710:1:exon

position:7306953:1
position: 7306953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

HEY1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HEY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hairy/enhancer-of-split related with YRPW motif protein 1 isoform X1
translation: MKRAHPEYSSSDSELDETIEVEKESADENGNLSSALGSMSPTTSSQILARKRRRGIIEKRRRDRINNSLSELRRLVPSAFEKQGSAKLEKAEILQMTVDHLKMLHTAGGKGYFDAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQREAASGAHAGLGHIPWGSAFGHHPHVAHPLLLPQNSHGNTGTTASPTEPHHQGRLATAHPEAPALRAPPSGGLGPVLPVVSSASKLSPPLLSSVASLSAFPFSFGSFHLLSPNALSPSAPTQAVNLGKPYRPWGTEIGAF
SIO_010081: HEY1
subclass of: SO_0000673
so part of: HEY1
location: join(7305018..7305106,7305381..7305456,7305609..7305692,7305984..7306065,7306953..7307536)
location: region:7305018-7307536:1
so has part: feature:7305018-7305106:1:exon
so has part: feature:7305381-7305456:1:exon
so has part: feature:7305609-7305692:1:exon
so has part: feature:7305984-7306065:1:exon
so has part: feature:7306953-7307536:1:exon

XP_010977702.2
type: Protein
SIO_000068: ncbiprotein

position:7305018:1
position: 7305018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7307536:1
position: 7307536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7305018-7305106:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7305381-7305456:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7305609-7305692:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7305984-7306065:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7306953-7307536:1:exon

HEY1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: HEY1
product: hes related family bHLH transcription factor with YRPW motif 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441434.1
SIO_010081: HEY1
subclass of: SO_0000673
so part of: HEY1
location: join(7306099..7306503,7306953..7308710)
location: region:7306099-7308710:1
so has part: feature:7306099-7306503:1:exon
so has part: feature:7306953-7308710:1:exon

position:7306099:1
position: 7306099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7306099-7306503:1:exon

position:7306503:1
position: 7306503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7306953-7308710:1:exon

HEY1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: HEY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hairy/enhancer-of-split related with YRPW motif protein 1 isoform X2
translation: MTLEERNLLRLTRENSTEGYFDAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQREAASGAHAGLGHIPWGSAFGHHPHVAHPLLLPQNSHGNTGTTASPTEPHHQGRLATAHPEAPALRAPPSGGLGPVLPVVSSASKLSPPLLSSVASLSAFPFSFGSFHLLSPNALSPSAPTQAVNLGKPYRPWGTEIGAF
SIO_010081: HEY1
subclass of: SO_0000673
so part of: HEY1
location: join(7306449..7306503,7306953..7307536)
location: region:7306449-7307536:1
so has part: feature:7306449-7306503:1:exon
so has part: feature:7306953-7307536:1:exon

XP_031297294.1
type: Protein
SIO_000068: ncbiprotein

position:7306449:1
position: 7306449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7306449-7306503:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7306953-7307536:1:exon

STMN2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: STMN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7365691..7407455)
location: region:7365691-7407455:-1
so has part: feature:7365691-7407455:-1:exon
subclass of: SO_0000010

105088533
type: Gene
SIO_000068: ncbigene

position:7365691:-1
position: 7365691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7407455:-1
position: 7407455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7365691-7407455:-1:exon

STMN2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: STMN2
product: stathmin 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_010979401.2
SIO_010081: STMN2
subclass of: SO_0000673
so part of: STMN2
location: complement(join(7365691..7367042,7372915..7373106,7385008..7385180,7389089..7389184,7407077..7407455))
location: region:7365691-7407455:-1
so has part: feature:7407077-7407455:-1:exon
so has part: feature:7389089-7389184:-1:exon
so has part: feature:7385008-7385180:-1:exon
so has part: feature:7372915-7373106:-1:exon
so has part: feature:7365691-7367042:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7407077-7407455:-1:exon

position:7407077:-1
position: 7407077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7389089-7389184:-1:exon

position:7389089:-1
position: 7389089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7389184:-1
position: 7389184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7385008-7385180:-1:exon

position:7385008:-1
position: 7385008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7385180:-1
position: 7385180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7372915-7373106:-1:exon

position:7372915:-1
position: 7372915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7373106:-1
position: 7373106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7365691-7367042:-1:exon

position:7367042:-1
position: 7367042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

STMN2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: STMN2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: stathmin-2
translation: MAKTAMAYKEKMKELSMLSLICSCFYPEPRNMNIYTYDDMEVKQINKRASGQAFELILKPPSPISEAPRTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG
SIO_010081: STMN2
subclass of: SO_0000673
so part of: STMN2
location: complement(join(7366983..7367042,7372915..7373106,7385008..7385180,7389089..7389184,7407077..7407095))
location: region:7366983-7407095:-1
so has part: feature:7407077-7407095:-1:exon
so has part: feature:7389089-7389184:-1:exon
so has part: feature:7385008-7385180:-1:exon
so has part: feature:7372915-7373106:-1:exon
so has part: feature:7366983-7367042:-1:exon

XP_010977703.1
type: Protein
SIO_000068: ncbiprotein

position:7366983:-1
position: 7366983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7407095:-1
position: 7407095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7407077-7407095:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7389089-7389184:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7385008-7385180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7372915-7373106:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7366983-7367042:-1:exon

LOC116149606
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149606
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7412544..7420802
location: region:7412544-7420802:1
so has part: feature:7412544-7420802:1:exon
subclass of: SO_0000011

116149606
type: Gene
SIO_000068: ncbigene

position:7412544:1
position: 7412544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7420802:1
position: 7420802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7412544-7420802:1:exon

LOC116149606
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149606
product: uncharacterized LOC116149606
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004133205.1
SIO_010081: LOC116149606
subclass of: SO_0000673
so part of: LOC116149606
location: join(7412544..7413503,7414881..7414972,7420327..7420802)
location: region:7412544-7420802:1
so has part: feature:7412544-7413503:1:exon
so has part: feature:7414881-7414972:1:exon
so has part: feature:7420327-7420802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7412544-7413503:1:exon

position:7413503:1
position: 7413503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7414881-7414972:1:exon

position:7414881:1
position: 7414881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7414972:1
position: 7414972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7420327-7420802:1:exon

position:7420327:1
position: 7420327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149681
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149681
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(7421449..7421551)
location: region:7421449-7421551:-1
so has part: feature:7421449-7421551:-1:exon

116149681
type: Gene
SIO_000068: ncbigene

position:7421449:-1
position: 7421449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7421551:-1
position: 7421551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7421449-7421551:-1:exon

LOC116149681
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149681
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00004
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC116149681
subclass of: SO_0000673
so part of: LOC116149681
location: complement(7421449..7421551)
location: region:7421449-7421551:-1
so has part: feature:7421449-7421551:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7421449-7421551:-1:exon

IL7
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: IL7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7838686..7880212
location: region:7838686-7880212:1
so has part: feature:7838686-7880212:1:exon
subclass of: SO_0000010

105088534
type: Gene
SIO_000068: ncbigene

position:7838686:1
position: 7838686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7880212:1
position: 7880212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7838686-7880212:1:exon

IL7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IL7
product: interleukin 7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 mRNAs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_010979404.2
SIO_010081: IL7
subclass of: SO_0000673
so part of: IL7
location: join(7838686..7838987,7844379..7844512,7871971..7872051,7873064..7873195,7875766..7875819,7877824..7880212)
location: region:7838686-7880212:1
so has part: feature:7838686-7838987:1:exon
so has part: feature:7844379-7844512:1:exon
so has part: feature:7871971-7872051:1:exon
so has part: feature:7873064-7873195:1:exon
so has part: feature:7875766-7875819:1:exon
so has part: feature:7877824-7880212:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7838686-7838987:1:exon

position:7838987:1
position: 7838987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7844379-7844512:1:exon

position:7844379:1
position: 7844379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7844512:1
position: 7844512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7871971-7872051:1:exon

position:7871971:1
position: 7871971
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7872051:1
position: 7872051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7873064-7873195:1:exon

position:7873064:1
position: 7873064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7873195:1
position: 7873195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7875766-7875819:1:exon

position:7875766:1
position: 7875766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7875819:1
position: 7875819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7877824-7880212:1:exon

position:7877824:1
position: 7877824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IL7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: IL7
product: interleukin 7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_010979403.2
SIO_010081: IL7
subclass of: SO_0000673
so part of: IL7
location: join(7838686..7838987,7844379..7844512,7873064..7873195,7875766..7875819,7877824..7880212)
location: region:7838686-7880212:1
so has part: feature:7838686-7838987:1:exon
so has part: feature:7844379-7844512:1:exon
so has part: feature:7873064-7873195:1:exon
so has part: feature:7875766-7875819:1:exon
so has part: feature:7877824-7880212:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7838686-7838987:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7844379-7844512:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7873064-7873195:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7875766-7875819:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7877824-7880212:1:exon

IL7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IL7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interleukin-7 isoform X1
translation: MFHVSFRYIFGIPPLILVLLPVASSDCDIGGKDGRVYQNVLMISIDDLDSMIDFDSNCLNNESNFFKKHSCGDNKEASFLYRAARKLKQFPKMNNSEDFNFHLSRVSQGTLQLLNCSSKVKGRKPPSLGEAQPTKNLEENKSVKEQKKLNDLCFLKILLQKIKTCWNKILRGAKEH
SIO_010081: IL7
subclass of: SO_0000673
so part of: IL7
location: join(7838978..7838987,7844379..7844512,7871971..7872051,7873064..7873195,7875766..7875819,7877824..7877943)
location: region:7838978-7877943:1
so has part: feature:7838978-7838987:1:exon
so has part: feature:7844379-7844512:1:exon
so has part: feature:7871971-7872051:1:exon
so has part: feature:7873064-7873195:1:exon
so has part: feature:7875766-7875819:1:exon
so has part: feature:7877824-7877943:1:exon

XP_010977706.1
type: Protein
SIO_000068: ncbiprotein

position:7838978:1
position: 7838978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7877943:1
position: 7877943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7838978-7838987:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7844379-7844512:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7871971-7872051:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7873064-7873195:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7875766-7875819:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7877824-7877943:1:exon

IL7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: IL7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: interleukin-7 isoform X2
translation: MFHVSFRYIFGIPPLILVLLPVASSDCDIGGKDGRVYQNVLMISIDDLEASFLYRAARKLKQFPKMNNSEDFNFHLSRVSQGTLQLLNCSSKVKGRKPPSLGEAQPTKNLEENKSVKEQKKLNDLCFLKILLQKIKTCWNKILRGAKEH
SIO_010081: IL7
subclass of: SO_0000673
so part of: IL7
location: join(7838978..7838987,7844379..7844512,7873064..7873195,7875766..7875819,7877824..7877943)
location: region:7838978-7877943:1
so has part: feature:7838978-7838987:1:exon
so has part: feature:7844379-7844512:1:exon
so has part: feature:7873064-7873195:1:exon
so has part: feature:7875766-7875819:1:exon
so has part: feature:7877824-7877943:1:exon

XP_010977705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7838978-7838987:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7844379-7844512:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7873064-7873195:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7875766-7875819:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7877824-7877943:1:exon

ZC2HC1A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ZC2HC1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7891531..7934696)
location: region:7891531-7934696:-1
so has part: feature:7891531-7934696:-1:exon
subclass of: SO_0000010

105088535
type: Gene
SIO_000068: ncbigene

position:7891531:-1
position: 7891531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7934696:-1
position: 7934696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7891531-7934696:-1:exon

ZC2HC1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZC2HC1A
product: zinc finger C2HC-type containing 1A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031441435.1
SIO_010081: ZC2HC1A
subclass of: SO_0000673
so part of: ZC2HC1A
location: complement(join(7891531..7894094,7900510..7900617,7912829..7912928,7913521..7913620,7918667..7918815,7921246..7921387,7922959..7923075,7925226..7925299,7934566..7934696))
location: region:7891531-7934696:-1
so has part: feature:7934566-7934696:-1:exon
so has part: feature:7925226-7925299:-1:exon
so has part: feature:7922959-7923075:-1:exon
so has part: feature:7921246-7921387:-1:exon
so has part: feature:7918667-7918815:-1:exon
so has part: feature:7913521-7913620:-1:exon
so has part: feature:7912829-7912928:-1:exon
so has part: feature:7900510-7900617:-1:exon
so has part: feature:7891531-7894094:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7934566-7934696:-1:exon

position:7934566:-1
position: 7934566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7925226-7925299:-1:exon

position:7925226:-1
position: 7925226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7925299:-1
position: 7925299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:7922959-7923075:-1:exon

position:7922959:-1
position: 7922959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7923075:-1
position: 7923075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:7921246-7921387:-1:exon

position:7921246:-1
position: 7921246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7921387:-1
position: 7921387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:7918667-7918815:-1:exon

position:7918667:-1
position: 7918667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7918815:-1
position: 7918815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:7913521-7913620:-1:exon

position:7913521:-1
position: 7913521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7913620:-1
position: 7913620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:7912829-7912928:-1:exon

position:7912829:-1
position: 7912829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7912928:-1
position: 7912928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:7900510-7900617:-1:exon

position:7900510:-1
position: 7900510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7900617:-1
position: 7900617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:7891531-7894094:-1:exon

position:7894094:-1
position: 7894094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZC2HC1A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ZC2HC1A
product: zinc finger C2HC-type containing 1A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031441436.1
SIO_010081: ZC2HC1A
subclass of: SO_0000673
so part of: ZC2HC1A
location: complement(join(7891531..7894094,7900510..7900617,7903984..7904100,7912829..7912928,7913521..7913620,7918667..7918815,7921246..7921387,7922959..7923075,7925226..7925299,7934566..7934689))
location: region:7891531-7934689:-1
so has part: feature:7934566-7934689:-1:exon
so has part: feature:7925226-7925299:-1:exon
so has part: feature:7922959-7923075:-1:exon
so has part: feature:7921246-7921387:-1:exon
so has part: feature:7918667-7918815:-1:exon
so has part: feature:7913521-7913620:-1:exon
so has part: feature:7912829-7912928:-1:exon
so has part: feature:7903984-7904100:-1:exon
so has part: feature:7900510-7900617:-1:exon
so has part: feature:7891531-7894094:-1:exon

position:7934689:-1
position: 7934689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7934566-7934689:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7925226-7925299:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7922959-7923075:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7921246-7921387:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7918667-7918815:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7913521-7913620:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7912829-7912928:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7903984-7904100:-1:exon

position:7903984:-1
position: 7903984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7904100:-1
position: 7904100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:7900510-7900617:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7891531-7894094:-1:exon

ZC2HC1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZC2HC1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger C2HC domain-containing protein 1A isoform X1
translation: MEGLEENGSVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPTYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKSASRTQYKPPALKKSNSPGTTSAGSSRLPQPSGTSKSVVGVPSGKVSSVSSFLGSKLQTLSPSHKGIAAPHVGANIKPRNSTPPSLARNPASGVLTSKRKTYTENYMTRPDGDYVSSLNGGNIKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL
SIO_010081: ZC2HC1A
subclass of: SO_0000673
so part of: ZC2HC1A
location: complement(join(7893929..7894094,7900510..7900617,7912829..7912928,7913521..7913620,7918667..7918815,7921246..7921387,7922959..7923075,7925226..7925299,7934566..7934581))
location: region:7893929-7934581:-1
so has part: feature:7934566-7934581:-1:exon
so has part: feature:7925226-7925299:-1:exon
so has part: feature:7922959-7923075:-1:exon
so has part: feature:7921246-7921387:-1:exon
so has part: feature:7918667-7918815:-1:exon
so has part: feature:7913521-7913620:-1:exon
so has part: feature:7912829-7912928:-1:exon
so has part: feature:7900510-7900617:-1:exon
so has part: feature:7893929-7894094:-1:exon

XP_031297295.1
type: Protein
SIO_000068: ncbiprotein

position:7893929:-1
position: 7893929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7934581:-1
position: 7934581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7934566-7934581:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7925226-7925299:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7922959-7923075:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7921246-7921387:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7918667-7918815:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7913521-7913620:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7912829-7912928:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7900510-7900617:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7893929-7894094:-1:exon

ZC2HC1A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ZC2HC1A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger C2HC domain-containing protein 1A isoform X2
translation: MEGLEENGSVQVGELLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPTYDPDYIQCPYCQRRFNENAADRHINFCKEQAARISNKGKFSTDTKGKSASRTQYKPPALKKSNSPGTTSAGSSRLPQPSGTSKSVVGVPSGKVSSVSSFLGSKLQTLSPSHKGIAAPHVGKMDKLGPPLRTGRHVQRLYDSDTKSDSAIKRHELLPIYKANIKPRNSTPPSLARNPASGVLTSKRKTYTENYMTRPDGDYVSSLNGGNIKGIEGNSTGHLPKFCHECGTKYPVEWAKFCCECGVRRMVL
SIO_010081: ZC2HC1A
subclass of: SO_0000673
so part of: ZC2HC1A
location: complement(join(7893929..7894094,7900510..7900617,7903984..7904100,7912829..7912928,7913521..7913620,7918667..7918815,7921246..7921387,7922959..7923075,7925226..7925299,7934566..7934581))
location: region:7893929-7934581:-1
so has part: feature:7934566-7934581:-1:exon
so has part: feature:7925226-7925299:-1:exon
so has part: feature:7922959-7923075:-1:exon
so has part: feature:7921246-7921387:-1:exon
so has part: feature:7918667-7918815:-1:exon
so has part: feature:7913521-7913620:-1:exon
so has part: feature:7912829-7912928:-1:exon
so has part: feature:7903984-7904100:-1:exon
so has part: feature:7900510-7900617:-1:exon
so has part: feature:7893929-7894094:-1:exon

XP_031297296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7934566-7934581:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7925226-7925299:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:7922959-7923075:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:7921246-7921387:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:7918667-7918815:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:7913521-7913620:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:7912829-7912928:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:7903984-7904100:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:7900510-7900617:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:7893929-7894094:-1:exon

LOC116149627
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149627
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 7934765..8041164
location: region:7934765-8041164:1
so has part: feature:7934765-8041164:1:exon
subclass of: SO_0000011

116149627
type: Gene
SIO_000068: ncbigene

position:7934765:1
position: 7934765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8041164:1
position: 8041164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7934765-8041164:1:exon

LOC116149627
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149627
product: uncharacterized LOC116149627, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133239.1
SIO_010081: LOC116149627
subclass of: SO_0000673
so part of: LOC116149627
location: join(7934765..7934825,7938247..7938375,8002292..8002348,8030091..8030169,8039570..8041164)
location: region:7934765-8041164:1
so has part: feature:7934765-7934825:1:exon
so has part: feature:7938247-7938375:1:exon
so has part: feature:8002292-8002348:1:exon
so has part: feature:8030091-8030169:1:exon
so has part: feature:8039570-8041164:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7934765-7934825:1:exon

position:7934825:1
position: 7934825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7938247-7938375:1:exon

position:7938247:1
position: 7938247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7938375:1
position: 7938375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8002292-8002348:1:exon

position:8002292:1
position: 8002292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8002348:1
position: 8002348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8030091-8030169:1:exon

position:8030091:1
position: 8030091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8030169:1
position: 8030169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8039570-8041164:1:exon

position:8039570:1
position: 8039570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149627
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149627
product: uncharacterized LOC116149627, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133237.1
SIO_010081: LOC116149627
subclass of: SO_0000673
so part of: LOC116149627
location: join(7934767..7935452,7938247..7938375,8002292..8002348,8030091..8030169,8039570..8041164)
location: region:7934767-8041164:1
so has part: feature:7934767-7935452:1:exon
so has part: feature:7938247-7938375:1:exon
so has part: feature:8002292-8002348:1:exon
so has part: feature:8030091-8030169:1:exon
so has part: feature:8039570-8041164:1:exon

position:7934767:1
position: 7934767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7934767-7935452:1:exon

position:7935452:1
position: 7935452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7938247-7938375:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8002292-8002348:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8030091-8030169:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8039570-8041164:1:exon

LOC116149627
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149627
product: uncharacterized LOC116149627, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_004133238.1
SIO_010081: LOC116149627
subclass of: SO_0000673
so part of: LOC116149627
location: join(7934770..7935452,7938247..7938375,8030091..8030169,8039570..8041164)
location: region:7934770-8041164:1
so has part: feature:7934770-7935452:1:exon
so has part: feature:7938247-7938375:1:exon
so has part: feature:8030091-8030169:1:exon
so has part: feature:8039570-8041164:1:exon

position:7934770:1
position: 7934770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7934770-7935452:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7938247-7938375:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8030091-8030169:1:exon