Camelus dromedarius isolate Drom800 breed African chromosome 27, CamDro3, whole genome shotgun sequence.
type: Entry
definition: Camelus dromedarius isolate Drom800 breed African chromosome 27, CamDro3, whole genome shotgun sequence.
sequence version: NC_044537.1
sequence date: 2019-10-23
sequence: sequence
division: CON
label: NC_044537.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA565028
dblink: SAMN03252735
keyword: WGS
keyword: RefSeq
source: Camelus dromedarius (Arabian camel)
organism: Camelus dromedarius
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Tylopoda; Camelidae; Camelus.
reference: 1
references: 30972949
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM016653.2.\nAssembly name: CamDro3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vetmeduni Vienna on\n2019/10/07. The original whole-genome shotgun project has the\naccession JWIN00000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vetmeduni Vienna\nAssembly Date :: FEB-2019\nAssembly Method :: ABySS v. 1.3.6; HiRise v. MAY-2017;\n PBJelly v. 15.8.24; Pilon v. 1.22; ABySS\n Sealer v. 2.0.2; HiRise v. MAY-2018;\n PBJelly v. 15.8.24; BBMAP-CallVariants v.\n 38.12; ABySS Sealer v. 2.1.0\nAssembly Name :: CamDro3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 65.0x\nSequencing Technology :: Illumina HiSeq; Dovetail Hi-C and\n Chicago; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Camelus dromedarius Annotation\n Release 101\nAnnotation Version :: 101\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.2\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 28600766
topology: linear
so has quality: SO_0000987
location: 1..28600766
location: region:1-28600766:1
RO_0002162: 9838

NC_044537
type: RefSeq
SIO_000068: refseq

PRJNA565028
type: BioProject
SIO_000068: bioproject

SAMN03252735
type: BioSample
SIO_000068: biosample

1
title: Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary
author: Elbers, J.P.
author: Rogers, M.F.
author: Perelman, P.L.
author: Proskuryakova, A.A.
author: Serdyukova, N.A.
author: Johnson, W.E.
author: Horin, P.
author: Corander, J.
author: Murphy, D.
author: Burger, P.A.
journal: Mol Ecol Resour
volume: 19
issue: 4
pages: 1015-1026
year: 2019
pubmed: 30972949

30972949
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28600766:1
position: 28600766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-28600766:1:source
so part of: sequence
organism: Camelus dromedarius
mol type: genomic DNA
isolate: Drom800
isolation source: isolated from an animal called Varis
chromosome: 27
sex: female
tissue type: blood
dev stage: adult
country: Austria: Eithental
collection date: 13-Jan-2013
collected by: Pamela Burger
breed: African

9838
type: Taxonomy
SIO_000068: taxonomy

LOC105089833
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105089833
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(46872..>60912)
location: region:46872-60912:-1
so has part: feature:46872-60912:-1:exon
subclass of: SO_0000010

105089833
type: Gene
SIO_000068: ncbigene

position:46872:-1
position: 46872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:60912:-1
position: 60912
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:46872-60912:-1:exon

LOC105089833
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105089833
product: dual specificity tyrosine-phosphorylation-regulated kinase 1A
inference: similar to RNA sequence, mRNA (same species):INSD:GADW01023343.1
inference: similar to RNA sequence, mRNA (same species):INSD:JT552835.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 294 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031440426.1
SIO_010081: LOC105089833
subclass of: SO_0000673
so part of: LOC105089833
location: complement(join(46872..>47305,<54612..54731,60716..>60912))
location: region:46872-60912:-1
so has part: feature:60716-60912:-1:exon
so has part: feature:54612-54731:-1:exon
so has part: feature:46872-47305:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:60716-60912:-1:exon

position:60716:-1
position: 60716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:54612-54731:-1:exon

position:54612:-1
position: 54612
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:54731:-1
position: 54731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:46872-47305:-1:exon

position:47305:-1
position: 47305
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

LOC105089833
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105089833
inference: similar to RNA sequence, mRNA (same species):INSD:GADW01023343.1
inference: similar to RNA sequence, mRNA (same species):INSD:JT552835.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 271 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 3
product: dual specificity tyrosine-phosphorylation-regulated kinase 1A
translation: MRLERRRCIQLGFRMVSVCCSAALCCLGGETSACKPSSVWLAPSFSFHAAGLQMAAQMSHSHQYSDHRQPDISDQQVSALSYPDQVQQLLTNQVMPDIVMLQRQMPQTFRDPATAPLRKLSIDLIKTYKHINEVYYAKKKRRHQQGQGDDSSHKKERKVYNDGYDDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDCVEQEWAAIKIIKNKKAFLNQAQREVRLLELMNKHDTEMKYYIGKQTDRQSNAP
SIO_010081: LOC105089833
subclass of: SO_0000673
so part of: LOC105089833
location: complement(join(47123..>47305,<54612..54731,60716..>60912))
location: region:47123-60912:-1
so has part: feature:60716-60912:-1:exon
so has part: feature:54612-54731:-1:exon
so has part: feature:47123-47305:-1:exon

XP_031296286.1
type: Protein
SIO_000068: ncbiprotein

position:47123:-1
position: 47123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:60716-60912:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54612-54731:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47123-47305:-1:exon

LOC105092999
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092999
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 68144..69082
location: region:68144-69082:1
so has part: feature:68144-69082:1:exon
subclass of: SO_0000011

105092999
type: Gene
SIO_000068: ncbigene

position:68144:1
position: 68144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69082:1
position: 69082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:68144-69082:1:exon

LOC105092999
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105092999
product: uncharacterized LOC105092999
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_004132887.1
SIO_010081: LOC105092999
subclass of: SO_0000673
so part of: LOC105092999
location: join(68144..68214,68670..68690,68803..69082)
location: region:68144-69082:1
so has part: feature:68144-68214:1:exon
so has part: feature:68670-68690:1:exon
so has part: feature:68803-69082:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:68144-68214:1:exon

position:68214:1
position: 68214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:68670-68690:1:exon

position:68670:1
position: 68670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:68690:1
position: 68690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:68803-69082:1:exon

position:68803:1
position: 68803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105105857
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105105857
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 143534..163794
location: region:143534-163794:1
so has part: feature:143534-163794:1:exon

105105857
type: Gene
SIO_000068: ncbigene

position:143534:1
position: 143534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:163794:1
position: 163794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143534-163794:1:exon

LOC105105857
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105105857
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105105857
subclass of: SO_0000673
so part of: LOC105105857
location: 143534..143677
location: region:143534-143677:1
so has part: feature:143534-143677:1:exon

position:143677:1
position: 143677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:143534-143677:1:exon

LOC105105857
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105105857
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105105857
subclass of: SO_0000673
so part of: LOC105105857
location: 146613..150488
location: region:146613-150488:1
so has part: feature:146613-150488:1:exon

position:146613:1
position: 146613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:150488:1
position: 150488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146613-150488:1:exon

LOC105105857
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105105857
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105105857
subclass of: SO_0000673
so part of: LOC105105857
location: 163654..163794
location: region:163654-163794:1
so has part: feature:163654-163794:1:exon

position:163654:1
position: 163654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163654-163794:1:exon

LOC116149299
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149299
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(515505..538228)
location: region:515505-538228:-1
so has part: feature:515505-538228:-1:exon
subclass of: SO_0000011

116149299
type: Gene
SIO_000068: ncbigene

position:515505:-1
position: 515505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:538228:-1
position: 538228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515505-538228:-1:exon

LOC116149299
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149299
product: uncharacterized LOC116149299
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_004132888.1
SIO_010081: LOC116149299
subclass of: SO_0000673
so part of: LOC116149299
location: complement(join(515505..515516,522981..522983,528313..528319,537764..538228))
location: region:515505-538228:-1
so has part: feature:537764-538228:-1:exon
so has part: feature:528313-528319:-1:exon
so has part: feature:522981-522983:-1:exon
so has part: feature:515505-515516:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:537764-538228:-1:exon

position:537764:-1
position: 537764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:528313-528319:-1:exon

position:528313:-1
position: 528313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:528319:-1
position: 528319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:522981-522983:-1:exon

position:522981:-1
position: 522981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:522983:-1
position: 522983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:515505-515516:-1:exon

position:515516:-1
position: 515516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105090794
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105090794
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(685017..689415)
location: region:685017-689415:-1
so has part: feature:685017-689415:-1:exon

105090794
type: Gene
SIO_000068: ncbigene

position:685017:-1
position: 685017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:689415:-1
position: 689415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685017-689415:-1:exon

LOC105090794
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105090794
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105090794
subclass of: SO_0000673
so part of: LOC105090794
location: complement(685017..686568)
location: region:685017-686568:-1
so has part: feature:685017-686568:-1:exon

position:686568:-1
position: 686568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:685017-686568:-1:exon

LOC105090794
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105090794
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 51% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105090794
subclass of: SO_0000673
so part of: LOC105090794
location: complement(689352..689415)
location: region:689352-689415:-1
so has part: feature:689352-689415:-1:exon

position:689352:-1
position: 689352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:689352-689415:-1:exon

LOC105090792
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105090792
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(725844..786840)
location: region:725844-786840:-1
so has part: feature:725844-786840:-1:exon
subclass of: SO_0000010

105090792
type: Gene
SIO_000068: ncbigene

position:725844:-1
position: 725844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:786840:-1
position: 786840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:725844-786840:-1:exon

LOC105090792
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC105090792
product: gamma-aminobutyric acid receptor subunit gamma-3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031440427.1
SIO_010081: LOC105090792
subclass of: SO_0000673
so part of: LOC105090792
location: complement(join(725844..727245,731941..732000,732312..732508,735916..736068,786347..786840))
location: region:725844-786840:-1
so has part: feature:786347-786840:-1:exon
so has part: feature:735916-736068:-1:exon
so has part: feature:732312-732508:-1:exon
so has part: feature:731941-732000:-1:exon
so has part: feature:725844-727245:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:786347-786840:-1:exon

position:786347:-1
position: 786347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:735916-736068:-1:exon

position:735916:-1
position: 735916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736068:-1
position: 736068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:732312-732508:-1:exon

position:732312:-1
position: 732312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:732508:-1
position: 732508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:731941-732000:-1:exon

position:731941:-1
position: 731941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:732000:-1
position: 732000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:725844-727245:-1:exon

position:727245:-1
position: 727245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105090792
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC105090792
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit gamma-3
translation: MFYKPTSSSVNVCSAFLDGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVKTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTTTRKKTSLLHPDSSRWIHERISLQAPSNYSLLDMRPPPPAVVTLNSSMYWQEFEDTCVYECLDGKDCQSFFCCYEECKSGSWRKGRIHIDILELDSYSRVFFPTSFLLFNLVYWVGYLYL
SIO_010081: LOC105090792
subclass of: SO_0000673
so part of: LOC105090792
location: complement(join(726964..727245,731941..732000,732312..732508,735916..736068,786347..786536))
location: region:726964-786536:-1
so has part: feature:786347-786536:-1:exon
so has part: feature:735916-736068:-1:exon
so has part: feature:732312-732508:-1:exon
so has part: feature:731941-732000:-1:exon
so has part: feature:726964-727245:-1:exon

XP_031296287.1
type: Protein
SIO_000068: ncbiprotein

position:726964:-1
position: 726964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:786536:-1
position: 786536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:786347-786536:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:735916-736068:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:732312-732508:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:731941-732000:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:726964-727245:-1:exon

LOC116149300
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(940920..1099118)
location: region:940920-1099118:-1
so has part: feature:940920-1099118:-1:exon
subclass of: SO_0000010

116149300
type: Gene
SIO_000068: ncbigene

position:940920:-1
position: 940920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1099118:-1
position: 1099118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:940920-1099118:-1:exon

LOC116149300
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149300
product: gamma-aminobutyric acid receptor subunit gamma-3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031440428.1
SIO_010081: LOC116149300
subclass of: SO_0000673
so part of: LOC116149300
location: complement(join(940920..941093,941795..942015,1099055..1099118))
location: region:940920-1099118:-1
so has part: feature:1099055-1099118:-1:exon
so has part: feature:941795-942015:-1:exon
so has part: feature:940920-941093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1099055-1099118:-1:exon

position:1099055:-1
position: 1099055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:941795-942015:-1:exon

position:941795:-1
position: 941795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:942015:-1
position: 942015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:940920-941093:-1:exon

position:941093:-1
position: 941093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit gamma-3-like
translation: MEYQIDIFFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHNFPMDEHSCPLIFSSCEY
SIO_010081: LOC116149300
subclass of: SO_0000673
so part of: LOC116149300
location: complement(join(941000..941093,941795..942015,1099055..1099057))
location: region:941000-1099057:-1
so has part: feature:1099055-1099057:-1:exon
so has part: feature:941795-942015:-1:exon
so has part: feature:941000-941093:-1:exon

XP_031296288.1
type: Protein
SIO_000068: ncbiprotein

position:941000:-1
position: 941000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1099057:-1
position: 1099057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1099055-1099057:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:941795-942015:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:941000-941093:-1:exon

LOC116149301
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149301
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1134528..1184278)
location: region:1134528-1184278:-1
so has part: feature:1134528-1184278:-1:exon
subclass of: SO_0000010

116149301
type: Gene
SIO_000068: ncbigene

position:1134528:-1
position: 1134528
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1184278:-1
position: 1184278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1134528-1184278:-1:exon

LOC116149301
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149301
product: gamma-aminobutyric acid receptor subunit gamma-3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031440429.1
SIO_010081: LOC116149301
subclass of: SO_0000673
so part of: LOC116149301
location: complement(join(1134528..1134818,1178661..1178809,1184056..1184278))
location: region:1134528-1184278:-1
so has part: feature:1184056-1184278:-1:exon
so has part: feature:1178661-1178809:-1:exon
so has part: feature:1134528-1134818:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1184056-1184278:-1:exon

position:1184056:-1
position: 1184056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1178661-1178809:-1:exon

position:1178661:-1
position: 1178661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1178809:-1
position: 1178809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1134528-1134818:-1:exon

position:1134818:-1
position: 1134818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149301
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149301
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit gamma-3-like
translation: MALKLLLLLLFLFSGLHARSRKVEEDEYEDSSSNQKWVLAPKSQDRDVTLILNKLLREYDKKLRPDIGLKPTVIDVDIYVNSIGPVSSINMVRRCFLF
SIO_010081: LOC116149301
subclass of: SO_0000673
so part of: LOC116149301
location: complement(join(1134727..1134818,1178661..1178809,1184056..1184111))
location: region:1134727-1184111:-1
so has part: feature:1184056-1184111:-1:exon
so has part: feature:1178661-1178809:-1:exon
so has part: feature:1134727-1134818:-1:exon

XP_031296289.1
type: Protein
SIO_000068: ncbiprotein

position:1134727:-1
position: 1134727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1184111:-1
position: 1184111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1184056-1184111:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1178661-1178809:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1134727-1134818:-1:exon

GABRA5
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(1203019..1282368)
location: region:1203019-1282368:-1
so has part: feature:1203019-1282368:-1:exon
subclass of: SO_0000010

105090790
type: Gene
SIO_000068: ncbigene

position:1203019:-1
position: 1203019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1282368:-1
position: 1282368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1203019-1282368:-1:exon

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 32 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031440434.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203019..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280235,1280609..1280668,1282237..1282355))
location: region:1203019-1282355:-1
so has part: feature:1282237-1282355:-1:exon
so has part: feature:1280609-1280668:-1:exon
so has part: feature:1280076-1280235:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203019-1204263:-1:exon

position:1282355:-1
position: 1282355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1282237-1282355:-1:exon

position:1282237:-1
position: 1282237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1280609-1280668:-1:exon

position:1280609:-1
position: 1280609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1280668:-1
position: 1280668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1280076-1280235:-1:exon

position:1280076:-1
position: 1280076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1280235:-1
position: 1280235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1267150-1267271:-1:exon

position:1267150:-1
position: 1267150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1267271:-1
position: 1267271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1265243-1265310:-1:exon

position:1265243:-1
position: 1265243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1265310:-1
position: 1265310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1264920-1265140:-1:exon

position:1264920:-1
position: 1264920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1265140:-1
position: 1265140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1231820-1231902:-1:exon

position:1231820:-1
position: 1231820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1231902:-1
position: 1231902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1213444-1213587:-1:exon

position:1213444:-1
position: 1213444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1213587:-1
position: 1213587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1210858-1211010:-1:exon

position:1210858:-1
position: 1210858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1211010:-1
position: 1211010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:1207656-1207867:-1:exon

position:1207656:-1
position: 1207656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1207867:-1
position: 1207867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:1203019-1204263:-1:exon

position:1204263:-1
position: 1204263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 32 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031440430.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203019..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280235,1280609..1280668,1281967..1282156))
location: region:1203019-1282156:-1
so has part: feature:1281967-1282156:-1:exon
so has part: feature:1280609-1280668:-1:exon
so has part: feature:1280076-1280235:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203019-1204263:-1:exon

position:1282156:-1
position: 1282156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1281967-1282156:-1:exon

position:1281967:-1
position: 1281967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1280609-1280668:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1280076-1280235:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1203019-1204263:-1:exon

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 32 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031440431.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203019..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280235,1280609..1280668,1281935..1282156))
location: region:1203019-1282156:-1
so has part: feature:1281935-1282156:-1:exon
so has part: feature:1280609-1280668:-1:exon
so has part: feature:1280076-1280235:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203019-1204263:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1281935-1282156:-1:exon

position:1281935:-1
position: 1281935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1280609-1280668:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1280076-1280235:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1203019-1204263:-1:exon

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 32 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_031440432.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203019..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280235,1280609..1280668,1281694..1281810))
location: region:1203019-1281810:-1
so has part: feature:1281694-1281810:-1:exon
so has part: feature:1280609-1280668:-1:exon
so has part: feature:1280076-1280235:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203019-1204263:-1:exon

position:1281810:-1
position: 1281810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1281694-1281810:-1:exon

position:1281694:-1
position: 1281694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1280609-1280668:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1280076-1280235:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:1203019-1204263:-1:exon

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031440435.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203058..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1282237..1282368))
location: region:1203058-1282368:-1
so has part: feature:1282237-1282368:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203058-1204263:-1:exon

position:1203058:-1
position: 1203058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1282237-1282368:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1203058-1204263:-1:exon

GABRA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRA5
product: gamma-aminobutyric acid type A receptor alpha5 subunit, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031440433.1
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203058..1204263,1207656..1207867,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280235,1280609..1280668,1281967..1282158))
location: region:1203058-1282158:-1
so has part: feature:1281967-1282158:-1:exon
so has part: feature:1280609-1280668:-1:exon
so has part: feature:1280076-1280235:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203058-1204263:-1:exon

position:1282158:-1
position: 1282158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1281967-1282158:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1280609-1280668:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1280076-1280235:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:1203058-1204263:-1:exon

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5 isoform X2
translation: MDNGMFSSFIMIKNLLLFCISMNLASHFGFSQMPTSSVKDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTLNKSTNAYTTGKMTHPPNMPKEQTPAGTANASVRPSEDKTSENKKTYNSISKIDKMSRIIFPVLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203970..1204263,1207656..1207867,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280161))
location: region:1203970-1280161:-1
so has part: feature:1280076-1280161:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203970-1204263:-1:exon

XP_031296293.1
type: Protein
SIO_000068: ncbiprotein

position:1203970:-1
position: 1203970
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1280161:-1
position: 1280161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1280076-1280161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1203970-1204263:-1:exon

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5 isoform X1
translation: MDNGMFSSFIMIKNLLLFCISMNLASHFGFSQMPTSSVKDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTLNKSTNAYTTGKMTHPPNMPKEQTPAGTANASVRPSEDKTSENKKTYNSISKIDKMSRIIFPVLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203970..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280161))
location: region:1203970-1280161:-1
so has part: feature:1280076-1280161:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203970-1204263:-1:exon

XP_031296290.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1280076-1280161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1203970-1204263:-1:exon

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5 isoform X1
translation: MDNGMFSSFIMIKNLLLFCISMNLASHFGFSQMPTSSVKDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTLNKSTNAYTTGKMTHPPNMPKEQTPAGTANASVRPSEDKTSENKKTYNSISKIDKMSRIIFPVLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203970..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280161))
location: region:1203970-1280161:-1
so has part: feature:1280076-1280161:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203970-1204263:-1:exon

XP_031296291.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1280076-1280161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1203970-1204263:-1:exon

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5 isoform X1
translation: MDNGMFSSFIMIKNLLLFCISMNLASHFGFSQMPTSSVKDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTLNKSTNAYTTGKMTHPPNMPKEQTPAGTANASVRPSEDKTSENKKTYNSISKIDKMSRIIFPVLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203970..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280161))
location: region:1203970-1280161:-1
so has part: feature:1280076-1280161:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203970-1204263:-1:exon

XP_031296292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1280076-1280161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1203970-1204263:-1:exon

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5 isoform X1
translation: MDNGMFSSFIMIKNLLLFCISMNLASHFGFSQMPTSSVKDETNDNITIFTRILDGLLDGYDNRLRPGLGERITQVRTDIYVTSFGPVSDTEMEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTLNKSTNAYTTGKMTHPPNMPKEQTPAGTANASVRPSEDKTSENKKTYNSISKIDKMSRIIFPVLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203970..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265310,1267150..1267271,1280076..1280161))
location: region:1203970-1280161:-1
so has part: feature:1280076-1280161:-1:exon
so has part: feature:1267150-1267271:-1:exon
so has part: feature:1265243-1265310:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203970-1204263:-1:exon

XP_031296294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1280076-1280161:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1267150-1267271:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1265243-1265310:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1203970-1204263:-1:exon

GABRA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit alpha-5 isoform X3
translation: MEYTIDVFFRQSWKDERLRFKGPMQRLPLNNLLASKIWTPDTFFHNGKKSIAHNMTTPNKLLRLEDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGTTKSVVVAEDGSRLNQYHLMGQTVGTENISTSTGEYTIMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKKALEAAKIKKKERELTLNKSTNAYTTGKMTHPPNMPKEQTPAGTANASVRPSEDKTSENKKTYNSISKIDKMSRIIFPVLFGTFNLVYWATYLNREPVIKGATSPK
SIO_010081: GABRA5
subclass of: SO_0000673
so part of: GABRA5
location: complement(join(1203970..1204263,1207656..1207867,1210858..1211010,1213444..1213587,1231820..1231902,1264920..1265140,1265243..1265245))
location: region:1203970-1265245:-1
so has part: feature:1265243-1265245:-1:exon
so has part: feature:1264920-1265140:-1:exon
so has part: feature:1231820-1231902:-1:exon
so has part: feature:1213444-1213587:-1:exon
so has part: feature:1210858-1211010:-1:exon
so has part: feature:1207656-1207867:-1:exon
so has part: feature:1203970-1204263:-1:exon

XP_031296295.1
type: Protein
SIO_000068: ncbiprotein

position:1265245:-1
position: 1265245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1265243-1265245:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1264920-1265140:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1231820-1231902:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1213444-1213587:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1210858-1211010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1207656-1207867:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1203970-1204263:-1:exon

GABRB3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: GABRB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1351602..1575238
location: region:1351602-1575238:1
so has part: feature:1351602-1575238:1:exon
subclass of: SO_0000010

105090789
type: Gene
SIO_000068: ncbigene

position:1351602:1
position: 1351602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1575238:1
position: 1575238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1351602-1575238:1:exon

GABRB3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRB3
product: gamma-aminobutyric acid type A receptor beta3 subunit, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440437.1
SIO_010081: GABRB3
subclass of: SO_0000673
so part of: GABRB3
location: join(1351602..1351716,1352561..1352652,1352868..1352935,1511641..1511861,1533625..1533707,1536408..1536545,1554039..1554191,1561835..1562079,1571870..1575238)
location: region:1351602-1575238:1
so has part: feature:1351602-1351716:1:exon
so has part: feature:1352561-1352652:1:exon
so has part: feature:1352868-1352935:1:exon
so has part: feature:1511641-1511861:1:exon
so has part: feature:1533625-1533707:1:exon
so has part: feature:1536408-1536545:1:exon
so has part: feature:1554039-1554191:1:exon
so has part: feature:1561835-1562079:1:exon
so has part: feature:1571870-1575238:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1351602-1351716:1:exon

position:1351716:1
position: 1351716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1352561-1352652:1:exon

position:1352561:1
position: 1352561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1352652:1
position: 1352652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1352868-1352935:1:exon

position:1352868:1
position: 1352868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1352935:1
position: 1352935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1511641-1511861:1:exon

position:1511641:1
position: 1511641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1511861:1
position: 1511861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1533625-1533707:1:exon

position:1533625:1
position: 1533625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1533707:1
position: 1533707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:1536408-1536545:1:exon

position:1536408:1
position: 1536408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1536545:1
position: 1536545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:1554039-1554191:1:exon

position:1554039:1
position: 1554039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1554191:1
position: 1554191
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:1561835-1562079:1:exon

position:1561835:1
position: 1561835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1562079:1
position: 1562079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:1571870-1575238:1:exon

position:1571870:1
position: 1571870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GABRB3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-3 isoform X2
translation: MCSGLRALLLLIWLSWTLGTRGSESRSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNRVDAHGNILLTSLEVHNEMNEVAGGVGDTRNSAISFDNSGIQYRKQSMPREGHVRHMGDRGIPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
SIO_010081: GABRB3
subclass of: SO_0000673
so part of: GABRB3
location: join(1351637..1351716,1352561..1352652,1352868..1352935,1511641..1511861,1533625..1533707,1536408..1536545,1554039..1554191,1561835..1562079,1571870..1572211)
location: region:1351637-1572211:1
so has part: feature:1351637-1351716:1:exon
so has part: feature:1352561-1352652:1:exon
so has part: feature:1352868-1352935:1:exon
so has part: feature:1511641-1511861:1:exon
so has part: feature:1533625-1533707:1:exon
so has part: feature:1536408-1536545:1:exon
so has part: feature:1554039-1554191:1:exon
so has part: feature:1561835-1562079:1:exon
so has part: feature:1571870-1572211:1:exon

XP_031296297.1
type: Protein
SIO_000068: ncbiprotein

position:1351637:1
position: 1351637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1572211:1
position: 1572211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1351637-1351716:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1352561-1352652:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1352868-1352935:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1511641-1511861:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1533625-1533707:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1536408-1536545:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1554039-1554191:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1561835-1562079:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1571870-1572211:1:exon

GABRB3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: GABRB3
product: gamma-aminobutyric acid type A receptor beta3 subunit, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 23 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_031440436.1
SIO_010081: GABRB3
subclass of: SO_0000673
so part of: GABRB3
location: join(1352246..1352431,1352561..1352652,1352868..1352935,1511641..1511861,1533625..1533707,1536408..1536545,1554039..1554191,1561835..1562079,1571870..1575238)
location: region:1352246-1575238:1
so has part: feature:1352246-1352431:1:exon
so has part: feature:1352561-1352652:1:exon
so has part: feature:1352868-1352935:1:exon
so has part: feature:1511641-1511861:1:exon
so has part: feature:1533625-1533707:1:exon
so has part: feature:1536408-1536545:1:exon
so has part: feature:1554039-1554191:1:exon
so has part: feature:1561835-1562079:1:exon
so has part: feature:1571870-1575238:1:exon

position:1352246:1
position: 1352246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1352246-1352431:1:exon

position:1352431:1
position: 1352431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1352561-1352652:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1352868-1352935:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1511641-1511861:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1533625-1533707:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1536408-1536545:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1554039-1554191:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1561835-1562079:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1571870-1575238:1:exon

GABRB3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: GABRB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gamma-aminobutyric acid receptor subunit beta-3 isoform X1
translation: MWGFAGGRLFGIFSAPVLVAVVCCAQSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPPVCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNRVDAHGNILLTSLEVHNEMNEVAGGVGDTRNSAISFDNSGIQYRKQSMPREGHVRHMGDRGIPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
SIO_010081: GABRB3
subclass of: SO_0000673
so part of: GABRB3
location: join(1352352..1352431,1352561..1352652,1352868..1352935,1511641..1511861,1533625..1533707,1536408..1536545,1554039..1554191,1561835..1562079,1571870..1572211)
location: region:1352352-1572211:1
so has part: feature:1352352-1352431:1:exon
so has part: feature:1352561-1352652:1:exon
so has part: feature:1352868-1352935:1:exon
so has part: feature:1511641-1511861:1:exon
so has part: feature:1533625-1533707:1:exon
so has part: feature:1536408-1536545:1:exon
so has part: feature:1554039-1554191:1:exon
so has part: feature:1561835-1562079:1:exon
so has part: feature:1571870-1572211:1:exon

XP_031296296.1
type: Protein
SIO_000068: ncbiprotein

position:1352352:1
position: 1352352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1352352-1352431:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1352561-1352652:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1352868-1352935:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1511641-1511861:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1533625-1533707:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:1536408-1536545:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:1554039-1554191:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:1561835-1562079:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:1571870-1572211:1:exon

TRNAE-UUC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAE-UUC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 1923568..1923639
location: region:1923568-1923639:1
so has part: feature:1923568-1923639:1:exon
subclass of: SO_0000663

116149461
type: Gene
SIO_000068: ncbigene

position:1923568:1
position: 1923568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1923639:1
position: 1923639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1923568-1923639:1:exon

TRNAE-UUC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAE-UUC
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:1923601..1923603,aa:Glu,seq:ttc)
SIO_010081: TRNAE-UUC
subclass of: SO_0000673
so part of: TRNAE-UUC
location: 1923568..1923639
location: region:1923568-1923639:1
so has part: feature:1923568-1923639:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1923568-1923639:1:exon

ATP10A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ATP10A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2109910..2268331
location: region:2109910-2268331:1
so has part: feature:2109910-2268331:1:exon
subclass of: SO_0000010

105090791
type: Gene
SIO_000068: ncbigene

position:2109910:1
position: 2109910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2268331:1
position: 2268331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2109910-2268331:1:exon

ATP10A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ATP10A
product: ATPase phospholipid transporting 10A (putative), transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_031440440.1
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: join(2109910..2110536,2174958..2175162,2213701..2213786,2223939..2224045,2224513..2224644,2225706..2225836,2227578..2227830,2230902..2231119,2233067..2233261,2234469..2235084,2240534..2240637,2240716..2240842,2246845..2247029,2252870..2253197,2255690..2255766,2260086..2260211,2264002..2264088,2266056..2266136,2266212..2266316,2266716..2266903,2267036..2268331)
location: region:2109910-2268331:1
so has part: feature:2109910-2110536:1:exon
so has part: feature:2174958-2175162:1:exon
so has part: feature:2213701-2213786:1:exon
so has part: feature:2223939-2224045:1:exon
so has part: feature:2224513-2224644:1:exon
so has part: feature:2225706-2225836:1:exon
so has part: feature:2227578-2227830:1:exon
so has part: feature:2230902-2231119:1:exon
so has part: feature:2233067-2233261:1:exon
so has part: feature:2234469-2235084:1:exon
so has part: feature:2240534-2240637:1:exon
so has part: feature:2240716-2240842:1:exon
so has part: feature:2246845-2247029:1:exon
so has part: feature:2252870-2253197:1:exon
so has part: feature:2255690-2255766:1:exon
so has part: feature:2260086-2260211:1:exon
so has part: feature:2264002-2264088:1:exon
so has part: feature:2266056-2266136:1:exon
so has part: feature:2266212-2266316:1:exon
so has part: feature:2266716-2266903:1:exon
so has part: feature:2267036-2268331:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2109910-2110536:1:exon

position:2110536:1
position: 2110536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2174958-2175162:1:exon

position:2174958:1
position: 2174958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2175162:1
position: 2175162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2213701-2213786:1:exon

position:2213701:1
position: 2213701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2213786:1
position: 2213786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2223939-2224045:1:exon

position:2223939:1
position: 2223939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2224045:1
position: 2224045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2224513-2224644:1:exon

position:2224513:1
position: 2224513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2224644:1
position: 2224644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2225706-2225836:1:exon

position:2225706:1
position: 2225706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2225836:1
position: 2225836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2227578-2227830:1:exon

position:2227578:1
position: 2227578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2227830:1
position: 2227830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2230902-2231119:1:exon

position:2230902:1
position: 2230902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2231119:1
position: 2231119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2233067-2233261:1:exon

position:2233067:1
position: 2233067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2233261:1
position: 2233261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2234469-2235084:1:exon

position:2234469:1
position: 2234469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2235084:1
position: 2235084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2240534-2240637:1:exon

position:2240534:1
position: 2240534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2240637:1
position: 2240637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2240716-2240842:1:exon

position:2240716:1
position: 2240716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2240842:1
position: 2240842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2246845-2247029:1:exon

position:2246845:1
position: 2246845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2247029:1
position: 2247029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:2252870-2253197:1:exon

position:2252870:1
position: 2252870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2253197:1
position: 2253197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:2255690-2255766:1:exon

position:2255690:1
position: 2255690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2255766:1
position: 2255766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:2260086-2260211:1:exon

position:2260086:1
position: 2260086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2260211:1
position: 2260211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:2264002-2264088:1:exon

position:2264002:1
position: 2264002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2264088:1
position: 2264088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2266056-2266136:1:exon

position:2266056:1
position: 2266056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2266136:1
position: 2266136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:2266212-2266316:1:exon

position:2266212:1
position: 2266212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2266316:1
position: 2266316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:2266716-2266903:1:exon

position:2266716:1
position: 2266716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2266903:1
position: 2266903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:2267036-2268331:1:exon

position:2267036:1
position: 2267036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATP10A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ATP10A
product: ATPase phospholipid transporting 10A (putative), transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_031440438.1
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: join(2109911..2110536,2174958..2175162,2213701..2213786,2223939..2224045,2224513..2224644,2225706..2225836,2227578..2227830,2230902..2231119,2233067..2233261,2234469..2235084,2240534..2240637,2240716..2240842,2246845..2247029,2252870..2253197,2255690..2255766,2260086..2260211,2263888..2264088,2266056..2266136,2266212..2266316,2266716..2266903,2267036..2268331)
location: region:2109911-2268331:1
so has part: feature:2109911-2110536:1:exon
so has part: feature:2174958-2175162:1:exon
so has part: feature:2213701-2213786:1:exon
so has part: feature:2223939-2224045:1:exon
so has part: feature:2224513-2224644:1:exon
so has part: feature:2225706-2225836:1:exon
so has part: feature:2227578-2227830:1:exon
so has part: feature:2230902-2231119:1:exon
so has part: feature:2233067-2233261:1:exon
so has part: feature:2234469-2235084:1:exon
so has part: feature:2240534-2240637:1:exon
so has part: feature:2240716-2240842:1:exon
so has part: feature:2246845-2247029:1:exon
so has part: feature:2252870-2253197:1:exon
so has part: feature:2255690-2255766:1:exon
so has part: feature:2260086-2260211:1:exon
so has part: feature:2263888-2264088:1:exon
so has part: feature:2266056-2266136:1:exon
so has part: feature:2266212-2266316:1:exon
so has part: feature:2266716-2266903:1:exon
so has part: feature:2267036-2268331:1:exon

position:2109911:1
position: 2109911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2109911-2110536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2174958-2175162:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2213701-2213786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2223939-2224045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2224513-2224644:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2225706-2225836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2227578-2227830:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2230902-2231119:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2233067-2233261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2234469-2235084:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2240534-2240637:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2240716-2240842:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2246845-2247029:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2252870-2253197:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2255690-2255766:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2260086-2260211:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2263888-2264088:1:exon

position:2263888:1
position: 2263888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:2266056-2266136:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2266212-2266316:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2266716-2266903:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2267036-2268331:1:exon

ATP10A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ATP10A
product: ATPase phospholipid transporting 10A (putative), transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_031440439.1
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: join(2109911..2110536,2174958..2175162,2213701..2213786,2223939..2224045,2224513..2224644,2225706..2225836,2227578..2227830,2230902..2231119,2233067..2233261,2234472..2235084,2240534..2240637,2240716..2240842,2246845..2247029,2252870..2253197,2255690..2255766,2260086..2260211,2263888..2264088,2266056..2266136,2266212..2266316,2266716..2266903,2267036..2268331)
location: region:2109911-2268331:1
so has part: feature:2109911-2110536:1:exon
so has part: feature:2174958-2175162:1:exon
so has part: feature:2213701-2213786:1:exon
so has part: feature:2223939-2224045:1:exon
so has part: feature:2224513-2224644:1:exon
so has part: feature:2225706-2225836:1:exon
so has part: feature:2227578-2227830:1:exon
so has part: feature:2230902-2231119:1:exon
so has part: feature:2233067-2233261:1:exon
so has part: feature:2234472-2235084:1:exon
so has part: feature:2240534-2240637:1:exon
so has part: feature:2240716-2240842:1:exon
so has part: feature:2246845-2247029:1:exon
so has part: feature:2252870-2253197:1:exon
so has part: feature:2255690-2255766:1:exon
so has part: feature:2260086-2260211:1:exon
so has part: feature:2263888-2264088:1:exon
so has part: feature:2266056-2266136:1:exon
so has part: feature:2266212-2266316:1:exon
so has part: feature:2266716-2266903:1:exon
so has part: feature:2267036-2268331:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2109911-2110536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2174958-2175162:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2213701-2213786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2223939-2224045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2224513-2224644:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2225706-2225836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2227578-2227830:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2230902-2231119:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2233067-2233261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2234472-2235084:1:exon

position:2234472:1
position: 2234472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2240534-2240637:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2240716-2240842:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2246845-2247029:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2252870-2253197:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2255690-2255766:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2260086-2260211:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2263888-2264088:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2266056-2266136:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2266212-2266316:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2266716-2266903:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2267036-2268331:1:exon

ATP10A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ATP10A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable phospholipid-transporting ATPase VA isoform X1
translation: MEQERRQPRSPGPGGAAAAAAAPGGQDAPRALQPAAAPGRRGPRTRWPRRAARGARAPSTWRQPAQDHQVHSAVLLAQKPVEQFHAGQRVLRFIALLNFVPAVNAFQPGLALAPVLFIRPSRPSRTYGRTTAATAPTTRSPPGCLVFSREEKQYVHRHWKEVRVGDFVRLRCNEIIPADILLLSSSDPDGLCHIETANLDGETNLKRRQVVRGFSELVSEFNPLTFTSVIECEKPNNDLTRFRGCIVHDSGKKAGLYKENLLLRGCTVRNTEAVVGIVIYAGHETKALLNNSGPRYKRSQLERQMNCDVLWCVLLLVCMSLFSAVGHGLWVQRYQEKKSLFDVPESDGTSLSPVTAAVYSFLTMIIVLQVLIPISLYVSIEIVKVCQVHFINQDIELYDEETDSQLQCRALNITEDLGQIQYIFSDKTGTLTENKMVFRRCTVSGVEYSHDANARRLARYQEADSEEEEVVPRGGSLPQRGSSGSHQSVRIVHRSQSTRSHRRTGSRAEAKLASMLSKHTAFSSPMEKDITPDPKLLEKVSECGRCLAFARHQEHPLAHLSPELSDIFDFFIALTICNTVVVTSPDQPRQKQVRVRFELKSPVKTIEDFLRRFTPSRLTSSCSSIGSVAATKPAHKAGSSFLSTLPNDSALLGLEERLGPRAGPRQQRLQQRRATGGGSHGSGSRAEPEPEPHSEPQPQPRPEGELRYEAESPDEAALVYAARAYNCKLVDRLHDQVSVELPHLGRLTFELLHTLGFDSIRKRMSVVIRHPLTDEINVYTKGADSVVMDLLLPCSADDARGRHQKKIRSKTQNYLNLYAVEGLRTLCIAKRVLSKEEYACWLQSHLEAESALDNREELLFQSALRLETNLHLLGATGIEDRLQDGVPETIAKLRQAGLQIWVLTGDKQETAINIAYACKLLDHNEEVITLNAESQEVCAALLDQCLHYVQSRSPHSAPEKTAGSLSVGFSPVYPPSTVTTAGPSLSLVIDGRSLAYALEKNLEDKFLFLAKQCRSVLCCRSTPLQKSMVVKLVRSKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPRFRYLERLLIVHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFYCGFSASAMIDQWYLIFFNLLFSSLPQLVTGVLDKDVPADVLLTKPQLYTSGQNREEYRPRTFWLNMADAAFQSLVCFFIPYLAYYDSDTDVFTWGTPITAIALFTFLLHLGIETKTWTWLNWTACGFSILLFFTVALIYNASCATCYPPSNPYWTMQTLMGDPVFYLTCLIAPVAALLPRLFCKALQGSLFPTQLQLARQLAKRSPEKLSAPKGTFAQGHVPGEPRTEPSEQRSLRASGSFSQDCGSQASWHAQQPACSPEASGEPSVVDMGMPLREDALLEGLSGQTPGASSPGQVVLEGCPRYSRRKPTSTSRAAPLSSIFSLPSFSSLSWISSLSLVSGLGSVLQFSRSGLQMDKRDGEFLASRPQPDQDLRGLSGQTTDCF
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: join(2110091..2110536,2174958..2175162,2213701..2213786,2223939..2224045,2224513..2224644,2225706..2225836,2227578..2227830,2230902..2231119,2233067..2233261,2234469..2235084,2240534..2240637,2240716..2240842,2246845..2247029,2252870..2253197,2255690..2255766,2260086..2260211,2263888..2264088,2266056..2266136,2266212..2266316,2266716..2266903,2267036..2267654)
location: region:2110091-2267654:1
so has part: feature:2110091-2110536:1:exon
so has part: feature:2174958-2175162:1:exon
so has part: feature:2213701-2213786:1:exon
so has part: feature:2223939-2224045:1:exon
so has part: feature:2224513-2224644:1:exon
so has part: feature:2225706-2225836:1:exon
so has part: feature:2227578-2227830:1:exon
so has part: feature:2230902-2231119:1:exon
so has part: feature:2233067-2233261:1:exon
so has part: feature:2234469-2235084:1:exon
so has part: feature:2240534-2240637:1:exon
so has part: feature:2240716-2240842:1:exon
so has part: feature:2246845-2247029:1:exon
so has part: feature:2252870-2253197:1:exon
so has part: feature:2255690-2255766:1:exon
so has part: feature:2260086-2260211:1:exon
so has part: feature:2263888-2264088:1:exon
so has part: feature:2266056-2266136:1:exon
so has part: feature:2266212-2266316:1:exon
so has part: feature:2266716-2266903:1:exon
so has part: feature:2267036-2267654:1:exon

XP_031296298.1
type: Protein
SIO_000068: ncbiprotein

position:2110091:1
position: 2110091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2267654:1
position: 2267654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2110091-2110536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2174958-2175162:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2213701-2213786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2223939-2224045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2224513-2224644:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2225706-2225836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2227578-2227830:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2230902-2231119:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2233067-2233261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2234469-2235084:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2240534-2240637:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2240716-2240842:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2246845-2247029:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2252870-2253197:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2255690-2255766:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2260086-2260211:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2263888-2264088:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2266056-2266136:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2266212-2266316:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2266716-2266903:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2267036-2267654:1:exon

ATP10A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ATP10A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable phospholipid-transporting ATPase VA isoform X3
translation: MEQERRQPRSPGPGGAAAAAAAPGGQDAPRALQPAAAPGRRGPRTRWPRRAARGARAPSTWRQPAQDHQVHSAVLLAQKPVEQFHAGQRVLRFIALLNFVPAVNAFQPGLALAPVLFIRPSRPSRTYGRTTAATAPTTRSPPGCLVFSREEKQYVHRHWKEVRVGDFVRLRCNEIIPADILLLSSSDPDGLCHIETANLDGETNLKRRQVVRGFSELVSEFNPLTFTSVIECEKPNNDLTRFRGCIVHDSGKKAGLYKENLLLRGCTVRNTEAVVGIVIYAGHETKALLNNSGPRYKRSQLERQMNCDVLWCVLLLVCMSLFSAVGHGLWVQRYQEKKSLFDVPESDGTSLSPVTAAVYSFLTMIIVLQVLIPISLYVSIEIVKVCQVHFINQDIELYDEETDSQLQCRALNITEDLGQIQYIFSDKTGTLTENKMVFRRCTVSGVEYSHDANARRLARYQEADSEEEEVVPRGGSLPQRGSSGSHQSVRIVHRSQSTRSHRRTGSRAEAKLASMLSKHTAFSSPMEKDITPDPKLLEKVSECGRCLAFARHQEHPLAHLSPELSDIFDFFIALTICNTVVVTSPDQPRQKQVRVRFELKSPVKTIEDFLRRFTPSRLTSSCSSIGSVAATKPAHKAGSSFLSTLPNDSALLGLEERLGPRAGPRQQRLQQRRATGGGSHGSGSRAEPEPEPHSEPQPQPRPEGELRYEAESPDEAALVYAARAYNCKLVDRLHDQVSVELPHLGRLTFELLHTLGFDSIRKRMSVVIRHPLTDEINVYTKGADSVVMDLLLPCSADDARGRHQKKIRSKTQNYLNLYAVEGLRTLCIAKRVLSKEEYACWLQSHLEAESALDNREELLFQSALRLETNLHLLGATGIEDRLQDGVPETIAKLRQAGLQIWVLTGDKQETAINIAYACKLLDHNEEVITLNAESQEVCAALLDQCLHYVQSRSPHSAPEKTAGSLSVGFSPVYPPSTVTTAGPSLSLVIDGRSLAYALEKNLEDKFLFLAKQCRSVLCCRSTPLQKSMVVKLVRSKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPRFRYLERLLIVHGHWCYSRLANMVLYFFYKNTLVTGVLDKDVPADVLLTKPQLYTSGQNREEYRPRTFWLNMADAAFQSLVCFFIPYLAYYDSDTDVFTWGTPITAIALFTFLLHLGIETKTWTWLNWTACGFSILLFFTVALIYNASCATCYPPSNPYWTMQTLMGDPVFYLTCLIAPVAALLPRLFCKALQGSLFPTQLQLARQLAKRSPEKLSAPKGTFAQGHVPGEPRTEPSEQRSLRASGSFSQDCGSQASWHAQQPACSPEASGEPSVVDMGMPLREDALLEGLSGQTPGASSPGQVVLEGCPRYSRRKPTSTSRAAPLSSIFSLPSFSSLSWISSLSLVSGLGSVLQFSRSGLQMDKRDGEFLASRPQPDQDLRGLSGQTTDCF
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: join(2110091..2110536,2174958..2175162,2213701..2213786,2223939..2224045,2224513..2224644,2225706..2225836,2227578..2227830,2230902..2231119,2233067..2233261,2234469..2235084,2240534..2240637,2240716..2240842,2246845..2247029,2252870..2253197,2255690..2255766,2260086..2260211,2264002..2264088,2266056..2266136,2266212..2266316,2266716..2266903,2267036..2267654)
location: region:2110091-2267654:1
so has part: feature:2110091-2110536:1:exon
so has part: feature:2174958-2175162:1:exon
so has part: feature:2213701-2213786:1:exon
so has part: feature:2223939-2224045:1:exon
so has part: feature:2224513-2224644:1:exon
so has part: feature:2225706-2225836:1:exon
so has part: feature:2227578-2227830:1:exon
so has part: feature:2230902-2231119:1:exon
so has part: feature:2233067-2233261:1:exon
so has part: feature:2234469-2235084:1:exon
so has part: feature:2240534-2240637:1:exon
so has part: feature:2240716-2240842:1:exon
so has part: feature:2246845-2247029:1:exon
so has part: feature:2252870-2253197:1:exon
so has part: feature:2255690-2255766:1:exon
so has part: feature:2260086-2260211:1:exon
so has part: feature:2264002-2264088:1:exon
so has part: feature:2266056-2266136:1:exon
so has part: feature:2266212-2266316:1:exon
so has part: feature:2266716-2266903:1:exon
so has part: feature:2267036-2267654:1:exon

XP_031296300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2110091-2110536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2174958-2175162:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2213701-2213786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2223939-2224045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2224513-2224644:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2225706-2225836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2227578-2227830:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2230902-2231119:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2233067-2233261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2234469-2235084:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2240534-2240637:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2240716-2240842:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2246845-2247029:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2252870-2253197:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2255690-2255766:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2260086-2260211:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2264002-2264088:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2266056-2266136:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2266212-2266316:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2266716-2266903:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2267036-2267654:1:exon

ATP10A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ATP10A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable phospholipid-transporting ATPase VA isoform X2
translation: MEQERRQPRSPGPGGAAAAAAAPGGQDAPRALQPAAAPGRRGPRTRWPRRAARGARAPSTWRQPAQDHQVHSAVLLAQKPVEQFHAGQRVLRFIALLNFVPAVNAFQPGLALAPVLFIRPSRPSRTYGRTTAATAPTTRSPPGCLVFSREEKQYVHRHWKEVRVGDFVRLRCNEIIPADILLLSSSDPDGLCHIETANLDGETNLKRRQVVRGFSELVSEFNPLTFTSVIECEKPNNDLTRFRGCIVHDSGKKAGLYKENLLLRGCTVRNTEAVVGIVIYAGHETKALLNNSGPRYKRSQLERQMNCDVLWCVLLLVCMSLFSAVGHGLWVQRYQEKKSLFDVPESDGTSLSPVTAAVYSFLTMIIVLQVLIPISLYVSIEIVKVCQVHFINQDIELYDEETDSQLQCRALNITEDLGQIQYIFSDKTGTLTENKMVFRRCTVSGVEYSHDANARRLARYQEADSEEEEVVPRGGSLPQRGSSGSHQSVRIVHRSQSTRSHRRTGSRAEAKLASMLSKHTAFSSPMEKDITPDPKLLEKVSECGRCLAFARHQEHPLAHLSPELSDIFDFFIALTICNTVVVTSPDQPRQKVRVRFELKSPVKTIEDFLRRFTPSRLTSSCSSIGSVAATKPAHKAGSSFLSTLPNDSALLGLEERLGPRAGPRQQRLQQRRATGGGSHGSGSRAEPEPEPHSEPQPQPRPEGELRYEAESPDEAALVYAARAYNCKLVDRLHDQVSVELPHLGRLTFELLHTLGFDSIRKRMSVVIRHPLTDEINVYTKGADSVVMDLLLPCSADDARGRHQKKIRSKTQNYLNLYAVEGLRTLCIAKRVLSKEEYACWLQSHLEAESALDNREELLFQSALRLETNLHLLGATGIEDRLQDGVPETIAKLRQAGLQIWVLTGDKQETAINIAYACKLLDHNEEVITLNAESQEVCAALLDQCLHYVQSRSPHSAPEKTAGSLSVGFSPVYPPSTVTTAGPSLSLVIDGRSLAYALEKNLEDKFLFLAKQCRSVLCCRSTPLQKSMVVKLVRSKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPRFRYLERLLIVHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFYCGFSASAMIDQWYLIFFNLLFSSLPQLVTGVLDKDVPADVLLTKPQLYTSGQNREEYRPRTFWLNMADAAFQSLVCFFIPYLAYYDSDTDVFTWGTPITAIALFTFLLHLGIETKTWTWLNWTACGFSILLFFTVALIYNASCATCYPPSNPYWTMQTLMGDPVFYLTCLIAPVAALLPRLFCKALQGSLFPTQLQLARQLAKRSPEKLSAPKGTFAQGHVPGEPRTEPSEQRSLRASGSFSQDCGSQASWHAQQPACSPEASGEPSVVDMGMPLREDALLEGLSGQTPGASSPGQVVLEGCPRYSRRKPTSTSRAAPLSSIFSLPSFSSLSWISSLSLVSGLGSVLQFSRSGLQMDKRDGEFLASRPQPDQDLRGLSGQTTDCF
SIO_010081: ATP10A
subclass of: SO_0000673
so part of: ATP10A
location: join(2110091..2110536,2174958..2175162,2213701..2213786,2223939..2224045,2224513..2224644,2225706..2225836,2227578..2227830,2230902..2231119,2233067..2233261,2234472..2235084,2240534..2240637,2240716..2240842,2246845..2247029,2252870..2253197,2255690..2255766,2260086..2260211,2263888..2264088,2266056..2266136,2266212..2266316,2266716..2266903,2267036..2267654)
location: region:2110091-2267654:1
so has part: feature:2110091-2110536:1:exon
so has part: feature:2174958-2175162:1:exon
so has part: feature:2213701-2213786:1:exon
so has part: feature:2223939-2224045:1:exon
so has part: feature:2224513-2224644:1:exon
so has part: feature:2225706-2225836:1:exon
so has part: feature:2227578-2227830:1:exon
so has part: feature:2230902-2231119:1:exon
so has part: feature:2233067-2233261:1:exon
so has part: feature:2234472-2235084:1:exon
so has part: feature:2240534-2240637:1:exon
so has part: feature:2240716-2240842:1:exon
so has part: feature:2246845-2247029:1:exon
so has part: feature:2252870-2253197:1:exon
so has part: feature:2255690-2255766:1:exon
so has part: feature:2260086-2260211:1:exon
so has part: feature:2263888-2264088:1:exon
so has part: feature:2266056-2266136:1:exon
so has part: feature:2266212-2266316:1:exon
so has part: feature:2266716-2266903:1:exon
so has part: feature:2267036-2267654:1:exon

XP_031296299.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2110091-2110536:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2174958-2175162:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2213701-2213786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2223939-2224045:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2224513-2224644:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2225706-2225836:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2227578-2227830:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2230902-2231119:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2233067-2233261:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2234472-2235084:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2240534-2240637:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2240716-2240842:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2246845-2247029:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2252870-2253197:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:2255690-2255766:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:2260086-2260211:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:2263888-2264088:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:2266056-2266136:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:2266212-2266316:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:2266716-2266903:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:2267036-2267654:1:exon

LOC116149431
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149431
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2301423..2301525)
location: region:2301423-2301525:-1
so has part: feature:2301423-2301525:-1:exon
subclass of: SO_0000623

116149431
type: Gene
SIO_000068: ncbigene

position:2301423:-1
position: 2301423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2301525:-1
position: 2301525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2301423-2301525:-1:exon

LOC116149431
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149431
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133044.1
SIO_010081: LOC116149431
subclass of: SO_0000673
so part of: LOC116149431
location: complement(2301423..2301525)
location: region:2301423-2301525:-1
so has part: feature:2301423-2301525:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2301423-2301525:-1:exon

UBE3A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: UBE3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2410002..2488647
location: region:2410002-2488647:1
so has part: feature:2410002-2488647:1:exon
subclass of: SO_0000010

105090788
type: Gene
SIO_000068: ncbigene

position:2410002:1
position: 2410002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2488647:1
position: 2488647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2410002-2488647:1:exon

UBE3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UBE3A
product: ubiquitin protein ligase E3A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031440441.1
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2410002..2410547,2435623..2435686,2438312..2438431,2441653..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2488647)
location: region:2410002-2488647:1
so has part: feature:2410002-2410547:1:exon
so has part: feature:2435623-2435686:1:exon
so has part: feature:2438312-2438431:1:exon
so has part: feature:2441653-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2488647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2410002-2410547:1:exon

position:2410547:1
position: 2410547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2435623-2435686:1:exon

position:2435623:1
position: 2435623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2435686:1
position: 2435686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2438312-2438431:1:exon

position:2438312:1
position: 2438312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2438431:1
position: 2438431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2441653-2441697:1:exon

position:2441653:1
position: 2441653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2441697:1
position: 2441697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2460951-2461255:1:exon

position:2460951:1
position: 2460951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2461255:1
position: 2461255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2467086-2468332:1:exon

position:2467086:1
position: 2467086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2468332:1
position: 2468332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2476764-2476908:1:exon

position:2476764:1
position: 2476764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2476908:1
position: 2476908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2479381-2479586:1:exon

position:2479381:1
position: 2479381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2479586:1
position: 2479586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2480238-2480402:1:exon

position:2480238:1
position: 2480238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2480402:1
position: 2480402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2481474-2481629:1:exon

position:2481474:1
position: 2481474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2481629:1
position: 2481629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2481728-2481801:1:exon

position:2481728:1
position: 2481728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2481801:1
position: 2481801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2485545-2485688:1:exon

position:2485545:1
position: 2485545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2485688:1
position: 2485688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:2486669-2488647:1:exon

position:2486669:1
position: 2486669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

UBE3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UBE3A
product: ubiquitin protein ligase E3A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_031440442.1
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2410415..2410547,2435623..2435686,2438312..2438431,2439985..2440151,2441653..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2488647)
location: region:2410415-2488647:1
so has part: feature:2410415-2410547:1:exon
so has part: feature:2435623-2435686:1:exon
so has part: feature:2438312-2438431:1:exon
so has part: feature:2439985-2440151:1:exon
so has part: feature:2441653-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2488647:1:exon

position:2410415:1
position: 2410415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2410415-2410547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2435623-2435686:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2438312-2438431:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2439985-2440151:1:exon

position:2439985:1
position: 2439985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2440151:1
position: 2440151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2441653-2441697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2486669-2488647:1:exon

UBE3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UBE3A
product: ubiquitin protein ligase E3A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031440443.1
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2410415..2410547,2435623..2435686,2438312..2438431,2440081..2440151,2441653..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2488647)
location: region:2410415-2488647:1
so has part: feature:2410415-2410547:1:exon
so has part: feature:2435623-2435686:1:exon
so has part: feature:2438312-2438431:1:exon
so has part: feature:2440081-2440151:1:exon
so has part: feature:2441653-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2488647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2410415-2410547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2435623-2435686:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2438312-2438431:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2440081-2440151:1:exon

position:2440081:1
position: 2440081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2441653-2441697:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:2486669-2488647:1:exon

UBE3A
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9838
gene: UBE3A
product: ubiquitin protein ligase E3A, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XR_004132889.1
SIO_010081: UBE3A
so part of: UBE3A
location: join(2410415..2410547,2435623..2435686,2438312..2438431,2441653..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2485545..2485688,2486669..2488647)
location: region:2410415-2488647:1
so has part: feature:2410415-2410547:1:exon
so has part: feature:2435623-2435686:1:exon
so has part: feature:2438312-2438431:1:exon
so has part: feature:2441653-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2488647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2410415-2410547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2435623-2435686:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2438312-2438431:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2441653-2441697:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2486669-2488647:1:exon

UBE3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UBE3A
product: ubiquitin protein ligase E3A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
transcript id: XM_031440444.1
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2410415..2410547,2435623..2435686,2441653..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2488647)
location: region:2410415-2488647:1
so has part: feature:2410415-2410547:1:exon
so has part: feature:2435623-2435686:1:exon
so has part: feature:2441653-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2488647:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2410415-2410547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2435623-2435686:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2441653-2441697:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:2486669-2488647:1:exon

UBE3A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: UBE3A
product: ubiquitin protein ligase E3A, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_031440445.1
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2410420..2410547,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2488647)
location: region:2410420-2488647:1
so has part: feature:2410420-2410547:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2488647:1:exon

position:2410420:1
position: 2410420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2410420-2410547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2486669-2488647:1:exon

UBE3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UBE3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A isoform X1
translation: MATACKRSSGESQSDDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGAPNNCSDIKMNKKEGQGARDDFKDVTYLTEETVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRISDSSQGDNNLQKLGPEDVSVDIEAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLVRLWSKYNADQIRRMMETFQQLITYKVISTDFNNRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2438412..2438431,2441653..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2486789)
location: region:2438412-2486789:1
so has part: feature:2438412-2438431:1:exon
so has part: feature:2441653-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2486789:1:exon

XP_031296301.1
type: Protein
SIO_000068: ncbiprotein

position:2438412:1
position: 2438412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2486789:1
position: 2486789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2438412-2438431:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2441653-2441697:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:2486669-2486789:1:exon

UBE3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UBE3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A isoform X2
translation: MKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGAPNNCSDIKMNKKEGQGARDDFKDVTYLTEETVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRISDSSQGDNNLQKLGPEDVSVDIEAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLVRLWSKYNADQIRRMMETFQQLITYKVISTDFNNRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2441696..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2486789)
location: region:2441696-2486789:1
so has part: feature:2441696-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2486789:1:exon

XP_031296302.1
type: Protein
SIO_000068: ncbiprotein

position:2441696:1
position: 2441696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2441696-2441697:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2486669-2486789:1:exon

UBE3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UBE3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A isoform X2
translation: MKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGAPNNCSDIKMNKKEGQGARDDFKDVTYLTEETVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRISDSSQGDNNLQKLGPEDVSVDIEAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLVRLWSKYNADQIRRMMETFQQLITYKVISTDFNNRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2441696..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2486789)
location: region:2441696-2486789:1
so has part: feature:2441696-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2486789:1:exon

XP_031296303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2441696-2441697:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2486669-2486789:1:exon

UBE3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UBE3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A isoform X2
translation: MKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGAPNNCSDIKMNKKEGQGARDDFKDVTYLTEETVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRISDSSQGDNNLQKLGPEDVSVDIEAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLVRLWSKYNADQIRRMMETFQQLITYKVISTDFNNRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2441696..2441697,2460951..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2486789)
location: region:2441696-2486789:1
so has part: feature:2441696-2441697:1:exon
so has part: feature:2460951-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2486789:1:exon

XP_031296304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2441696-2441697:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2460951-2461255:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:2486669-2486789:1:exon

UBE3A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: UBE3A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin-protein ligase E3A isoform X3
translation: MDNNAAAIKALELYKINAKLCDPHPSKKGASSAYLENSKGAPNNCSDIKMNKKEGQGARDDFKDVTYLTEETVYEILELCREREDYSPLIRVIGRVFSSAEALVQSFRKVKQHTKEELKSLQAKDEDKDEDEKEKAACSAAAMEEDSEASSSRISDSSQGDNNLQKLGPEDVSVDIEAIRRVYTRLLSNEKIETAFLNALVYLSPNVECDLTYHNVYSRDPNYLNLFIIVMENRNLHSPEYLEMALPLFCKAMSKLPLAAQGKLVRLWSKYNADQIRRMMETFQQLITYKVISTDFNNRNLVNDDDAIVAASKCLKMVYYANVVGGEVDTNHNEEDDEEPIPESSELTLQELLGEERRNKKGPRVDPLETELGVKTLDCRKPLIPFEEFINEPLNDVLEMDKDYTFFKVETENKFSFMTCPFILNAVTKNLGLYYDNRIRMYSERRITVLYSLVQGQQLNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEGEQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML
SIO_010081: UBE3A
subclass of: SO_0000673
so part of: UBE3A
location: join(2461066..2461255,2467086..2468332,2476764..2476908,2479381..2479586,2480238..2480402,2481474..2481629,2481728..2481801,2485545..2485688,2486669..2486789)
location: region:2461066-2486789:1
so has part: feature:2461066-2461255:1:exon
so has part: feature:2467086-2468332:1:exon
so has part: feature:2476764-2476908:1:exon
so has part: feature:2479381-2479586:1:exon
so has part: feature:2480238-2480402:1:exon
so has part: feature:2481474-2481629:1:exon
so has part: feature:2481728-2481801:1:exon
so has part: feature:2485545-2485688:1:exon
so has part: feature:2486669-2486789:1:exon

XP_031296305.1
type: Protein
SIO_000068: ncbiprotein

position:2461066:1
position: 2461066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2461066-2461255:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2467086-2468332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2476764-2476908:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2479381-2479586:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2480238-2480402:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2481474-2481629:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2481728-2481801:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2485545-2485688:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:2486669-2486789:1:exon

LOC116149305
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149305
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2508659..2564071)
location: region:2508659-2564071:-1
so has part: feature:2508659-2564071:-1:exon
subclass of: SO_0000011

116149305
type: Gene
SIO_000068: ncbigene

position:2508659:-1
position: 2508659
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2564071:-1
position: 2564071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2508659-2564071:-1:exon

LOC116149305
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149305
product: uncharacterized LOC116149305
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_004132891.1
SIO_010081: LOC116149305
subclass of: SO_0000673
so part of: LOC116149305
location: complement(join(2508659..2508764,2509913..2509989,2515022..2515140,2516585..2516846,2517129..2517866,2518248..2518376,2518612..2518919,2519760..2519919,2520298..2521328,2521931..2521975,2522352..2522491,2563322..2564071))
location: region:2508659-2564071:-1
so has part: feature:2563322-2564071:-1:exon
so has part: feature:2522352-2522491:-1:exon
so has part: feature:2521931-2521975:-1:exon
so has part: feature:2520298-2521328:-1:exon
so has part: feature:2519760-2519919:-1:exon
so has part: feature:2518612-2518919:-1:exon
so has part: feature:2518248-2518376:-1:exon
so has part: feature:2517129-2517866:-1:exon
so has part: feature:2516585-2516846:-1:exon
so has part: feature:2515022-2515140:-1:exon
so has part: feature:2509913-2509989:-1:exon
so has part: feature:2508659-2508764:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2563322-2564071:-1:exon

position:2563322:-1
position: 2563322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2522352-2522491:-1:exon

position:2522352:-1
position: 2522352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2522491:-1
position: 2522491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2521931-2521975:-1:exon

position:2521931:-1
position: 2521931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2521975:-1
position: 2521975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2520298-2521328:-1:exon

position:2520298:-1
position: 2520298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2521328:-1
position: 2521328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2519760-2519919:-1:exon

position:2519760:-1
position: 2519760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2519919:-1
position: 2519919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2518612-2518919:-1:exon

position:2518612:-1
position: 2518612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2518919:-1
position: 2518919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2518248-2518376:-1:exon

position:2518248:-1
position: 2518248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2518376:-1
position: 2518376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2517129-2517866:-1:exon

position:2517129:-1
position: 2517129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2517866:-1
position: 2517866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2516585-2516846:-1:exon

position:2516585:-1
position: 2516585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2516846:-1
position: 2516846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2515022-2515140:-1:exon

position:2515022:-1
position: 2515022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2515140:-1
position: 2515140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2509913-2509989:-1:exon

position:2509913:-1
position: 2509913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2509989:-1
position: 2509989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:2508659-2508764:-1:exon

position:2508764:-1
position: 2508764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149458
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149458
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2509216..2509282)
location: region:2509216-2509282:-1
so has part: feature:2509216-2509282:-1:exon
subclass of: SO_0000578

116149458
type: Gene
SIO_000068: ncbigene

position:2509216:-1
position: 2509216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2509282:-1
position: 2509282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2509216-2509282:-1:exon

LOC116149458
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149458
product: small nucleolar RNA SNORD109A
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01278
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133070.1
SIO_010081: LOC116149458
subclass of: SO_0000673
so part of: LOC116149458
location: complement(2509216..2509282)
location: region:2509216-2509282:-1
so has part: feature:2509216-2509282:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2509216-2509282:-1:exon

LOC116149436
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149436
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2516047..2516125)
location: region:2516047-2516125:-1
so has part: feature:2516047-2516125:-1:exon
subclass of: SO_0000578

116149436
type: Gene
SIO_000068: ncbigene

position:2516047:-1
position: 2516047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2516125:-1
position: 2516125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2516047-2516125:-1:exon

LOC116149436
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149436
product: small nucleolar RNA SNORD115
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00105
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133048.1
SIO_010081: LOC116149436
subclass of: SO_0000673
so part of: LOC116149436
location: complement(2516047..2516125)
location: region:2516047-2516125:-1
so has part: feature:2516047-2516125:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2516047-2516125:-1:exon

LOC116149434
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149434
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2518117..2518197)
location: region:2518117-2518197:-1
so has part: feature:2518117-2518197:-1:exon
subclass of: SO_0000578

116149434
type: Gene
SIO_000068: ncbigene

position:2518117:-1
position: 2518117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2518197:-1
position: 2518197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2518117-2518197:-1:exon

LOC116149434
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149434
product: small nucleolar RNA SNORD115
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00105
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133046.1
SIO_010081: LOC116149434
subclass of: SO_0000673
so part of: LOC116149434
location: complement(2518117..2518197)
location: region:2518117-2518197:-1
so has part: feature:2518117-2518197:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2518117-2518197:-1:exon

LOC116149437
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149437
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2520169..2520248)
location: region:2520169-2520248:-1
so has part: feature:2520169-2520248:-1:exon
subclass of: SO_0000578

116149437
type: Gene
SIO_000068: ncbigene

position:2520169:-1
position: 2520169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2520248:-1
position: 2520248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2520169-2520248:-1:exon

LOC116149437
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149437
product: small nucleolar RNA SNORD115
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00105
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133049.1
SIO_010081: LOC116149437
subclass of: SO_0000673
so part of: LOC116149437
location: complement(2520169..2520248)
location: region:2520169-2520248:-1
so has part: feature:2520169-2520248:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2520169-2520248:-1:exon

LOC116149435
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149435
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2522223..2522302)
location: region:2522223-2522302:-1
so has part: feature:2522223-2522302:-1:exon
subclass of: SO_0000578

116149435
type: Gene
SIO_000068: ncbigene

position:2522223:-1
position: 2522223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2522302:-1
position: 2522302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2522223-2522302:-1:exon

LOC116149435
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149435
product: small nucleolar RNA SNORD115
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00105
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133047.1
SIO_010081: LOC116149435
subclass of: SO_0000673
so part of: LOC116149435
location: complement(2522223..2522302)
location: region:2522223-2522302:-1
so has part: feature:2522223-2522302:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2522223-2522302:-1:exon

LOC116149440
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149440
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2524269..2524348)
location: region:2524269-2524348:-1
so has part: feature:2524269-2524348:-1:exon
subclass of: SO_0000578

116149440
type: Gene
SIO_000068: ncbigene

position:2524269:-1
position: 2524269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2524348:-1
position: 2524348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2524269-2524348:-1:exon

LOC116149440
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149440
product: small nucleolar RNA SNORD115
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00105
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133052.1
SIO_010081: LOC116149440
subclass of: SO_0000673
so part of: LOC116149440
location: complement(2524269..2524348)
location: region:2524269-2524348:-1
so has part: feature:2524269-2524348:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2524269-2524348:-1:exon

LOC116149439
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149439
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2525988..2526071)
location: region:2525988-2526071:-1
so has part: feature:2525988-2526071:-1:exon
subclass of: SO_0000578

116149439
type: Gene
SIO_000068: ncbigene

position:2525988:-1
position: 2525988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2526071:-1
position: 2526071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2525988-2526071:-1:exon

LOC116149439
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149439
product: small nucleolar RNA SNORD115
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00105
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133051.1
SIO_010081: LOC116149439
subclass of: SO_0000673
so part of: LOC116149439
location: complement(2525988..2526071)
location: region:2525988-2526071:-1
so has part: feature:2525988-2526071:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2525988-2526071:-1:exon

LOC105090787
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105090787
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2564994..2582810)
location: region:2564994-2582810:-1
so has part: feature:2564994-2582810:-1:exon
subclass of: SO_0000011

105090787
type: Gene
SIO_000068: ncbigene

position:2564994:-1
position: 2564994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2582810:-1
position: 2582810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2564994-2582810:-1:exon

LOC105090787
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC105090787
product: uncharacterized LOC105090787
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004132890.1
SIO_010081: LOC105090787
subclass of: SO_0000673
so part of: LOC105090787
location: complement(join(2564994..2565807,2566496..2566607,2567347..2567487,2571100..2571230,2571555..2571684,2572721..2572957,2573576..2575314,2575583..2575695,2576875..2577004,2577245..2579917,2582472..2582810))
location: region:2564994-2582810:-1
so has part: feature:2582472-2582810:-1:exon
so has part: feature:2577245-2579917:-1:exon
so has part: feature:2576875-2577004:-1:exon
so has part: feature:2575583-2575695:-1:exon
so has part: feature:2573576-2575314:-1:exon
so has part: feature:2572721-2572957:-1:exon
so has part: feature:2571555-2571684:-1:exon
so has part: feature:2571100-2571230:-1:exon
so has part: feature:2567347-2567487:-1:exon
so has part: feature:2566496-2566607:-1:exon
so has part: feature:2564994-2565807:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2582472-2582810:-1:exon

position:2582472:-1
position: 2582472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2577245-2579917:-1:exon

position:2577245:-1
position: 2577245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2579917:-1
position: 2579917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2576875-2577004:-1:exon

position:2576875:-1
position: 2576875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2577004:-1
position: 2577004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2575583-2575695:-1:exon

position:2575583:-1
position: 2575583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2575695:-1
position: 2575695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2573576-2575314:-1:exon

position:2573576:-1
position: 2573576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2575314:-1
position: 2575314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2572721-2572957:-1:exon

position:2572721:-1
position: 2572721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2572957:-1
position: 2572957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2571555-2571684:-1:exon

position:2571555:-1
position: 2571555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2571684:-1
position: 2571684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:2571100-2571230:-1:exon

position:2571100:-1
position: 2571100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2571230:-1
position: 2571230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:2567347-2567487:-1:exon

position:2567347:-1
position: 2567347
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2567487:-1
position: 2567487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:2566496-2566607:-1:exon

position:2566496:-1
position: 2566496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2566607:-1
position: 2566607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:2564994-2565807:-1:exon

position:2565807:-1
position: 2565807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149443
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149443
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2576574..2576655)
location: region:2576574-2576655:-1
so has part: feature:2576574-2576655:-1:exon
subclass of: SO_0000578

116149443
type: Gene
SIO_000068: ncbigene

position:2576574:-1
position: 2576574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2576655:-1
position: 2576655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2576574-2576655:-1:exon

LOC116149443
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149443
product: small nucleolar RNA SNORD116
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00108
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133055.1
SIO_010081: LOC116149443
subclass of: SO_0000673
so part of: LOC116149443
location: complement(2576574..2576655)
location: region:2576574-2576655:-1
so has part: feature:2576574-2576655:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2576574-2576655:-1:exon

LOC116149442
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149442
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2579476..2579560)
location: region:2579476-2579560:-1
so has part: feature:2579476-2579560:-1:exon
subclass of: SO_0000578

116149442
type: Gene
SIO_000068: ncbigene

position:2579476:-1
position: 2579476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2579560:-1
position: 2579560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2579476-2579560:-1:exon

LOC116149442
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149442
product: small nucleolar RNA SNORD116
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00108
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133054.1
SIO_010081: LOC116149442
subclass of: SO_0000673
so part of: LOC116149442
location: complement(2579476..2579560)
location: region:2579476-2579560:-1
so has part: feature:2579476-2579560:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2579476-2579560:-1:exon

LOC116149441
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149441
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2582162..2582255)
location: region:2582162-2582255:-1
so has part: feature:2582162-2582255:-1:exon
subclass of: SO_0000578

116149441
type: Gene
SIO_000068: ncbigene

position:2582162:-1
position: 2582162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2582255:-1
position: 2582255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2582162-2582255:-1:exon

LOC116149441
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149441
product: small nucleolar RNA SNORD116
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00108
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133053.1
SIO_010081: LOC116149441
subclass of: SO_0000673
so part of: LOC116149441
location: complement(2582162..2582255)
location: region:2582162-2582255:-1
so has part: feature:2582162-2582255:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2582162-2582255:-1:exon

LOC116149418
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2585364..2590112)
location: region:2585364-2590112:-1
so has part: feature:2585364-2590112:-1:exon
subclass of: SO_0000011

116149418
type: Gene
SIO_000068: ncbigene

position:2585364:-1
position: 2585364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2590112:-1
position: 2590112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2585364-2590112:-1:exon

LOC116149418
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149418
product: uncharacterized LOC116149418
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_004133033.1
SIO_010081: LOC116149418
subclass of: SO_0000673
so part of: LOC116149418
location: complement(join(2585364..2585576,2586931..2586971,2589002..2590112))
location: region:2585364-2590112:-1
so has part: feature:2589002-2590112:-1:exon
so has part: feature:2586931-2586971:-1:exon
so has part: feature:2585364-2585576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2589002-2590112:-1:exon

position:2589002:-1
position: 2589002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2586931-2586971:-1:exon

position:2586931:-1
position: 2586931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2586971:-1
position: 2586971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2585364-2585576:-1:exon

position:2585576:-1
position: 2585576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149457
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149457
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2586029..2586095)
location: region:2586029-2586095:-1
so has part: feature:2586029-2586095:-1:exon
subclass of: SO_0000578

116149457
type: Gene
SIO_000068: ncbigene

position:2586029:-1
position: 2586029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2586095:-1
position: 2586095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2586029-2586095:-1:exon

LOC116149457
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149457
product: small nucleolar RNA SNORD109A
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01278
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133069.1
SIO_010081: LOC116149457
subclass of: SO_0000673
so part of: LOC116149457
location: complement(2586029..2586095)
location: region:2586029-2586095:-1
so has part: feature:2586029-2586095:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2586029-2586095:-1:exon

LOC116149454
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149454
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2627057..2627126)
location: region:2627057-2627126:-1
so has part: feature:2627057-2627126:-1:exon
subclass of: SO_0000578

116149454
type: Gene
SIO_000068: ncbigene

position:2627057:-1
position: 2627057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2627126:-1
position: 2627126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2627057-2627126:-1:exon

LOC116149454
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149454
product: small nucleolar RNA SNORD108
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01158
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133066.1
SIO_010081: LOC116149454
subclass of: SO_0000673
so part of: LOC116149454
location: complement(2627057..2627126)
location: region:2627057-2627126:-1
so has part: feature:2627057-2627126:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2627057-2627126:-1:exon

LOC116149455
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149455
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(2628987..2629058)
location: region:2628987-2629058:-1
so has part: feature:2628987-2629058:-1:exon
subclass of: SO_0000578

116149455
type: Gene
SIO_000068: ncbigene

position:2628987:-1
position: 2628987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2629058:-1
position: 2629058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2628987-2629058:-1:exon

LOC116149455
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149455
product: small nucleolar RNA SNORD107
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01164
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133067.1
SIO_010081: LOC116149455
subclass of: SO_0000673
so part of: LOC116149455
location: complement(2628987..2629058)
location: region:2628987-2629058:-1
so has part: feature:2628987-2629058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2628987-2629058:-1:exon

SNRPN
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SNRPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2632526..2643177)
location: region:2632526-2643177:-1
so has part: feature:2632526-2643177:-1:exon
subclass of: SO_0000010

105092510
type: Gene
SIO_000068: ncbigene

position:2632526:-1
position: 2632526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2643177:-1
position: 2643177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2632526-2643177:-1:exon

SNRPN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNRPN
product: small nuclear ribonucleoprotein polypeptide N, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_010984208.2
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632526..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2643039..2643177))
location: region:2632526-2643177:-1
so has part: feature:2643039-2643177:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632526-2632698:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2643039-2643177:-1:exon

position:2643039:-1
position: 2643039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2636658-2636809:-1:exon

position:2636658:-1
position: 2636658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2636809:-1
position: 2636809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2634511-2634622:-1:exon

position:2634511:-1
position: 2634511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2634622:-1
position: 2634622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2633898-2634050:-1:exon

position:2633898:-1
position: 2633898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2634050:-1
position: 2634050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2633306-2633444:-1:exon

position:2633306:-1
position: 2633306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2633444:-1
position: 2633444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2632807-2632932:-1:exon

position:2632807:-1
position: 2632807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2632932:-1
position: 2632932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:2632526-2632698:-1:exon

position:2632698:-1
position: 2632698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SNRPN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNRPN
product: small nuclear ribonucleoprotein polypeptide N, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_010984207.2
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632526..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2637987..2638045,2643039..2643121))
location: region:2632526-2643121:-1
so has part: feature:2643039-2643121:-1:exon
so has part: feature:2637987-2638045:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632526-2632698:-1:exon

position:2643121:-1
position: 2643121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2643039-2643121:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2637987-2638045:-1:exon

position:2637987:-1
position: 2637987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2638045:-1
position: 2638045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2636658-2636809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2632526-2632698:-1:exon

SNRPN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNRPN
product: small nuclear ribonucleoprotein polypeptide N, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031440447.1
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632526..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2637987..2638056,2643039..2643096))
location: region:2632526-2643096:-1
so has part: feature:2643039-2643096:-1:exon
so has part: feature:2637987-2638056:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632526-2632698:-1:exon

position:2643096:-1
position: 2643096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2643039-2643096:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2637987-2638056:-1:exon

position:2638056:-1
position: 2638056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2636658-2636809:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:2632526-2632698:-1:exon

SNRPN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNRPN
product: small nuclear ribonucleoprotein polypeptide N, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031440446.1
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632526..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2637987..2638133))
location: region:2632526-2638133:-1
so has part: feature:2637987-2638133:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632526-2632698:-1:exon

position:2638133:-1
position: 2638133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2637987-2638133:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2636658-2636809:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2632526-2632698:-1:exon

SNRPN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNRPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein-associated protein N isoform X1
translation: MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPMGPPIGLPPSRGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632661..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2637987..2637989))
location: region:2632661-2637989:-1
so has part: feature:2637987-2637989:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632661-2632698:-1:exon

XP_031296306.1
type: Protein
SIO_000068: ncbiprotein

position:2632661:-1
position: 2632661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2637989:-1
position: 2637989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2637987-2637989:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2636658-2636809:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2632661-2632698:-1:exon

SNRPN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNRPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein-associated protein N isoform X1
translation: MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPMGPPIGLPPSRGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632661..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2637987..2637989))
location: region:2632661-2637989:-1
so has part: feature:2637987-2637989:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632661-2632698:-1:exon

XP_031296307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2637987-2637989:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2636658-2636809:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2632661-2632698:-1:exon

SNRPN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNRPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein-associated protein N isoform X1
translation: MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPMGPPIGLPPSRGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632661..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636809,2637987..2637989))
location: region:2632661-2637989:-1
so has part: feature:2637987-2637989:-1:exon
so has part: feature:2636658-2636809:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632661-2632698:-1:exon

XP_010982509.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2637987-2637989:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2636658-2636809:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2632661-2632698:-1:exon

SNRPN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNRPN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: small nuclear ribonucleoprotein-associated protein N isoform X2
translation: MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPMGPPIGLPPSRGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP
SIO_010081: SNRPN
subclass of: SO_0000673
so part of: SNRPN
location: complement(join(2632661..2632698,2632807..2632932,2633306..2633444,2633898..2634050,2634511..2634622,2636658..2636788))
location: region:2632661-2636788:-1
so has part: feature:2636658-2636788:-1:exon
so has part: feature:2634511-2634622:-1:exon
so has part: feature:2633898-2634050:-1:exon
so has part: feature:2633306-2633444:-1:exon
so has part: feature:2632807-2632932:-1:exon
so has part: feature:2632661-2632698:-1:exon

XP_010982510.1
type: Protein
SIO_000068: ncbiprotein

position:2636788:-1
position: 2636788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2636658-2636788:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2634511-2634622:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2633898-2634050:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2633306-2633444:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2632807-2632932:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:2632661-2632698:-1:exon

SNURF
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SNURF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2643039..2653987)
location: region:2643039-2653987:-1
so has part: feature:2643039-2653987:-1:exon
subclass of: SO_0000010

105092508
type: Gene
SIO_000068: ncbigene

position:2653987:-1
position: 2653987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2643039-2653987:-1:exon

SNURF
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNURF
product: SNRPN upstream reading frame
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
transcript id: XM_031440448.1
SIO_010081: SNURF
subclass of: SO_0000673
so part of: SNURF
location: complement(join(2643039..2643205,2647833..2647928,2653834..2653987))
location: region:2643039-2653987:-1
so has part: feature:2653834-2653987:-1:exon
so has part: feature:2647833-2647928:-1:exon
so has part: feature:2643039-2643205:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2653834-2653987:-1:exon

position:2653834:-1
position: 2653834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2647833-2647928:-1:exon

position:2647833:-1
position: 2647833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2647928:-1
position: 2647928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2643039-2643205:-1:exon

position:2643205:-1
position: 2643205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SNURF
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNURF
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SNRPN upstream reading frame protein
translation: MERARDRLHLRRTTEQHVPEVEVQVKRRRTASLSNQECHLYPRRSQQQQPQQVPVVDFQAELRQAFLAETPRGG
SIO_010081: SNURF
subclass of: SO_0000673
so part of: SNURF
location: complement(join(2643091..2643205,2647833..2647928,2653834..2653847))
location: region:2643091-2653847:-1
so has part: feature:2653834-2653847:-1:exon
so has part: feature:2647833-2647928:-1:exon
so has part: feature:2643091-2643205:-1:exon

XP_031296308.1
type: Protein
SIO_000068: ncbiprotein

position:2643091:-1
position: 2643091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2653847:-1
position: 2653847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2653834-2653847:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2647833-2647928:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2643091-2643205:-1:exon

LOC116149372
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149372
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2654016..2663223
location: region:2654016-2663223:1
so has part: feature:2654016-2663223:1:exon

116149372
type: Gene
SIO_000068: ncbigene

position:2654016:1
position: 2654016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2663223:1
position: 2663223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2654016-2663223:1:exon

LOC116149372
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149372
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149372
subclass of: SO_0000673
so part of: LOC116149372
location: 2654016..2654100
location: region:2654016-2654100:1
so has part: feature:2654016-2654100:1:exon

position:2654100:1
position: 2654100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2654016-2654100:1:exon

LOC116149372
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149372
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149372
subclass of: SO_0000673
so part of: LOC116149372
location: 2660529..2661126
location: region:2660529-2661126:1
so has part: feature:2660529-2661126:1:exon

position:2660529:1
position: 2660529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2661126:1
position: 2661126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2660529-2661126:1:exon

LOC116149372
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149372
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149372
subclass of: SO_0000673
so part of: LOC116149372
location: 2663207..2663223
location: region:2663207-2663223:1
so has part: feature:2663207-2663223:1:exon

position:2663207:1
position: 2663207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2663207-2663223:1:exon

LOC105092524
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092524
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2663305..2670427
location: region:2663305-2670427:1
so has part: feature:2663305-2670427:1:exon

105092524
type: Gene
SIO_000068: ncbigene

position:2663305:1
position: 2663305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2670427:1
position: 2670427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2663305-2670427:1:exon

LOC105092524
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092524
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092524
subclass of: SO_0000673
so part of: LOC105092524
location: 2663305..2663349
location: region:2663305-2663349:1
so has part: feature:2663305-2663349:1:exon

position:2663349:1
position: 2663349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2663305-2663349:1:exon

LOC105092524
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092524
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092524
subclass of: SO_0000673
so part of: LOC105092524
location: 2665868..2666236
location: region:2665868-2666236:1
so has part: feature:2665868-2666236:1:exon

position:2665868:1
position: 2665868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2666236:1
position: 2666236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2665868-2666236:1:exon

LOC105092524
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092524
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092524
subclass of: SO_0000673
so part of: LOC105092524
location: 2666334..2666462
location: region:2666334-2666462:1
so has part: feature:2666334-2666462:1:exon

position:2666334:1
position: 2666334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2666462:1
position: 2666462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2666334-2666462:1:exon

LOC105092524
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092524
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092524
subclass of: SO_0000673
so part of: LOC105092524
location: 2668185..2668422
location: region:2668185-2668422:1
so has part: feature:2668185-2668422:1:exon

position:2668185:1
position: 2668185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2668422:1
position: 2668422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2668185-2668422:1:exon

TRNAA-CGC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAA-CGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 2668419..2668491
location: region:2668419-2668491:1
so has part: feature:2668419-2668491:1:exon
subclass of: SO_0000663

116149472
type: Gene
SIO_000068: ncbigene

position:2668419:1
position: 2668419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2668491:1
position: 2668491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2668419-2668491:1:exon

TRNAA-CGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAA-CGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:2668452..2668454,aa:Ala,seq:cgc)
SIO_010081: TRNAA-CGC
subclass of: SO_0000673
so part of: TRNAA-CGC
location: 2668419..2668491
location: region:2668419-2668491:1
so has part: feature:2668419-2668491:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2668419-2668491:1:exon

LOC105092524
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092524
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 35% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092524
subclass of: SO_0000673
so part of: LOC105092524
location: 2670324..2670427
location: region:2670324-2670427:1
so has part: feature:2670324-2670427:1:exon

position:2670324:1
position: 2670324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2670324-2670427:1:exon

LOC105092511
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092511
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2731886..2733232)
location: region:2731886-2733232:-1
so has part: feature:2731886-2733232:-1:exon

105092511
type: Gene
SIO_000068: ncbigene

position:2731886:-1
position: 2731886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2733232:-1
position: 2733232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2731886-2733232:-1:exon

LOC105092511
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092511
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 547 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092511
subclass of: SO_0000673
so part of: LOC105092511
location: complement(2731886..2733232)
location: region:2731886-2733232:-1
so has part: feature:2731886-2733232:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2731886-2733232:-1:exon

LOC105092525
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092525
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2763500..2764908)
location: region:2763500-2764908:-1
so has part: feature:2763500-2764908:-1:exon

105092525
type: Gene
SIO_000068: ncbigene

position:2763500:-1
position: 2763500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2764908:-1
position: 2764908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2763500-2764908:-1:exon

LOC105092525
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092525
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 429 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092525
subclass of: SO_0000673
so part of: LOC105092525
location: complement(2763500..2764908)
location: region:2763500-2764908:-1
so has part: feature:2763500-2764908:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2763500-2764908:-1:exon

LOC105092512
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092512
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(2810052..2811474)
location: region:2810052-2811474:-1
so has part: feature:2810052-2811474:-1:exon

105092512
type: Gene
SIO_000068: ncbigene

position:2810052:-1
position: 2810052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2811474:-1
position: 2811474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2810052-2811474:-1:exon

LOC105092512
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092512
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 589 Proteins, and 38% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092512
subclass of: SO_0000673
so part of: LOC105092512
location: complement(2810052..2811474)
location: region:2810052-2811474:-1
so has part: feature:2810052-2811474:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2810052-2811474:-1:exon

LOC116149307
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149307
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2840540..2848211
location: region:2840540-2848211:1
so has part: feature:2840540-2848211:1:exon

116149307
type: Gene
SIO_000068: ncbigene

position:2840540:1
position: 2840540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2848211:1
position: 2848211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2840540-2848211:1:exon

LOC116149307
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149307
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 220 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149307
subclass of: SO_0000673
so part of: LOC116149307
location: 2840540..2840571
location: region:2840540-2840571:1
so has part: feature:2840540-2840571:1:exon

position:2840571:1
position: 2840571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2840540-2840571:1:exon

LOC116149307
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149307
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 220 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149307
subclass of: SO_0000673
so part of: LOC116149307
location: 2846454..2848211
location: region:2846454-2848211:1
so has part: feature:2846454-2848211:1:exon

position:2846454:1
position: 2846454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2846454-2848211:1:exon

LOC105092514
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092514
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2980868..2982296
location: region:2980868-2982296:1
so has part: feature:2980868-2982296:1:exon

105092514
type: Gene
SIO_000068: ncbigene

position:2980868:1
position: 2980868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2982296:1
position: 2982296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2980868-2982296:1:exon

LOC105092514
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092514
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 448 Proteins, and 23% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092514
subclass of: SO_0000673
so part of: LOC105092514
location: 2980868..2982296
location: region:2980868-2982296:1
so has part: feature:2980868-2982296:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2980868-2982296:1:exon

LOC105092515
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092515
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3042171..3044423
location: region:3042171-3044423:1
so has part: feature:3042171-3044423:1:exon

105092515
type: Gene
SIO_000068: ncbigene

position:3042171:1
position: 3042171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3044423:1
position: 3044423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3042171-3044423:1:exon

LOC105092515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 429 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092515
subclass of: SO_0000673
so part of: LOC105092515
location: 3042171..3042235
location: region:3042171-3042235:1
so has part: feature:3042171-3042235:1:exon

position:3042235:1
position: 3042235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3042171-3042235:1:exon

LOC105092515
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092515
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 429 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092515
subclass of: SO_0000673
so part of: LOC105092515
location: 3042565..3044423
location: region:3042565-3044423:1
so has part: feature:3042565-3044423:1:exon

position:3042565:1
position: 3042565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3042565-3044423:1:exon

LOC105092516
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092516
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3113464..3114897
location: region:3113464-3114897:1
so has part: feature:3113464-3114897:1:exon

105092516
type: Gene
SIO_000068: ncbigene

position:3113464:1
position: 3113464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3114897:1
position: 3114897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3113464-3114897:1:exon

LOC105092516
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092516
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 403 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092516
subclass of: SO_0000673
so part of: LOC105092516
location: 3113464..3114897
location: region:3113464-3114897:1
so has part: feature:3113464-3114897:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3113464-3114897:1:exon

LOC116149419
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149419
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3148365..3167530)
location: region:3148365-3167530:-1
so has part: feature:3148365-3167530:-1:exon
subclass of: SO_0000011

116149419
type: Gene
SIO_000068: ncbigene

position:3148365:-1
position: 3148365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3167530:-1
position: 3167530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3148365-3167530:-1:exon

LOC116149419
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149419
product: uncharacterized LOC116149419
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004133034.1
SIO_010081: LOC116149419
subclass of: SO_0000673
so part of: LOC116149419
location: complement(join(3148365..3148432,3151784..3151854,3157679..3157787,3164118..3164247,3166266..3166398,3167397..3167530))
location: region:3148365-3167530:-1
so has part: feature:3167397-3167530:-1:exon
so has part: feature:3166266-3166398:-1:exon
so has part: feature:3164118-3164247:-1:exon
so has part: feature:3157679-3157787:-1:exon
so has part: feature:3151784-3151854:-1:exon
so has part: feature:3148365-3148432:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3167397-3167530:-1:exon

position:3167397:-1
position: 3167397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3166266-3166398:-1:exon

position:3166266:-1
position: 3166266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3166398:-1
position: 3166398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3164118-3164247:-1:exon

position:3164118:-1
position: 3164118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3164247:-1
position: 3164247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3157679-3157787:-1:exon

position:3157679:-1
position: 3157679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3157787:-1
position: 3157787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3151784-3151854:-1:exon

position:3151784:-1
position: 3151784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3151854:-1
position: 3151854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3148365-3148432:-1:exon

position:3148432:-1
position: 3148432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC105092518
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105092518
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3252781..3253329
location: region:3252781-3253329:1
so has part: feature:3252781-3253329:1:exon

105092518
type: Gene
SIO_000068: ncbigene

position:3252781:1
position: 3252781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3253329:1
position: 3253329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3252781-3253329:1:exon

LOC105092518
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105092518
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105092518
subclass of: SO_0000673
so part of: LOC105092518
location: 3252781..3253329
location: region:3252781-3253329:1
so has part: feature:3252781-3253329:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3252781-3253329:1:exon

NDN
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: NDN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3318458..3320140
location: region:3318458-3320140:1
so has part: feature:3318458-3320140:1:exon
subclass of: SO_0000010

105092521
type: Gene
SIO_000068: ncbigene

position:3318458:1
position: 3318458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3320140:1
position: 3320140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3318458-3320140:1:exon

NDN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NDN
product: necdin, MAGE family member
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010984210.2
SIO_010081: NDN
subclass of: SO_0000673
so part of: NDN
location: 3318458..3320140
location: region:3318458-3320140:1
so has part: feature:3318458-3320140:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3318458-3320140:1:exon

NDN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NDN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: necdin
translation: MSEQSKDVCDPSFAAEASNCEVHSIPGVPGGPSPPASQAATLAGPESPPVGPPDAPLASPAPQAPSEEGDLKALQQAAEEGRAHQAPNAAQPVPAPPAPAQLVQKAHELMWYVLVKDQKRMIIWFPDMVKDVIGSYKKWCRSILRRTSLILARVFGLHLRLTSLHTMEFSLVKALEPEELDRVALSNRMPMTGLLLMILSLIYVKGRGARESAVWNVLRILGLRPWKKHSTFGDVRKLITEEFVQQNYLKYQRVPHVEPPEYEFFWGSRASREITKMQIMEFLARVFKKDPQAWPSRYREALEEARALREASPTAYCPRNSVSED
SIO_010081: NDN
subclass of: SO_0000673
so part of: NDN
location: 3318587..3319564
location: region:3318587-3319564:1
so has part: feature:3318587-3319564:1:exon

XP_010982512.1
type: Protein
SIO_000068: ncbiprotein

position:3318587:1
position: 3318587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3319564:1
position: 3319564
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3318587-3319564:1:exon

MAGEL2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MAGEL2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3353386..3357508
location: region:3353386-3357508:1
so has part: feature:3353386-3357508:1:exon
subclass of: SO_0000010

105092522
type: Gene
SIO_000068: ncbigene

position:3353386:1
position: 3353386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3357508:1
position: 3357508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3353386-3357508:1:exon

MAGEL2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MAGEL2
product: MAGE family member L2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440450.1
SIO_010081: MAGEL2
subclass of: SO_0000673
so part of: MAGEL2
location: 3353386..3357508
location: region:3353386-3357508:1
so has part: feature:3353386-3357508:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3353386-3357508:1:exon

MAGEL2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MAGEL2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: MAGE-like protein 2
translation: MSQLSKNLGDSSPPAEAPKPPVYSRPTVLMRAPPASSRAPPVPWDPPPIDLQASLAAWQAPQPAWEAPQGQPPAPVAPMAQPPSLGAPMVQAPPLGGPMGKPPTPGVLMVHPPPPGAPMAQPPTPGVLMVHPSAPGAPMAHPPPPGTPMAHPPPPGTPMAHPPPPGTPMVHPPPPATPMAHPPPPGTPMAHPPPPGTPMAHPPPPGTPMAHPPPPGTPMAQPPAPGVLMVQPPAPGVLMVQPPAPGAPMAQPPPPAALMAQPPPPVAPMAKPPAPGVLMVHSAGSRAQIAQPPATGAPMVQPPAPPAQPMASWAPQAQPLILQIQSQVIRAPPPVPQGPQAPPAPLATPPGWQATSPGWQAPPQGWQATSLGWQATQVTWQAPTIAWPAPPPVRQGPPPIRPGPPPIRPGPPPIRQAPPPIRQAPPLIRQAPPPIRPAPQVLATPPPLWQALPPPPPLRQAPQARLPTPQLRAAPPVRAPPPIRVAPPAPQVPTAPPAGPQAPPVAMPAPLPAPLPAPQAAHCPPIIWQAPKGQAPVPHEMPTSMEFQDVQQGQALTWQAPKAPGQFWQPLPTQEAQRQGPSLVQLEQPFQGAPASQKALQIQLPPQQAQPSGSQAELPSLQPQPSWQGPPAASQGQPGAPLAGANFPMGCDKSLMTPSGESRASSIDRRTSSKERRTSSKERRAPSKDRMIFAGTFCAPRAVPTARAHLPTPWKNLPGASETFTATPRVFPATSQFQPASSNAFQGPSASSEAPKSLPFALQDPFACVEALPAVPWVPQPNVSASKASKAVPTILLATAAAPKAMATTQEASKTAAEPPRRSGKATRKKKHLNTEEDGSGQMLGMRNWQPPRRWESVDLNEWGVLGGWEGPSTSHGLSGWEGPSTSRILSGXXXTSWALSAWEGPSTSRALGLWESSCSPQSLVISELPNLAQGFGAPQDDPTLERQPLSPLDERANALVQFLLVKDQAKVPIRRSEMVRFVIREYKDECLEIINRANHKLECVFGYQLKEIDPKNHSYILVNKSHKGGAGPSYLDRPKLGLLMVVLSLIFMKGNCVRADLIFNFLYKLGLDVRETHSLFGNTRKLITKVFVRQKYLEYRRVPLTEPAEYEFLWGPRAFLETSKMLVLKFLARLHKKDPQCWPFQYLEAVAECESEDADKDEPGPGDNADDPTSSPPPS
SIO_010081: MAGEL2
subclass of: SO_0000673
so part of: MAGEL2
location: 3353496..3357036
location: region:3353496-3357036:1
so has part: feature:3353496-3357036:1:exon

XP_031296310.1
type: Protein
SIO_000068: ncbiprotein

position:3353496:1
position: 3353496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3357036:1
position: 3357036
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3353496-3357036:1:exon

MKRN3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MKRN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3391710..3393814)
location: region:3391710-3393814:-1
so has part: feature:3391710-3393814:-1:exon
subclass of: SO_0000010

105092523
type: Gene
SIO_000068: ncbigene

position:3391710:-1
position: 3391710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3393814:-1
position: 3393814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3391710-3393814:-1:exon

MKRN3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MKRN3
product: makorin ring finger protein 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010984212.2
SIO_010081: MKRN3
subclass of: SO_0000673
so part of: MKRN3
location: complement(3391710..3393814)
location: region:3391710-3393814:-1
so has part: feature:3391710-3393814:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3391710-3393814:-1:exon

MKRN3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MKRN3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable E3 ubiquitin-protein ligase makorin-3
translation: MEEPAAPSEPSEAAGAPRGAEAAGEGVSMPTRPVRPASRQTWPHSPAPFRPSRPTSAQALGGGAVPRWLPGRDSGSWTRQVVCRYYLHGLCKKGDNCQYSHDTSGRQEAREGHGGEPDTSAGEGTSMAAHMEPLPQEVAEAPPAASSSSLPLIGSAPERDFFEAEADNAGLEAAGGSDAEGWEGAVEFVPGQPYRGRSIPSVSGAPLQSLVTEREQFAEGLVEELCPDAIMGQCFRGENCMYLHGDMCELCGLQVLHPVDDAQRAEHITACIEAHERDMELSFAVQRSADKVCGICMEVVYEKANPNDCRFGILSSCNHTFCLKCIRRWRSARHFGLRVVKSCPQCRVVSTFVIPSEFWVEEEREKRRLIQQYTEALSDKTCRYFARGRVCPFEETCFYRHELPEDQGEEPQEQGAEASGSGHGLFLEPPQVGEGTMPFKSTKKELVMLWLANPLCKCFLSRGAYELPFSEDQWDLLHCELEEHFNLNLWHYAVACCLVC
SIO_010081: MKRN3
subclass of: SO_0000673
so part of: MKRN3
location: complement(3392188..3393690)
location: region:3392188-3393690:-1
so has part: feature:3392188-3393690:-1:exon

XP_010982514.1
type: Protein
SIO_000068: ncbiprotein

position:3392188:-1
position: 3392188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3393690:-1
position: 3393690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3392188-3393690:-1:exon

CHRNA7
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CHRNA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3612590..3676802)
location: region:3612590-3676802:-1
so has part: feature:3612590-3676802:-1:exon
subclass of: SO_0000010

105104257
type: Gene
SIO_000068: ncbigene

position:3612590:-1
position: 3612590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3676802:-1
position: 3676802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3612590-3676802:-1:exon

CHRNA7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CHRNA7
product: cholinergic receptor nicotinic alpha 7 subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_031440451.1
SIO_010081: CHRNA7
subclass of: SO_0000673
so part of: CHRNA7
location: complement(join(3612590..3617393,3622446..3622555,3626248..3626334,3627399..3627593,3628572..3628739,3633300..3633379,3666334..3666443,3676479..3676802))
location: region:3612590-3676802:-1
so has part: feature:3676479-3676802:-1:exon
so has part: feature:3666334-3666443:-1:exon
so has part: feature:3633300-3633379:-1:exon
so has part: feature:3628572-3628739:-1:exon
so has part: feature:3627399-3627593:-1:exon
so has part: feature:3626248-3626334:-1:exon
so has part: feature:3622446-3622555:-1:exon
so has part: feature:3612590-3617393:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3676479-3676802:-1:exon

position:3676479:-1
position: 3676479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3666334-3666443:-1:exon

position:3666334:-1
position: 3666334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3666443:-1
position: 3666443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3633300-3633379:-1:exon

position:3633300:-1
position: 3633300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3633379:-1
position: 3633379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3628572-3628739:-1:exon

position:3628572:-1
position: 3628572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3628739:-1
position: 3628739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3627399-3627593:-1:exon

position:3627399:-1
position: 3627399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3627593:-1
position: 3627593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3626248-3626334:-1:exon

position:3626248:-1
position: 3626248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3626334:-1
position: 3626334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3622446-3622555:-1:exon

position:3622446:-1
position: 3622446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3622555:-1
position: 3622555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3612590-3617393:-1:exon

position:3617393:-1
position: 3617393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CHRNA7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CHRNA7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neuronal acetylcholine receptor subunit alpha-7
translation: MSWTDHYLQWNMSEYPGVKTVRFPDGQIWKPDILLYNSADERFDATFHTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQQCKLKFGSWSYGGWSLDLQMQEADISGYIPNGEWDLVGIPGKRSEKFYECCKEPYPDVTFTVTIRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDRVRPACQHKQRRCSLASVEMSAVAGPPAANGNLLYIGFRGLDGVHCAPTPDSGVVCGRLACSPTHDEHLLHGGGPPPEGDPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDRLCLMAFSVFTIICTIGILMSAPNFVEAVSKDFA
SIO_010081: CHRNA7
subclass of: SO_0000673
so part of: CHRNA7
location: complement(join(3616872..3617393,3622446..3622555,3626248..3626334,3627399..3627593,3628572..3628739,3633300..3633379,3666334..3666443,3676479..3676481))
location: region:3616872-3676481:-1
so has part: feature:3676479-3676481:-1:exon
so has part: feature:3666334-3666443:-1:exon
so has part: feature:3633300-3633379:-1:exon
so has part: feature:3628572-3628739:-1:exon
so has part: feature:3627399-3627593:-1:exon
so has part: feature:3626248-3626334:-1:exon
so has part: feature:3622446-3622555:-1:exon
so has part: feature:3616872-3617393:-1:exon

XP_031296311.1
type: Protein
SIO_000068: ncbiprotein

position:3616872:-1
position: 3616872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3676481:-1
position: 3676481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3676479-3676481:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3666334-3666443:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3633300-3633379:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3628572-3628739:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3627399-3627593:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3626248-3626334:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3622446-3622555:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3616872-3617393:-1:exon

LOC116149429
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149429
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 3649852..3649961
location: region:3649852-3649961:1
so has part: feature:3649852-3649961:1:exon
subclass of: SO_0000623

116149429
type: Gene
SIO_000068: ncbigene

position:3649852:1
position: 3649852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3649961:1
position: 3649961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3649852-3649961:1:exon

LOC116149429
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149429
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133042.1
SIO_010081: LOC116149429
subclass of: SO_0000673
so part of: LOC116149429
location: 3649852..3649961
location: region:3649852-3649961:1
so has part: feature:3649852-3649961:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3649852-3649961:1:exon

LOC105104256
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105104256
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 3654487..3655977
location: region:3654487-3655977:1
so has part: feature:3654487-3655977:1:exon

105104256
type: Gene
SIO_000068: ncbigene

position:3654487:1
position: 3654487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3655977:1
position: 3655977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3654487-3655977:1:exon

LOC105104256
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105104256
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105104256
subclass of: SO_0000673
so part of: LOC105104256
location: 3654487..3654532
location: region:3654487-3654532:1
so has part: feature:3654487-3654532:1:exon

position:3654532:1
position: 3654532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3654487-3654532:1:exon

LOC105104256
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105104256
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105104256
subclass of: SO_0000673
so part of: LOC105104256
location: 3655226..3655977
location: region:3655226-3655977:1
so has part: feature:3655226-3655977:1:exon

position:3655226:1
position: 3655226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3655226-3655977:1:exon

LOC116149388
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149388
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3809004..3815564)
location: region:3809004-3815564:-1
so has part: feature:3809004-3815564:-1:exon
subclass of: SO_0000010

116149388
type: Gene
SIO_000068: ncbigene

position:3809004:-1
position: 3809004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3815564:-1
position: 3815564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3809004-3815564:-1:exon

LOC116149388
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149388
product: atherin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_031440871.1
SIO_010081: LOC116149388
subclass of: SO_0000673
so part of: LOC116149388
location: complement(join(3809004..3809884,3815309..3815564))
location: region:3809004-3815564:-1
so has part: feature:3815309-3815564:-1:exon
so has part: feature:3809004-3809884:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3815309-3815564:-1:exon

position:3815309:-1
position: 3815309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3809004-3809884:-1:exon

position:3809884:-1
position: 3809884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149388
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149388
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atherin-like
translation: MKYNPFSQFLATGSQEIRFRFSICLLITVHTWCQVKQAATELSHNLLSNRACKRATSSHKGLQRTRGGTETPVPFTTVNADADDKARPSGTSERCTGPLWPTQPQPRHPAGGLTRCFWAVPGSLSAARDPLRAHTDRGAGAPTPVITLQCRQLRGPAKTASATQRERRALPRRRAGRQAGAGGRGARGVQRGARKQKRRRAPRRARDPAPPGPGPGLRPLRPPASREAAEGLAPRSDGAPAGPARPGPTAAGSTAASAVSPAAPPRRSARPARSAAVAATRLPFSLVQKTRSAVAVAPVRGPSPAAARGPGASPPPPPALRSPLATLRSARRAQRPPPGSARSRQRARPLTVTGSSCAPHPPAGTCARPAPAPPTRSR
SIO_010081: LOC116149388
subclass of: SO_0000673
so part of: LOC116149388
location: complement(join(3809004..3809884,3815309..3815564))
location: region:3809004-3815564:-1
so has part: feature:3815309-3815564:-1:exon
so has part: feature:3809004-3809884:-1:exon

XP_031296731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3815309-3815564:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3809004-3809884:-1:exon

LOC116149309
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149309
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3834859..3842358
location: region:3834859-3842358:1
so has part: feature:3834859-3842358:1:exon
subclass of: SO_0000011

116149309
type: Gene
SIO_000068: ncbigene

position:3834859:1
position: 3834859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3842358:1
position: 3842358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3834859-3842358:1:exon

LOC116149309
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149309
product: uncharacterized LOC116149309
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_004132892.1
SIO_010081: LOC116149309
subclass of: SO_0000673
so part of: LOC116149309
location: join(3834859..3836991,3838952..3838956,3842348..3842358)
location: region:3834859-3842358:1
so has part: feature:3834859-3836991:1:exon
so has part: feature:3838952-3838956:1:exon
so has part: feature:3842348-3842358:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3834859-3836991:1:exon

position:3836991:1
position: 3836991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3838952-3838956:1:exon

position:3838952:1
position: 3838952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3838956:1
position: 3838956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3842348-3842358:1:exon

position:3842348:1
position: 3842348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OTUD7A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: OTUD7A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3923965..4018349
location: region:3923965-4018349:1
so has part: feature:3923965-4018349:1:exon
subclass of: SO_0000010

105093484
type: Gene
SIO_000068: ncbigene

position:3923965:1
position: 3923965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4018349:1
position: 4018349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3923965-4018349:1:exon

OTUD7A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: OTUD7A
product: OTU deubiquitinase 7A
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 4 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031440452.1
SIO_010081: OTUD7A
subclass of: SO_0000673
so part of: OTUD7A
location: join(3923965..3924414,3925008..3925162,3961968..3962150,3969797..3970015,3981982..3982083,3985719..3985846,3986552..3986664,4000584..4000711,4001697..4001846,4015135..4015249,4015421..4015505,4016630..4018349)
location: region:3923965-4018349:1
so has part: feature:3923965-3924414:1:exon
so has part: feature:3925008-3925162:1:exon
so has part: feature:3961968-3962150:1:exon
so has part: feature:3969797-3970015:1:exon
so has part: feature:3981982-3982083:1:exon
so has part: feature:3985719-3985846:1:exon
so has part: feature:3986552-3986664:1:exon
so has part: feature:4000584-4000711:1:exon
so has part: feature:4001697-4001846:1:exon
so has part: feature:4015135-4015249:1:exon
so has part: feature:4015421-4015505:1:exon
so has part: feature:4016630-4018349:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3923965-3924414:1:exon

position:3924414:1
position: 3924414
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3925008-3925162:1:exon

position:3925008:1
position: 3925008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3925162:1
position: 3925162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3961968-3962150:1:exon

position:3961968:1
position: 3961968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3962150:1
position: 3962150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3969797-3970015:1:exon

position:3969797:1
position: 3969797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3970015:1
position: 3970015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3981982-3982083:1:exon

position:3981982:1
position: 3981982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3982083:1
position: 3982083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3985719-3985846:1:exon

position:3985719:1
position: 3985719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3985846:1
position: 3985846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3986552-3986664:1:exon

position:3986552:1
position: 3986552
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3986664:1
position: 3986664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4000584-4000711:1:exon

position:4000584:1
position: 4000584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4000711:1
position: 4000711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4001697-4001846:1:exon

position:4001697:1
position: 4001697
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4001846:1
position: 4001846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4015135-4015249:1:exon

position:4015135:1
position: 4015135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4015249:1
position: 4015249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4015421-4015505:1:exon

position:4015421:1
position: 4015421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4015505:1
position: 4015505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4016630-4018349:1:exon

position:4016630:1
position: 4016630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OTUD7A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: OTUD7A
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 4 codons; deleted 1 base in 1 codon; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:4017859..4017861,aa:OTHER)
product: LOW QUALITY PROTEIN: OTU domain-containing protein 7A
translation: MWSLSEEPSERWMVSSLLPNPTSAECWAALLHDPMILDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPPVFNEGRCPKQPEREPPPPGHTADRPCLPRQEDIAQEKRLSRGISHASSAIVSLARSHVASECSNEQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKESGLVYTEEEWEREWTELLKLASSEPRTHFSKNGGTGGGVDNSEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKAWEWGRDDNDNARLAHLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLADSLDSDRDSVCSNSNSNNGKSGKDKDKEKQRKDKDKTRADSVANKLGSLSKTLGIKLKKNMGGLGGLVHGKMSRANSANGKHGDAPERGKERKAKARKGSKEESGXSASTSPSEKTTPSPTEKAAGASPADKGGGPRGDSWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAASASTVKRPPRRPDAEVAPGPEAPLRARRPGAHAVVLKLKEAPSPGPGRARGGEGGGGPRPDAASGGREXGGAGRGAEHHSSGRRREEACAPAVGALRPCATYPQQNRSLSSQSYSPARAAALRTVNTVESLARAVPGALPGXAGAAGAAEPKSQTYTNGFGAAREXLEFADAERGRALERXGRRGGPGPGPAQRRCQRENCAFYGRAETEHYCSYCYREELRRRREARGARP
SIO_010081: OTUD7A
subclass of: SO_0000673
so part of: OTUD7A
location: join(3924383..3924414,3925008..3925162,3961968..3962150,3969797..3970015,3981982..3982083,3985719..3985846,3986552..3986664,4000584..4000711,4001697..4001846,4015135..4015249,4015421..4015505,4016630..4018017)
location: region:3924383-4018017:1
so has part: feature:3924383-3924414:1:exon
so has part: feature:3925008-3925162:1:exon
so has part: feature:3961968-3962150:1:exon
so has part: feature:3969797-3970015:1:exon
so has part: feature:3981982-3982083:1:exon
so has part: feature:3985719-3985846:1:exon
so has part: feature:3986552-3986664:1:exon
so has part: feature:4000584-4000711:1:exon
so has part: feature:4001697-4001846:1:exon
so has part: feature:4015135-4015249:1:exon
so has part: feature:4015421-4015505:1:exon
so has part: feature:4016630-4018017:1:exon

XP_031296312.1
type: Protein
SIO_000068: ncbiprotein

position:3924383:1
position: 3924383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4018017:1
position: 4018017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3924383-3924414:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3925008-3925162:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3961968-3962150:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3969797-3970015:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3981982-3982083:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3985719-3985846:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3986552-3986664:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4000584-4000711:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4001697-4001846:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4015135-4015249:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4015421-4015505:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4016630-4018017:1:exon

TRNAV-CAC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAV-CAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(3924777..3924848)
location: region:3924777-3924848:-1
so has part: feature:3924777-3924848:-1:exon
subclass of: SO_0000663

116149474
type: Gene
SIO_000068: ncbigene

position:3924777:-1
position: 3924777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3924848:-1
position: 3924848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3924777-3924848:-1:exon

TRNAV-CAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAV-CAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(3924814..3924816),aa:Val, seq:cac)
SIO_010081: TRNAV-CAC
subclass of: SO_0000673
so part of: TRNAV-CAC
location: complement(3924777..3924848)
location: region:3924777-3924848:-1
so has part: feature:3924777-3924848:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3924777-3924848:-1:exon

LOC105093483
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105093483
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4052503..4053166)
location: region:4052503-4053166:-1
so has part: feature:4052503-4053166:-1:exon

105093483
type: Gene
SIO_000068: ncbigene

position:4052503:-1
position: 4052503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4053166:-1
position: 4053166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4052503-4053166:-1:exon

LOC105093483
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105093483
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105093483
subclass of: SO_0000673
so part of: LOC105093483
location: complement(4052503..4053166)
location: region:4052503-4053166:-1
so has part: feature:4052503-4053166:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4052503-4053166:-1:exon

TRNAA-GGC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAA-GGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 4087169..4087240
location: region:4087169-4087240:1
so has part: feature:4087169-4087240:1:exon
subclass of: SO_0000663

116149482
type: Gene
SIO_000068: ncbigene

position:4087169:1
position: 4087169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4087240:1
position: 4087240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4087169-4087240:1:exon

TRNAA-GGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAA-GGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon GGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:4087201..4087203,aa:Ala,seq:ggc)
SIO_010081: TRNAA-GGC
subclass of: SO_0000673
so part of: TRNAA-GGC
location: 4087169..4087240
location: region:4087169-4087240:1
so has part: feature:4087169-4087240:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4087169-4087240:1:exon

KLF13
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: KLF13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4089271..4132627)
location: region:4089271-4132627:-1
so has part: feature:4089271-4132627:-1:exon
subclass of: SO_0000010

105093482
type: Gene
SIO_000068: ncbigene

position:4089271:-1
position: 4089271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4132627:-1
position: 4132627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4089271-4132627:-1:exon

KLF13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: KLF13
product: Kruppel like factor 13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_031440453.1
SIO_010081: KLF13
subclass of: SO_0000673
so part of: KLF13
location: complement(join(4089271..4095049,4131623..4132627))
location: region:4089271-4132627:-1
so has part: feature:4131623-4132627:-1:exon
so has part: feature:4089271-4095049:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4131623-4132627:-1:exon

position:4131623:-1
position: 4131623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4089271-4095049:-1:exon

position:4095049:-1
position: 4095049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KLF13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: KLF13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Krueppel-like factor 13
translation: MSSRAVVHGFGRGRSQARGRGRCRRHPARVEERRDGKDSASLFVVARILADLTNKRRHPPLRSAERAPRPARRGPPAACRPRRPQPRAWPSPAPKAPAAAPTQPGLERARARTRGGAGARRERGPRGAASPASDKGAGRGRKSRRPRVPAEKAQVPLRRLRESLREILAPQGALRTHTGERPFACSWQDCNKKFARSDELARHYRTHTGEKKFSCPICDKRFMRSDHLTKHARRHANFHPGMLQRRGGGSRTGSLSDYSRSDASSPTISPADSP
SIO_010081: KLF13
subclass of: SO_0000673
so part of: KLF13
location: complement(join(4094757..4095049,4131623..4132154))
location: region:4094757-4132154:-1
so has part: feature:4131623-4132154:-1:exon
so has part: feature:4094757-4095049:-1:exon

XP_031296313.1
type: Protein
SIO_000068: ncbiprotein

position:4094757:-1
position: 4094757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4132154:-1
position: 4132154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4131623-4132154:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4094757-4095049:-1:exon

TRNAS-AGA
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAS-AGA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4142709..4142780)
location: region:4142709-4142780:-1
so has part: feature:4142709-4142780:-1:exon
subclass of: SO_0000663

116149475
type: Gene
SIO_000068: ncbigene

position:4142709:-1
position: 4142709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4142780:-1
position: 4142780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4142709-4142780:-1:exon

TRNAS-AGA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAS-AGA
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon AGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4142746..4142748),aa:Ser, seq:aga)
SIO_010081: TRNAS-AGA
subclass of: SO_0000673
so part of: TRNAS-AGA
location: complement(4142709..4142780)
location: region:4142709-4142780:-1
so has part: feature:4142709-4142780:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4142709-4142780:-1:exon

TRNAV-GAC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAV-GAC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4151329..4151400)
location: region:4151329-4151400:-1
so has part: feature:4151329-4151400:-1:exon
subclass of: SO_0000663

116149476
type: Gene
SIO_000068: ncbigene

position:4151329:-1
position: 4151329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4151400:-1
position: 4151400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4151329-4151400:-1:exon

TRNAV-GAC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAV-GAC
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA valine (anticodon GAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4151366..4151368),aa:Val, seq:gac)
SIO_010081: TRNAV-GAC
subclass of: SO_0000673
so part of: TRNAV-GAC
location: complement(4151329..4151400)
location: region:4151329-4151400:-1
so has part: feature:4151329-4151400:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4151329-4151400:-1:exon

LOC105093481
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105093481
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 4199379..4222389
location: region:4199379-4222389:1
so has part: feature:4199379-4222389:1:exon

105093481
type: Gene
SIO_000068: ncbigene

position:4199379:1
position: 4199379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4222389:1
position: 4222389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4199379-4222389:1:exon

LOC105093481
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105093481
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105093481
subclass of: SO_0000673
so part of: LOC105093481
location: 4199379..4199446
location: region:4199379-4199446:1
so has part: feature:4199379-4199446:1:exon

position:4199446:1
position: 4199446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4199379-4199446:1:exon

LOC105093481
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105093481
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105093481
subclass of: SO_0000673
so part of: LOC105093481
location: 4220741..4222389
location: region:4220741-4222389:1
so has part: feature:4220741-4222389:1:exon

position:4220741:1
position: 4220741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4220741-4222389:1:exon

TRPM1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4296425..4367080
location: region:4296425-4367080:1
so has part: feature:4296425-4367080:1:exon
subclass of: SO_0000010

105093470
type: Gene
SIO_000068: ncbigene

position:4296425:1
position: 4296425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4367080:1
position: 4367080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4296425-4367080:1:exon

TRPM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TRPM1
product: transient receptor potential cation channel subfamily M member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440455.1
SIO_010081: TRPM1
subclass of: SO_0000673
so part of: TRPM1
location: join(4296425..4296535,4298147..4298360,4299108..4299232,4300581..4300752,4303544..4303718,4304141..4304264,4305244..4305316,4306177..4306277,4310543..4310716,4311974..4312108,4312883..4312933,4315599..4315739,4316571..4316600,4318883..4319175,4321886..4322114,4324519..4324641,4324839..4324970,4326173..4326301,4328420..4328671,4329880..4330072,4334539..4334546,4346434..4346597,4348523..4348725,4349440..4349572,4365477..4367080)
location: region:4296425-4367080:1
so has part: feature:4296425-4296535:1:exon
so has part: feature:4298147-4298360:1:exon
so has part: feature:4299108-4299232:1:exon
so has part: feature:4300581-4300752:1:exon
so has part: feature:4303544-4303718:1:exon
so has part: feature:4304141-4304264:1:exon
so has part: feature:4305244-4305316:1:exon
so has part: feature:4306177-4306277:1:exon
so has part: feature:4310543-4310716:1:exon
so has part: feature:4311974-4312108:1:exon
so has part: feature:4312883-4312933:1:exon
so has part: feature:4315599-4315739:1:exon
so has part: feature:4316571-4316600:1:exon
so has part: feature:4318883-4319175:1:exon
so has part: feature:4321886-4322114:1:exon
so has part: feature:4324519-4324641:1:exon
so has part: feature:4324839-4324970:1:exon
so has part: feature:4326173-4326301:1:exon
so has part: feature:4328420-4328671:1:exon
so has part: feature:4329880-4330072:1:exon
so has part: feature:4334539-4334546:1:exon
so has part: feature:4346434-4346597:1:exon
so has part: feature:4348523-4348725:1:exon
so has part: feature:4349440-4349572:1:exon
so has part: feature:4365477-4367080:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4296425-4296535:1:exon

position:4296535:1
position: 4296535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4298147-4298360:1:exon

position:4298147:1
position: 4298147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4298360:1
position: 4298360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4299108-4299232:1:exon

position:4299108:1
position: 4299108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4299232:1
position: 4299232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4300581-4300752:1:exon

position:4300581:1
position: 4300581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4300752:1
position: 4300752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4303544-4303718:1:exon

position:4303544:1
position: 4303544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4303718:1
position: 4303718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4304141-4304264:1:exon

position:4304141:1
position: 4304141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4304264:1
position: 4304264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4305244-4305316:1:exon

position:4305244:1
position: 4305244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4305316:1
position: 4305316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4306177-4306277:1:exon

position:4306177:1
position: 4306177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4306277:1
position: 4306277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4310543-4310716:1:exon

position:4310543:1
position: 4310543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4310716:1
position: 4310716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4311974-4312108:1:exon

position:4311974:1
position: 4311974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4312108:1
position: 4312108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4312883-4312933:1:exon

position:4312883:1
position: 4312883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4312933:1
position: 4312933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4315599-4315739:1:exon

position:4315599:1
position: 4315599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4315739:1
position: 4315739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4316571-4316600:1:exon

position:4316571:1
position: 4316571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4316600:1
position: 4316600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4318883-4319175:1:exon

position:4318883:1
position: 4318883
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4319175:1
position: 4319175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4321886-4322114:1:exon

position:4321886:1
position: 4321886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4322114:1
position: 4322114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4324519-4324641:1:exon

position:4324519:1
position: 4324519
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4324641:1
position: 4324641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4324839-4324970:1:exon

position:4324839:1
position: 4324839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4324970:1
position: 4324970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4326173-4326301:1:exon

position:4326173:1
position: 4326173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4326301:1
position: 4326301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4328420-4328671:1:exon

position:4328420:1
position: 4328420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4328671:1
position: 4328671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:4329880-4330072:1:exon

position:4329880:1
position: 4329880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4330072:1
position: 4330072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:4334539-4334546:1:exon

position:4334539:1
position: 4334539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4334546:1
position: 4334546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:4346434-4346597:1:exon

position:4346434:1
position: 4346434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4346597:1
position: 4346597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:4348523-4348725:1:exon

position:4348523:1
position: 4348523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4348725:1
position: 4348725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:4349440-4349572:1:exon

position:4349440:1
position: 4349440
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4349572:1
position: 4349572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:4365477-4367080:1:exon

position:4365477:1
position: 4365477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRPM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TRPM1
product: transient receptor potential cation channel subfamily M member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_031440454.1
SIO_010081: TRPM1
subclass of: SO_0000673
so part of: TRPM1
location: join(4296425..4296535,4298147..4298360,4299108..4299232,4300581..4300752,4303544..4303718,4304141..4304264,4305244..4305316,4306177..4306277,4310543..4310716,4311974..4312108,4312883..4312933,4315599..4315739,4316571..4316600,4318883..4319175,4321886..4322114,4324519..4324641,4324839..4324970,4326173..4326301,4328420..4328671,4329880..4330054,4332975..4333389)
location: region:4296425-4333389:1
so has part: feature:4296425-4296535:1:exon
so has part: feature:4298147-4298360:1:exon
so has part: feature:4299108-4299232:1:exon
so has part: feature:4300581-4300752:1:exon
so has part: feature:4303544-4303718:1:exon
so has part: feature:4304141-4304264:1:exon
so has part: feature:4305244-4305316:1:exon
so has part: feature:4306177-4306277:1:exon
so has part: feature:4310543-4310716:1:exon
so has part: feature:4311974-4312108:1:exon
so has part: feature:4312883-4312933:1:exon
so has part: feature:4315599-4315739:1:exon
so has part: feature:4316571-4316600:1:exon
so has part: feature:4318883-4319175:1:exon
so has part: feature:4321886-4322114:1:exon
so has part: feature:4324519-4324641:1:exon
so has part: feature:4324839-4324970:1:exon
so has part: feature:4326173-4326301:1:exon
so has part: feature:4328420-4328671:1:exon
so has part: feature:4329880-4330054:1:exon
so has part: feature:4332975-4333389:1:exon

position:4333389:1
position: 4333389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4296425-4296535:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4298147-4298360:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4299108-4299232:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4300581-4300752:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4303544-4303718:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4304141-4304264:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4305244-4305316:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4306177-4306277:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4310543-4310716:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4311974-4312108:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4312883-4312933:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4315599-4315739:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4316571-4316600:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4318883-4319175:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4321886-4322114:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4324519-4324641:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4324839-4324970:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4326173-4326301:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4328420-4328671:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4329880-4330054:1:exon

position:4330054:1
position: 4330054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:4332975-4333389:1:exon

position:4332975:1
position: 4332975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRPM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TRPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transient receptor potential cation channel subfamily M member 1 isoform X2
translation: MYIRVSHDTKPDSLLHLMVRDWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGVSTGVISHVGDALKDHSSKSRGRVCAIGIAPWGIVENKEDLVGKDVTRVYQTMSNPLSKLSVLNNSHTHFILADNGTVGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVALVVEGGPNVVSIVLEYLREDPPVPVVVCDGSGRASDILSFAHKCSEEGGIINDSLRDQLLVTVQKTFNYNKAQSHQLLAVIMECMKKKELVTVFRMGSEGQQDIEMAILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVFGPRWPPLGSLAPPTDTKATEKEKKPPTATTKGGRGKGKGKKKGKVKEEVEEETDPRKLELLNWVNALEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVRDVKKGNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGMEDDEPPAKGKKKKKKKKEEEVDIDVDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKSMAHESSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQIAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVIMGILLPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENMDAGADAGSRKGDEENEQKKQRSVPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMERWPCLQEWVVISYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISMFMIGAILRLQRQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPSWKLARNIFYMPYWMIYGEVFADQIDRKNRIHIYNSHTSVAAPCGDNQYDEDGKRLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSRRCRKKREGDQDEKDRGLKLFLSDEELKRLHEFEEQCVQEHFQEKEDEQQSSSEERIRVTCERVENMSMRLEEINERENFMKTSLQTVDLRLSQLEELSNRMVNALENLAGIDKADLIQTRSRASSECDALHLLRQSSINSADGYSMYRYHFNGEELLYEDTSLSMPPGTGFRKKAGSFRMKGEKDQRTHLVPERQGSLHLSPSTSKPATPERGRLALDNAKSTSEPKLGPDIGISAEDDERQADSKREETIFPSSDQTDVMHGQNKTDLQSTRLTVETAKIEGTTSHPLEETKMACSYPEETFRACQTVKSRSFIYSRGRKLVSGVNNWSTEYSAVVDQTCPSTVQQWTTEWKYEVQKITRSRSTDIPYFGSEAAVEAEHRGHFTDPEDENCVSKTAPPTTRLSLAGTDRTDQENLLSVKTDQTLGFPYLRSKSLHGHPKKAKSIRGDLDRSGHASSVGNLVVVPGITTEKQQVKREKTSTETEC
SIO_010081: TRPM1
subclass of: SO_0000673
so part of: TRPM1
location: join(4296533..4296535,4298147..4298360,4299108..4299232,4300581..4300752,4303544..4303718,4304141..4304264,4305244..4305316,4306177..4306277,4310543..4310716,4311974..4312108,4312883..4312933,4315599..4315739,4316571..4316600,4318883..4319175,4321886..4322114,4324519..4324641,4324839..4324970,4326173..4326301,4328420..4328671,4329880..4330072,4334539..4334546,4346434..4346597,4348523..4348725,4349440..4349572,4365477..4366749)
location: region:4296533-4366749:1
so has part: feature:4296533-4296535:1:exon
so has part: feature:4298147-4298360:1:exon
so has part: feature:4299108-4299232:1:exon
so has part: feature:4300581-4300752:1:exon
so has part: feature:4303544-4303718:1:exon
so has part: feature:4304141-4304264:1:exon
so has part: feature:4305244-4305316:1:exon
so has part: feature:4306177-4306277:1:exon
so has part: feature:4310543-4310716:1:exon
so has part: feature:4311974-4312108:1:exon
so has part: feature:4312883-4312933:1:exon
so has part: feature:4315599-4315739:1:exon
so has part: feature:4316571-4316600:1:exon
so has part: feature:4318883-4319175:1:exon
so has part: feature:4321886-4322114:1:exon
so has part: feature:4324519-4324641:1:exon
so has part: feature:4324839-4324970:1:exon
so has part: feature:4326173-4326301:1:exon
so has part: feature:4328420-4328671:1:exon
so has part: feature:4329880-4330072:1:exon
so has part: feature:4334539-4334546:1:exon
so has part: feature:4346434-4346597:1:exon
so has part: feature:4348523-4348725:1:exon
so has part: feature:4349440-4349572:1:exon
so has part: feature:4365477-4366749:1:exon

XP_031296315.1
type: Protein
SIO_000068: ncbiprotein

position:4296533:1
position: 4296533
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4366749:1
position: 4366749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4296533-4296535:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4298147-4298360:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4299108-4299232:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4300581-4300752:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4303544-4303718:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4304141-4304264:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4305244-4305316:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4306177-4306277:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4310543-4310716:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4311974-4312108:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4312883-4312933:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4315599-4315739:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4316571-4316600:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4318883-4319175:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4321886-4322114:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4324519-4324641:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4324839-4324970:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4326173-4326301:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4328420-4328671:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4329880-4330072:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4334539-4334546:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4346434-4346597:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4348523-4348725:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4349440-4349572:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4365477-4366749:1:exon

TRPM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TRPM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transient receptor potential cation channel subfamily M member 1 isoform X1
translation: MYIRVSHDTKPDSLLHLMVRDWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGVSTGVISHVGDALKDHSSKSRGRVCAIGIAPWGIVENKEDLVGKDVTRVYQTMSNPLSKLSVLNNSHTHFILADNGTVGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVALVVEGGPNVVSIVLEYLREDPPVPVVVCDGSGRASDILSFAHKCSEEGGIINDSLRDQLLVTVQKTFNYNKAQSHQLLAVIMECMKKKELVTVFRMGSEGQQDIEMAILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVFGPRWPPLGSLAPPTDTKATEKEKKPPTATTKGGRGKGKGKKKGKVKEEVEEETDPRKLELLNWVNALEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVRDVKKGNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGMEDDEPPAKGKKKKKKKKEEEVDIDVDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKSMAHESSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQIAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVIMGILLPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENMDAGADAGSRKGDEENEQKKQRSVPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMERWPCLQEWVVISYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISMFMIGAILRLQRQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPSWKLARNIFYMPYWMIYGEVFADQIDPPCGDNQYDEDGKRLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFKYVSQPLAGCLLFIALQLFS
SIO_010081: TRPM1
subclass of: SO_0000673
so part of: TRPM1
location: join(4296533..4296535,4298147..4298360,4299108..4299232,4300581..4300752,4303544..4303718,4304141..4304264,4305244..4305316,4306177..4306277,4310543..4310716,4311974..4312108,4312883..4312933,4315599..4315739,4316571..4316600,4318883..4319175,4321886..4322114,4324519..4324641,4324839..4324970,4326173..4326301,4328420..4328671,4329880..4330054,4332975..4333180)
location: region:4296533-4333180:1
so has part: feature:4296533-4296535:1:exon
so has part: feature:4298147-4298360:1:exon
so has part: feature:4299108-4299232:1:exon
so has part: feature:4300581-4300752:1:exon
so has part: feature:4303544-4303718:1:exon
so has part: feature:4304141-4304264:1:exon
so has part: feature:4305244-4305316:1:exon
so has part: feature:4306177-4306277:1:exon
so has part: feature:4310543-4310716:1:exon
so has part: feature:4311974-4312108:1:exon
so has part: feature:4312883-4312933:1:exon
so has part: feature:4315599-4315739:1:exon
so has part: feature:4316571-4316600:1:exon
so has part: feature:4318883-4319175:1:exon
so has part: feature:4321886-4322114:1:exon
so has part: feature:4324519-4324641:1:exon
so has part: feature:4324839-4324970:1:exon
so has part: feature:4326173-4326301:1:exon
so has part: feature:4328420-4328671:1:exon
so has part: feature:4329880-4330054:1:exon
so has part: feature:4332975-4333180:1:exon

XP_031296314.1
type: Protein
SIO_000068: ncbiprotein

position:4333180:1
position: 4333180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4296533-4296535:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4298147-4298360:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4299108-4299232:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4300581-4300752:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4303544-4303718:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4304141-4304264:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4305244-4305316:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4306177-4306277:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4310543-4310716:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4311974-4312108:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4312883-4312933:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4315599-4315739:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4316571-4316600:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4318883-4319175:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4321886-4322114:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4324519-4324641:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4324839-4324970:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4326173-4326301:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4328420-4328671:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4329880-4330054:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4332975-4333180:1:exon

MTMR10
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MTMR10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4372855..4417766
location: region:4372855-4417766:1
so has part: feature:4372855-4417766:1:exon
subclass of: SO_0000010

105093469
type: Gene
SIO_000068: ncbigene

position:4372855:1
position: 4372855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4417766:1
position: 4417766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4372855-4417766:1:exon

MTMR10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MTMR10
product: myotubularin related protein 10
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_010985351.2
SIO_010081: MTMR10
subclass of: SO_0000673
so part of: MTMR10
location: join(4372855..4372915,4373466..4373526,4384641..4384777,4386343..4386415,4386889..4387031,4393518..4393608,4399660..4399843,4401753..4401840,4401923..4402011,4404276..4404406,4405566..4405635,4406262..4406332,4410006..4410175,4411217..4411387,4413704..4413886,4414925..4417766)
location: region:4372855-4417766:1
so has part: feature:4372855-4372915:1:exon
so has part: feature:4373466-4373526:1:exon
so has part: feature:4384641-4384777:1:exon
so has part: feature:4386343-4386415:1:exon
so has part: feature:4386889-4387031:1:exon
so has part: feature:4393518-4393608:1:exon
so has part: feature:4399660-4399843:1:exon
so has part: feature:4401753-4401840:1:exon
so has part: feature:4401923-4402011:1:exon
so has part: feature:4404276-4404406:1:exon
so has part: feature:4405566-4405635:1:exon
so has part: feature:4406262-4406332:1:exon
so has part: feature:4410006-4410175:1:exon
so has part: feature:4411217-4411387:1:exon
so has part: feature:4413704-4413886:1:exon
so has part: feature:4414925-4417766:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4372855-4372915:1:exon

position:4372915:1
position: 4372915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4373466-4373526:1:exon

position:4373466:1
position: 4373466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4373526:1
position: 4373526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4384641-4384777:1:exon

position:4384641:1
position: 4384641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4384777:1
position: 4384777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4386343-4386415:1:exon

position:4386343:1
position: 4386343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4386415:1
position: 4386415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4386889-4387031:1:exon

position:4386889:1
position: 4386889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4387031:1
position: 4387031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4393518-4393608:1:exon

position:4393518:1
position: 4393518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4393608:1
position: 4393608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4399660-4399843:1:exon

position:4399660:1
position: 4399660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4399843:1
position: 4399843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4401753-4401840:1:exon

position:4401753:1
position: 4401753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4401840:1
position: 4401840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4401923-4402011:1:exon

position:4401923:1
position: 4401923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4402011:1
position: 4402011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4404276-4404406:1:exon

position:4404276:1
position: 4404276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4404406:1
position: 4404406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4405566-4405635:1:exon

position:4405566:1
position: 4405566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4405635:1
position: 4405635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4406262-4406332:1:exon

position:4406262:1
position: 4406262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4406332:1
position: 4406332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4410006-4410175:1:exon

position:4410006:1
position: 4410006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4410175:1
position: 4410175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4411217-4411387:1:exon

position:4411217:1
position: 4411217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4411387:1
position: 4411387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4413704-4413886:1:exon

position:4413704:1
position: 4413704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4413886:1
position: 4413886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4414925-4417766:1:exon

position:4414925:1
position: 4414925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MTMR10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MTMR10
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: myotubularin-related protein 10
translation: MFSLKPPQTHLRSYLLPPPQTDDKIDSEPKIKKLEPVLLPGEIVVNEVNFVRKCIASDTSQYDLWGKLICSNFKISFITDDPMPLQKFHYRNLLLGEHDVPLTCIEQIVTVNDHKRKQKVLGPNQKLKFNPTELIIYCKDFRIVRFRFDESGPESAKKVCLAIAHYSQPTDLQLLFAFEYVGKKYHNSANKVNGIPSGGGGGGGLGAGGGSSLKTPLFETYSDWDREVKRTGASGWRVCSINEGYMICTCLPEYFVVPSSLADQDLKIFSHSFVGRRMPFWCWSHANGSALVRMALIKDMLQQRKIDQRICNAITKSHPQRSDVYKSDLDKTLPNIQEIQAAFVKLKQLCVNEPFEETEEKWLSSLENTRWLEYVRAFLKHSAELVYTLESKRLSVVLQEEEGRDLSCIVASLVQVMLDPYFRTITGFQSLIQKEWVMAGYQFLDRCNHLKRSEKESPLFLLFLDATWQLLEQCPAAFEFSEAYLAVLHDSTRVPLFGTFLFNCPHQRVKQSTEFAISKNIQLGDEKGLKFPSVWDWSLQFTAKDRTLFHNPLYIGKSPPCVQNGSAKSFKQTKKSYSSTLRGLPAALKNGVIGDQAALPRRNSFILRAKPEPAGPGDPGDGQDGGLDQYLRAWLSRPADLHGVILPRLSGAHIKLWKLCYFRWVPEAQIHRGGAITAFHRLSLLVDEVDVLTRTLRQHRGGPLEARYAEQDQGRMYFRARGPRDASAPPDFLSSSFPFSPVGNLCRRSILGTPLSKFLSGAKIWLSTETLANED
SIO_010081: MTMR10
subclass of: SO_0000673
so part of: MTMR10
location: join(4372855..4372915,4373466..4373526,4384641..4384777,4386343..4386415,4386889..4387031,4393518..4393608,4399660..4399843,4401753..4401840,4401923..4402011,4404276..4404406,4405566..4405635,4406262..4406332,4410006..4410175,4411217..4411387,4413704..4413886,4414925..4415530)
location: region:4372855-4415530:1
so has part: feature:4372855-4372915:1:exon
so has part: feature:4373466-4373526:1:exon
so has part: feature:4384641-4384777:1:exon
so has part: feature:4386343-4386415:1:exon
so has part: feature:4386889-4387031:1:exon
so has part: feature:4393518-4393608:1:exon
so has part: feature:4399660-4399843:1:exon
so has part: feature:4401753-4401840:1:exon
so has part: feature:4401923-4402011:1:exon
so has part: feature:4404276-4404406:1:exon
so has part: feature:4405566-4405635:1:exon
so has part: feature:4406262-4406332:1:exon
so has part: feature:4410006-4410175:1:exon
so has part: feature:4411217-4411387:1:exon
so has part: feature:4413704-4413886:1:exon
so has part: feature:4414925-4415530:1:exon

XP_010983653.2
type: Protein
SIO_000068: ncbiprotein

position:4415530:1
position: 4415530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4372855-4372915:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4373466-4373526:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4384641-4384777:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4386343-4386415:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4386889-4387031:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4393518-4393608:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4399660-4399843:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4401753-4401840:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4401923-4402011:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4404276-4404406:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4405566-4405635:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4406262-4406332:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4410006-4410175:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4411217-4411387:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4413704-4413886:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4414925-4415530:1:exon

FAN1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FAN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4419325..4448010)
location: region:4419325-4448010:-1
so has part: feature:4419325-4448010:-1:exon
subclass of: SO_0000010

105093468
type: Gene
SIO_000068: ncbigene

position:4419325:-1
position: 4419325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4448010:-1
position: 4448010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4419325-4448010:-1:exon

FAN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FAN1
product: FANCD2 and FANCI associated nuclease 1
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01108893.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 43 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440456.1
SIO_010081: FAN1
subclass of: SO_0000673
so part of: FAN1
location: complement(join(4419325..4419579,4422351..4422479,4422973..4423167,4423708..4423811,4427016..4427163,4427643..4427807,4429897..4430016,4430743..4430851,4432187..4432318,4436200..4436433,4439384..4439585,4441650..4441790,4443498..>4444711,<4447050..4447202,4447859..4448010))
location: region:4419325-4448010:-1
so has part: feature:4447859-4448010:-1:exon
so has part: feature:4447050-4447202:-1:exon
so has part: feature:4443498-4444711:-1:exon
so has part: feature:4441650-4441790:-1:exon
so has part: feature:4439384-4439585:-1:exon
so has part: feature:4436200-4436433:-1:exon
so has part: feature:4432187-4432318:-1:exon
so has part: feature:4430743-4430851:-1:exon
so has part: feature:4429897-4430016:-1:exon
so has part: feature:4427643-4427807:-1:exon
so has part: feature:4427016-4427163:-1:exon
so has part: feature:4423708-4423811:-1:exon
so has part: feature:4422973-4423167:-1:exon
so has part: feature:4422351-4422479:-1:exon
so has part: feature:4419325-4419579:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4447859-4448010:-1:exon

position:4447859:-1
position: 4447859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4447050-4447202:-1:exon

position:4447050:-1
position: 4447050
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:4447202:-1
position: 4447202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4443498-4444711:-1:exon

position:4443498:-1
position: 4443498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4444711:-1
position: 4444711
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4441650-4441790:-1:exon

position:4441650:-1
position: 4441650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4441790:-1
position: 4441790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4439384-4439585:-1:exon

position:4439384:-1
position: 4439384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4439585:-1
position: 4439585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4436200-4436433:-1:exon

position:4436200:-1
position: 4436200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4436433:-1
position: 4436433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4432187-4432318:-1:exon

position:4432187:-1
position: 4432187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4432318:-1
position: 4432318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4430743-4430851:-1:exon

position:4430743:-1
position: 4430743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4430851:-1
position: 4430851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4429897-4430016:-1:exon

position:4429897:-1
position: 4429897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4430016:-1
position: 4430016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4427643-4427807:-1:exon

position:4427643:-1
position: 4427643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4427807:-1
position: 4427807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4427016-4427163:-1:exon

position:4427016:-1
position: 4427016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4427163:-1
position: 4427163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4423708-4423811:-1:exon

position:4423708:-1
position: 4423708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4423811:-1
position: 4423811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4422973-4423167:-1:exon

position:4422973:-1
position: 4422973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4423167:-1
position: 4423167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4422351-4422479:-1:exon

position:4422351:-1
position: 4422351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4422479:-1
position: 4422479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4419325-4419579:-1:exon

position:4419579:-1
position: 4419579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FAN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FAN1
inference: similar to RNA sequence, mRNA (same species):INSD:GADT01108893.1
exception: annotated by transcript or proteomic data
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 41 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 2
product: fanconi-associated nuclease 1
translation: MSGGKSSKKRPRISLSTSKTKKNESNSIISFFNNVPPAKLTCPVCSKMVPRYDLNRHLDEMCADYDDITAGEPGHTGFSSKASTVDLTNIALEDVTPEKLSPSKINLTPGQSDSAKTGTKQQTSPYFKSNRDLVSKTQDETRDRNVKIVPLGSLSSKLSRRYMKAKRSLDENERFANQSPQSSSATAIKSLVDNCSEMEDQDQLLENSSQKENMFTSDPLKESRTPECTVEDTEIMDAESQEAARECGICTLTPDFSDTTPGLLSPDLTLGSKLQSISEDSLAKQENLAGVAGESDEIREAGSCEEVKATALSEAETQLSHWEAKSHSPTTNASKWSHSQECPLERASGLENEITPRMSSEQGSVWDVPGVTSLAPPNHPYYLRSFLVVLNAVFENEDDRMLFDEQEKGIVTQFYQLSANGQKLYVRLFQRKFSWIKMNKLEYEEIAPDLTPVVQELQQAGFLQTESELQELSEVLELLSAPELKTLAKTFHLANHSGQKQQLVDAFLKLAKQRSVCTWGRNQPGVGAVILKRAKDLAGRALRVCKGPRAVFSRVLLLFSPTDTVEDEDAACGGQGELSTVLLVSLGRVEFPRYTINRKTRIFQDRDDLIRYATAVHALSDIAAAMARGAWEEARKLSQVAQQDWDRLKNHPSLRYHERLPLFLRCFTVGWVYTRILSRTVEILQRLHRYQEAVQELENLLSQRVYCPDSRGRWWDRLALNLHQHLKRPEPAIRCIAEGLADPDVRTGHRLSLCQRAARLRESPSCQKYRHLLRQLPEMTVEDVRHVTITGRLCPQHGMGKSIFVMEAGGAAPAAVLCSVEELALAHYRCCGFDQGIHGEGSTFSTLYGLLLWDVIFMDGVPDVFRNAYQAGPLDLCTDGFFASRAPAFEARLQQIHSAPAESLRAWMAAAWQAQEGRAASVVSWDRFASLQQAQDLVSCLGGPVLSGVCRRLATDLRHCRGGLPDLVVWNSRSHCCKLVEVKGPNDRLSQKQMIWLDELRKLGADVEVCHVVAVGAKSRGPD
SIO_010081: FAN1
subclass of: SO_0000673
so part of: FAN1
location: complement(join(4419442..4419579,4422351..4422479,4422973..4423167,4423708..4423811,4427016..4427163,4427643..4427807,4429897..4430016,4430743..4430851,4432187..4432318,4436200..4436433,4439384..4439585,4441650..4441790,4443498..>4444711))
location: region:4419442-4444711:-1
so has part: feature:4443498-4444711:-1:exon
so has part: feature:4441650-4441790:-1:exon
so has part: feature:4439384-4439585:-1:exon
so has part: feature:4436200-4436433:-1:exon
so has part: feature:4432187-4432318:-1:exon
so has part: feature:4430743-4430851:-1:exon
so has part: feature:4429897-4430016:-1:exon
so has part: feature:4427643-4427807:-1:exon
so has part: feature:4427016-4427163:-1:exon
so has part: feature:4423708-4423811:-1:exon
so has part: feature:4422973-4423167:-1:exon
so has part: feature:4422351-4422479:-1:exon
so has part: feature:4419442-4419579:-1:exon

XP_031296316.1
type: Protein
SIO_000068: ncbiprotein

position:4419442:-1
position: 4419442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4443498-4444711:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4441650-4441790:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4439384-4439585:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4436200-4436433:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4432187-4432318:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4430743-4430851:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4429897-4430016:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4427643-4427807:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4427016-4427163:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4423708-4423811:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4422973-4423167:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4422351-4422479:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4419442-4419579:-1:exon

LOC116149449
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149449
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 4444951..4445099
location: region:4444951-4445099:1
so has part: feature:4444951-4445099:1:exon
subclass of: SO_0000578

116149449
type: Gene
SIO_000068: ncbigene

position:4444951:1
position: 4444951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4445099:1
position: 4445099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4444951-4445099:1:exon

LOC116149449
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149449
product: small nucleolar RNA SNORA79
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00600
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133060.1
SIO_010081: LOC116149449
subclass of: SO_0000673
so part of: LOC116149449
location: 4444951..4445099
location: region:4444951-4445099:1
so has part: feature:4444951-4445099:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4444951-4445099:1:exon

LOC116149453
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149453
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 4445726..4445869
location: region:4445726-4445869:1
so has part: feature:4445726-4445869:1:exon
subclass of: SO_0000578

116149453
type: Gene
SIO_000068: ncbigene

position:4445726:1
position: 4445726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4445869:1
position: 4445869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4445726-4445869:1:exon

LOC116149453
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149453
product: small nucleolar RNA SNORA79
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00600
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133065.1
SIO_010081: LOC116149453
subclass of: SO_0000673
so part of: LOC116149453
location: 4445726..4445869
location: region:4445726-4445869:1
so has part: feature:4445726-4445869:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4445726-4445869:1:exon

LOC116149452
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149452
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 4446500..4446644
location: region:4446500-4446644:1
so has part: feature:4446500-4446644:1:exon
subclass of: SO_0000578

116149452
type: Gene
SIO_000068: ncbigene

position:4446500:1
position: 4446500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4446644:1
position: 4446644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4446500-4446644:1:exon

LOC116149452
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149452
product: small nucleolar RNA SNORA79
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00600
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133063.1
SIO_010081: LOC116149452
subclass of: SO_0000673
so part of: LOC116149452
location: 4446500..4446644
location: region:4446500-4446644:1
so has part: feature:4446500-4446644:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4446500-4446644:1:exon

LOC116149451
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149451
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4447425..4447573)
location: region:4447425-4447573:-1
so has part: feature:4447425-4447573:-1:exon
subclass of: SO_0000578

116149451
type: Gene
SIO_000068: ncbigene

position:4447425:-1
position: 4447425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4447573:-1
position: 4447573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4447425-4447573:-1:exon

LOC116149451
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snoRNA
gene: LOC116149451
product: small nucleolar RNA SNORA79
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00600
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133062.1
SIO_010081: LOC116149451
subclass of: SO_0000673
so part of: LOC116149451
location: complement(4447425..4447573)
location: region:4447425-4447573:-1
so has part: feature:4447425-4447573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4447425-4447573:-1:exon

MPHOSPH10
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MPHOSPH10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4459293..4475721)
location: region:4459293-4475721:-1
so has part: feature:4459293-4475721:-1:exon
subclass of: SO_0000010

105093467
type: Gene
SIO_000068: ncbigene

position:4459293:-1
position: 4459293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4475721:-1
position: 4475721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4459293-4475721:-1:exon

MPHOSPH10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MPHOSPH10
product: M-phase phosphoprotein 10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_010985349.2
SIO_010081: MPHOSPH10
subclass of: SO_0000673
so part of: MPHOSPH10
location: complement(join(4459293..4459532,4459912..4460142,4461141..4461248,4462848..4462958,4467756..4467893,4468876..4468943,4469790..4469931,4472007..4472175,4472860..4473008,4473661..4474348,4475285..4475721))
location: region:4459293-4475721:-1
so has part: feature:4475285-4475721:-1:exon
so has part: feature:4473661-4474348:-1:exon
so has part: feature:4472860-4473008:-1:exon
so has part: feature:4472007-4472175:-1:exon
so has part: feature:4469790-4469931:-1:exon
so has part: feature:4468876-4468943:-1:exon
so has part: feature:4467756-4467893:-1:exon
so has part: feature:4462848-4462958:-1:exon
so has part: feature:4461141-4461248:-1:exon
so has part: feature:4459912-4460142:-1:exon
so has part: feature:4459293-4459532:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4475285-4475721:-1:exon

position:4475285:-1
position: 4475285
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4473661-4474348:-1:exon

position:4473661:-1
position: 4473661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4474348:-1
position: 4474348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4472860-4473008:-1:exon

position:4472860:-1
position: 4472860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4473008:-1
position: 4473008
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4472007-4472175:-1:exon

position:4472007:-1
position: 4472007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4472175:-1
position: 4472175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4469790-4469931:-1:exon

position:4469790:-1
position: 4469790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4469931:-1
position: 4469931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4468876-4468943:-1:exon

position:4468876:-1
position: 4468876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4468943:-1
position: 4468943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4467756-4467893:-1:exon

position:4467756:-1
position: 4467756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4467893:-1
position: 4467893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4462848-4462958:-1:exon

position:4462848:-1
position: 4462848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4462958:-1
position: 4462958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4461141-4461248:-1:exon

position:4461141:-1
position: 4461141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4461248:-1
position: 4461248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4459912-4460142:-1:exon

position:4459912:-1
position: 4459912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4460142:-1
position: 4460142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4459293-4459532:-1:exon

position:4459532:-1
position: 4459532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MPHOSPH10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MPHOSPH10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U3 small nucleolar ribonucleoprotein protein MPP10
translation: MAPRVWRRRTLERCLRDVGKATERPERFLTIQDELASNFTSLTKVLYDFNKILENDRKHGSPLQKLMIRNFDDEQIWQQLELQNEPILQYFENAVSETIEDEDLSLLPESEEQECEDDVSAMEAGSQEDLGQDVEEEEDEEEEEEVSYLSGGDPGGIERAKNSSKLDLSKSPDFSDEDSDLDFDISKLEQQSKVQTKVPRKPTEKSEVDDKFFKLSEMETFLENMEKEEEQKEEEEEIDFFEDVDSDEGEGLFGSQNLKSGKSSRNLKYKDFFDPVESDEDAAGVHDDELGSNEEEEIAEEEEDSISDMDEDDDLEESENGKRRETLKRVTFALPDDEETEDTDTLNVQKDSDEVKSSFEKRQEKMNEKIASLEKELLEKKPWQLQGEVTAQKRPENSLLEETLHFDHAVRMAPVITEETTLQLEDIIKQRIKDQAWDDVVRKEKPKEDAFEYKKRITLDHEKSKLSLAEIYEQEYIRLNQQKTEEEENPEHVEIQKMMDSLFLKLDALSNFHFIPKPPVPEIKVVSNLPAITMEDVAPVSVSDAALLAPEEVKEKNKAGDIKTAAEKTSTDKKRERRKKKYRKHMKIKEKEKQRRLVEKSNPDQAGKWTKAVASERLKQLTKTGRASLLKDEGKDKALKSSQAFFSQLQDQVKMQISDAKKTEKKTKKKQDVSVHKLKL
SIO_010081: MPHOSPH10
subclass of: SO_0000673
so part of: MPHOSPH10
location: complement(join(4459383..4459532,4459912..4460142,4461141..4461248,4462848..4462958,4467756..4467893,4468876..4468943,4469790..4469931,4472007..4472175,4472860..4473008,4473661..4474348,4475285..4475373))
location: region:4459383-4475373:-1
so has part: feature:4475285-4475373:-1:exon
so has part: feature:4473661-4474348:-1:exon
so has part: feature:4472860-4473008:-1:exon
so has part: feature:4472007-4472175:-1:exon
so has part: feature:4469790-4469931:-1:exon
so has part: feature:4468876-4468943:-1:exon
so has part: feature:4467756-4467893:-1:exon
so has part: feature:4462848-4462958:-1:exon
so has part: feature:4461141-4461248:-1:exon
so has part: feature:4459912-4460142:-1:exon
so has part: feature:4459383-4459532:-1:exon

XP_010983651.1
type: Protein
SIO_000068: ncbiprotein

position:4459383:-1
position: 4459383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4475373:-1
position: 4475373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4475285-4475373:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4473661-4474348:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4472860-4473008:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4472007-4472175:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4469790-4469931:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4468876-4468943:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4467756-4467893:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4462848-4462958:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4461141-4461248:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4459912-4460142:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4459383-4459532:-1:exon

MCEE
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MCEE
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4475820..4495881
location: region:4475820-4495881:1
so has part: feature:4475820-4495881:1:exon
subclass of: SO_0000010

105093466
type: Gene
SIO_000068: ncbigene

position:4475820:1
position: 4475820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4495881:1
position: 4495881
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4475820-4495881:1:exon

MCEE
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MCEE
product: methylmalonyl-CoA epimerase
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_010985346.2
SIO_010081: MCEE
subclass of: SO_0000673
so part of: MCEE
location: join(4475820..4475955,4483573..4483910,4495292..4495881)
location: region:4475820-4495881:1
so has part: feature:4475820-4475955:1:exon
so has part: feature:4483573-4483910:1:exon
so has part: feature:4495292-4495881:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4475820-4475955:1:exon

position:4475955:1
position: 4475955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4483573-4483910:1:exon

position:4483573:1
position: 4483573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4483910:1
position: 4483910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4495292-4495881:1:exon

position:4495292:1
position: 4495292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MCEE
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MCEE
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methylmalonyl-CoA epimerase, mitochondrial
translation: MARVLAGIAVGLFSRLQTAVPTVKTFSTSQSSLQVPGASWNLGQLNHVAVAVPDLEKAKVLYKDVLGAQVSEAVPLPEHGVSVVFVNLGNTKIELLHPLGSDSPVAGFLQKNKAGGMHHVCIEVDDINAAMADLKAKKIRILSEEAKIGAHGKPVIFLHPKDCGGVLVELEQA
SIO_010081: MCEE
subclass of: SO_0000673
so part of: MCEE
location: join(4475925..4475955,4483573..4483910,4495292..4495444)
location: region:4475925-4495444:1
so has part: feature:4475925-4475955:1:exon
so has part: feature:4483573-4483910:1:exon
so has part: feature:4495292-4495444:1:exon

XP_010983648.1
type: Protein
SIO_000068: ncbiprotein

position:4475925:1
position: 4475925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4495444:1
position: 4495444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4475925-4475955:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4483573-4483910:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4495292-4495444:1:exon

LOC116149390
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149390
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4516685..4517835)
location: region:4516685-4517835:-1
so has part: feature:4516685-4517835:-1:exon
subclass of: SO_0000010

116149390
type: Gene
SIO_000068: ncbigene

position:4516685:-1
position: 4516685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4517835:-1
position: 4517835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4516685-4517835:-1:exon

LOC116149390
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149390
product: vegetative cell wall protein gp1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_031440873.1
SIO_010081: LOC116149390
subclass of: SO_0000673
so part of: LOC116149390
location: complement(join(4516685..4517657,4517744..4517835))
location: region:4516685-4517835:-1
so has part: feature:4517744-4517835:-1:exon
so has part: feature:4516685-4517657:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4517744-4517835:-1:exon

position:4517744:-1
position: 4517744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4516685-4517657:-1:exon

position:4517657:-1
position: 4517657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC116149390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149390
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vegetative cell wall protein gp1-like
translation: MGQIREGSPRDPGVGFLIEEFLAGPHYKGKSAQRGRETLQRRSGPAGPAEPERVAAASPCPSPRPVSPCRAPTPGIVQRLPPAAPARRRGDPVSPRYPSPPIAPPAPWSPRWPAPPRLRLPASRAASPPAYLAGRGAAWCTGRPRPAAPALSASRAPGSPPLFVSPPSRAPSCCSPRTANTSRPYAPPGPSAACCTVFPCPPPPVLICRPAPPPPLPPSPDIPPPPPTARLEGREDKDARVPHRPPPPPEPGYTRRGGWADAPGVRVLRDPRSTLIPGRAPDLPDREPLGSGLRAGRTGDSEAPSRPHAAPGPALPPGVLLILGGLGGAAAYLALLGPVSGVREGGPRLEALGE
SIO_010081: LOC116149390
subclass of: SO_0000673
so part of: LOC116149390
location: complement(join(4516685..4517657,4517744..4517835))
location: region:4516685-4517835:-1
so has part: feature:4517744-4517835:-1:exon
so has part: feature:4516685-4517657:-1:exon

XP_031296733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4517744-4517835:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4516685-4517657:-1:exon

APBA2
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: APBA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4516821..4693398
location: region:4516821-4693398:1
so has part: feature:4516821-4693398:1:exon
subclass of: SO_0000010

105093465
type: Gene
SIO_000068: ncbigene

position:4516821:1
position: 4516821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4693398:1
position: 4693398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4516821-4693398:1:exon

APBA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: APBA2
product: amyloid beta precursor protein binding family A member 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_031440458.1
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4516821..4516962,4544809..4544914,4594947..4595000,4631940..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4671671..4671706,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4693398)
location: region:4516821-4693398:1
so has part: feature:4516821-4516962:1:exon
so has part: feature:4544809-4544914:1:exon
so has part: feature:4594947-4595000:1:exon
so has part: feature:4631940-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4671671-4671706:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4693398:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4516821-4516962:1:exon

position:4516962:1
position: 4516962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4544809-4544914:1:exon

position:4544809:1
position: 4544809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4544914:1
position: 4544914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4594947-4595000:1:exon

position:4594947:1
position: 4594947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4595000:1
position: 4595000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4631940-4632929:1:exon

position:4631940:1
position: 4631940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4632929:1
position: 4632929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4655330-4655410:1:exon

position:4655330:1
position: 4655330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4655410:1
position: 4655410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4656689-4656725:1:exon

position:4656689:1
position: 4656689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4656725:1
position: 4656725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4670779-4670924:1:exon

position:4670779:1
position: 4670779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4670924:1
position: 4670924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4671671-4671706:1:exon

position:4671671:1
position: 4671671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4671706:1
position: 4671706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4674560-4674646:1:exon

position:4674560:1
position: 4674560
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4674646:1
position: 4674646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4680360-4680545:1:exon

position:4680360:1
position: 4680360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4680545:1
position: 4680545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4683665-4683844:1:exon

position:4683665:1
position: 4683665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4683844:1
position: 4683844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4684735-4684947:1:exon

position:4684735:1
position: 4684735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4684947:1
position: 4684947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4686431-4686550:1:exon

position:4686431:1
position: 4686431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4686550:1
position: 4686550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4689302-4689442:1:exon

position:4689302:1
position: 4689302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4689442:1
position: 4689442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4692236-4693398:1:exon

position:4692236:1
position: 4692236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

APBA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: APBA2
product: amyloid beta precursor protein binding family A member 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031440457.1
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4517229..4517356,4544809..4544914,4594947..4595000,4631940..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4671671..4671706,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4693398)
location: region:4517229-4693398:1
so has part: feature:4517229-4517356:1:exon
so has part: feature:4544809-4544914:1:exon
so has part: feature:4594947-4595000:1:exon
so has part: feature:4631940-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4671671-4671706:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4693398:1:exon

position:4517229:1
position: 4517229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4517229-4517356:1:exon

position:4517356:1
position: 4517356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4544809-4544914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4594947-4595000:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4631940-4632929:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4671671-4671706:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4692236-4693398:1:exon

APBA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: APBA2
product: amyloid beta precursor protein binding family A member 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031440460.1
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4517229..4517356,4544809..4544914,4594947..4595000,4631940..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4693398)
location: region:4517229-4693398:1
so has part: feature:4517229-4517356:1:exon
so has part: feature:4544809-4544914:1:exon
so has part: feature:4594947-4595000:1:exon
so has part: feature:4631940-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4693398:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4517229-4517356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4544809-4544914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4594947-4595000:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4631940-4632929:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4692236-4693398:1:exon

APBA2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: APBA2
product: amyloid beta precursor protein binding family A member 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_031440459.1
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4517229..4517356,4544809..4544914,4631940..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4671671..4671706,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4693398)
location: region:4517229-4693398:1
so has part: feature:4517229-4517356:1:exon
so has part: feature:4544809-4544914:1:exon
so has part: feature:4631940-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4671671-4671706:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4693398:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4517229-4517356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4544809-4544914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4631940-4632929:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4671671-4671706:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4692236-4693398:1:exon

APBA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: APBA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta A4 precursor protein-binding family A member 2 isoform X1
translation: MANRTRESTASSMLDHRARPGRGPHGQEPESEDTELPLEEYAPPGLEPPALRPESPAPAEPGGHDHSPDGDSSSDYVNNTSEEEDYDEGLPEEEEGITYYIRYCPEDDSYLEGMDCNGEGYLAHGARHLETDECQEAVEEWKTGRPDPARTARTTGTAALPIPEDESSVLEAQDQEEGVHYCASEEGYPDYYPTEANGNAGGASPYRPRRGDGDLEDQEEDIDQIVAEIKMSLSMTSIASAGEASPEHAPARGPEPGPGDSAEAGPPGEASCGPSRHEGRPKCLNLPPEAKHSGDPQRSFKTKTRTPEERPKWPQEQVCNGLEQPRKQQRSDLNGPVDNNNIPETKKVASFPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4631979..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4671671..4671706,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4692307)
location: region:4631979-4692307:1
so has part: feature:4631979-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4671671-4671706:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4692307:1:exon

XP_031296317.1
type: Protein
SIO_000068: ncbiprotein

position:4631979:1
position: 4631979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4692307:1
position: 4692307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4631979-4632929:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4671671-4671706:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4692236-4692307:1:exon

APBA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: APBA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta A4 precursor protein-binding family A member 2 isoform X1
translation: MANRTRESTASSMLDHRARPGRGPHGQEPESEDTELPLEEYAPPGLEPPALRPESPAPAEPGGHDHSPDGDSSSDYVNNTSEEEDYDEGLPEEEEGITYYIRYCPEDDSYLEGMDCNGEGYLAHGARHLETDECQEAVEEWKTGRPDPARTARTTGTAALPIPEDESSVLEAQDQEEGVHYCASEEGYPDYYPTEANGNAGGASPYRPRRGDGDLEDQEEDIDQIVAEIKMSLSMTSIASAGEASPEHAPARGPEPGPGDSAEAGPPGEASCGPSRHEGRPKCLNLPPEAKHSGDPQRSFKTKTRTPEERPKWPQEQVCNGLEQPRKQQRSDLNGPVDNNNIPETKKVASFPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4631979..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4671671..4671706,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4692307)
location: region:4631979-4692307:1
so has part: feature:4631979-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4671671-4671706:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4692307:1:exon

XP_031296318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4631979-4632929:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4671671-4671706:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4692236-4692307:1:exon

APBA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: APBA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta A4 precursor protein-binding family A member 2 isoform X1
translation: MANRTRESTASSMLDHRARPGRGPHGQEPESEDTELPLEEYAPPGLEPPALRPESPAPAEPGGHDHSPDGDSSSDYVNNTSEEEDYDEGLPEEEEGITYYIRYCPEDDSYLEGMDCNGEGYLAHGARHLETDECQEAVEEWKTGRPDPARTARTTGTAALPIPEDESSVLEAQDQEEGVHYCASEEGYPDYYPTEANGNAGGASPYRPRRGDGDLEDQEEDIDQIVAEIKMSLSMTSIASAGEASPEHAPARGPEPGPGDSAEAGPPGEASCGPSRHEGRPKCLNLPPEAKHSGDPQRSFKTKTRTPEERPKWPQEQVCNGLEQPRKQQRSDLNGPVDNNNIPETKKVASFPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4631979..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4671671..4671706,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4692307)
location: region:4631979-4692307:1
so has part: feature:4631979-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4671671-4671706:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4692307:1:exon

XP_031296319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4631979-4632929:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4671671-4671706:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4692236-4692307:1:exon

APBA2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: APBA2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: amyloid-beta A4 precursor protein-binding family A member 2 isoform X2
translation: MANRTRESTASSMLDHRARPGRGPHGQEPESEDTELPLEEYAPPGLEPPALRPESPAPAEPGGHDHSPDGDSSSDYVNNTSEEEDYDEGLPEEEEGITYYIRYCPEDDSYLEGMDCNGEGYLAHGARHLETDECQEAVEEWKTGRPDPARTARTTGTAALPIPEDESSVLEAQDQEEGVHYCASEEGYPDYYPTEANGNAGGASPYRPRRGDGDLEDQEEDIDQIVAEIKMSLSMTSIASAGEASPEHAPARGPEPGPGDSAEAGPPGEASCGPSRHEGRPKCLNLPPEAKHSGDPQRSFKTKTRTPEERPKWPQEQVCNGLEQPRKQQRSDLNGPVDNNNIPETKKVASFPSFVAVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKNSEGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI
SIO_010081: APBA2
subclass of: SO_0000673
so part of: APBA2
location: join(4631979..4632929,4655330..4655410,4656689..4656725,4670779..4670924,4674560..4674646,4680360..4680545,4683665..4683844,4684735..4684947,4686431..4686550,4689302..4689442,4692236..4692307)
location: region:4631979-4692307:1
so has part: feature:4631979-4632929:1:exon
so has part: feature:4655330-4655410:1:exon
so has part: feature:4656689-4656725:1:exon
so has part: feature:4670779-4670924:1:exon
so has part: feature:4674560-4674646:1:exon
so has part: feature:4680360-4680545:1:exon
so has part: feature:4683665-4683844:1:exon
so has part: feature:4684735-4684947:1:exon
so has part: feature:4686431-4686550:1:exon
so has part: feature:4689302-4689442:1:exon
so has part: feature:4692236-4692307:1:exon

XP_031296320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4631979-4632929:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4655330-4655410:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4656689-4656725:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4670779-4670924:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4674560-4674646:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4680360-4680545:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4683665-4683844:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4684735-4684947:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4686431-4686550:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4689302-4689442:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4692236-4692307:1:exon

LOC116149312
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149312
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4692831..4695870)
location: region:4692831-4695870:-1
so has part: feature:4692831-4695870:-1:exon
subclass of: SO_0000011

116149312
type: Gene
SIO_000068: ncbigene

position:4692831:-1
position: 4692831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4695870:-1
position: 4695870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4692831-4695870:-1:exon

LOC116149312
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149312
product: uncharacterized LOC116149312
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_004132893.1
SIO_010081: LOC116149312
subclass of: SO_0000673
so part of: LOC116149312
location: complement(join(4692831..4693247,4693676..4693775,4694152..4695870))
location: region:4692831-4695870:-1
so has part: feature:4694152-4695870:-1:exon
so has part: feature:4693676-4693775:-1:exon
so has part: feature:4692831-4693247:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4694152-4695870:-1:exon

position:4694152:-1
position: 4694152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4693676-4693775:-1:exon

position:4693676:-1
position: 4693676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4693775:-1
position: 4693775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4692831-4693247:-1:exon

position:4693247:-1
position: 4693247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FAM189A1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: FAM189A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4695901..>4968440)
location: region:4695901-4968440:-1
so has part: feature:4695901-4968440:-1:exon
subclass of: SO_0000010

105093480
type: Gene
SIO_000068: ncbigene

position:4695901:-1
position: 4695901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4968440:-1
position: 4968440
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4695901-4968440:-1:exon

FAM189A1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: FAM189A1
product: family with sequence similarity 189 member A1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_031440881.1
SIO_010081: FAM189A1
subclass of: SO_0000673
so part of: FAM189A1
location: complement(join(4695901..4697403,4698303..4698377,4699837..4700055,4705057..4705132,4710019..4710154,4710710..4710870,4716061..4716168,4727488..4727622,4752217..4752327,4858020..4858076,4968030..>4968440))
location: region:4695901-4968440:-1
so has part: feature:4968030-4968440:-1:exon
so has part: feature:4858020-4858076:-1:exon
so has part: feature:4752217-4752327:-1:exon
so has part: feature:4727488-4727622:-1:exon
so has part: feature:4716061-4716168:-1:exon
so has part: feature:4710710-4710870:-1:exon
so has part: feature:4710019-4710154:-1:exon
so has part: feature:4705057-4705132:-1:exon
so has part: feature:4699837-4700055:-1:exon
so has part: feature:4698303-4698377:-1:exon
so has part: feature:4695901-4697403:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4968030-4968440:-1:exon

position:4968030:-1
position: 4968030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4858020-4858076:-1:exon

position:4858020:-1
position: 4858020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4858076:-1
position: 4858076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4752217-4752327:-1:exon

position:4752217:-1
position: 4752217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4752327:-1
position: 4752327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4727488-4727622:-1:exon

position:4727488:-1
position: 4727488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4727622:-1
position: 4727622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4716061-4716168:-1:exon

position:4716061:-1
position: 4716061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4716168:-1
position: 4716168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4710710-4710870:-1:exon

position:4710710:-1
position: 4710710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4710870:-1
position: 4710870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4710019-4710154:-1:exon

position:4710019:-1
position: 4710019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4710154:-1
position: 4710154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4705057-4705132:-1:exon

position:4705057:-1
position: 4705057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4705132:-1
position: 4705132
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4699837-4700055:-1:exon

position:4699837:-1
position: 4699837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4700055:-1
position: 4700055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4698303-4698377:-1:exon

position:4698303:-1
position: 4698303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4698377:-1
position: 4698377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4695901-4697403:-1:exon

position:4697403:-1
position: 4697403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FAM189A1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: FAM189A1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein FAM189A1
translation: HGAALDLRPRSPPPPPPRRAPPQRAGEAVPAAGAQLALLTLVRRGCRRRAAPGPSGPGRSVRRLPRDASAAARAPLPAARPAACPPAQCPGRSRIVLALGATQMALGCLIVAVSFAALALTTSARVRHSCPFWAGFSVLLSGLIGVVSWKRPLSLVITFFMLLSAVCVMLNLAGSILSCQNAQLVNSLEGCQLIKFDSVEVCVCCEMQHQSSGCSNLGETLKLNPLQEDCNAVRLTLKDLLFSVCALNVLSTIVCALATAMCCMQMVSSDVLQMFLPQRAPSASPACVTPHGTVLHQTLDFDEFVPPLPPPPYYPPEYTCTPTAEAHRGLHLDFAPSPFGTLYGVAINSPGLLYPAELPPPYEAVVGPSPASQLTSADQQVTEPSSGDPEATTGFSTQAPADSTSLLASEGAAAPGLSCPSPDGPPGSPLPAPRPDHTSPEGPTQGMRERLGPRRVARSVSDPTSCMSRTAGDASAHTPSHCQDLEAGLSRAALGTASLSHSFTAACVSGHQLSPPGEPDAWKAGQRLKPEALQTVSKEQPHPLVDSKAYADTRVLVAKFLEHASCALPSEVRHVVGSTRSAIPREERHVEEAVLSARVLEQL
SIO_010081: FAM189A1
subclass of: SO_0000673
so part of: FAM189A1
location: complement(join(4697081..4697403,4698303..4698377,4699837..4700055,4705057..4705132,4710019..4710154,4710710..4710870,4716061..4716168,4727488..4727622,4752217..4752327,4858020..4858076,4968030..>4968440))
location: region:4697081-4968440:-1
so has part: feature:4968030-4968440:-1:exon
so has part: feature:4858020-4858076:-1:exon
so has part: feature:4752217-4752327:-1:exon
so has part: feature:4727488-4727622:-1:exon
so has part: feature:4716061-4716168:-1:exon
so has part: feature:4710710-4710870:-1:exon
so has part: feature:4710019-4710154:-1:exon
so has part: feature:4705057-4705132:-1:exon
so has part: feature:4699837-4700055:-1:exon
so has part: feature:4698303-4698377:-1:exon
so has part: feature:4697081-4697403:-1:exon

XP_031296741.1
type: Protein
SIO_000068: ncbiprotein

position:4697081:-1
position: 4697081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4968030-4968440:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4858020-4858076:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4752217-4752327:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4727488-4727622:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4716061-4716168:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4710710-4710870:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4710019-4710154:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4705057-4705132:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4699837-4700055:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4698303-4698377:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4697081-4697403:-1:exon

NSMCE3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: NSMCE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4762368..4764020)
location: region:4762368-4764020:-1
so has part: feature:4762368-4764020:-1:exon
subclass of: SO_0000010

105093464
type: Gene
SIO_000068: ncbigene

position:4762368:-1
position: 4762368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4764020:-1
position: 4764020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4762368-4764020:-1:exon

NSMCE3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: NSMCE3
product: NSE3 homolog, SMC5-SMC6 complex component
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440461.1
SIO_010081: NSMCE3
subclass of: SO_0000673
so part of: NSMCE3
location: complement(4762368..4764020)
location: region:4762368-4764020:-1
so has part: feature:4762368-4764020:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4762368-4764020:-1:exon

NSMCE3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: NSMCE3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: non-structural maintenance of chromosomes element 3 homolog
translation: MLQKPKSRGRAGSQPEREQDGGRGGGGAEEAPSTSRGAAGVGWQGSRRAEASPKAGPRSQKQLELKVAELVQFLLIKDQKKIPIKRADILKHVVGDYKDIFPDLLKLAAQRLEYVFGYRLVELEPKSNTYILINTLEPVEEDAEVRGDQGTPTTGLLMIVLGLIFMKGNSIKETEVWDFLRRLGVHPTKKHLIFGDPKKLITEDFVRQRYLEYRRIPHTDPVDYEFQWGPRTNLETSKMKVLKFVAKVHNQDPKDWPAQYCEALAEEEARAIPQTGGPAPSS
SIO_010081: NSMCE3
subclass of: SO_0000673
so part of: NSMCE3
location: complement(4763030..4763878)
location: region:4763030-4763878:-1
so has part: feature:4763030-4763878:-1:exon

XP_031296321.1
type: Protein
SIO_000068: ncbiprotein

position:4763030:-1
position: 4763030
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4763878:-1
position: 4763878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4763030-4763878:-1:exon

LOC116149460
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149460
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4904627..4904736)
location: region:4904627-4904736:-1
so has part: feature:4904627-4904736:-1:exon
subclass of: SO_0000623

116149460
type: Gene
SIO_000068: ncbigene

position:4904627:-1
position: 4904627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4904736:-1
position: 4904736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4904627-4904736:-1:exon

LOC116149460
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149460
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133072.1
SIO_010081: LOC116149460
subclass of: SO_0000673
so part of: LOC116149460
location: complement(4904627..4904736)
location: region:4904627-4904736:-1
so has part: feature:4904627-4904736:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4904627-4904736:-1:exon

TRNAS-AGA
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAS-AGA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 4955321..4955392
location: region:4955321-4955392:1
so has part: feature:4955321-4955392:1:exon
subclass of: SO_0000663

116149483
type: Gene
SIO_000068: ncbigene

position:4955321:1
position: 4955321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4955392:1
position: 4955392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4955321-4955392:1:exon

TRNAS-AGA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAS-AGA
product: tRNA-Ser
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA serine (anticodon AGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:4955353..4955355,aa:Ser,seq:aga)
SIO_010081: TRNAS-AGA
subclass of: SO_0000673
so part of: TRNAS-AGA
location: 4955321..4955392
location: region:4955321-4955392:1
so has part: feature:4955321-4955392:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4955321-4955392:1:exon

TRNAA-UGC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAA-UGC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4987438..4987509)
location: region:4987438-4987509:-1
so has part: feature:4987438-4987509:-1:exon
subclass of: SO_0000663

116149477
type: Gene
SIO_000068: ncbigene

position:4987438:-1
position: 4987438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4987509:-1
position: 4987509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4987438-4987509:-1:exon

TRNAA-UGC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAA-UGC
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA alanine (anticodon UGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4987475..4987477),aa:Ala, seq:tgc)
SIO_010081: TRNAA-UGC
subclass of: SO_0000673
so part of: TRNAA-UGC
location: complement(4987438..4987509)
location: region:4987438-4987509:-1
so has part: feature:4987438-4987509:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4987438-4987509:-1:exon

TJP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TJP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5009844..5222028)
location: region:5009844-5222028:-1
so has part: feature:5009844-5222028:-1:exon
subclass of: SO_0000010

105093462
type: Gene
SIO_000068: ncbigene

position:5009844:-1
position: 5009844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5222028:-1
position: 5222028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5009844-5222028:-1:exon

TJP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TJP1
product: tight junction protein 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_031440462.1
SIO_010081: TJP1
subclass of: SO_0000673
so part of: TJP1
location: complement(join(5009844..5011339,5013946..5014089,5015039..5015256,5016750..5017224,5020043..5020224,5024255..5024482,5025638..5025735,5025867..5026742,5027380..5027619,5027945..5028295,5031230..5031330,5031618..5031828,5032448..5032530,5034939..5035034,5035138..5035322,5035581..5035800,5036769..5036877,5038838..5038988,5041667..5041772,5042614..5042753,5051936..5052083,5052376..5052544,5053134..5053237,5056470..5056746,5063373..5063475,5064158..5064282,5081888..5081944,5209974..5210106,5221795..5222028))
location: region:5009844-5222028:-1
so has part: feature:5221795-5222028:-1:exon
so has part: feature:5209974-5210106:-1:exon
so has part: feature:5081888-5081944:-1:exon
so has part: feature:5064158-5064282:-1:exon
so has part: feature:5063373-5063475:-1:exon
so has part: feature:5056470-5056746:-1:exon
so has part: feature:5053134-5053237:-1:exon
so has part: feature:5052376-5052544:-1:exon
so has part: feature:5051936-5052083:-1:exon
so has part: feature:5042614-5042753:-1:exon
so has part: feature:5041667-5041772:-1:exon
so has part: feature:5038838-5038988:-1:exon
so has part: feature:5036769-5036877:-1:exon
so has part: feature:5035581-5035800:-1:exon
so has part: feature:5035138-5035322:-1:exon
so has part: feature:5034939-5035034:-1:exon
so has part: feature:5032448-5032530:-1:exon
so has part: feature:5031618-5031828:-1:exon
so has part: feature:5031230-5031330:-1:exon
so has part: feature:5027945-5028295:-1:exon
so has part: feature:5027380-5027619:-1:exon
so has part: feature:5025867-5026742:-1:exon
so has part: feature:5025638-5025735:-1:exon
so has part: feature:5024255-5024482:-1:exon
so has part: feature:5020043-5020224:-1:exon
so has part: feature:5016750-5017224:-1:exon
so has part: feature:5015039-5015256:-1:exon
so has part: feature:5013946-5014089:-1:exon
so has part: feature:5009844-5011339:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5221795-5222028:-1:exon

position:5221795:-1
position: 5221795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5209974-5210106:-1:exon

position:5209974:-1
position: 5209974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5210106:-1
position: 5210106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5081888-5081944:-1:exon

position:5081888:-1
position: 5081888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5081944:-1
position: 5081944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5064158-5064282:-1:exon

position:5064158:-1
position: 5064158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5064282:-1
position: 5064282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5063373-5063475:-1:exon

position:5063373:-1
position: 5063373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5063475:-1
position: 5063475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5056470-5056746:-1:exon

position:5056470:-1
position: 5056470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5056746:-1
position: 5056746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5053134-5053237:-1:exon

position:5053134:-1
position: 5053134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5053237:-1
position: 5053237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5052376-5052544:-1:exon

position:5052376:-1
position: 5052376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5052544:-1
position: 5052544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5051936-5052083:-1:exon

position:5051936:-1
position: 5051936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5052083:-1
position: 5052083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5042614-5042753:-1:exon

position:5042614:-1
position: 5042614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5042753:-1
position: 5042753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5041667-5041772:-1:exon

position:5041667:-1
position: 5041667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5041772:-1
position: 5041772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5038838-5038988:-1:exon

position:5038838:-1
position: 5038838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5038988:-1
position: 5038988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5036769-5036877:-1:exon

position:5036769:-1
position: 5036769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5036877:-1
position: 5036877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5035581-5035800:-1:exon

position:5035581:-1
position: 5035581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5035800:-1
position: 5035800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5035138-5035322:-1:exon

position:5035138:-1
position: 5035138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5035322:-1
position: 5035322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5034939-5035034:-1:exon

position:5034939:-1
position: 5034939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5035034:-1
position: 5035034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5032448-5032530:-1:exon

position:5032448:-1
position: 5032448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5032530:-1
position: 5032530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5031618-5031828:-1:exon

position:5031618:-1
position: 5031618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5031828:-1
position: 5031828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5031230-5031330:-1:exon

position:5031230:-1
position: 5031230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5031330:-1
position: 5031330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5027945-5028295:-1:exon

position:5027945:-1
position: 5027945
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5028295:-1
position: 5028295
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5027380-5027619:-1:exon

position:5027380:-1
position: 5027380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5027619:-1
position: 5027619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5025867-5026742:-1:exon

position:5025867:-1
position: 5025867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5026742:-1
position: 5026742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5025638-5025735:-1:exon

position:5025638:-1
position: 5025638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5025735:-1
position: 5025735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5024255-5024482:-1:exon

position:5024255:-1
position: 5024255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5024482:-1
position: 5024482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5020043-5020224:-1:exon

position:5020043:-1
position: 5020043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5020224:-1
position: 5020224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:5016750-5017224:-1:exon

position:5016750:-1
position: 5016750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5017224:-1
position: 5017224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:5015039-5015256:-1:exon

position:5015039:-1
position: 5015039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5015256:-1
position: 5015256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:5013946-5014089:-1:exon

position:5013946:-1
position: 5013946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5014089:-1
position: 5014089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:5009844-5011339:-1:exon

position:5011339:-1
position: 5011339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TJP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TJP1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: tight junction protein ZO-1
translation: MRRLEGCAAAPARRRRGPARERSGDKMKYQKYLTVLQMAIGVTPSXRGSLLPLKRKLWVTPSSENPNGATSNVSQGKPSLRRIKGRLHRSKSLDSIDFCELTNTAMEETAIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKKVQIPVSRPDPEPASENDEDSYDEDVHDPRSGRGGLVSRRSEKGWARDRSASRERSLSPRSDRRSVASSQPAKPTKVTLVKSRKNEEYGLRLASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGRSHDRPPRHSRSRSPDQRSEPSDHSRHSPQQPSNGSLRSREEERISKPGAVSTPVKHVDDHTAAAADEVLVERSEKQAPALPEPKPVYAQVGQPDVDLPVSPSDGVLPNSTHEDGILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPEIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKADGATSDDLDLHDDRLSYLSAPGSEYSMYSTDSRHTSDYEDTDTEGGAYTDQELDETLNDEAGTPPESAITRSSEPVREDSSGMHHENQTYPPYSPQAQPQPVHRIDSPGFKTASQQKAEASSPGPYLSPETNPASSASAVNHTVNLAHVRLEGPVPAPSASHSAQADPLRAPSTEAAHIMLRAQEPSLSPHVDPAEVYRKDPYPEDMTRQNPVLKAPAVAPPGQRPDREPHLSYEPQGPYVEKQAGRDPEPPTYRYESSSYTEQFPRSYDPRLRYEDRVPAYEEQWAYYDDRQPRQPRPALDGPHPRDLDPRPPPEEPAERGYFPRFEELAPLPYEGRARFEPPSRASALRQEEQPAPGYDGPGRYRPEAQPYPAAAGARAAEPKPYFDQYPRGYEPGPPPGLPSKAGHYEPLHGAAVVPPLVPAPQQKPEAPPANTKPLPPPPVLSEEEEDPAMKPQSVLTRVRMFENRRSASVESKKEEAQPSSFKPPEVASKPPGAPVTGPKATPQSQFSEQDKTLYRIPEPQKPQMKPPEDIVRSNHYDPEEDEEYYRKQLSYFDRRSFESKPSAHTAAGHLPEPAKPVHTQNPPHFPSYSSKGKSPEAEAADRSLGEKRYDPVQAAPPPPPPPAQYGQAYSQHPQPGPPLGLHAHAKGAHGEGNSVSLDFQNSLVPKPDPPPSQNKPAAYRPPNREDGAQSAFYSQKSFPDKAPASGAEQAQKTVTPAYSRFTPKPYTSSARPFERKFESPKFNHNLLPGEAAHKPDLASKAPASPKTVVRAPGSAQLAECDSGVETFSAHADKPRYQMSNSTMPKAVPVSPAAVDEEEDEDGHTVVATARGVFSSNGGVLSSIETGVSIIIPQGAIPDGVEQEIYFKVCRDNSILPPLDKEKGETLLSPLVMCGPHGLKFLKPVELRLPHCASMTPDGWSFALKSSDSSSGDPKTWQNKCLPGDPNYLVGANCVSVLIDHF
SIO_010081: TJP1
subclass of: SO_0000673
so part of: TJP1
location: complement(join(5011245..5011339,5013946..5014089,5015039..5015256,5016750..5017224,5020043..5020224,5024255..5024482,5025638..5025735,5025867..5026742,5027380..5027619,5027945..5028295,5031230..5031330,5031618..5031828,5032448..5032530,5034939..5035034,5035138..5035322,5035581..5035800,5036769..5036877,5038838..5038988,5041667..5041772,5042614..5042753,5051936..5052083,5052376..5052544,5053134..5053237,5056470..5056746,5063373..5063475,5064158..5064282,5081888..5081944,5209974..5210106,5221795..5221966))
location: region:5011245-5221966:-1
so has part: feature:5221795-5221966:-1:exon
so has part: feature:5209974-5210106:-1:exon
so has part: feature:5081888-5081944:-1:exon
so has part: feature:5064158-5064282:-1:exon
so has part: feature:5063373-5063475:-1:exon
so has part: feature:5056470-5056746:-1:exon
so has part: feature:5053134-5053237:-1:exon
so has part: feature:5052376-5052544:-1:exon
so has part: feature:5051936-5052083:-1:exon
so has part: feature:5042614-5042753:-1:exon
so has part: feature:5041667-5041772:-1:exon
so has part: feature:5038838-5038988:-1:exon
so has part: feature:5036769-5036877:-1:exon
so has part: feature:5035581-5035800:-1:exon
so has part: feature:5035138-5035322:-1:exon
so has part: feature:5034939-5035034:-1:exon
so has part: feature:5032448-5032530:-1:exon
so has part: feature:5031618-5031828:-1:exon
so has part: feature:5031230-5031330:-1:exon
so has part: feature:5027945-5028295:-1:exon
so has part: feature:5027380-5027619:-1:exon
so has part: feature:5025867-5026742:-1:exon
so has part: feature:5025638-5025735:-1:exon
so has part: feature:5024255-5024482:-1:exon
so has part: feature:5020043-5020224:-1:exon
so has part: feature:5016750-5017224:-1:exon
so has part: feature:5015039-5015256:-1:exon
so has part: feature:5013946-5014089:-1:exon
so has part: feature:5011245-5011339:-1:exon

XP_031296322.1
type: Protein
SIO_000068: ncbiprotein

position:5011245:-1
position: 5011245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5221966:-1
position: 5221966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5221795-5221966:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5209974-5210106:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5081888-5081944:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5064158-5064282:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5063373-5063475:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5056470-5056746:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5053134-5053237:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5052376-5052544:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5051936-5052083:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5042614-5042753:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5041667-5041772:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5038838-5038988:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5036769-5036877:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5035581-5035800:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5035138-5035322:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5034939-5035034:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5032448-5032530:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5031618-5031828:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5031230-5031330:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5027945-5028295:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5027380-5027619:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5025867-5026742:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5025638-5025735:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5024255-5024482:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5020043-5020224:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5016750-5017224:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5015039-5015256:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5013946-5014089:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5011245-5011339:-1:exon

LOC116149360
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149360
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5085788..5095813
location: region:5085788-5095813:1
so has part: feature:5085788-5095813:1:exon

116149360
type: Gene
SIO_000068: ncbigene

position:5085788:1
position: 5085788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5095813:1
position: 5095813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5085788-5095813:1:exon

LOC116149360
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149360
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149360
subclass of: SO_0000673
so part of: LOC116149360
location: 5085788..5085867
location: region:5085788-5085867:1
so has part: feature:5085788-5085867:1:exon

position:5085867:1
position: 5085867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5085788-5085867:1:exon

LOC116149360
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149360
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149360
subclass of: SO_0000673
so part of: LOC116149360
location: 5086717..5086801
location: region:5086717-5086801:1
so has part: feature:5086717-5086801:1:exon

position:5086717:1
position: 5086717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5086801:1
position: 5086801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5086717-5086801:1:exon

LOC116149360
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC116149360
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC116149360
subclass of: SO_0000673
so part of: LOC116149360
location: 5095470..5095813
location: region:5095470-5095813:1
so has part: feature:5095470-5095813:1:exon

position:5095470:1
position: 5095470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5095470-5095813:1:exon

LOC116149459
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149459
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(5183021..5183122)
location: region:5183021-5183122:-1
so has part: feature:5183021-5183122:-1:exon
subclass of: SO_0000623

116149459
type: Gene
SIO_000068: ncbigene

position:5183021:-1
position: 5183021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5183122:-1
position: 5183122
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5183021-5183122:-1:exon

LOC116149459
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: snRNA
gene: LOC116149459
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_004133071.1
SIO_010081: LOC116149459
subclass of: SO_0000673
so part of: LOC116149459
location: complement(5183021..5183122)
location: region:5183021-5183122:-1
so has part: feature:5183021-5183122:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5183021-5183122:-1:exon

LOC116149313
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149313
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5291649..5296936)
location: region:5291649-5296936:-1
so has part: feature:5291649-5296936:-1:exon
subclass of: SO_0000011

116149313
type: Gene
SIO_000068: ncbigene

position:5291649:-1
position: 5291649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5296936:-1
position: 5296936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5291649-5296936:-1:exon

LOC116149313
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149313
product: uncharacterized LOC116149313
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_004132894.1
SIO_010081: LOC116149313
subclass of: SO_0000673
so part of: LOC116149313
location: complement(join(5291649..5295024,5295896..5295980,5296803..5296936))
location: region:5291649-5296936:-1
so has part: feature:5296803-5296936:-1:exon
so has part: feature:5295896-5295980:-1:exon
so has part: feature:5291649-5295024:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5296803-5296936:-1:exon

position:5296803:-1
position: 5296803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5295896-5295980:-1:exon

position:5295896:-1
position: 5295896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5295980:-1
position: 5295980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5291649-5295024:-1:exon

position:5295024:-1
position: 5295024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TARS3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TARS3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5296455..5335074
location: region:5296455-5335074:1
so has part: feature:5296455-5335074:1:exon
subclass of: SO_0000010

105093460
type: Gene
SIO_000068: ncbigene

position:5296455:1
position: 5296455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5335074:1
position: 5335074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5296455-5335074:1:exon

TARS3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TARS3
product: threonyl-tRNA synthetase 3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_031440463.1
SIO_010081: TARS3
subclass of: SO_0000673
so part of: TARS3
location: join(5296455..5297118,5298071..5298136,5298959..5299155,5301503..5301626,5302831..5302952,5304509..5304626,5307094..5307158,5309495..5309573,5310936..5311082,5312019..5312117,5318513..5318679,5320355..5320517,5323612..5323749,5325726..5325803,5325887..5325987,5329551..5329655,5331255..5331327,5332839..5332953,5334258..5335074)
location: region:5296455-5335074:1
so has part: feature:5296455-5297118:1:exon
so has part: feature:5298071-5298136:1:exon
so has part: feature:5298959-5299155:1:exon
so has part: feature:5301503-5301626:1:exon
so has part: feature:5302831-5302952:1:exon
so has part: feature:5304509-5304626:1:exon
so has part: feature:5307094-5307158:1:exon
so has part: feature:5309495-5309573:1:exon
so has part: feature:5310936-5311082:1:exon
so has part: feature:5312019-5312117:1:exon
so has part: feature:5318513-5318679:1:exon
so has part: feature:5320355-5320517:1:exon
so has part: feature:5323612-5323749:1:exon
so has part: feature:5325726-5325803:1:exon
so has part: feature:5325887-5325987:1:exon
so has part: feature:5329551-5329655:1:exon
so has part: feature:5331255-5331327:1:exon
so has part: feature:5332839-5332953:1:exon
so has part: feature:5334258-5335074:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5296455-5297118:1:exon

position:5297118:1
position: 5297118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5298071-5298136:1:exon

position:5298071:1
position: 5298071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5298136:1
position: 5298136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5298959-5299155:1:exon

position:5298959:1
position: 5298959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5299155:1
position: 5299155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5301503-5301626:1:exon

position:5301503:1
position: 5301503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5301626:1
position: 5301626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5302831-5302952:1:exon

position:5302831:1
position: 5302831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5302952:1
position: 5302952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5304509-5304626:1:exon

position:5304509:1
position: 5304509
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5304626:1
position: 5304626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5307094-5307158:1:exon

position:5307094:1
position: 5307094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5307158:1
position: 5307158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5309495-5309573:1:exon

position:5309495:1
position: 5309495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5309573:1
position: 5309573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5310936-5311082:1:exon

position:5310936:1
position: 5310936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5311082:1
position: 5311082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5312019-5312117:1:exon

position:5312019:1
position: 5312019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5312117:1
position: 5312117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5318513-5318679:1:exon

position:5318513:1
position: 5318513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5318679:1
position: 5318679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5320355-5320517:1:exon

position:5320355:1
position: 5320355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5320517:1
position: 5320517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5323612-5323749:1:exon

position:5323612:1
position: 5323612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5323749:1
position: 5323749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5325726-5325803:1:exon

position:5325726:1
position: 5325726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5325803:1
position: 5325803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5325887-5325987:1:exon

position:5325887:1
position: 5325887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5325987:1
position: 5325987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5329551-5329655:1:exon

position:5329551:1
position: 5329551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5329655:1
position: 5329655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5331255-5331327:1:exon

position:5331255:1
position: 5331255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5331327:1
position: 5331327
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5332839-5332953:1:exon

position:5332839:1
position: 5332839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5332953:1
position: 5332953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5334258-5335074:1:exon

position:5334258:1
position: 5334258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TARS3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TARS3
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: threonine--tRNA ligase 2, cytoplasmic
translation: MAAEPWRRRPWLRPGAQEEDIRWLWAEVHRLKDEQLNAPDRCQAEGPCLTREXAQLRAENRELRHRLYRLRLCLAEELSHQARMESAAXGEAGRAAAGAQPPPSQSQEKDIKKEKESEPYSELKNQPDFVKERLKLFEILKKEHQLLLAIYDKKGDTSNVITVRVADGKTVEGEAWKTTPYDVAAEISQELAEDTVVAKVNGELWDLDRPLEGDSTLELLLFDNEEAQAVYWHSSAHVLGEAMELYYGGHLGYGPPIEAGFYYDMFLEDRAVSSEELSALENLCKAIIQEKQPFERLEVSKDVLLDMFKYNKFKCCILNEKVNTPTTTVYRCGPLIDLCKGPHIRHTGKIKAIKIFKHSSTYWEGNPAMEALQRVYGISFPDNKMMTAWETLQEEARNRDHRNIGKEQELFFFHDLSPGSCFFLPKGAFIYNTLMEFIREEYHQRNFTEVLSPNIYNSKLWEASGHWQHYIENMFTFGIEKDTFALKPINCPGHCLMFAHRPRSWREMPIRYADFGVLHRNELSGTLSGLTHVRRFQQDDAHIFCTVEQIEEEIKGCLQFLQSVYSTFGFSFQLTLSTRPENFLGEVEIWDEAEKQLQNSLMEFGKPWKMNPGDGAFYGPKIDVKIKDAIGRSHQCATIQLDFQLPKRFNLTYVSKDGHDKKNPVIIHRAILGSLERMIAILSENYGGKWPFWLSPRQVMVIPVEPTCENYALQVSSEFFAEGFMADVDLDHSCTLDKKIRNAQLAQYNFILVVGEKEKANNAVNVRTRDNKIHGEISVASAMDRLKNLKTSRTLNAEEEF
SIO_010081: TARS3
subclass of: SO_0000673
so part of: TARS3
location: join(5296821..5297118,5298071..5298136,5298959..5299155,5301503..5301626,5302831..5302952,5304509..5304626,5307094..5307158,5309495..5309573,5310936..5311082,5312019..5312117,5318513..5318679,5320355..5320517,5323612..5323749,5325726..5325803,5325887..5325987,5329551..5329655,5331255..5331327,5332839..5332953,5334258..5334406)
location: region:5296821-5334406:1
so has part: feature:5296821-5297118:1:exon
so has part: feature:5298071-5298136:1:exon
so has part: feature:5298959-5299155:1:exon
so has part: feature:5301503-5301626:1:exon
so has part: feature:5302831-5302952:1:exon
so has part: feature:5304509-5304626:1:exon
so has part: feature:5307094-5307158:1:exon
so has part: feature:5309495-5309573:1:exon
so has part: feature:5310936-5311082:1:exon
so has part: feature:5312019-5312117:1:exon
so has part: feature:5318513-5318679:1:exon
so has part: feature:5320355-5320517:1:exon
so has part: feature:5323612-5323749:1:exon
so has part: feature:5325726-5325803:1:exon
so has part: feature:5325887-5325987:1:exon
so has part: feature:5329551-5329655:1:exon
so has part: feature:5331255-5331327:1:exon
so has part: feature:5332839-5332953:1:exon
so has part: feature:5334258-5334406:1:exon

XP_031296323.1
type: Protein
SIO_000068: ncbiprotein

position:5296821:1
position: 5296821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5334406:1
position: 5334406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5296821-5297118:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5298071-5298136:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5298959-5299155:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5301503-5301626:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5302831-5302952:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5304509-5304626:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5307094-5307158:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5309495-5309573:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5310936-5311082:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5312019-5312117:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5318513-5318679:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5320355-5320517:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5323612-5323749:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5325726-5325803:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5325887-5325987:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5329551-5329655:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5331255-5331327:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5332839-5332953:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5334258-5334406:1:exon

TM2D3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TM2D3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5337029..5347542
location: region:5337029-5347542:1
so has part: feature:5337029-5347542:1:exon
subclass of: SO_0000010

105093459
type: Gene
SIO_000068: ncbigene

position:5337029:1
position: 5337029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5347542:1
position: 5347542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5337029-5347542:1:exon

TM2D3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: TM2D3
product: TM2 domain containing 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_031440464.1
SIO_010081: TM2D3
subclass of: SO_0000673
so part of: TM2D3
location: join(5337029..5337187,5337403..5337495,5339256..5339413,5343849..5344023,5344711..5344786,5346747..5347542)
location: region:5337029-5347542:1
so has part: feature:5337029-5337187:1:exon
so has part: feature:5337403-5337495:1:exon
so has part: feature:5339256-5339413:1:exon
so has part: feature:5343849-5344023:1:exon
so has part: feature:5344711-5344786:1:exon
so has part: feature:5346747-5347542:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5337029-5337187:1:exon

position:5337187:1
position: 5337187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5337403-5337495:1:exon

position:5337403:1
position: 5337403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5337495:1
position: 5337495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5339256-5339413:1:exon

position:5339256:1
position: 5339256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5339413:1
position: 5339413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5343849-5344023:1:exon

position:5343849:1
position: 5343849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5344023:1
position: 5344023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5344711-5344786:1:exon

position:5344711:1
position: 5344711
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5344786:1
position: 5344786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5346747-5347542:1:exon

position:5346747:1
position: 5346747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TM2D3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: TM2D3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: TM2 domain-containing protein 3
translation: MRAGKMAAAAVQLWGLLRPCRALLFLSQFYILSGGGALDVERSQPPAPAGKDPGPTRAFTVVPGAAESTDIPPYVMKCPSNGLCSRLPADCIECKTNFSCVYGKPVTFDCTVKPSVTCVDQDFKPQKSFVLNMTCRFCWQLPEADYECSSSTSCMTVSCPRQRFAANCTVRDHVHCLGNRTFPKMLYCNWTGGYKWSTALALSITLGGFGADRFYLGQWREGLGKLFSFGGLGVWTLIDVLLIGVGYVGPADGSLYI
SIO_010081: TM2D3
subclass of: SO_0000673
so part of: TM2D3
location: join(5337082..5337187,5337403..5337495,5339256..5339413,5343849..5344023,5344711..5344786,5346747..5346912)
location: region:5337082-5346912:1
so has part: feature:5337082-5337187:1:exon
so has part: feature:5337403-5337495:1:exon
so has part: feature:5339256-5339413:1:exon
so has part: feature:5343849-5344023:1:exon
so has part: feature:5344711-5344786:1:exon
so has part: feature:5346747-5346912:1:exon

XP_031296324.1
type: Protein
SIO_000068: ncbiprotein

position:5337082:1
position: 5337082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5346912:1
position: 5346912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5337082-5337187:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5337403-5337495:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5339256-5339413:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5343849-5344023:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5344711-5344786:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5346747-5346912:1:exon

PCSK6
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: PCSK6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <5426347..5614024
location: region:5426347-5614024:1
so has part: feature:5426347-5614024:1:exon
subclass of: SO_0000010

105093478
type: Gene
SIO_000068: ncbigene

position:5426347:1
position: 5426347
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5614024:1
position: 5614024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5426347-5614024:1:exon

PCSK6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: PCSK6
product: proprotein convertase subtilisin/kexin type 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031440921.1
SIO_010081: PCSK6
subclass of: SO_0000673
so part of: PCSK6
location: join(<5426347..5426376,5484301..5484405,5496984..5497094,5497593..5497736,5499147..5499223,5502068..5502156,5544292..5544464,5550189..5550401,5553622..5553722,5556712..5556815,5558446..5558563,5569617..5569805,5572513..5572649,5591818..5591997,5592162..5592200,5597244..5597346,5598636..5598832,5600464..5600551,5603356..5603459,5607759..5607888,5610591..5610703,5612595..5614024)
location: region:5426347-5614024:1
so has part: feature:5426347-5426376:1:exon
so has part: feature:5484301-5484405:1:exon
so has part: feature:5496984-5497094:1:exon
so has part: feature:5497593-5497736:1:exon
so has part: feature:5499147-5499223:1:exon
so has part: feature:5502068-5502156:1:exon
so has part: feature:5544292-5544464:1:exon
so has part: feature:5550189-5550401:1:exon
so has part: feature:5553622-5553722:1:exon
so has part: feature:5556712-5556815:1:exon
so has part: feature:5558446-5558563:1:exon
so has part: feature:5569617-5569805:1:exon
so has part: feature:5572513-5572649:1:exon
so has part: feature:5591818-5591997:1:exon
so has part: feature:5592162-5592200:1:exon
so has part: feature:5597244-5597346:1:exon
so has part: feature:5598636-5598832:1:exon
so has part: feature:5600464-5600551:1:exon
so has part: feature:5603356-5603459:1:exon
so has part: feature:5607759-5607888:1:exon
so has part: feature:5610591-5610703:1:exon
so has part: feature:5612595-5614024:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5426347-5426376:1:exon

position:5426376:1
position: 5426376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5484301-5484405:1:exon

position:5484301:1
position: 5484301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5484405:1
position: 5484405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5496984-5497094:1:exon

position:5496984:1
position: 5496984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5497094:1
position: 5497094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5497593-5497736:1:exon

position:5497593:1
position: 5497593
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5497736:1
position: 5497736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5499147-5499223:1:exon

position:5499147:1
position: 5499147
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5499223:1
position: 5499223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5502068-5502156:1:exon

position:5502068:1
position: 5502068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5502156:1
position: 5502156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5544292-5544464:1:exon

position:5544292:1
position: 5544292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5544464:1
position: 5544464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5550189-5550401:1:exon

position:5550189:1
position: 5550189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5550401:1
position: 5550401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5553622-5553722:1:exon

position:5553622:1
position: 5553622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5553722:1
position: 5553722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5556712-5556815:1:exon

position:5556712:1
position: 5556712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5556815:1
position: 5556815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5558446-5558563:1:exon

position:5558446:1
position: 5558446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5558563:1
position: 5558563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5569617-5569805:1:exon

position:5569617:1
position: 5569617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5569805:1
position: 5569805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5572513-5572649:1:exon

position:5572513:1
position: 5572513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5572649:1
position: 5572649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5591818-5591997:1:exon

position:5591818:1
position: 5591818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5591997:1
position: 5591997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5592162-5592200:1:exon

position:5592162:1
position: 5592162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5592200:1
position: 5592200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5597244-5597346:1:exon

position:5597244:1
position: 5597244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5597346:1
position: 5597346
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5598636-5598832:1:exon

position:5598636:1
position: 5598636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5598832:1
position: 5598832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5600464-5600551:1:exon

position:5600464:1
position: 5600464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5600551:1
position: 5600551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5603356-5603459:1:exon

position:5603356:1
position: 5603356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5603459:1
position: 5603459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5607759-5607888:1:exon

position:5607759:1
position: 5607759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5607888:1
position: 5607888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5610591-5610703:1:exon

position:5610591:1
position: 5610591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5610703:1
position: 5610703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5612595-5614024:1:exon

position:5612595:1
position: 5612595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCSK6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: PCSK6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proprotein convertase subtilisin/kexin type 6
translation: TSLQISRAHQIGNLEDYYHFYHSKTFKRSTLGSRGPHTFLRMDPQVKWLQQQEVKRRVKRQVRSDPQALYFNDPIWSNMWYMHCGDKNSRCRSEMNVQAAWKRGYTGKNVVVTILDDGIERNHPDLAPNYDSYASYDVNGNDYDPSPRYDASNENKHGTRCAGEVAASANNSYCIVGVAYNAKIGGVRMLDGDVTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLARQAFEYGIKKGRQGLGSIFVWASGNGGREGDYCSCDGYTNSIYTISVSSTTENGYKPWYLEECASTLATTYSSGAFYERKIVTTDLRQRCTDGHTGTSVSAPMVAGIIALALEANSQLTWRDVQHLLVKTSRPAHLKANDWKVNGAGHKVSHLYGFGLVDAEALVLEAKKWTAVPSQHMCVAVTDKRPRSIPVVQTLRTTALTTACADHSDQRVSYLEHVVARVSISHPRRGDLQIHLISPSGTKSQLLAKRLLDHSNEGFTNWEFMSVHCWGEKAEGEWTLEIQDMPSQVRNPEKQGKLKEWSLVLYGTAEHPYNTFSSHQSRSRMLELSAPELEPPKAALSPSQPDILEDDEDYTAPPTHGSPNILQTSVCHPECGNKGCDGPNADQCLNCVHFSLGSIKTSRKCVSVCPLGYFGDTAARRCRRCHRGCETCSGRSPTQCLSCRRGFYHHQETNTCVTLCPAGFYADESQKNCLKCHPSCKKCVDEPERCTVCKEGFSLARGSCIPDCEPGTYFDSEQIRCGACHPTCQTCVGPSREECIHCATNFHFQDWRCVPACGEGFYPEEMPGLPHKVCRRCDENCLSCEGSRRNCSRCKVGFMQLGTSCITNHTCSNADETFCQMVRSNGLCERKLFLQFCCRTCLLAG
SIO_010081: PCSK6
subclass of: SO_0000673
so part of: PCSK6
location: join(<5426347..5426376,5484301..5484405,5496984..5497094,5497593..5497736,5499147..5499223,5502068..5502156,5544292..5544464,5550189..5550401,5553622..5553722,5556712..5556815,5558446..5558563,5569617..5569805,5572513..5572649,5591818..5591997,5592162..5592200,5597244..5597346,5598636..5598832,5600464..5600551,5603356..5603459,5607759..5607888,5610591..5610703,5612595..5612692)
location: region:5426347-5612692:1
so has part: feature:5426347-5426376:1:exon
so has part: feature:5484301-5484405:1:exon
so has part: feature:5496984-5497094:1:exon
so has part: feature:5497593-5497736:1:exon
so has part: feature:5499147-5499223:1:exon
so has part: feature:5502068-5502156:1:exon
so has part: feature:5544292-5544464:1:exon
so has part: feature:5550189-5550401:1:exon
so has part: feature:5553622-5553722:1:exon
so has part: feature:5556712-5556815:1:exon
so has part: feature:5558446-5558563:1:exon
so has part: feature:5569617-5569805:1:exon
so has part: feature:5572513-5572649:1:exon
so has part: feature:5591818-5591997:1:exon
so has part: feature:5592162-5592200:1:exon
so has part: feature:5597244-5597346:1:exon
so has part: feature:5598636-5598832:1:exon
so has part: feature:5600464-5600551:1:exon
so has part: feature:5603356-5603459:1:exon
so has part: feature:5607759-5607888:1:exon
so has part: feature:5610591-5610703:1:exon
so has part: feature:5612595-5612692:1:exon

XP_031296781.1
type: Protein
SIO_000068: ncbiprotein

position:5612692:1
position: 5612692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5426347-5426376:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5484301-5484405:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5496984-5497094:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5497593-5497736:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5499147-5499223:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5502068-5502156:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5544292-5544464:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5550189-5550401:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5553622-5553722:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5556712-5556815:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5558446-5558563:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5569617-5569805:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5572513-5572649:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5591818-5591997:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5592162-5592200:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5597244-5597346:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5598636-5598832:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5600464-5600551:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5603356-5603459:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5607759-5607888:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5610591-5610703:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5612595-5612692:1:exon

TRNAD-AUC
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: TRNAD-AUC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 5589270..5589341
location: region:5589270-5589341:1
so has part: feature:5589270-5589341:1:exon
subclass of: SO_0000663

116149462
type: Gene
SIO_000068: ncbigene

position:5589270:1
position: 5589270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5589341:1
position: 5589341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5589270-5589341:1:exon

TRNAD-AUC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9838
gene: TRNAD-AUC
product: tRNA-Asp
inference: COORDINATES: profile:tRNAscan-SE:1.23
note: transfer RNA aspartic acid (anticodon AUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:5589302..5589304,aa:Asp,seq:atc)
SIO_010081: TRNAD-AUC
subclass of: SO_0000673
so part of: TRNAD-AUC
location: 5589270..5589341
location: region:5589270-5589341:1
so has part: feature:5589270-5589341:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5589270-5589341:1:exon

SNRPA1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SNRPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5621790..5635166
location: region:5621790-5635166:1
so has part: feature:5621790-5635166:1:exon
subclass of: SO_0000010

105093458
type: Gene
SIO_000068: ncbigene

position:5621790:1
position: 5621790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5635166:1
position: 5635166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5621790-5635166:1:exon

SNRPA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SNRPA1
product: small nuclear ribonucleoprotein polypeptide A'
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_031440465.1
SIO_010081: SNRPA1
subclass of: SO_0000673
so part of: SNRPA1
location: join(5621790..5621954,5623511..5623658,5624645..5624723,5629380..5629426,5629720..5629822,5630425..5630504,5630904..5630979,5631840..5631933,5634891..5635166)
location: region:5621790-5635166:1
so has part: feature:5621790-5621954:1:exon
so has part: feature:5623511-5623658:1:exon
so has part: feature:5624645-5624723:1:exon
so has part: feature:5629380-5629426:1:exon
so has part: feature:5629720-5629822:1:exon
so has part: feature:5630425-5630504:1:exon
so has part: feature:5630904-5630979:1:exon
so has part: feature:5631840-5631933:1:exon
so has part: feature:5634891-5635166:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5621790-5621954:1:exon

position:5621954:1
position: 5621954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5623511-5623658:1:exon

position:5623511:1
position: 5623511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5623658:1
position: 5623658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5624645-5624723:1:exon

position:5624645:1
position: 5624645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5624723:1
position: 5624723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5629380-5629426:1:exon

position:5629380:1
position: 5629380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5629426:1
position: 5629426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5629720-5629822:1:exon

position:5629720:1
position: 5629720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5629822:1
position: 5629822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5630425-5630504:1:exon

position:5630425:1
position: 5630425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5630504:1
position: 5630504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5630904-5630979:1:exon

position:5630904:1
position: 5630904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5630979:1
position: 5630979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5631840-5631933:1:exon

position:5631840:1
position: 5631840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5631933:1
position: 5631933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5634891-5635166:1:exon

position:5634891:1
position: 5634891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SNRPA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SNRPA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: U2 small nuclear ribonucleoprotein A'
translation: MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKTFNPGAGLPTDKKKGGPSPGDVEAIKSAIANASTLAEVERLKGLLQSGQIPGRERRAGPTDDGEEEMEEDTVTNGS
SIO_010081: SNRPA1
subclass of: SO_0000673
so part of: SNRPA1
location: join(5621873..5621954,5623511..5623658,5624645..5624723,5629380..5629426,5629720..5629822,5630425..5630504,5630904..5630979,5631840..5631933,5634891..5634949)
location: region:5621873-5634949:1
so has part: feature:5621873-5621954:1:exon
so has part: feature:5623511-5623658:1:exon
so has part: feature:5624645-5624723:1:exon
so has part: feature:5629380-5629426:1:exon
so has part: feature:5629720-5629822:1:exon
so has part: feature:5630425-5630504:1:exon
so has part: feature:5630904-5630979:1:exon
so has part: feature:5631840-5631933:1:exon
so has part: feature:5634891-5634949:1:exon

XP_031296325.1
type: Protein
SIO_000068: ncbiprotein

position:5621873:1
position: 5621873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5634949:1
position: 5634949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5621873-5621954:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5623511-5623658:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5624645-5624723:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5629380-5629426:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5629720-5629822:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5630425-5630504:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5630904-5630979:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5631840-5631933:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5634891-5634949:1:exon

SELENOS
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: SELENOS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5640495..5647002
location: region:5640495-5647002:1
so has part: feature:5640495-5647002:1:exon
subclass of: SO_0000010

105093457
type: Gene
SIO_000068: ncbigene

position:5640495:1
position: 5640495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5647002:1
position: 5647002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5640495-5647002:1:exon

SELENOS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: SELENOS
product: selenoprotein S
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
transcript id: XM_031440466.1
SIO_010081: SELENOS
subclass of: SO_0000673
so part of: SELENOS
location: join(5640495..5640756,5641276..5641410,5643794..5643900,5644513..5644602,5644704..5644782,5646420..5647002)
location: region:5640495-5647002:1
so has part: feature:5640495-5640756:1:exon
so has part: feature:5641276-5641410:1:exon
so has part: feature:5643794-5643900:1:exon
so has part: feature:5644513-5644602:1:exon
so has part: feature:5644704-5644782:1:exon
so has part: feature:5646420-5647002:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5640495-5640756:1:exon

position:5640756:1
position: 5640756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5641276-5641410:1:exon

position:5641276:1
position: 5641276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5641410:1
position: 5641410
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5643794-5643900:1:exon

position:5643794:1
position: 5643794
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5643900:1
position: 5643900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5644513-5644602:1:exon

position:5644513:1
position: 5644513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5644602:1
position: 5644602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5644704-5644782:1:exon

position:5644704:1
position: 5644704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5644782:1
position: 5644782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5646420-5647002:1:exon

position:5646420:1
position: 5646420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SELENOS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: SELENOS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: selenoprotein S
translation: MEADGDELSARPALETEGLRFLHVTVGSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAVEPDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQLEEEKRRQKIEMWDSMQEGKSYKGNARKPQEEDSPGPSASSVIPKRKSDRKPLRGGGYNPLSGEGGGACSWRPGRRGPSAGG
SIO_010081: SELENOS
subclass of: SO_0000673
so part of: SELENOS
location: join(5640681..5640756,5641276..5641410,5643794..5643900,5644513..5644602,5644704..5644782,5646420..5646499)
location: region:5640681-5646499:1
so has part: feature:5640681-5640756:1:exon
so has part: feature:5641276-5641410:1:exon
so has part: feature:5643794-5643900:1:exon
so has part: feature:5644513-5644602:1:exon
so has part: feature:5644704-5644782:1:exon
so has part: feature:5646420-5646499:1:exon

XP_031296326.1
type: Protein
SIO_000068: ncbiprotein

position:5640681:1
position: 5640681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5646499:1
position: 5646499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5640681-5640756:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5641276-5641410:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5643794-5643900:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5644513-5644602:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5644704-5644782:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5646420-5646499:1:exon

CHSY1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CHSY1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5661731..5723040
location: region:5661731-5723040:1
so has part: feature:5661731-5723040:1:exon
subclass of: SO_0000010

105093456
type: Gene
SIO_000068: ncbigene

position:5661731:1
position: 5661731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5723040:1
position: 5723040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5661731-5723040:1:exon

CHSY1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CHSY1
product: chondroitin sulfate synthase 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440922.1
SIO_010081: CHSY1
subclass of: SO_0000673
so part of: CHSY1
location: join(5661731..5661902,5662118..5662898,5677364..5677859,5720024..5723040)
location: region:5661731-5723040:1
so has part: feature:5661731-5661902:1:exon
so has part: feature:5662118-5662898:1:exon
so has part: feature:5677364-5677859:1:exon
so has part: feature:5720024-5723040:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5661731-5661902:1:exon

position:5661902:1
position: 5661902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5662118-5662898:1:exon

position:5662118:1
position: 5662118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5662898:1
position: 5662898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5677364-5677859:1:exon

position:5677364:1
position: 5677364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5677859:1
position: 5677859
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5720024-5723040:1:exon

position:5720024:1
position: 5720024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CHSY1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CHSY1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: chondroitin sulfate synthase 1
translation: MPLGRVLGAAAGRPNAGQRGRGRRADNGLLGAAVRAPAGAEPAPHAPPPRRPAADRAAGGWCSSAAARGHEDDGAGRSASGASQPGDAAGGTRARAPLPLPSPSRWPCAPAREQEEPPRRLAPEPPPALAGHGPLLKAQAAAVGVGVRNKAPARGLRGGSGAGWGGGPRRPRRCRAEPRGARAGCLRGRGGGLKARGLRRRRRPRAERRGHGPARGRRAWLSVLLGLVLGFVLASRLVLPRASELKRVGPXRRASPEGCRPGRRLGFPXAGGARGDARGTQLWPHGPALDGSARDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVEFFSSEGSDTSIPIPVVPLRGVDDSYPPQKKSFMMLKYMHDHYLDKYEWFMRADDDVYIKGDRLENFLRSLNSSEPLFLGQTGLGTTEEMGKLALEPGENFCMGGPGVIMSREVLRRMVPHIGKCLREMYTTHEDVEVGRCVRRFAGVQCVWSYEMQQLFYENYEQNKKGYIRDLHNSKIHRAITLHPNKSPPYQYRLHSYVLSRRVAELRHRTIQLHREVVLMSKYSSSEIHKEDLQLGIPPSFTRFQPRQREEILEWEFLTGKYLYSATDGQPPRRGMDSAQREALDDIVMQVMEMINANAKTRGRIIDFKEIQYGYRRVNPMYGAEYILDLLLLYKKHKGKKMTVPVRRHAYLQQTFSKIQFVEHEELDAKDLANKINQESGSLSFLSNSLKKLVPFQLPGSKSEHKEPKEKKINILIPLSGRFDMFVRFMGNFEKTCLIPNQNVKLVVLLFNSDSNPDKAKQVELMRDYRVKYPKADMQILPVSGEFSRALALEVGSSQFNNESLLFFCDVDLVFTTDFLQRCRANTVLGQQIYFPIIFSQYDPKIVYSGKSPSDNHFAFTQKTGFWRNYGFGITCIYKGDLVRVGGFDVSIQGWGLEDVDLFNKVVQAGLKTFRSQEVGVVHIHHPVFCDPNLDPKQYKMCLGSKASTYGSTQQLAEMWLEKNDPSYSKSSNNNGSVRTA
SIO_010081: CHSY1
subclass of: SO_0000673
so part of: CHSY1
location: join(5661731..5661902,5662118..5662898,5677364..5677859,5720024..5721616)
location: region:5661731-5721616:1
so has part: feature:5661731-5661902:1:exon
so has part: feature:5662118-5662898:1:exon
so has part: feature:5677364-5677859:1:exon
so has part: feature:5720024-5721616:1:exon

XP_031296782.1
type: Protein
SIO_000068: ncbiprotein

position:5721616:1
position: 5721616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5661731-5661902:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5662118-5662898:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5677364-5677859:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5720024-5721616:1:exon

LRRK1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LRRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5806149..5924351)
location: region:5806149-5924351:-1
so has part: feature:5806149-5924351:-1:exon
subclass of: SO_0000010

105093454
type: Gene
SIO_000068: ncbigene

position:5806149:-1
position: 5806149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5924351:-1
position: 5924351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5806149-5924351:-1:exon

LRRK1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LRRK1
product: leucine rich repeat kinase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_010985335.2
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(5806149..5807571,5809170..5809271,5809648..5810498,5812869..5812985,5814091..5814208,5818583..5818734,5819482..5819676,5821006..5821283,5822425..5822622,5824754..5824920,5827463..5827712,5829532..5829671,5830635..5830798,5833245..5833416,5836596..5836872,5837286..5837445,5837716..5837836,5838875..5839047,5839727..5839891,5842023..5842237,5842652..5842764,5843387..5843516,5849427..5849503,5850569..5850681,5852349..5852486,5853332..5853495,5853598..5853725,5854380..5854606,5871152..5871300,5871719..5871898,5874173..5874344,5883850..5884013,5919159..5919413,5924209..5924351))
location: region:5806149-5924351:-1
so has part: feature:5924209-5924351:-1:exon
so has part: feature:5919159-5919413:-1:exon
so has part: feature:5883850-5884013:-1:exon
so has part: feature:5874173-5874344:-1:exon
so has part: feature:5871719-5871898:-1:exon
so has part: feature:5871152-5871300:-1:exon
so has part: feature:5854380-5854606:-1:exon
so has part: feature:5853598-5853725:-1:exon
so has part: feature:5853332-5853495:-1:exon
so has part: feature:5852349-5852486:-1:exon
so has part: feature:5850569-5850681:-1:exon
so has part: feature:5849427-5849503:-1:exon
so has part: feature:5843387-5843516:-1:exon
so has part: feature:5842652-5842764:-1:exon
so has part: feature:5842023-5842237:-1:exon
so has part: feature:5839727-5839891:-1:exon
so has part: feature:5838875-5839047:-1:exon
so has part: feature:5837716-5837836:-1:exon
so has part: feature:5837286-5837445:-1:exon
so has part: feature:5836596-5836872:-1:exon
so has part: feature:5833245-5833416:-1:exon
so has part: feature:5830635-5830798:-1:exon
so has part: feature:5829532-5829671:-1:exon
so has part: feature:5827463-5827712:-1:exon
so has part: feature:5824754-5824920:-1:exon
so has part: feature:5822425-5822622:-1:exon
so has part: feature:5821006-5821283:-1:exon
so has part: feature:5819482-5819676:-1:exon
so has part: feature:5818583-5818734:-1:exon
so has part: feature:5814091-5814208:-1:exon
so has part: feature:5812869-5812985:-1:exon
so has part: feature:5809648-5810498:-1:exon
so has part: feature:5809170-5809271:-1:exon
so has part: feature:5806149-5807571:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5924209-5924351:-1:exon

position:5924209:-1
position: 5924209
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5919159-5919413:-1:exon

position:5919159:-1
position: 5919159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5919413:-1
position: 5919413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5883850-5884013:-1:exon

position:5883850:-1
position: 5883850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5884013:-1
position: 5884013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5874173-5874344:-1:exon

position:5874173:-1
position: 5874173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5874344:-1
position: 5874344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5871719-5871898:-1:exon

position:5871719:-1
position: 5871719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5871898:-1
position: 5871898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5871152-5871300:-1:exon

position:5871152:-1
position: 5871152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5871300:-1
position: 5871300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5854380-5854606:-1:exon

position:5854380:-1
position: 5854380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5854606:-1
position: 5854606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5853598-5853725:-1:exon

position:5853598:-1
position: 5853598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5853725:-1
position: 5853725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5853332-5853495:-1:exon

position:5853332:-1
position: 5853332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5853495:-1
position: 5853495
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5852349-5852486:-1:exon

position:5852349:-1
position: 5852349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5852486:-1
position: 5852486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5850569-5850681:-1:exon

position:5850569:-1
position: 5850569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5850681:-1
position: 5850681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5849427-5849503:-1:exon

position:5849427:-1
position: 5849427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5849503:-1
position: 5849503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5843387-5843516:-1:exon

position:5843387:-1
position: 5843387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5843516:-1
position: 5843516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5842652-5842764:-1:exon

position:5842652:-1
position: 5842652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5842764:-1
position: 5842764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5842023-5842237:-1:exon

position:5842023:-1
position: 5842023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5842237:-1
position: 5842237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5839727-5839891:-1:exon

position:5839727:-1
position: 5839727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5839891:-1
position: 5839891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5838875-5839047:-1:exon

position:5838875:-1
position: 5838875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5839047:-1
position: 5839047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5837716-5837836:-1:exon

position:5837716:-1
position: 5837716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5837836:-1
position: 5837836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5837286-5837445:-1:exon

position:5837286:-1
position: 5837286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5837445:-1
position: 5837445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5836596-5836872:-1:exon

position:5836596:-1
position: 5836596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5836872:-1
position: 5836872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5833245-5833416:-1:exon

position:5833245:-1
position: 5833245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5833416:-1
position: 5833416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5830635-5830798:-1:exon

position:5830635:-1
position: 5830635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5830798:-1
position: 5830798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5829532-5829671:-1:exon

position:5829532:-1
position: 5829532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5829671:-1
position: 5829671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5827463-5827712:-1:exon

position:5827463:-1
position: 5827463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5827712:-1
position: 5827712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5824754-5824920:-1:exon

position:5824754:-1
position: 5824754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5824920:-1
position: 5824920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:5822425-5822622:-1:exon

position:5822425:-1
position: 5822425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5822622:-1
position: 5822622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:5821006-5821283:-1:exon

position:5821006:-1
position: 5821006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5821283:-1
position: 5821283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:5819482-5819676:-1:exon

position:5819482:-1
position: 5819482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5819676:-1
position: 5819676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:5818583-5818734:-1:exon

position:5818583:-1
position: 5818583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5818734:-1
position: 5818734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:5814091-5814208:-1:exon

position:5814091:-1
position: 5814091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5814208:-1
position: 5814208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:5812869-5812985:-1:exon

position:5812869:-1
position: 5812869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5812985:-1
position: 5812985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:5809648-5810498:-1:exon

position:5809648:-1
position: 5809648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5810498:-1
position: 5810498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:5809170-5809271:-1:exon

position:5809170:-1
position: 5809170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5809271:-1
position: 5809271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:5806149-5807571:-1:exon

position:5807571:-1
position: 5807571
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRK1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LRRK1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat serine/threonine-protein kinase 1
translation: MAGMSRRPPSMYWCVGPEGSAVCPGRAMETHSNGARDMGGKLSMPGGAPPAQSPGTEGIHAAYKRGDPSRARHLLIEACDESMSQLEKGQLLSISAAYGDLETVRYLLTQRLVELPTEPTDDNPAVVAAQFGHTDVVQELLESLSGPCSHQRLLNWMLALACQRGHLALVKLLVLTHGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLLRHGAFFCSYILLDSPDPSKHLLRKYFIEASALPSSCPGKMALRVNWSHLKLPWVDLDWLIDISCQITELDLSANCLASLPSVIPWGLINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTAAKNYLEKLFEEENATNWIGLRKLQELDISDNKLTELPAIFLHSFKSLSCLNVSRNNLKVFPDAWACPLKCCKASKNALESLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLKLQGNQLVTLPPQEKWTCRQLKTLDLSRNQLGRNEDGLKTKRISFFTTRGRQRSGTETACMLEFPAFLSESLEVLCLNDNHLDAVPPSVCLLKSLSELYLGNNPGLRELPPELGRLSNLWQLDIEELSISNVPAEIRKEGPKAVLSYLRAQLRKAEKCKLMKMIIVGPPRQGKSTLLEILQTGRAPQVVHGEATIRTTKWELQRPAGSRAKVESVEFNVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEAVANLQFWLLNIEAKAPNAVVLVVGTHLDLIEAKFRVERIATLRAYVLALCRSPSGSRATGFPDITFKHLHELSCKSLEGQEGLRQLIFHVTCNMKDVGSTIGCQRLAGRLIPRSYLSLQEAVLAEQQRRSLSDDVQYLTDRQLEQLVEQMPGNDIKDYEDLQSAISFLIETGTLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIKAEDLRMLLVGTGFTKQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKPGLDTHGMRHPAANTIQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLFENKKNTKSRHRKVAIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGIKIICQSEMRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCETSWAQHAGPSERPEHVQYFDMEDCVLTAIERDFISCPRHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDESAILGQGGSGTVIYRARYQGQPVAVKRFQIKKFKNFANAPADTMLRHLRATDAMRNFSEFRQEASMLHALQHPCIVSLIGISIHPLCFALELAPLGSLNTVLSENAKDSSFMPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDVKDHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGVRPVLGQPEEVQFHRLQALMMECWDTKPEKRPLALAVVSQMKDPTFATFMYQLPCGKQTAFFSSQGQEYMVIFWDGKEESRNYTVVNTEKGLLEVQRMSCAGMKLSCQLKIQSSLWTATEDQKIYIYNLKGMCPLNTPQRALDTPAIVTCFLAVPVIKKNSYLVLAGLADGLVAMFPVVRGAPDNSCSYLCSHTANRSKFSIPDEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVIDCAALEISRRLEPYSAPSVVTSVVCSSECRGEEVVWCLDDRANCLVMYHSATYQLCARYFCGDPSPLRDVFPVFLTGSEPLDSPVICLPEPEKNCIADVSIMYSEELGTQILTHQDSLTDYCSMSSYSSSPPRQAPPSLSSLPCSPASSSSVPFSTDCEDSGRLIEPTAGSDRSEHDLSPVDGEAFSQHLQAVKILAVKDVIWVPRRGGDVIVIGLEKDAGAQRGRVIAVLKARELTPRGVLVDAAVVAKDTVVCGFENENMEWCLAVWRGWGTQEFDVFYQS…
SIO_010081: LRRK1
subclass of: SO_0000673
so part of: LRRK1
location: complement(join(5807394..5807571,5809170..5809271,5809648..5810498,5812869..5812985,5814091..5814208,5818583..5818734,5819482..5819676,5821006..5821283,5822425..5822622,5824754..5824920,5827463..5827712,5829532..5829671,5830635..5830798,5833245..5833416,5836596..5836872,5837286..5837445,5837716..5837836,5838875..5839047,5839727..5839891,5842023..5842237,5842652..5842764,5843387..5843516,5849427..5849503,5850569..5850681,5852349..5852486,5853332..5853495,5853598..5853725,5854380..5854606,5871152..5871300,5871719..5871898,5874173..5874344,5883850..5884013,5919159..5919258))
location: region:5807394-5919258:-1
so has part: feature:5919159-5919258:-1:exon
so has part: feature:5883850-5884013:-1:exon
so has part: feature:5874173-5874344:-1:exon
so has part: feature:5871719-5871898:-1:exon
so has part: feature:5871152-5871300:-1:exon
so has part: feature:5854380-5854606:-1:exon
so has part: feature:5853598-5853725:-1:exon
so has part: feature:5853332-5853495:-1:exon
so has part: feature:5852349-5852486:-1:exon
so has part: feature:5850569-5850681:-1:exon
so has part: feature:5849427-5849503:-1:exon
so has part: feature:5843387-5843516:-1:exon
so has part: feature:5842652-5842764:-1:exon
so has part: feature:5842023-5842237:-1:exon
so has part: feature:5839727-5839891:-1:exon
so has part: feature:5838875-5839047:-1:exon
so has part: feature:5837716-5837836:-1:exon
so has part: feature:5837286-5837445:-1:exon
so has part: feature:5836596-5836872:-1:exon
so has part: feature:5833245-5833416:-1:exon
so has part: feature:5830635-5830798:-1:exon
so has part: feature:5829532-5829671:-1:exon
so has part: feature:5827463-5827712:-1:exon
so has part: feature:5824754-5824920:-1:exon
so has part: feature:5822425-5822622:-1:exon
so has part: feature:5821006-5821283:-1:exon
so has part: feature:5819482-5819676:-1:exon
so has part: feature:5818583-5818734:-1:exon
so has part: feature:5814091-5814208:-1:exon
so has part: feature:5812869-5812985:-1:exon
so has part: feature:5809648-5810498:-1:exon
so has part: feature:5809170-5809271:-1:exon
so has part: feature:5807394-5807571:-1:exon

XP_010983637.1
type: Protein
SIO_000068: ncbiprotein

position:5807394:-1
position: 5807394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5919258:-1
position: 5919258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5919159-5919258:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5883850-5884013:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5874173-5874344:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5871719-5871898:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5871152-5871300:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5854380-5854606:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5853598-5853725:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5853332-5853495:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5852349-5852486:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5850569-5850681:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5849427-5849503:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5843387-5843516:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5842652-5842764:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5842023-5842237:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5839727-5839891:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5838875-5839047:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5837716-5837836:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5837286-5837445:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5836596-5836872:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5833245-5833416:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5830635-5830798:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5829532-5829671:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5827463-5827712:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5824754-5824920:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5822425-5822622:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5821006-5821283:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5819482-5819676:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5818583-5818734:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5814091-5814208:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5812869-5812985:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5809648-5810498:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5809170-5809271:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5807394-5807571:-1:exon

LOC116149315
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149315
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5829672..5832944
location: region:5829672-5832944:1
so has part: feature:5829672-5832944:1:exon
subclass of: SO_0000011

116149315
type: Gene
SIO_000068: ncbigene

position:5829672:1
position: 5829672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5832944:1
position: 5832944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5829672-5832944:1:exon

LOC116149315
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149315
product: uncharacterized LOC116149315
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004132895.1
SIO_010081: LOC116149315
subclass of: SO_0000673
so part of: LOC116149315
location: join(5829672..5829746,5830096..5830122,5831839..5832944)
location: region:5829672-5832944:1
so has part: feature:5829672-5829746:1:exon
so has part: feature:5830096-5830122:1:exon
so has part: feature:5831839-5832944:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5829672-5829746:1:exon

position:5829746:1
position: 5829746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5830096-5830122:1:exon

position:5830096:1
position: 5830096
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5830122:1
position: 5830122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5831839-5832944:1:exon

position:5831839:1
position: 5831839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC105093471
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC105093471
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5886374..5887360
location: region:5886374-5887360:1
so has part: feature:5886374-5887360:1:exon

105093471
type: Gene
SIO_000068: ncbigene

position:5886374:1
position: 5886374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5887360:1
position: 5887360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5886374-5887360:1:exon

LOC105093471
type: Exon
subclass of: SO_0000147
RO_0002162: 9838
gene: LOC105093471
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC105093471
subclass of: SO_0000673
so part of: LOC105093471
location: 5886374..5887360
location: region:5886374-5887360:1
so has part: feature:5886374-5887360:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5886374-5887360:1:exon

ALDH1A3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ALDH1A3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5926681..5968385)
location: region:5926681-5968385:-1
so has part: feature:5926681-5968385:-1:exon
subclass of: SO_0000010

105093453
type: Gene
SIO_000068: ncbigene

position:5926681:-1
position: 5926681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5968385:-1
position: 5968385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5926681-5968385:-1:exon

ALDH1A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ALDH1A3
product: aldehyde dehydrogenase 1 family member A3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 40 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_010985334.2
SIO_010081: ALDH1A3
subclass of: SO_0000673
so part of: ALDH1A3
location: complement(join(5926681..5928592,5934599..5934673,5935415..5935572,5936971..5937135,5941605..5941789,5944349..5944451,5951537..5951650,5953310..5953438,5955784..5955845,5956170..5956299,5960836..5960976,5962951..5963055,5968040..5968385))
location: region:5926681-5968385:-1
so has part: feature:5968040-5968385:-1:exon
so has part: feature:5962951-5963055:-1:exon
so has part: feature:5960836-5960976:-1:exon
so has part: feature:5956170-5956299:-1:exon
so has part: feature:5955784-5955845:-1:exon
so has part: feature:5953310-5953438:-1:exon
so has part: feature:5951537-5951650:-1:exon
so has part: feature:5944349-5944451:-1:exon
so has part: feature:5941605-5941789:-1:exon
so has part: feature:5936971-5937135:-1:exon
so has part: feature:5935415-5935572:-1:exon
so has part: feature:5934599-5934673:-1:exon
so has part: feature:5926681-5928592:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5968040-5968385:-1:exon

position:5968040:-1
position: 5968040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5962951-5963055:-1:exon

position:5962951:-1
position: 5962951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5963055:-1
position: 5963055
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5960836-5960976:-1:exon

position:5960836:-1
position: 5960836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5960976:-1
position: 5960976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5956170-5956299:-1:exon

position:5956170:-1
position: 5956170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5956299:-1
position: 5956299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5955784-5955845:-1:exon

position:5955784:-1
position: 5955784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5955845:-1
position: 5955845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5953310-5953438:-1:exon

position:5953310:-1
position: 5953310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5953438:-1
position: 5953438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5951537-5951650:-1:exon

position:5951537:-1
position: 5951537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5951650:-1
position: 5951650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5944349-5944451:-1:exon

position:5944349:-1
position: 5944349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5944451:-1
position: 5944451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5941605-5941789:-1:exon

position:5941605:-1
position: 5941605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5941789:-1
position: 5941789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5936971-5937135:-1:exon

position:5936971:-1
position: 5936971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5937135:-1
position: 5937135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5935415-5935572:-1:exon

position:5935415:-1
position: 5935415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5935572:-1
position: 5935572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5934599-5934673:-1:exon

position:5934599:-1
position: 5934599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5934673:-1
position: 5934673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5926681-5928592:-1:exon

position:5928592:-1
position: 5928592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ALDH1A3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ALDH1A3
product: aldehyde dehydrogenase 1 family member A3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031440467.1
SIO_010081: ALDH1A3
subclass of: SO_0000673
so part of: ALDH1A3
location: complement(join(5926681..5928592,5934599..5934673,5935415..5935572,5936971..5937135,5941605..5941789,5944349..5944451,5951537..5951650,5953310..5953438,5955784..5955845,5956170..5956299,5960836..5960976,5962951..5963055,5967202..5967324))
location: region:5926681-5967324:-1
so has part: feature:5967202-5967324:-1:exon
so has part: feature:5962951-5963055:-1:exon
so has part: feature:5960836-5960976:-1:exon
so has part: feature:5956170-5956299:-1:exon
so has part: feature:5955784-5955845:-1:exon
so has part: feature:5953310-5953438:-1:exon
so has part: feature:5951537-5951650:-1:exon
so has part: feature:5944349-5944451:-1:exon
so has part: feature:5941605-5941789:-1:exon
so has part: feature:5936971-5937135:-1:exon
so has part: feature:5935415-5935572:-1:exon
so has part: feature:5934599-5934673:-1:exon
so has part: feature:5926681-5928592:-1:exon

position:5967324:-1
position: 5967324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5967202-5967324:-1:exon

position:5967202:-1
position: 5967202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5962951-5963055:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5960836-5960976:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5956170-5956299:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5955784-5955845:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5953310-5953438:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5951537-5951650:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5944349-5944451:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5941605-5941789:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5936971-5937135:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5935415-5935572:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5934599-5934673:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5926681-5928592:-1:exon

ALDH1A3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ALDH1A3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aldehyde dehydrogenase family 1 member A3 isoform X2
translation: MATTNGALENGQPDRKSPALPRPVRNLEVKFTKIFINNEWNESKSGKKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSAWRRLDALSRGRLLHQLADLMERDRAILATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVVKPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYGEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGARLECGGSALEDGGLFIKPTVFSEVTDSMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTAAVFTKNLDKALKLASALESGTVWINCYNAIYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLDDKNP
SIO_010081: ALDH1A3
subclass of: SO_0000673
so part of: ALDH1A3
location: complement(join(5928520..5928592,5934599..5934673,5935415..5935572,5936971..5937135,5941605..5941789,5944349..5944451,5951537..5951650,5953310..5953438,5955784..5955845,5956170..5956299,5960836..5960976,5962951..5963055,5968040..5968138))
location: region:5928520-5968138:-1
so has part: feature:5968040-5968138:-1:exon
so has part: feature:5962951-5963055:-1:exon
so has part: feature:5960836-5960976:-1:exon
so has part: feature:5956170-5956299:-1:exon
so has part: feature:5955784-5955845:-1:exon
so has part: feature:5953310-5953438:-1:exon
so has part: feature:5951537-5951650:-1:exon
so has part: feature:5944349-5944451:-1:exon
so has part: feature:5941605-5941789:-1:exon
so has part: feature:5936971-5937135:-1:exon
so has part: feature:5935415-5935572:-1:exon
so has part: feature:5934599-5934673:-1:exon
so has part: feature:5928520-5928592:-1:exon

XP_010983636.1
type: Protein
SIO_000068: ncbiprotein

position:5928520:-1
position: 5928520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5968138:-1
position: 5968138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5968040-5968138:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5962951-5963055:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5960836-5960976:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5956170-5956299:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5955784-5955845:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5953310-5953438:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5951537-5951650:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5944349-5944451:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5941605-5941789:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5936971-5937135:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5935415-5935572:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5934599-5934673:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5928520-5928592:-1:exon

ALDH1A3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ALDH1A3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: aldehyde dehydrogenase family 1 member A3 isoform X1
translation: MVSDLGLGNRGWQGRRVPRLSSFLRCGLGGWSVGKAIFINNEWNESKSGKKFATYNPSTLEKICEVEEGDKPDVDKAVEAAQAAFQRGSAWRRLDALSRGRLLHQLADLMERDRAILATLETMDTGKPFLHAFFIDLEGCIKTLRYFAGWADKIQGRTIPTDDNVVCFTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVVKPAEQTPLTALYLGSLIKEVGFPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGKNPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYGEFVRRSVEYAKKRPVGDPFDVRTEQGPQIDQKQFDKILDLIESGKKEGARLECGGSALEDGGLFIKPTVFSEVTDSMRIAKEEIFGPVQPILKFKNIEEVIKRANSLEYGLTAAVFTKNLDKALKLASALESGTVWINCYNAIYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLDDKNP
SIO_010081: ALDH1A3
subclass of: SO_0000673
so part of: ALDH1A3
location: complement(join(5928520..5928592,5934599..5934673,5935415..5935572,5936971..5937135,5941605..5941789,5944349..5944451,5951537..5951650,5953310..5953438,5955784..5955845,5956170..5956299,5960836..5960976,5962951..5963055,5967202..5967309))
location: region:5928520-5967309:-1
so has part: feature:5967202-5967309:-1:exon
so has part: feature:5962951-5963055:-1:exon
so has part: feature:5960836-5960976:-1:exon
so has part: feature:5956170-5956299:-1:exon
so has part: feature:5955784-5955845:-1:exon
so has part: feature:5953310-5953438:-1:exon
so has part: feature:5951537-5951650:-1:exon
so has part: feature:5944349-5944451:-1:exon
so has part: feature:5941605-5941789:-1:exon
so has part: feature:5936971-5937135:-1:exon
so has part: feature:5935415-5935572:-1:exon
so has part: feature:5934599-5934673:-1:exon
so has part: feature:5928520-5928592:-1:exon

XP_031296327.1
type: Protein
SIO_000068: ncbiprotein

position:5967309:-1
position: 5967309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5967202-5967309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5962951-5963055:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5960836-5960976:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5956170-5956299:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5955784-5955845:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5953310-5953438:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5951537-5951650:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5944349-5944451:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5941605-5941789:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5936971-5937135:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5935415-5935572:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5934599-5934673:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5928520-5928592:-1:exon

LOC116149317
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149317
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6084819..6086700
location: region:6084819-6086700:1
so has part: feature:6084819-6086700:1:exon
subclass of: SO_0000011

116149317
type: Gene
SIO_000068: ncbigene

position:6084819:1
position: 6084819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6086700:1
position: 6086700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6084819-6086700:1:exon

LOC116149317
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9838
nc RNA class: lncRNA
gene: LOC116149317
product: uncharacterized LOC116149317
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_004132896.1
SIO_010081: LOC116149317
subclass of: SO_0000673
so part of: LOC116149317
location: join(6084819..6085660,6086363..6086700)
location: region:6084819-6086700:1
so has part: feature:6084819-6085660:1:exon
so has part: feature:6086363-6086700:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6084819-6085660:1:exon

position:6085660:1
position: 6085660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6086363-6086700:1:exon

position:6086363:1
position: 6086363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ASB7
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ASB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6150463..6199460)
location: region:6150463-6199460:-1
so has part: feature:6150463-6199460:-1:exon
subclass of: SO_0000010

105093451
type: Gene
SIO_000068: ncbigene

position:6150463:-1
position: 6150463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6199460:-1
position: 6199460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6150463-6199460:-1:exon

ASB7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ASB7
product: ankyrin repeat and SOCS box containing 7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_031440468.1
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(6150463..6153877,6168584..6169189,6189577..6189838,6191740..6191864,6198614..6198707,6198931..6199460))
location: region:6150463-6199460:-1
so has part: feature:6198931-6199460:-1:exon
so has part: feature:6198614-6198707:-1:exon
so has part: feature:6191740-6191864:-1:exon
so has part: feature:6189577-6189838:-1:exon
so has part: feature:6168584-6169189:-1:exon
so has part: feature:6150463-6153877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6198931-6199460:-1:exon

position:6198931:-1
position: 6198931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6198614-6198707:-1:exon

position:6198614:-1
position: 6198614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6198707:-1
position: 6198707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6191740-6191864:-1:exon

position:6191740:-1
position: 6191740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6191864:-1
position: 6191864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6189577-6189838:-1:exon

position:6189577:-1
position: 6189577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6189838:-1
position: 6189838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6168584-6169189:-1:exon

position:6168584:-1
position: 6168584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6169189:-1
position: 6169189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6150463-6153877:-1:exon

position:6153877:-1
position: 6153877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ASB7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ASB7
product: ankyrin repeat and SOCS box containing 7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_010985333.2
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(6150463..6153877,6168584..6169189,6189577..6189838,6191740..6191864,6198614..6198707,6198878..6199460))
location: region:6150463-6199460:-1
so has part: feature:6198878-6199460:-1:exon
so has part: feature:6198614-6198707:-1:exon
so has part: feature:6191740-6191864:-1:exon
so has part: feature:6189577-6189838:-1:exon
so has part: feature:6168584-6169189:-1:exon
so has part: feature:6150463-6153877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6198878-6199460:-1:exon

position:6198878:-1
position: 6198878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6198614-6198707:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6191740-6191864:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6189577-6189838:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6168584-6169189:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6150463-6153877:-1:exon

ASB7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ASB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 7
translation: MLHHHCRRNPELQEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGFLLRYAVIKSNHSYCRMFLQRGADTNLGRLEDGQTPLHLSALRDDVLCARMLYNYGADTNTRNYEGQTPLAVSISISGSSRPCLDFLQEVTRQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVMKDYLKHKFDDI
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(6153738..6153877,6168584..6169189,6189577..6189787))
location: region:6153738-6189787:-1
so has part: feature:6189577-6189787:-1:exon
so has part: feature:6168584-6169189:-1:exon
so has part: feature:6153738-6153877:-1:exon

XP_031296328.1
type: Protein
SIO_000068: ncbiprotein

position:6153738:-1
position: 6153738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6189787:-1
position: 6189787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6189577-6189787:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6168584-6169189:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6153738-6153877:-1:exon

ASB7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ASB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat and SOCS box protein 7
translation: MLHHHCRRNPELQEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGFLLRYAVIKSNHSYCRMFLQRGADTNLGRLEDGQTPLHLSALRDDVLCARMLYNYGADTNTRNYEGQTPLAVSISISGSSRPCLDFLQEVTRQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVMKDYLKHKFDDI
SIO_010081: ASB7
subclass of: SO_0000673
so part of: ASB7
location: complement(join(6153738..6153877,6168584..6169189,6189577..6189787))
location: region:6153738-6189787:-1
so has part: feature:6189577-6189787:-1:exon
so has part: feature:6168584-6169189:-1:exon
so has part: feature:6153738-6153877:-1:exon

XP_010983635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6189577-6189787:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6168584-6169189:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6153738-6153877:-1:exon

LINS1
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6199644..6216816
location: region:6199644-6216816:1
so has part: feature:6199644-6216816:1:exon
subclass of: SO_0000010

105093477
type: Gene
SIO_000068: ncbigene

position:6199644:1
position: 6199644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6216816:1
position: 6216816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6199644-6216816:1:exon

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LINS1
product: lines homolog 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_031440470.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6199644..6199787,6209344..6209829,6209934..6210023,6210863..6211004,6211439..6212029,6213193..6213364,6215145..6216814)
location: region:6199644-6216814:1
so has part: feature:6199644-6199787:1:exon
so has part: feature:6209344-6209829:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210863-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216814:1:exon

position:6216814:1
position: 6216814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6199644-6199787:1:exon

position:6199787:1
position: 6199787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6209344-6209829:1:exon

position:6209344:1
position: 6209344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6209829:1
position: 6209829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6209934-6210023:1:exon

position:6209934:1
position: 6209934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6210023:1
position: 6210023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6210863-6211004:1:exon

position:6210863:1
position: 6210863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6211004:1
position: 6211004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6211439-6212029:1:exon

position:6211439:1
position: 6211439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6212029:1
position: 6212029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6213193-6213364:1:exon

position:6213193:1
position: 6213193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6213364:1
position: 6213364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6215145-6216814:1:exon

position:6215145:1
position: 6215145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LINS1
product: lines homolog 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_031440471.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6199660..6199787,6209339..6209829,6209934..6210023,6210899..6211004,6211439..6212029,6213193..6213364,6215145..6216816)
location: region:6199660-6216816:1
so has part: feature:6199660-6199787:1:exon
so has part: feature:6209339-6209829:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210899-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216816:1:exon

position:6199660:1
position: 6199660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6199660-6199787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209339-6209829:1:exon

position:6209339:1
position: 6209339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6209934-6210023:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6210899-6211004:1:exon

position:6210899:1
position: 6210899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6215145-6216816:1:exon

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LINS1
product: lines homolog 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_031440469.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6199660..6199787,6209339..6209829,6209934..6210023,6210863..6211004,6211439..6212029,6213193..6213364,6215145..6216814)
location: region:6199660-6216814:1
so has part: feature:6199660-6199787:1:exon
so has part: feature:6209339-6209829:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210863-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216814:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6199660-6199787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209339-6209829:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6209934-6210023:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6210863-6211004:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6215145-6216814:1:exon

LINS1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LINS1
product: lines homolog 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031440472.1
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6199682..6199787,6209934..6210023,6210863..6211004,6211439..6212029,6213193..6213364,6215145..6216816)
location: region:6199682-6216816:1
so has part: feature:6199682-6199787:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210863-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216816:1:exon

position:6199682:1
position: 6199682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6199682-6199787:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209934-6210023:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6210863-6211004:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6215145-6216816:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X1
translation: MKAFLDILEQLYRKILLGATLENDSHDYVFYLSLAFSDQDCSDCSDNLDVEGVHRPSSVHLATVSIAPVCLKRHSQMSSTREVMLLQLTVIKVMITRTLSVETEFHAKEKYRDIIKILLKSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLREKITLSNSWIAFCQKNLSEYPERDKALYCLSTLTIVMKEILKDTCSQKTEILKQFLTPFNTIFEVFYNSLFSQHFENHQDFSKIVNSLICFLELLELLIASRIHLKLHFTCQRILFLKPSCVLDVISWPVQAFVKRKFIIFIKKCLLCKVGEDLCRGSVPALMPPDDHLDVDMLALADAVLQAVDLGLLRTLSVHGKPSHFGGDEVQPGWEHVPGPDYVILRAASLPIIRSLEIKFQNCASADEMKVDLQRFMSELLTFLKRHLQPSLQSHNLCEWLSRVFVEQDDDMLEAAKALLGIYLKLTRKCEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKTIVFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDHFFTVCKYFDVTESKDSVNIYCCISSLVQDSSSNWTEPGPLAVLSHHRNAHACVCHASDASSEPLNQIVLSKEAYTTLPANSLSPCRASPSLVDYDSSDDSEEESTNQRLANSRLTSFHQEAVKKIQDRIGTSRGEKELSLKPQSRPLVPKESNTPFSVDCDLASDSTASQVGICYRTVKCFEELRGAIYRLQKKNLFPYNPTALLKLLKHVEAIYNKSLNPLYNSGILFPRTVFP
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6209446..6209829,6209934..6210023,6210863..6211004,6211439..6212029,6213193..6213364,6215145..6216069)
location: region:6209446-6216069:1
so has part: feature:6209446-6209829:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210863-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216069:1:exon

XP_031296329.1
type: Protein
SIO_000068: ncbiprotein

position:6209446:1
position: 6209446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6216069:1
position: 6216069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6209446-6209829:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209934-6210023:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6210863-6211004:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6215145-6216069:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X1
translation: MKAFLDILEQLYRKILLGATLENDSHDYVFYLSLAFSDQDCSDCSDNLDVEGVHRPSSVHLATVSIAPVCLKRHSQMSSTREVMLLQLTVIKVMITRTLSVETEFHAKEKYRDIIKILLKSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLREKITLSNSWIAFCQKNLSEYPERDKALYCLSTLTIVMKEILKDTCSQKTEILKQFLTPFNTIFEVFYNSLFSQHFENHQDFSKIVNSLICFLELLELLIASRIHLKLHFTCQRILFLKPSCVLDVISWPVQAFVKRKFIIFIKKCLLCKVGEDLCRGSVPALMPPDDHLDVDMLALADAVLQAVDLGLLRTLSVHGKPSHFGGDEVQPGWEHVPGPDYVILRAASLPIIRSLEIKFQNCASADEMKVDLQRFMSELLTFLKRHLQPSLQSHNLCEWLSRVFVEQDDDMLEAAKALLGIYLKLTRKCEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKTIVFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDHFFTVCKYFDVTESKDSVNIYCCISSLVQDSSSNWTEPGPLAVLSHHRNAHACVCHASDASSEPLNQIVLSKEAYTTLPANSLSPCRASPSLVDYDSSDDSEEESTNQRLANSRLTSFHQEAVKKIQDRIGTSRGEKELSLKPQSRPLVPKESNTPFSVDCDLASDSTASQVGICYRTVKCFEELRGAIYRLQKKNLFPYNPTALLKLLKHVEAIYNKSLNPLYNSGILFPRTVFP
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6209446..6209829,6209934..6210023,6210863..6211004,6211439..6212029,6213193..6213364,6215145..6216069)
location: region:6209446-6216069:1
so has part: feature:6209446-6209829:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210863-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216069:1:exon

XP_031296330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6209446-6209829:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209934-6210023:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6210863-6211004:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6215145-6216069:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X2
translation: MKAFLDILEQLYRKILLGATLENDSHDYVFYLSLAFSDQDCSDCSDNLDVEGVHRPSSVHLATVSIAPVCLKRHSQMSSTREVMLLQLTVIKVMITRTLSVETEFHAKEKYRDIIKILLKSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLREKKNLSEYPERDKALYCLSTLTIVMKEILKDTCSQKTEILKQFLTPFNTIFEVFYNSLFSQHFENHQDFSKIVNSLICFLELLELLIASRIHLKLHFTCQRILFLKPSCVLDVISWPVQAFVKRKFIIFIKKCLLCKVGEDLCRGSVPALMPPDDHLDVDMLALADAVLQAVDLGLLRTLSVHGKPSHFGGDEVQPGWEHVPGPDYVILRAASLPIIRSLEIKFQNCASADEMKVDLQRFMSELLTFLKRHLQPSLQSHNLCEWLSRVFVEQDDDMLEAAKALLGIYLKLTRKCEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKTIVFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDHFFTVCKYFDVTESKDSVNIYCCISSLVQDSSSNWTEPGPLAVLSHHRNAHACVCHASDASSEPLNQIVLSKEAYTTLPANSLSPCRASPSLVDYDSSDDSEEESTNQRLANSRLTSFHQEAVKKIQDRIGTSRGEKELSLKPQSRPLVPKESNTPFSVDCDLASDSTASQVGICYRTVKCFEELRGAIYRLQKKNLFPYNPTALLKLLKHVEAIYNKSLNPLYNSGILFPRTVFP
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6209446..6209829,6209934..6210023,6210899..6211004,6211439..6212029,6213193..6213364,6215145..6216069)
location: region:6209446-6216069:1
so has part: feature:6209446-6209829:1:exon
so has part: feature:6209934-6210023:1:exon
so has part: feature:6210899-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216069:1:exon

XP_031296331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6209446-6209829:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6209934-6210023:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6210899-6211004:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6215145-6216069:1:exon

LINS1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LINS1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1 isoform X3
translation: MFQNSDKLLSHMAAKCLALLLYFQLREKITLSNSWIAFCQKNLSEYPERDKALYCLSTLTIVMKEILKDTCSQKTEILKQFLTPFNTIFEVFYNSLFSQHFENHQDFSKIVNSLICFLELLELLIASRIHLKLHFTCQRILFLKPSCVLDVISWPVQAFVKRKFIIFIKKCLLCKVGEDLCRGSVPALMPPDDHLDVDMLALADAVLQAVDLGLLRTLSVHGKPSHFGGDEVQPGWEHVPGPDYVILRAASLPIIRSLEIKFQNCASADEMKVDLQRFMSELLTFLKRHLQPSLQSHNLCEWLSRVFVEQDDDMLEAAKALLGIYLKLTRKCEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKTIVFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDHFFTVCKYFDVTESKDSVNIYCCISSLVQDSSSNWTEPGPLAVLSHHRNAHACVCHASDASSEPLNQIVLSKEAYTTLPANSLSPCRASPSLVDYDSSDDSEEESTNQRLANSRLTSFHQEAVKKIQDRIGTSRGEKELSLKPQSRPLVPKESNTPFSVDCDLASDSTASQVGICYRTVKCFEELRGAIYRLQKKNLFPYNPTALLKLLKHVEAIYNKSLNPLYNSGILFPRTVFP
SIO_010081: LINS1
subclass of: SO_0000673
so part of: LINS1
location: join(6209940..6210023,6210863..6211004,6211439..6212029,6213193..6213364,6215145..6216069)
location: region:6209940-6216069:1
so has part: feature:6209940-6210023:1:exon
so has part: feature:6210863-6211004:1:exon
so has part: feature:6211439-6212029:1:exon
so has part: feature:6213193-6213364:1:exon
so has part: feature:6215145-6216069:1:exon

XP_031296332.1
type: Protein
SIO_000068: ncbiprotein

position:6209940:1
position: 6209940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6209940-6210023:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6210863-6211004:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6211439-6212029:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6213193-6213364:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6215145-6216069:1:exon

LOC116149318
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LOC116149318
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6237334..6244831
location: region:6237334-6244831:1
so has part: feature:6237334-6244831:1:exon
subclass of: SO_0000010

116149318
type: Gene
SIO_000068: ncbigene

position:6237334:1
position: 6237334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6244831:1
position: 6244831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6237334-6244831:1:exon

LOC116149318
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149318
product: protein Lines homolog 1-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_031440474.1
SIO_010081: LOC116149318
subclass of: SO_0000673
so part of: LOC116149318
location: join(6237334..6237844,6237949..6238038,6238914..6239019,6239454..6240044,6241208..6241379,6243160..6244831)
location: region:6237334-6244831:1
so has part: feature:6237334-6237844:1:exon
so has part: feature:6237949-6238038:1:exon
so has part: feature:6238914-6239019:1:exon
so has part: feature:6239454-6240044:1:exon
so has part: feature:6241208-6241379:1:exon
so has part: feature:6243160-6244831:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6237334-6237844:1:exon

position:6237844:1
position: 6237844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6237949-6238038:1:exon

position:6237949:1
position: 6237949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6238038:1
position: 6238038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6238914-6239019:1:exon

position:6238914:1
position: 6238914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6239019:1
position: 6239019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6239454-6240044:1:exon

position:6239454:1
position: 6239454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6240044:1
position: 6240044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6241208-6241379:1:exon

position:6241208:1
position: 6241208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6241379:1
position: 6241379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6243160-6244831:1:exon

position:6243160:1
position: 6243160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC116149318
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LOC116149318
product: protein Lines homolog 1-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_031440473.1
SIO_010081: LOC116149318
subclass of: SO_0000673
so part of: LOC116149318
location: join(6237334..6237844,6237949..6238038,6238878..6239019,6239454..6240044,6241208..6241379,6243160..6244829)
location: region:6237334-6244829:1
so has part: feature:6237334-6237844:1:exon
so has part: feature:6237949-6238038:1:exon
so has part: feature:6238878-6239019:1:exon
so has part: feature:6239454-6240044:1:exon
so has part: feature:6241208-6241379:1:exon
so has part: feature:6243160-6244829:1:exon

position:6244829:1
position: 6244829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6237334-6237844:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6237949-6238038:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6238878-6239019:1:exon

position:6238878:1
position: 6238878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6239454-6240044:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6241208-6241379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6243160-6244829:1:exon

LOC116149318
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149318
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1-like isoform X1
translation: MKAFLDILEQLYRKILLGATLENDSHDYVFYLSLAFSDQDCSDCSDNLDVEGVHRPSSVHLATVSIAPVCLKRHSQMSSTREVMLLQLTVIKVMITRTLSVETEFHAKEKYRDIIKILLKSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLREKITLSNSWIAFCQKNLSEYPERDKALYCLSTLTIVMKEILKDTCSQKTEILKQFLTPFNTIFEVFYNSLFSQHFENHQDFSKIVNSLICFLELLELLIASRIHLKLHFTCQRILFLKPSCVLDVISWPVQAFVKRKFIIFIKKCLLCKVGEDLCRGSVPALMPPDDHLDVDMLALADAVLQAVDLGLLRTLSVHGKPSHFGGDEVQPGWEHVPGPDYVILRAASLPIIRSLEIKFQNCASADEMKVDLQRFMSELLTFLKRHLQPSLQSHNLCEWLSRVFVEQDDDMLEAAKALLGIYLKLTRKCEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKTIVFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDHFFTVCKYFDVTESKDSVNIYCCISSLVQDSSSNWTEPGPLAVLSHHRNAHACVCHASDASSEPLNQIVLSKEAYTTLPANSLSPCRASPSLVDYDSSDDSEEESTNQRLANSRLTSFHQEAVKKIQDRIGTSRGEKELSLKPQSRPLVPKESNTPFSVDCDLASDSTASQVGICYRTVKCFEELRGAIYRLQKKNLFPYNPTALLKLLKHVEAIYNKSLNPLYNSGILFPRTVFP
SIO_010081: LOC116149318
subclass of: SO_0000673
so part of: LOC116149318
location: join(6237461..6237844,6237949..6238038,6238878..6239019,6239454..6240044,6241208..6241379,6243160..6244084)
location: region:6237461-6244084:1
so has part: feature:6237461-6237844:1:exon
so has part: feature:6237949-6238038:1:exon
so has part: feature:6238878-6239019:1:exon
so has part: feature:6239454-6240044:1:exon
so has part: feature:6241208-6241379:1:exon
so has part: feature:6243160-6244084:1:exon

XP_031296333.1
type: Protein
SIO_000068: ncbiprotein

position:6237461:1
position: 6237461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6244084:1
position: 6244084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6237461-6237844:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6237949-6238038:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6238878-6239019:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6239454-6240044:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6241208-6241379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6243160-6244084:1:exon

LOC116149318
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LOC116149318
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein Lines homolog 1-like isoform X2
translation: MKAFLDILEQLYRKILLGATLENDSHDYVFYLSLAFSDQDCSDCSDNLDVEGVHRPSSVHLATVSIAPVCLKRHSQMSSTREVMLLQLTVIKVMITRTLSVETEFHAKEKYRDIIKILLKSSDIDSKLTCMFQNSDKLLSHMAAKCLALLLYFQLREKKNLSEYPERDKALYCLSTLTIVMKEILKDTCSQKTEILKQFLTPFNTIFEVFYNSLFSQHFENHQDFSKIVNSLICFLELLELLIASRIHLKLHFTCQRILFLKPSCVLDVISWPVQAFVKRKFIIFIKKCLLCKVGEDLCRGSVPALMPPDDHLDVDMLALADAVLQAVDLGLLRTLSVHGKPSHFGGDEVQPGWEHVPGPDYVILRAASLPIIRSLEIKFQNCASADEMKVDLQRFMSELLTFLKRHLQPSLQSHNLCEWLSRVFVEQDDDMLEAAKALLGIYLKLTRKCEATESLTQEKEMWNHHTHENGYNPHCIFLFLLKTIVFDSTVLLDFLISSETCFLEYFVRYLKLLQKDWDHFFTVCKYFDVTESKDSVNIYCCISSLVQDSSSNWTEPGPLAVLSHHRNAHACVCHASDASSEPLNQIVLSKEAYTTLPANSLSPCRASPSLVDYDSSDDSEEESTNQRLANSRLTSFHQEAVKKIQDRIGTSRGEKELSLKPQSRPLVPKESNTPFSVDCDLASDSTASQVGICYRTVKCFEELRGAIYRLQKKNLFPYNPTALLKLLKHVEAIYNKSLNPLYNSGILFPRTVFP
SIO_010081: LOC116149318
subclass of: SO_0000673
so part of: LOC116149318
location: join(6237461..6237844,6237949..6238038,6238914..6239019,6239454..6240044,6241208..6241379,6243160..6244084)
location: region:6237461-6244084:1
so has part: feature:6237461-6237844:1:exon
so has part: feature:6237949-6238038:1:exon
so has part: feature:6238914-6239019:1:exon
so has part: feature:6239454-6240044:1:exon
so has part: feature:6241208-6241379:1:exon
so has part: feature:6243160-6244084:1:exon

XP_031296334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6237461-6237844:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6237949-6238038:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6238914-6239019:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6239454-6240044:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6241208-6241379:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6243160-6244084:1:exon

CERS3
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: CERS3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6264121..6353161
location: region:6264121-6353161:1
so has part: feature:6264121-6353161:1:exon
subclass of: SO_0000010

105093450
type: Gene
SIO_000068: ncbigene

position:6264121:1
position: 6264121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6353161:1
position: 6353161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6264121-6353161:1:exon

CERS3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CERS3
product: ceramide synthase 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_031440475.1
SIO_010081: CERS3
subclass of: SO_0000673
so part of: CERS3
location: join(6264121..6264280,6289210..6289383,6299087..6299204,6305510..6305628,6310992..6311049,6311991..6312041,6312845..6312937,6315703..6315831,6319042..6319148,6329478..6329631,6332108..6332293)
location: region:6264121-6332293:1
so has part: feature:6264121-6264280:1:exon
so has part: feature:6289210-6289383:1:exon
so has part: feature:6299087-6299204:1:exon
so has part: feature:6305510-6305628:1:exon
so has part: feature:6310992-6311049:1:exon
so has part: feature:6311991-6312041:1:exon
so has part: feature:6312845-6312937:1:exon
so has part: feature:6315703-6315831:1:exon
so has part: feature:6319042-6319148:1:exon
so has part: feature:6329478-6329631:1:exon
so has part: feature:6332108-6332293:1:exon

position:6332293:1
position: 6332293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6264121-6264280:1:exon

position:6264280:1
position: 6264280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6289210-6289383:1:exon

position:6289210:1
position: 6289210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6289383:1
position: 6289383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6299087-6299204:1:exon

position:6299087:1
position: 6299087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6299204:1
position: 6299204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6305510-6305628:1:exon

position:6305510:1
position: 6305510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6305628:1
position: 6305628
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6310992-6311049:1:exon

position:6310992:1
position: 6310992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6311049:1
position: 6311049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6311991-6312041:1:exon

position:6311991:1
position: 6311991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6312041:1
position: 6312041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6312845-6312937:1:exon

position:6312845:1
position: 6312845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6312937:1
position: 6312937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6315703-6315831:1:exon

position:6315703:1
position: 6315703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6315831:1
position: 6315831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6319042-6319148:1:exon

position:6319042:1
position: 6319042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6319148:1
position: 6319148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6329478-6329631:1:exon

position:6329478:1
position: 6329478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6329631:1
position: 6329631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6332108-6332293:1:exon

position:6332108:1
position: 6332108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CERS3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: CERS3
product: ceramide synthase 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_010985332.2
SIO_010081: CERS3
subclass of: SO_0000673
so part of: CERS3
location: join(6264131..6264280,6289210..6289383,6299087..6299204,6305510..6305628,6310992..6311049,6311991..6312041,6312845..6312937,6315703..6315831,6319042..6319148,6329478..6329631,6352795..6353161)
location: region:6264131-6353161:1
so has part: feature:6264131-6264280:1:exon
so has part: feature:6289210-6289383:1:exon
so has part: feature:6299087-6299204:1:exon
so has part: feature:6305510-6305628:1:exon
so has part: feature:6310992-6311049:1:exon
so has part: feature:6311991-6312041:1:exon
so has part: feature:6312845-6312937:1:exon
so has part: feature:6315703-6315831:1:exon
so has part: feature:6319042-6319148:1:exon
so has part: feature:6329478-6329631:1:exon
so has part: feature:6352795-6353161:1:exon

position:6264131:1
position: 6264131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6264131-6264280:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6289210-6289383:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6299087-6299204:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6305510-6305628:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6310992-6311049:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6311991-6312041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6312845-6312937:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6315703-6315831:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6319042-6319148:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6329478-6329631:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6352795-6353161:1:exon

position:6352795:1
position: 6352795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CERS3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CERS3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 3 isoform X1
translation: MFQTFKEWFWLERFWLPPTIKWSDLEDHDGLVFAKPSHLYITIPCAFGLMILRHFFEKFIASPLAKTLGIKEEVRKKIMPNTVLENFFKHSTRQPSQTDIYGLAKKCNLTERQVERWFRSRRNQDKPCRMKKFQEACWRFTFYLLITIAGIAFLYDKPWVYDLWEVWNGYPRQALLPSQYWYYVLEMSFYWSLLFSLGSDIKRKDFLAHVIHHLAAISLMSFSWCANYIRSGTLVMIVHDVADFWLESAKMFSYARWKQTCNILFFIFSTVFLISRLIIFPFWILYCTLILPLHYLEPFFSYIFLNLHLMILQVLHVYWGYFILKMLKRCIFMKEIKDVRSDAEDEEEEEEEEEEEEEEKEEVTKSKERNCLKNGLGATKHLIPNGQHGR
SIO_010081: CERS3
subclass of: SO_0000673
so part of: CERS3
location: join(6289211..6289383,6299087..6299204,6305510..6305628,6310992..6311049,6311991..6312041,6312845..6312937,6315703..6315831,6319042..6319148,6329478..6329631,6352795..6352965)
location: region:6289211-6352965:1
so has part: feature:6289211-6289383:1:exon
so has part: feature:6299087-6299204:1:exon
so has part: feature:6305510-6305628:1:exon
so has part: feature:6310992-6311049:1:exon
so has part: feature:6311991-6312041:1:exon
so has part: feature:6312845-6312937:1:exon
so has part: feature:6315703-6315831:1:exon
so has part: feature:6319042-6319148:1:exon
so has part: feature:6329478-6329631:1:exon
so has part: feature:6352795-6352965:1:exon

XP_010983634.1
type: Protein
SIO_000068: ncbiprotein

position:6289211:1
position: 6289211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6352965:1
position: 6352965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6289211-6289383:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6299087-6299204:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6305510-6305628:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6310992-6311049:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6311991-6312041:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6312845-6312937:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6315703-6315831:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6319042-6319148:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6329478-6329631:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6352795-6352965:1:exon

CERS3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: CERS3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ceramide synthase 3 isoform X2
translation: MFQTFKEWFWLERFWLPPTIKWSDLEDHDGLVFAKPSHLYITIPCAFGLMILRHFFEKFIASPLAKTLGIKEEVRKKIMPNTVLENFFKHSTRQPSQTDIYGLAKKCNLTERQVERWFRSRRNQDKPCRMKKFQEACWRFTFYLLITIAGIAFLYDKPWVYDLWEVWNGYPRQALLPSQYWYYVLEMSFYWSLLFSLGSDIKRKDFLAHVIHHLAAISLMSFSWCANYIRSGTLVMIVHDVADFWLESAKMFSYARWKQTCNILFFIFSTVFLISRLIIFPFWILYCTLILPLHYLEPFFSYIFLNLHLMILQVLHVYWGYFILKMLKRCIFMKDTNTYTSWLAGILLCENKSWH
SIO_010081: CERS3
subclass of: SO_0000673
so part of: CERS3
location: join(6289211..6289383,6299087..6299204,6305510..6305628,6310992..6311049,6311991..6312041,6312845..6312937,6315703..6315831,6319042..6319148,6329478..6329631,6332108..6332173)
location: region:6289211-6332173:1
so has part: feature:6289211-6289383:1:exon
so has part: feature:6299087-6299204:1:exon
so has part: feature:6305510-6305628:1:exon
so has part: feature:6310992-6311049:1:exon
so has part: feature:6311991-6312041:1:exon
so has part: feature:6312845-6312937:1:exon
so has part: feature:6315703-6315831:1:exon
so has part: feature:6319042-6319148:1:exon
so has part: feature:6329478-6329631:1:exon
so has part: feature:6332108-6332173:1:exon

XP_031296335.1
type: Protein
SIO_000068: ncbiprotein

position:6332173:1
position: 6332173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6289211-6289383:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6299087-6299204:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6305510-6305628:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6310992-6311049:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6311991-6312041:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6312845-6312937:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6315703-6315831:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6319042-6319148:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6329478-6329631:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6332108-6332173:1:exon

ADAMTS17
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: ADAMTS17
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6379927..6688376
location: region:6379927-6688376:1
so has part: feature:6379927-6688376:1:exon
subclass of: SO_0000010

105093476
type: Gene
SIO_000068: ncbigene

position:6379927:1
position: 6379927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6688376:1
position: 6688376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6379927-6688376:1:exon

ADAMTS17
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: ADAMTS17
product: ADAM metallopeptidase with thrombospondin type 1 motif 17
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_031440476.1
SIO_010081: ADAMTS17
subclass of: SO_0000673
so part of: ADAMTS17
location: join(6379927..6380098,6380573..6380931,6387297..6387305,6391045..6391198,6433108..6433280,6452677..6452760,6453476..6453633,6461954..6461997,6519802..6519907,6554131..6554271,6556053..6556203,6573401..6573502,6574550..6574695,6594103..6594269,6599746..6599873,6608805..6608925,6620378..6620458,6630342..6630499,6633122..6633281,6636364..6636499,6666364..6666568,6670291..6670443,6683956..6684133,6685352..6688376)
location: region:6379927-6688376:1
so has part: feature:6379927-6380098:1:exon
so has part: feature:6380573-6380931:1:exon
so has part: feature:6387297-6387305:1:exon
so has part: feature:6391045-6391198:1:exon
so has part: feature:6433108-6433280:1:exon
so has part: feature:6452677-6452760:1:exon
so has part: feature:6453476-6453633:1:exon
so has part: feature:6461954-6461997:1:exon
so has part: feature:6519802-6519907:1:exon
so has part: feature:6554131-6554271:1:exon
so has part: feature:6556053-6556203:1:exon
so has part: feature:6573401-6573502:1:exon
so has part: feature:6574550-6574695:1:exon
so has part: feature:6594103-6594269:1:exon
so has part: feature:6599746-6599873:1:exon
so has part: feature:6608805-6608925:1:exon
so has part: feature:6620378-6620458:1:exon
so has part: feature:6630342-6630499:1:exon
so has part: feature:6633122-6633281:1:exon
so has part: feature:6636364-6636499:1:exon
so has part: feature:6666364-6666568:1:exon
so has part: feature:6670291-6670443:1:exon
so has part: feature:6683956-6684133:1:exon
so has part: feature:6685352-6688376:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6379927-6380098:1:exon

position:6380098:1
position: 6380098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6380573-6380931:1:exon

position:6380573:1
position: 6380573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6380931:1
position: 6380931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6387297-6387305:1:exon

position:6387297:1
position: 6387297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6387305:1
position: 6387305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6391045-6391198:1:exon

position:6391045:1
position: 6391045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6391198:1
position: 6391198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6433108-6433280:1:exon

position:6433108:1
position: 6433108
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6433280:1
position: 6433280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6452677-6452760:1:exon

position:6452677:1
position: 6452677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6452760:1
position: 6452760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6453476-6453633:1:exon

position:6453476:1
position: 6453476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6453633:1
position: 6453633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6461954-6461997:1:exon

position:6461954:1
position: 6461954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6461997:1
position: 6461997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6519802-6519907:1:exon

position:6519802:1
position: 6519802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6519907:1
position: 6519907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6554131-6554271:1:exon

position:6554131:1
position: 6554131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6554271:1
position: 6554271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6556053-6556203:1:exon

position:6556053:1
position: 6556053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6556203:1
position: 6556203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6573401-6573502:1:exon

position:6573401:1
position: 6573401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6573502:1
position: 6573502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6574550-6574695:1:exon

position:6574550:1
position: 6574550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6574695:1
position: 6574695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6594103-6594269:1:exon

position:6594103:1
position: 6594103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6594269:1
position: 6594269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6599746-6599873:1:exon

position:6599746:1
position: 6599746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6599873:1
position: 6599873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6608805-6608925:1:exon

position:6608805:1
position: 6608805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6608925:1
position: 6608925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6620378-6620458:1:exon

position:6620378:1
position: 6620378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6620458:1
position: 6620458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6630342-6630499:1:exon

position:6630342:1
position: 6630342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6630499:1
position: 6630499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6633122-6633281:1:exon

position:6633122:1
position: 6633122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6633281:1
position: 6633281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6636364-6636499:1:exon

position:6636364:1
position: 6636364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6636499:1
position: 6636499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6666364-6666568:1:exon

position:6666364:1
position: 6666364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6666568:1
position: 6666568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:6670291-6670443:1:exon

position:6670291:1
position: 6670291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6670443:1
position: 6670443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:6683956-6684133:1:exon

position:6683956:1
position: 6683956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6684133:1
position: 6684133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:6685352-6688376:1:exon

position:6685352:1
position: 6685352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ADAMTS17
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: ADAMTS17
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: A disintegrin and metalloproteinase with thrombospondin motifs 17
translation: MCDGALLPPLVLPLLLLLVWGLDPGTAVGDAXADVEVVLPRRVRPDDVHLPPLPGAPGPRRRRRPRTPPRRPAPGPXERALLLHLPAFGRDLYLQLRRDLRFLSGGFEVEEAGAAGRRGRPTELCFYSGRVLGHPGSLVSLSACGAAGELVGLIQLGQEQVLIQPLNSSQGQEHLIRRKWSLTPSPSAEAQLPGQLCQVLTEKKKPRRGQSSRDRRERRNAIRLTNEHTVETLVVADADMVQYHGAEAAQRFILTVMNMVYNMFQHQSLGIKVNIQVTKLVLLRQRPAKLSIGHHGERSLESFCHWQNEEYGGARYLGNNQVPGAKDDTPPVDAAVFVTRTDFCVHKDEPCDTVGIAYLGGVCSAKRKCVLAEDNGLNLAFTIAHELGHNLGMNHDDDHSSCAGRSHIMSGEWVKGRNPSDLSWSSCSREDLENFLKSKVSTCLLVTDPRSHHAVRLPHKLPGMHYSANEQCQILFGTNATFCRNMEHLMCAGLWCLVEGDTSCKTKLDPPLDGTECGADKWCRAGECVSKTPIPEHVDGDWSLWGAWSMCSRTCGTGARFRQRKCDNPPPGPGGAHCLGASVEHAVCENLPCPKGLPSFRDQQCQTHDRLSSKKKGLLTAVVVDDKPCELYCSPLGKESPLLVADRVLDGTPCGPYETDLCVHGRCQKIGCDGIIGSAAKEDRCGVCSGDGKTCRVVKGDFSHSRGTGYIEAAVIPAGARRIRVVEDKPAHSFLALKDSSKRSINSDWKIELPGEFQIAGTTVRYVRRGLWEKISAKGPTKLPLHLMVLLFHDQNYGIHYEYTIPVNYTAENQSEPEKPQDSLFIWTHSGWEGCSVQCGGGERRTIVSCTRIINKTTTLVNDSDCPQASRPEPQVRRCNSHPCQSRWVAGPWSPCSATCEKGIQHREVTCVYQLQNGTHVATRPLYCPVPRPSPVQSCEGQDCLSIWEASEWSQCSANCGKGTRKRTVTCTNSQGKCDASTRPRAEEACEDYSGCYEWKTGDWSKCSSTCGKGLQSRVVQCMHKVTGRHGNECPALSKPAAYRQCHQEVCNDKINVNTITSPRLAALTYKCTRDQWTVYCRVIREKNLCQDMRWYQRCCQTCRDFYANKMRQPPPPPPSS
SIO_010081: ADAMTS17
subclass of: SO_0000673
so part of: ADAMTS17
location: join(6380020..6380098,6380573..6380931,6387297..6387305,6391045..6391198,6433108..6433280,6452677..6452760,6453476..6453633,6461954..6461997,6519802..6519907,6554131..6554271,6556053..6556203,6573401..6573502,6574550..6574695,6594103..6594269,6599746..6599873,6608805..6608925,6620378..6620458,6630342..6630499,6633122..6633281,6636364..6636499,6666364..6666568,6670291..6670443,6683956..6684133,6685352..6685521)
location: region:6380020-6685521:1
so has part: feature:6380020-6380098:1:exon
so has part: feature:6380573-6380931:1:exon
so has part: feature:6387297-6387305:1:exon
so has part: feature:6391045-6391198:1:exon
so has part: feature:6433108-6433280:1:exon
so has part: feature:6452677-6452760:1:exon
so has part: feature:6453476-6453633:1:exon
so has part: feature:6461954-6461997:1:exon
so has part: feature:6519802-6519907:1:exon
so has part: feature:6554131-6554271:1:exon
so has part: feature:6556053-6556203:1:exon
so has part: feature:6573401-6573502:1:exon
so has part: feature:6574550-6574695:1:exon
so has part: feature:6594103-6594269:1:exon
so has part: feature:6599746-6599873:1:exon
so has part: feature:6608805-6608925:1:exon
so has part: feature:6620378-6620458:1:exon
so has part: feature:6630342-6630499:1:exon
so has part: feature:6633122-6633281:1:exon
so has part: feature:6636364-6636499:1:exon
so has part: feature:6666364-6666568:1:exon
so has part: feature:6670291-6670443:1:exon
so has part: feature:6683956-6684133:1:exon
so has part: feature:6685352-6685521:1:exon

XP_031296336.1
type: Protein
SIO_000068: ncbiprotein

position:6380020:1
position: 6380020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6685521:1
position: 6685521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6380020-6380098:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6380573-6380931:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6387297-6387305:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6391045-6391198:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6433108-6433280:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6452677-6452760:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6453476-6453633:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6461954-6461997:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6519802-6519907:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6554131-6554271:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6556053-6556203:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6573401-6573502:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6574550-6574695:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6594103-6594269:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6599746-6599873:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6608805-6608925:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6620378-6620458:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6630342-6630499:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6633122-6633281:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6636364-6636499:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6666364-6666568:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6670291-6670443:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6683956-6684133:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6685352-6685521:1:exon

LYSMD4
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6732165..6738507
location: region:6732165-6738507:1
so has part: feature:6732165-6738507:1:exon
subclass of: SO_0000010

105093449
type: Gene
SIO_000068: ncbigene

position:6732165:1
position: 6732165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6738507:1
position: 6738507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6732165-6738507:1:exon

LYSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LYSMD4
product: LysM domain containing 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_010985330.2
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6732165..6732268,6733647..6733936,6736062..6738507)
location: region:6732165-6738507:1
so has part: feature:6732165-6732268:1:exon
so has part: feature:6733647-6733936:1:exon
so has part: feature:6736062-6738507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6732165-6732268:1:exon

position:6732268:1
position: 6732268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6733647-6733936:1:exon

position:6733647:1
position: 6733647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6733936:1
position: 6733936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6736062-6738507:1:exon

position:6736062:1
position: 6736062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LYSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LYSMD4
product: LysM domain containing 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_031440485.1
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6732276..6733936,6736062..6738507)
location: region:6732276-6738507:1
so has part: feature:6732276-6733936:1:exon
so has part: feature:6736062-6738507:1:exon

position:6732276:1
position: 6732276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6732276-6733936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6736062-6738507:1:exon

LYSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LYSMD4
product: LysM domain containing 4, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_031440486.1
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6732276..6733224,6733647..6733936,6736062..6738507)
location: region:6732276-6738507:1
so has part: feature:6732276-6733224:1:exon
so has part: feature:6733647-6733936:1:exon
so has part: feature:6736062-6738507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6732276-6733224:1:exon

position:6733224:1
position: 6733224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6733647-6733936:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6736062-6738507:1:exon

LYSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LYSMD4
product: LysM domain containing 4, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_031440487.1
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6732276..6733010,6733647..6733936,6736062..6738507)
location: region:6732276-6738507:1
so has part: feature:6732276-6733010:1:exon
so has part: feature:6733647-6733936:1:exon
so has part: feature:6736062-6738507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6732276-6733010:1:exon

position:6733010:1
position: 6733010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6733647-6733936:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6736062-6738507:1:exon

LYSMD4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: LYSMD4
product: LysM domain containing 4, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_010985331.2
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6732276..6732427,6733647..6733936,6736062..6738507)
location: region:6732276-6738507:1
so has part: feature:6732276-6732427:1:exon
so has part: feature:6733647-6733936:1:exon
so has part: feature:6736062-6738507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6732276-6732427:1:exon

position:6732427:1
position: 6732427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6733647-6733936:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6736062-6738507:1:exon

LYSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1
translation: MTALCGINTGVWFSVKKMRQKEVLTKTFQGPAIVCRTPASHVYMFGNGGGDSGDSSEEETHRVALRPRGKDRQKKGAHHPHQPGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKIPVKNHGILTETQKELRPLLSSSTETRVTFEEQPDPDRAAVGASAPSSPLTDFFKGIDQNIERAVQSDIFLSESHCIETSSQPLLPAPPKPLTNGADCGIHWWNAVFIMLLIGIVLPVFYLVYFKIQATSDIPSSLNTTTVPNGSMAMNAVPGQGPKLVIPVPTLPSSDSQFSHTQGGN
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6733604..6733936,6736062..6736670)
location: region:6733604-6736670:1
so has part: feature:6733604-6733936:1:exon
so has part: feature:6736062-6736670:1:exon

XP_031296345.1
type: Protein
SIO_000068: ncbiprotein

position:6733604:1
position: 6733604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6736670:1
position: 6736670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6733604-6733936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6736062-6736670:1:exon

LYSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2
translation: MRQKEVLTKTFQGPAIVCRTPASHVYMFGNGGGDSGDSSEEETHRVALRPRGKDRQKKGAHHPHQPGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKIPVKNHGILTETQKELRPLLSSSTETRVTFEEQPDPDRAAVGASAPSSPLTDFFKGIDQNIERAVQSDIFLSESHCIETSSQPLLPAPPKPLTNGADCGIHWWNAVFIMLLIGIVLPVFYLVYFKIQATSDIPSSLNTTTVPNGSMAMNAVPGQGPKLVIPVPTLPSSDSQFSHTQGGN
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6733655..6733936,6736062..6736670)
location: region:6733655-6736670:1
so has part: feature:6733655-6733936:1:exon
so has part: feature:6736062-6736670:1:exon

XP_031296346.1
type: Protein
SIO_000068: ncbiprotein

position:6733655:1
position: 6733655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6733655-6733936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6736062-6736670:1:exon

LYSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2
translation: MRQKEVLTKTFQGPAIVCRTPASHVYMFGNGGGDSGDSSEEETHRVALRPRGKDRQKKGAHHPHQPGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKIPVKNHGILTETQKELRPLLSSSTETRVTFEEQPDPDRAAVGASAPSSPLTDFFKGIDQNIERAVQSDIFLSESHCIETSSQPLLPAPPKPLTNGADCGIHWWNAVFIMLLIGIVLPVFYLVYFKIQATSDIPSSLNTTTVPNGSMAMNAVPGQGPKLVIPVPTLPSSDSQFSHTQGGN
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6733655..6733936,6736062..6736670)
location: region:6733655-6736670:1
so has part: feature:6733655-6733936:1:exon
so has part: feature:6736062-6736670:1:exon

XP_031296347.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6733655-6733936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6736062-6736670:1:exon

LYSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2
translation: MRQKEVLTKTFQGPAIVCRTPASHVYMFGNGGGDSGDSSEEETHRVALRPRGKDRQKKGAHHPHQPGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKIPVKNHGILTETQKELRPLLSSSTETRVTFEEQPDPDRAAVGASAPSSPLTDFFKGIDQNIERAVQSDIFLSESHCIETSSQPLLPAPPKPLTNGADCGIHWWNAVFIMLLIGIVLPVFYLVYFKIQATSDIPSSLNTTTVPNGSMAMNAVPGQGPKLVIPVPTLPSSDSQFSHTQGGN
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6733655..6733936,6736062..6736670)
location: region:6733655-6736670:1
so has part: feature:6733655-6733936:1:exon
so has part: feature:6736062-6736670:1:exon

XP_010983632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6733655-6733936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6736062-6736670:1:exon

LYSMD4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: LYSMD4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2
translation: MRQKEVLTKTFQGPAIVCRTPASHVYMFGNGGGDSGDSSEEETHRVALRPRGKDRQKKGAHHPHQPGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKIPVKNHGILTETQKELRPLLSSSTETRVTFEEQPDPDRAAVGASAPSSPLTDFFKGIDQNIERAVQSDIFLSESHCIETSSQPLLPAPPKPLTNGADCGIHWWNAVFIMLLIGIVLPVFYLVYFKIQATSDIPSSLNTTTVPNGSMAMNAVPGQGPKLVIPVPTLPSSDSQFSHTQGGN
SIO_010081: LYSMD4
subclass of: SO_0000673
so part of: LYSMD4
location: join(6733655..6733936,6736062..6736670)
location: region:6733655-6736670:1
so has part: feature:6733655-6733936:1:exon
so has part: feature:6736062-6736670:1:exon

XP_010983633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6733655-6733936:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6736062-6736670:1:exon

MEF2A
type: Gene
subclass of: SO_0000704
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6752527..6912254)
location: region:6752527-6912254:-1
so has part: feature:6752527-6912254:-1:exon
subclass of: SO_0000010

105093448
type: Gene
SIO_000068: ncbigene

position:6752527:-1
position: 6752527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6912254:-1
position: 6912254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6752527-6912254:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_031440481.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778575,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912254))
location: region:6752527-6912254:-1
so has part: feature:6911781-6912254:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778575:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912254:-1:exon

position:6911781:-1
position: 6911781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

position:6884239:-1
position: 6884239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6884324:-1
position: 6884324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

position:6828696:-1
position: 6828696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6828888:-1
position: 6828888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

position:6808774:-1
position: 6808774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6808977:-1
position: 6808977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6790355-6790492:-1:exon

position:6790355:-1
position: 6790355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6790492:-1
position: 6790492
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

position:6788007:-1
position: 6788007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6788226:-1
position: 6788226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

position:6787220:-1
position: 6787220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6787279:-1
position: 6787279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778575:-1:exon

position:6778490:-1
position: 6778490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6778575:-1
position: 6778575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6765935-6765958:-1:exon

position:6765935:-1
position: 6765935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6765958:-1
position: 6765958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6762188-6762314:-1:exon

position:6762188:-1
position: 6762188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6762314:-1
position: 6762314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6758449-6758575:-1:exon

position:6758449:-1
position: 6758449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6758575:-1
position: 6758575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6752527-6756660:-1:exon

position:6756660:-1
position: 6756660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_031440482.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778575,6787220..6787279,6788007..6788226,6790558..6790689,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912254))
location: region:6752527-6912254:-1
so has part: feature:6911781-6912254:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778575:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912254:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6790558-6790689:-1:exon

position:6790558:-1
position: 6790558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6790689:-1
position: 6790689
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778575:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_031440483.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6778490..6778575,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912252))
location: region:6752527-6912252:-1
so has part: feature:6911781-6912252:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778575:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

position:6912252:-1
position: 6912252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912252:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778575:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_031440478.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828888,6911781..6912251))
location: region:6752527-6912251:-1
so has part: feature:6911781-6912251:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

position:6912251:-1
position: 6912251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912251:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6778490-6778677:-1:exon

position:6778677:-1
position: 6778677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_031440477.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912251))
location: region:6752527-6912251:-1
so has part: feature:6911781-6912251:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912251:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_010985329.2
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790558..6790689,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912251))
location: region:6752527-6912251:-1
so has part: feature:6911781-6912251:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912251:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_031440479.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6778490..6778677,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912249))
location: region:6752527-6912249:-1
so has part: feature:6911781-6912249:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

position:6912249:-1
position: 6912249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912249:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_031440480.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6778490..6778677,6787220..6787279,6788007..6788226,6790558..6790689,6808774..6808977,6828696..6828888,6884239..6884324,6911781..6912249))
location: region:6752527-6912249:-1
so has part: feature:6911781-6912249:-1:exon
so has part: feature:6884239-6884324:-1:exon
so has part: feature:6828696-6828888:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6911781-6912249:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6884239-6884324:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6828696-6828888:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9838
gene: MEF2A
product: myocyte enhancer factor 2A, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_031440484.1
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6752527..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790558..6790689,6802893..6803031,6808774..6808910))
location: region:6752527-6808910:-1
so has part: feature:6808774-6808910:-1:exon
so has part: feature:6802893-6803031:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6752527-6756660:-1:exon

position:6808910:-1
position: 6808910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6808774-6808910:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6802893-6803031:-1:exon

position:6802893:-1
position: 6802893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6803031:-1
position: 6803031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6752527-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X7
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6778490..6778575,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778575:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296343.1
type: Protein
SIO_000068: ncbiprotein

position:6756264:-1
position: 6756264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6828749:-1
position: 6828749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778575:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X5
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778575,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778575:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778575:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X3
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6778490..6778677,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X1
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X1
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790355..6790492,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790355-6790492:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790355-6790492:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X6
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778575,6787220..6787279,6788007..6788226,6790558..6790689,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778575:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778575:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X4
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6778490..6778677,6787220..6787279,6788007..6788226,6790558..6790689,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X2
translation: MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNLDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790558..6790689,6808774..6808977,6828696..6828749))
location: region:6756264-6828749:-1
so has part: feature:6828696-6828749:-1:exon
so has part: feature:6808774-6808977:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_010983631.2
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6828696-6828749:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6808774-6808977:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6765935-6765958:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6762188-6762314:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6758449-6758575:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6756264-6756660:-1:exon

MEF2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9838
gene: MEF2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: myocyte-specific enhancer factor 2A isoform X8
translation: MVIHRTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLADSSMLSPPQATLHRNVSPGAPQRPPSTGSAGGMLSTSDLTVPNGAGSSPVGNGFVNSRASPNLIGTTGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQAAQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNINIKSEPISPPRDRMTPSGFQQQQQQQPPPPQPPQPPQPPQPQPQAQPQPQPRQEVGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
SIO_010081: MEF2A
subclass of: SO_0000673
so part of: MEF2A
location: complement(join(6756264..6756660,6758449..6758575,6762188..6762314,6765935..6765958,6778490..6778677,6787220..6787279,6788007..6788226,6790558..6790689,6802893..6802907))
location: region:6756264-6802907:-1
so has part: feature:6802893-6802907:-1:exon
so has part: feature:6790558-6790689:-1:exon
so has part: feature:6788007-6788226:-1:exon
so has part: feature:6787220-6787279:-1:exon
so has part: feature:6778490-6778677:-1:exon
so has part: feature:6765935-6765958:-1:exon
so has part: feature:6762188-6762314:-1:exon
so has part: feature:6758449-6758575:-1:exon
so has part: feature:6756264-6756660:-1:exon

XP_031296344.1
type: Protein
SIO_000068: ncbiprotein

position:6802907:-1
position: 6802907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6802893-6802907:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6790558-6790689:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6788007-6788226:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6787220-6787279:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6778490-6778677:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6765935-6765958:-1:exon