Sus scrofa isolate TJ Tabasco breed Duroc chromosome 16, Sscrofa11.1, whole genome shotgun sequence.
type: Entry
definition: Sus scrofa isolate TJ Tabasco breed Duroc chromosome 16, Sscrofa11.1, whole genome shotgun sequence.
sequence version: NC_010458.4
sequence date: 2018-01-12
sequence: sequence
division: CON
label: NC_010458.4
type: RefSeq
SIO_000068: refseq
dblink: PRJNA28993
dblink: SAMN02953785
keyword: WGS
keyword: RefSeq
source: Sus scrofa (pig)
organism: Sus scrofa
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM000827.5.\nOn May 13, 2017 this sequence version replaced NC_010458.3.\nAssembly name: Sscrofa11.1\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by The Swine Genome Sequencing\nConsortium (SGSC) on 2017/02/07. The original whole-genome shotgun\nproject has the accession AEMK00000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: The Swine Genome Sequencing Consortium\n (SGSC)\nAssembly Date :: 2016\nAssembly Method :: Falcon v. OCT-2015\nPolishing Method :: PILON\nAssembly Name :: Sscrofa11\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 65.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Version :: Sus scrofa Annotation Release 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 7.4\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 79944280
topology: linear
so has quality: SO_0000987
location: 1..79944280
location: region:1-79944280:1
RO_0002162: 9823

NC_010458
type: RefSeq
SIO_000068: refseq

PRJNA28993
type: BioProject
SIO_000068: bioproject

SAMN02953785
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79944280:1
position: 79944280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-79944280:1:source
so part of: sequence
organism: Sus scrofa
mol type: genomic DNA
isolate: TJ Tabasco
chromosome: 16
sex: female
breed: Duroc

9823
type: Taxonomy
SIO_000068: taxonomy

ROPN1L
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: ROPN1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 43299..58569
location: region:43299-58569:1
so has part: feature:43299-58569:1:exon
subclass of: SO_0000010

100620566
type: Gene
SIO_000068: ncbigene

position:43299:1
position: 43299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58569:1
position: 58569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43299-58569:1:exon

ROPN1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ROPN1L
product: rhophilin associated tail protein 1 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 19 ESTs, 3 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 97 samples with support for all annotated introns
transcript id: XM_021076812.1
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: join(43299..43436,43763..43937,45556..45679,47845..48006,52989..53164,58385..58569)
location: region:43299-58569:1
so has part: feature:43299-43436:1:exon
so has part: feature:43763-43937:1:exon
so has part: feature:45556-45679:1:exon
so has part: feature:47845-48006:1:exon
so has part: feature:52989-53164:1:exon
so has part: feature:58385-58569:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43299-43436:1:exon

position:43436:1
position: 43436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:43763-43937:1:exon

position:43763:1
position: 43763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:43937:1
position: 43937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:45556-45679:1:exon

position:45556:1
position: 45556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:45679:1
position: 45679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:47845-48006:1:exon

position:47845:1
position: 47845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48006:1
position: 48006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:52989-53164:1:exon

position:52989:1
position: 52989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:53164:1
position: 53164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:58385-58569:1:exon

position:58385:1
position: 58385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ROPN1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ROPN1L
product: rhophilin associated tail protein 1 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 5 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 98 samples with support for all annotated introns
transcript id: XM_003361858.4
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: join(43304..43436,43783..43937,45556..45679,47845..48006,52989..53164,58385..58569)
location: region:43304-58569:1
so has part: feature:43304-43436:1:exon
so has part: feature:43783-43937:1:exon
so has part: feature:45556-45679:1:exon
so has part: feature:47845-48006:1:exon
so has part: feature:52989-53164:1:exon
so has part: feature:58385-58569:1:exon

position:43304:1
position: 43304
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43304-43436:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:43783-43937:1:exon

position:43783:1
position: 43783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:45556-45679:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:47845-48006:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:52989-53164:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:58385-58569:1:exon

ROPN1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ROPN1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ropporin-1-like protein
translation: MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLQWSAGYFSALSRGDPLPVKDRIEMPMATQKTDTGLTQGLLKVLHKQCSHKEYVELADLEQKWKNLCLPIEKFKVLLQLDPCENKIEWIKFLALGCSMLGGSLNTAMKHLCEILTSDPEGGPARIPFEIFSYVYRYLSGLDKEIPASDTESYLSSLKDKVDSRKNGMVGLSDFFTLKKKI
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: join(43807..43937,45556..45679,47845..48006,52989..53164,58385..58448)
location: region:43807-58448:1
so has part: feature:43807-43937:1:exon
so has part: feature:45556-45679:1:exon
so has part: feature:47845-48006:1:exon
so has part: feature:52989-53164:1:exon
so has part: feature:58385-58448:1:exon

XP_020932471.1
type: Protein
SIO_000068: ncbiprotein

position:43807:1
position: 43807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:58448:1
position: 58448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43807-43937:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:45556-45679:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47845-48006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52989-53164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:58385-58448:1:exon

ROPN1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ROPN1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ropporin-1-like protein
translation: MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLQWSAGYFSALSRGDPLPVKDRIEMPMATQKTDTGLTQGLLKVLHKQCSHKEYVELADLEQKWKNLCLPIEKFKVLLQLDPCENKIEWIKFLALGCSMLGGSLNTAMKHLCEILTSDPEGGPARIPFEIFSYVYRYLSGLDKEIPASDTESYLSSLKDKVDSRKNGMVGLSDFFTLKKKI
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: join(43807..43937,45556..45679,47845..48006,52989..53164,58385..58448)
location: region:43807-58448:1
so has part: feature:43807-43937:1:exon
so has part: feature:45556-45679:1:exon
so has part: feature:47845-48006:1:exon
so has part: feature:52989-53164:1:exon
so has part: feature:58385-58448:1:exon

XP_003361906.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:43807-43937:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:45556-45679:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:47845-48006:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52989-53164:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:58385-58448:1:exon

LOC110257292
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257292
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(146545..148508)
location: region:146545-148508:-1
so has part: feature:146545-148508:-1:exon
subclass of: SO_0000011

110257292
type: Gene
SIO_000068: ncbigene

position:146545:-1
position: 146545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148508:-1
position: 148508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:146545-148508:-1:exon

LOC110257292
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257292
product: uncharacterized LOC110257292
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_002339715.1
SIO_010081: LOC110257292
subclass of: SO_0000673
so part of: LOC110257292
location: complement(join(146545..148175,148417..148508))
location: region:146545-148508:-1
so has part: feature:148417-148508:-1:exon
so has part: feature:146545-148175:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:148417-148508:-1:exon

position:148417:-1
position: 148417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:146545-148175:-1:exon

position:148175:-1
position: 148175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ANKRD33B
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: ANKRD33B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 149486..233815
location: region:149486-233815:1
so has part: feature:149486-233815:1:exon
subclass of: SO_0000010

100523704
type: Gene
SIO_000068: ncbigene

position:149486:1
position: 149486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233815:1
position: 233815
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149486-233815:1:exon

ANKRD33B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ANKRD33B
product: ankyrin repeat domain 33B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 ESTs, 81 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 146 samples with support for all annotated introns
transcript id: XM_003134179.4
SIO_010081: ANKRD33B
subclass of: SO_0000673
so part of: ANKRD33B
location: join(149486..149995,196565..196694,216539..216679,227086..233815)
location: region:149486-233815:1
so has part: feature:149486-149995:1:exon
so has part: feature:196565-196694:1:exon
so has part: feature:216539-216679:1:exon
so has part: feature:227086-233815:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:149486-149995:1:exon

position:149995:1
position: 149995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:196565-196694:1:exon

position:196565:1
position: 196565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196694:1
position: 196694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:216539-216679:1:exon

position:216539:1
position: 216539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:216679:1
position: 216679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:227086-233815:1:exon

position:227086:1
position: 227086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ANKRD33B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ANKRD33B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat domain-containing protein 33B
translation: MVLLAGPGPEGGGARRVSPQPPSPPRGAQAEEDPADYEDYEDFSSLPDTRSIASDDSFYPSGGEEEYSSVSSESVPEGFPEGVPEAATLLRAASANDVGLLRALVRRGPSAEEVQETDRNGRTGLIIACYHGFVDTVVVLAECPHVDVNWQDSEGNTALITAAQAGHVTITNYLLNYFPSLDLERRNLFGFTALMKAAMQGRTECIRALMLAGADVHARDPHRGMSPQEWATYTGRFEAVRVIQRLLERPCPEQFGEKYKPELPPPNEAGLKPAGSKNCLQRLTEFVRSKLMSRSHQGLEDGGVLDHMVRMTTSLYSPPVAIVCQTVCPENPPCVGKRRLAVQEILAARGDLHTQAQEKDKAEGTVQQFRTSQTAGVSREGSPRASPSPTSSQLPAAPRRTSLLPLQLLRRSSVRPGVVIPKVRISKAPAPTFQPERAARGSTKDSTHLQLPKWRYKEAKEEKRKAEEAEKQRLAATQKEKRAPSWRKRT
SIO_010081: ANKRD33B
subclass of: SO_0000673
so part of: ANKRD33B
location: join(149630..149995,196565..196694,216539..216679,227086..227921)
location: region:149630-227921:1
so has part: feature:149630-149995:1:exon
so has part: feature:196565-196694:1:exon
so has part: feature:216539-216679:1:exon
so has part: feature:227086-227921:1:exon

XP_003134227.1
type: Protein
SIO_000068: ncbiprotein

position:149630:1
position: 149630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:227921:1
position: 227921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:149630-149995:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196565-196694:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:216539-216679:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:227086-227921:1:exon

DAP
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: DAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(250212..322075)
location: region:250212-322075:-1
so has part: feature:250212-322075:-1:exon
subclass of: SO_0000010

100523520
type: Gene
SIO_000068: ncbigene

position:250212:-1
position: 250212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:322075:-1
position: 322075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:250212-322075:-1:exon

DAP
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: DAP
product: death associated protein
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 154 ESTs, 313 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 181 samples with support for all annotated introns
transcript id: XM_003134178.5
SIO_010081: DAP
subclass of: SO_0000673
so part of: DAP
location: complement(join(250212..252099,253975..254017,309063..309159,321804..322075))
location: region:250212-322075:-1
so has part: feature:321804-322075:-1:exon
so has part: feature:309063-309159:-1:exon
so has part: feature:253975-254017:-1:exon
so has part: feature:250212-252099:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:321804-322075:-1:exon

position:321804:-1
position: 321804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:309063-309159:-1:exon

position:309063:-1
position: 309063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:309159:-1
position: 309159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:253975-254017:-1:exon

position:253975:-1
position: 253975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:254017:-1
position: 254017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:250212-252099:-1:exon

position:252099:-1
position: 252099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DAP
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: DAP
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein 1
translation: MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDAKEEKDKDDQEWESPSPPKPTVFISGAIARGDKDFPPAAAQVAHQKPHASIDKHPCPRTQHIQQPRK
SIO_010081: DAP
subclass of: SO_0000673
so part of: DAP
location: complement(join(251986..252099,253975..254017,309063..309159,321804..321858))
location: region:251986-321858:-1
so has part: feature:321804-321858:-1:exon
so has part: feature:309063-309159:-1:exon
so has part: feature:253975-254017:-1:exon
so has part: feature:251986-252099:-1:exon

XP_003134226.1
type: Protein
SIO_000068: ncbiprotein

position:251986:-1
position: 251986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:321858:-1
position: 321858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321804-321858:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:309063-309159:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:253975-254017:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:251986-252099:-1:exon

LOC100523337
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100523337
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 322148..345957
location: region:322148-345957:1
so has part: feature:322148-345957:1:exon
subclass of: SO_0000011

100523337
type: Gene
SIO_000068: ncbigene

position:322148:1
position: 322148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:345957:1
position: 345957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322148-345957:1:exon

LOC100523337
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC100523337
product: uncharacterized LOC100523337, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XR_001300877.2
SIO_010081: LOC100523337
subclass of: SO_0000673
so part of: LOC100523337
location: join(322148..322445,339225..339483,341510..341834,345150..345957)
location: region:322148-345957:1
so has part: feature:322148-322445:1:exon
so has part: feature:339225-339483:1:exon
so has part: feature:341510-341834:1:exon
so has part: feature:345150-345957:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:322148-322445:1:exon

position:322445:1
position: 322445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:339225-339483:1:exon

position:339225:1
position: 339225
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339483:1
position: 339483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:341510-341834:1:exon

position:341510:1
position: 341510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341834:1
position: 341834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:345150-345957:1:exon

position:345150:1
position: 345150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100523337
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC100523337
product: uncharacterized LOC100523337, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XR_001300879.2
SIO_010081: LOC100523337
subclass of: SO_0000673
so part of: LOC100523337
location: join(322155..322445,339225..339483,345150..345957)
location: region:322155-345957:1
so has part: feature:322155-322445:1:exon
so has part: feature:339225-339483:1:exon
so has part: feature:345150-345957:1:exon

position:322155:1
position: 322155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322155-322445:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:339225-339483:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:345150-345957:1:exon

LOC100523337
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC100523337
product: uncharacterized LOC100523337, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 156 samples with support for all annotated introns
transcript id: XR_001300876.2
SIO_010081: LOC100523337
subclass of: SO_0000673
so part of: LOC100523337
location: join(322155..322445,339225..339504)
location: region:322155-339504:1
so has part: feature:322155-322445:1:exon
so has part: feature:339225-339504:1:exon

position:339504:1
position: 339504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:322155-322445:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:339225-339504:1:exon

LOC100524053
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100524053
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 369505..371606
location: region:369505-371606:1
so has part: feature:369505-371606:1:exon

100524053
type: Gene
SIO_000068: ncbigene

position:369505:1
position: 369505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:371606:1
position: 371606
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369505-371606:1:exon

LOC100524053
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100524053
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100524053
subclass of: SO_0000673
so part of: LOC100524053
location: 369505..369581
location: region:369505-369581:1
so has part: feature:369505-369581:1:exon

position:369581:1
position: 369581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:369505-369581:1:exon

LOC100524053
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100524053
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
pseudo: true
SIO_010081: LOC100524053
subclass of: SO_0000673
so part of: LOC100524053
location: 371290..371606
location: region:371290-371606:1
so has part: feature:371290-371606:1:exon

position:371290:1
position: 371290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:371290-371606:1:exon

CTNND2
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(508630..1521773)
location: region:508630-1521773:-1
so has part: feature:508630-1521773:-1:exon
subclass of: SO_0000010

100517978
type: Gene
SIO_000068: ncbigene

position:508630:-1
position: 508630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1521773:-1
position: 1521773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:508630-1521773:-1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CTNND2
product: catenin delta 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 69 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_021076845.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(508630..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1521514..1521773))
location: region:508630-1521773:-1
so has part: feature:1521514-1521773:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:508630-510499:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1521514-1521773:-1:exon

position:1521514:-1
position: 1521514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

position:1349856:-1
position: 1349856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1349992:-1
position: 1349992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

position:1170662:-1
position: 1170662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1170774:-1
position: 1170774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

position:995503:-1
position: 995503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:995537:-1
position: 995537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

position:994271:-1
position: 994271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:994387:-1
position: 994387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

position:976667:-1
position: 976667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:976839:-1
position: 976839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

position:961736:-1
position: 961736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:962306:-1
position: 962306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

position:926447:-1
position: 926447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:926641:-1
position: 926641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

position:914313:-1
position: 914313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:914568:-1
position: 914568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

position:797384:-1
position: 797384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:797516:-1
position: 797516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

position:758504:-1
position: 758504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:758717:-1
position: 758717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

position:705716:-1
position: 705716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:705899:-1
position: 705899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

position:674425:-1
position: 674425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:674542:-1
position: 674542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

position:668460:-1
position: 668460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:668645:-1
position: 668645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

position:655739:-1
position: 655739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:655912:-1
position: 655912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:641782-641932:-1:exon

position:641782:-1
position: 641782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:641932:-1
position: 641932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:568632-568842:-1:exon

position:568632:-1
position: 568632
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:568842:-1
position: 568842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:558578-558662:-1:exon

position:558578:-1
position: 558578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558662:-1
position: 558662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:530042-530168:-1:exon

position:530042:-1
position: 530042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:530168:-1
position: 530168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:525020-525151:-1:exon

position:525020:-1
position: 525020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:525151:-1
position: 525151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:518883-518956:-1:exon

position:518883:-1
position: 518883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:518956:-1
position: 518956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:508630-510499:-1:exon

position:510499:-1
position: 510499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CTNND2
product: catenin delta 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 43 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_021076841.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(508630..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1521514..1521773))
location: region:508630-1521773:-1
so has part: feature:1521514-1521773:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:508630-510499:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1521514-1521773:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:643278-643352:-1:exon

position:643278:-1
position: 643278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:643352:-1
position: 643352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:508630-510499:-1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CTNND2
product: catenin delta 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 41 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_021076844.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(508630..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1521276..1521502))
location: region:508630-1521502:-1
so has part: feature:1521276-1521502:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:508630-510499:-1:exon

position:1521502:-1
position: 1521502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1521276-1521502:-1:exon

position:1521276:-1
position: 1521276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:508630-510499:-1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CTNND2
product: catenin delta 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 41 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_021076843.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(508630..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1520837..1521244))
location: region:508630-1521244:-1
so has part: feature:1520837-1521244:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:508630-510499:-1:exon

position:1521244:-1
position: 1521244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1520837-1521244:-1:exon

position:1520837:-1
position: 1520837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:508630-510499:-1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CTNND2
product: catenin delta 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 41 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_021076842.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(508630..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1520724..1521244))
location: region:508630-1521244:-1
so has part: feature:1520724-1521244:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:508630-510499:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1520724-1521244:-1:exon

position:1520724:-1
position: 1520724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:508630-510499:-1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X3
translation: MFARRQSGAAPFGAMPVPDQPSSASEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSVSSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTSERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPAQLPARSTQARGAGQSFSQGTTSRAGHLAGPEPAPPPPPPPPREPFAPSLGSAFHLPEAPPAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEPYGKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGTYRTGTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCAGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWDNSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDSESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHTSRKDTMTAQNTGISTLYRNSYGAPAEDIKHNQVSAQPVPQEPSRKDYETYQPFPNSTRNYEESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(510239..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1521514..1521550))
location: region:510239-1521550:-1
so has part: feature:1521514-1521550:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:510239-510499:-1:exon

XP_020932504.1
type: Protein
SIO_000068: ncbiprotein

position:510239:-1
position: 510239
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1521550:-1
position: 1521550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1521514-1521550:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:510239-510499:-1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X1
translation: MFARRQSGAAPFGAMPVPDQPSSASEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSVSSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTSERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPAQLPARSTQARGAGQSFSQGTTSRAGHLAGPEPAPPPPPPPPREPFAPSLGSAFHLPEAPPAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEPYGKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGTYRTGTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCAGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWDNSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDSESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMANALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHTSRKDTMTAQNTGISTLYRNSYGAPAEDIKHNQVSAQPVPQEPSRKDYETYQPFPNSTRNYEESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(510239..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349992,1521514..1521550))
location: region:510239-1521550:-1
so has part: feature:1521514-1521550:-1:exon
so has part: feature:1349856-1349992:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:510239-510499:-1:exon

XP_020932500.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1521514-1521550:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1349856-1349992:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:510239-510499:-1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X2
translation: MPVPDQPSSASEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSVSSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTSERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPAQLPARSTQARGAGQSFSQGTTSRAGHLAGPEPAPPPPPPPPREPFAPSLGSAFHLPEAPPAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEPYGKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGTYRTGTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCAGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWDNSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDSESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMANALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHTSRKDTMTAQNTGISTLYRNSYGAPAEDIKHNQVSAQPVPQEPSRKDYETYQPFPNSTRNYEESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(510239..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349987))
location: region:510239-1349987:-1
so has part: feature:1349856-1349987:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:510239-510499:-1:exon

XP_020932501.1
type: Protein
SIO_000068: ncbiprotein

position:1349987:-1
position: 1349987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1349856-1349987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:510239-510499:-1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X2
translation: MPVPDQPSSASEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSVSSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTSERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPAQLPARSTQARGAGQSFSQGTTSRAGHLAGPEPAPPPPPPPPREPFAPSLGSAFHLPEAPPAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEPYGKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGTYRTGTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCAGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWDNSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDSESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMANALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHTSRKDTMTAQNTGISTLYRNSYGAPAEDIKHNQVSAQPVPQEPSRKDYETYQPFPNSTRNYEESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(510239..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349987))
location: region:510239-1349987:-1
so has part: feature:1349856-1349987:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:510239-510499:-1:exon

XP_020932502.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1349856-1349987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:510239-510499:-1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X2
translation: MPVPDQPSSASEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSVSSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTSERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPAQLPARSTQARGAGQSFSQGTTSRAGHLAGPEPAPPPPPPPPREPFAPSLGSAFHLPEAPPAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEPYGKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHTGTYRTGTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAGPASNYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCAGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWDNSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDSESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMANALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHTSRKDTMTAQNTGISTLYRNSYGAPAEDIKHNQVSAQPVPQEPSRKDYETYQPFPNSTRNYEESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: complement(join(510239..510499,518883..518956,525020..525151,530042..530168,558578..558662,568632..568842,641782..641932,643278..643352,655739..655912,668460..668645,674425..674542,705716..705899,758504..758717,797384..797516,914313..914568,926447..926641,961736..962306,976667..976839,994271..994387,995503..995537,1170662..1170774,1349856..1349987))
location: region:510239-1349987:-1
so has part: feature:1349856-1349987:-1:exon
so has part: feature:1170662-1170774:-1:exon
so has part: feature:995503-995537:-1:exon
so has part: feature:994271-994387:-1:exon
so has part: feature:976667-976839:-1:exon
so has part: feature:961736-962306:-1:exon
so has part: feature:926447-926641:-1:exon
so has part: feature:914313-914568:-1:exon
so has part: feature:797384-797516:-1:exon
so has part: feature:758504-758717:-1:exon
so has part: feature:705716-705899:-1:exon
so has part: feature:674425-674542:-1:exon
so has part: feature:668460-668645:-1:exon
so has part: feature:655739-655912:-1:exon
so has part: feature:643278-643352:-1:exon
so has part: feature:641782-641932:-1:exon
so has part: feature:568632-568842:-1:exon
so has part: feature:558578-558662:-1:exon
so has part: feature:530042-530168:-1:exon
so has part: feature:525020-525151:-1:exon
so has part: feature:518883-518956:-1:exon
so has part: feature:510239-510499:-1:exon

XP_020932503.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1349856-1349987:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1170662-1170774:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:995503-995537:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:994271-994387:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:976667-976839:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:961736-962306:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:926447-926641:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:914313-914568:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:797384-797516:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:758504-758717:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:705716-705899:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:674425-674542:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:668460-668645:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:655739-655912:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:643278-643352:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:641782-641932:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:568632-568842:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:558578-558662:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:530042-530168:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:525020-525151:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:518883-518956:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:510239-510499:-1:exon

DNAH5
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: DNAH5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3114267..3366189)
location: region:3114267-3366189:-1
so has part: feature:3114267-3366189:-1:exon
subclass of: SO_0000010

100623921
type: Gene
SIO_000068: ncbigene

position:3114267:-1
position: 3114267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3366189:-1
position: 3366189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3114267-3366189:-1:exon

DNAH5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: DNAH5
product: dynein axonemal heavy chain 5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 long SRA reads, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_021076646.1
SIO_010081: DNAH5
subclass of: SO_0000673
so part of: DNAH5
location: complement(join(3114267..3116340,3124234..3124465,3125166..3125318,3127961..3128173,3129777..3129992,3131785..3131988,3132831..3133036,3134955..3135174,3139318..3139563,3145809..3145958,3148799..3148920,3154028..3154218,3154713..3154827,3156322..3156564,3162878..3163060,3163921..3164076,3164651..3164967,3165543..3165678,3168808..3168945,3171222..3171401,3176138..3176341,3180498..3180674,3180934..3181048,3182847..3183078,3193070..3193337,3193840..3193992,3197391..3197521,3203175..3203347,3208773..3208971,3211885..3212108,3213395..3213608,3213801..3213923,3229954..3230088,3230770..3230912,3232041..3232264,3232604..3232779,3235843..3236084,3238986..3239132,3243151..3243304,3245091..3245198,3246291..3246425,3248807..3249001,3249336..3249523,3249912..3250090,3256284..3256456,3257978..3258202,3259209..3259421,3264378..3264534,3270329..3270492,3271976..3272129,3275040..3275239,3277444..3277684,3278620..3278858,3279318..3279380,3280674..3280892,3281954..3282189,3282749..3282950,3287768..3287901,3298632..3298719,3298812..3299002,3301269..3301508,3302489..3302654,3308557..3308702,3312746..3312917,3317889..3318095,3319132..3319453,3320200..3320285,3327549..3327656,3330616..3330831,3331614..3331736,3334473..3334580,3335626..3335739,3336927..3337103,3338576..3338713,3341738..3341959,3344283..3344443,3346330..3346414,3350540..3350674,3364900..3366189))
location: region:3114267-3366189:-1
so has part: feature:3364900-3366189:-1:exon
so has part: feature:3350540-3350674:-1:exon
so has part: feature:3346330-3346414:-1:exon
so has part: feature:3344283-3344443:-1:exon
so has part: feature:3341738-3341959:-1:exon
so has part: feature:3338576-3338713:-1:exon
so has part: feature:3336927-3337103:-1:exon
so has part: feature:3335626-3335739:-1:exon
so has part: feature:3334473-3334580:-1:exon
so has part: feature:3331614-3331736:-1:exon
so has part: feature:3330616-3330831:-1:exon
so has part: feature:3327549-3327656:-1:exon
so has part: feature:3320200-3320285:-1:exon
so has part: feature:3319132-3319453:-1:exon
so has part: feature:3317889-3318095:-1:exon
so has part: feature:3312746-3312917:-1:exon
so has part: feature:3308557-3308702:-1:exon
so has part: feature:3302489-3302654:-1:exon
so has part: feature:3301269-3301508:-1:exon
so has part: feature:3298812-3299002:-1:exon
so has part: feature:3298632-3298719:-1:exon
so has part: feature:3287768-3287901:-1:exon
so has part: feature:3282749-3282950:-1:exon
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type: ExactPosition

urn:…
SIO_000300: 69
SIO_000628: feature:3148799-3148920:-1:exon

position:3148799:-1
position: 3148799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3148920:-1
position: 3148920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 70
SIO_000628: feature:3145809-3145958:-1:exon

position:3145809:-1
position: 3145809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3145958:-1
position: 3145958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 71
SIO_000628: feature:3139318-3139563:-1:exon

position:3139318:-1
position: 3139318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3139563:-1
position: 3139563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 72
SIO_000628: feature:3134955-3135174:-1:exon

position:3134955:-1
position: 3134955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3135174:-1
position: 3135174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 73
SIO_000628: feature:3132831-3133036:-1:exon

position:3132831:-1
position: 3132831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3133036:-1
position: 3133036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 74
SIO_000628: feature:3131785-3131988:-1:exon

position:3131785:-1
position: 3131785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3131988:-1
position: 3131988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 75
SIO_000628: feature:3129777-3129992:-1:exon

position:3129777:-1
position: 3129777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3129992:-1
position: 3129992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 76
SIO_000628: feature:3127961-3128173:-1:exon

position:3127961:-1
position: 3127961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3128173:-1
position: 3128173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 77
SIO_000628: feature:3125166-3125318:-1:exon

position:3125166:-1
position: 3125166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3125318:-1
position: 3125318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 78
SIO_000628: feature:3124234-3124465:-1:exon

position:3124234:-1
position: 3124234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3124465:-1
position: 3124465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 79
SIO_000628: feature:3114267-3116340:-1:exon

position:3116340:-1
position: 3116340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DNAH5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: DNAH5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: dynein heavy chain 5, axonemal
translation: MFRIGRRQLWKQSVTRVLTQRLKEEKEAKRARLDGRHDYLFGIVASCVDLNKTEVEDAILEGNQIERIDQLFAAGGLRHLMFYYQDVEVAETGQLGSLGGVNPISGKIKKPKVFVTEGKDVALTGVCVFFIRIHPSRAITPENIHREVSFNMLDTADGGLLNSMRHLLSDIFIPALRATSHGWGELEGLPEASSVRQEFLGSLEGFVNTLSSAEESLKEKVNLQKCDIFELKTPNESVDYLTLANNPETLEKIEGCMKVWIKQTEQVLAENNQLRKEADDLGPRAELEHWKKRLSKFNYLLDQLKNPDVKAVLAVLAAAKSKLLKTWREMDIRITDAANEAKDNVKYLYTLEKCCDPLYSSDPISMIDAIPTLINAIKMIYSISHYYNTSEKITSLFVKVTNQMISACKAYITNNGTASIWSQPQDVVVEKILSAIKLKQEYQHCFHKTKQKLKQHPNEKQFEFSEMYIFGKFETFHRRLAKIMDIFTTFQTYAVLQDSKIEGLDGVVTKYQDIVATIKKKEYNFLDQRKMDFEQDYEEFCKQTNDLHNELQKFMDVTFERIQNTNQALSMLKKFERLNIPNLGIDDKYRRILENYGADIDMISKLYTKQRSDPPLSRDQPPIAGKILWARQLFHRIQQPMQLFQQHPTVLQTAEAKPVIRSYNRVAKVLLEFEVLYHRAWFQQTEEIHIGLEASLLVKAPGTGELFVNFDPQILTLFRETECMSQMGLEVSPLAAALFQKRDVYKKNFSDMKMMLAEYQRVKSKMPPIIEQLMVPHLSKVEEALQPGLAALTWASLNIDIYLKNAFAKIKDLELLLDRVNDLIEFRIDAVLEEMSSTLLCQLPQEEPLSCEDFLQMTKDLCVTAAQVLHFKSSLVEEAVNELINMLLDVEVPSKEEREKVSNINSADSKNESSAKREEGTLDTSTSSLNARPGLLPLTAFARKKKETEVLEEGARELLSHFNHQNTEALLKVTRNTLEAMRRRIHSSNLIHFRDSNSASKMKQNSLPIFRASITLVIPNITMAPVLEDIQQTLNKVVECVVTITKGVRQWSSELLSKRKMHERKTAALPNNEDSDSDAEMGENEPQDTLEMASENLPIPVQNRNYYKNVSDNKEIVKLVSVLSTIINSTKKEVIASMDCFKRYNHIWQKEKEETIMEFIMKNPLLSEFESQILYFQKLEQEINAEPEHICVGAIALYTADLKLTLTAETKAWMVVIGRHCNKKYKSEMENIFTLVEEFNKKLSRPIKDLDDIRIAMAALKEIRDQQIHIDFQVGPIEESYALLNKYGLLIAKEEMDKVDTLRYTWEKLLARASEVQNELVSLQPSFRKELISTVEVFLQDCHQFYLDYDLNGPMASGLKPQEASDRLIMFQNQFDNIYRKYITYTGGEELFGLPVTQYPQLLEIKKQLNLLQKIYTLYNSVIETVNSYHDILWSEVNIEKINSELLEFQNRCRKLPRALKDWQAFLDLKKTIDDFSECCPLLEHMASKAMMQRHWERITALTGHSLDVADETFKLRNIMEAPLLKYKEEIEDICISAVKERDIEQKLKQVINEWDDKTFAFGSFKTRGELLLRGDSTSEIIANMEDSLMLLGSLLSNRYNMPFKAQIQKWVQCLSNSTDIIENWMMVQNLWIYLEAVFVGGDIAKQLPKEAKRFSNIDKSWVKIMTRAHEMPNVVQCCVGDETMGQLLPHLLDQLEICQKSLTGYLEKKRLCFPRFFFVSDPALLEILGQASDAHTIQAHLLNVFDNIKTVKFHEKIYDRILSISSREGETIELDKPVMAEGNVEVWLNSLLEESQASLHLVIRQAAANIQETGFQLIEFLSSFPAQVGLLGIQMMWTRDSEEALRNAKFDKKIMQKTNQSFLELLNTLIDMTTKDLSSMERVKYETLITIHVHQRDIFDGLCHMHIRSPTDFEWLKQCRFYFNEDSDKMMIHITDVPFIYQNEFLGCTDRLVITPLTDRCYITLAQALGMSMGGAPAGPAGTGKTETTKDMGRCLGKY…
SIO_010081: DNAH5
subclass of: SO_0000673
so part of: DNAH5
location: complement(join(3116189..3116340,3124234..3124465,3125166..3125318,3127961..3128173,3129777..3129992,3131785..3131988,3132831..3133036,3134955..3135174,3139318..3139563,3145809..3145958,3148799..3148920,3154028..3154218,3154713..3154827,3156322..3156564,3162878..3163060,3163921..3164076,3164651..3164967,3165543..3165678,3168808..3168945,3171222..3171401,3176138..3176341,3180498..3180674,3180934..3181048,3182847..3183078,3193070..3193337,3193840..3193992,3197391..3197521,3203175..3203347,3208773..3208971,3211885..3212108,3213395..3213608,3213801..3213923,3229954..3230088,3230770..3230912,3232041..3232264,3232604..3232779,3235843..3236084,3238986..3239132,3243151..3243304,3245091..3245198,3246291..3246425,3248807..3249001,3249336..3249523,3249912..3250090,3256284..3256456,3257978..3258202,3259209..3259421,3264378..3264534,3270329..3270492,3271976..3272129,3275040..3275239,3277444..3277684,3278620..3278858,3279318..3279380,3280674..3280892,3281954..3282189,3282749..3282950,3287768..3287901,3298632..3298719,3298812..3299002,3301269..3301508,3302489..3302654,3308557..3308702,3312746..3312917,3317889..3318095,3319132..3319453,3320200..3320285,3327549..3327656,3330616..3330831,3331614..3331736,3334473..3334580,3335626..3335739,3336927..3337103,3338576..3338713,3341738..3341959,3344283..3344443,3346330..3346414,3350540..3350674,3364900..3364956))
location: region:3116189-3364956:-1
so has part: feature:3364900-3364956:-1:exon
so has part: feature:3350540-3350674:-1:exon
so has part: feature:3346330-3346414:-1:exon
so has part: feature:3344283-3344443:-1:exon
so has part: feature:3341738-3341959:-1:exon
so has part: feature:3338576-3338713:-1:exon
so has part: feature:3336927-3337103:-1:exon
so has part: feature:3335626-3335739:-1:exon
so has part: feature:3334473-3334580:-1:exon
so has part: feature:3331614-3331736:-1:exon
so has part: feature:3330616-3330831:-1:exon
so has part: feature:3327549-3327656:-1:exon
so has part: feature:3320200-3320285:-1:exon
so has part: feature:3319132-3319453:-1:exon
so has part: feature:3317889-3318095:-1:exon
so has part: feature:3312746-3312917:-1:exon
so has part: feature:3308557-3308702:-1:exon
so has part: feature:3302489-3302654:-1:exon
so has part: feature:3301269-3301508:-1:exon
so has part: feature:3298812-3299002:-1:exon
so has part: feature:3298632-3298719:-1:exon
so has part: feature:3287768-3287901:-1:exon
so has part: feature:3282749-3282950:-1:exon
so has part: feature:3281954-3282189:-1:exon
so has part: feature:3280674-3280892:-1:exon
so has part: feature:3279318-3279380:-1:exon
so has part: feature:3278620-3278858:-1:exon
so has part: feature:3277444-3277684:-1:exon
so has part: feature:3275040-3275239:-1:exon
so has part: feature:3271976-3272129:-1:exon
so has part: feature:3270329-3270492:-1:exon
so has part: feature:3264378-3264534:-1:exon
so has part: feature:3259209-3259421:-1:exon
so has part: feature:3257978-3258202:-1:exon
so has part: feature:3256284-3256456:-1:exon
so has part: feature:3249912-3250090:-1:exon
so has part: feature:3249336-3249523:-1:exon
so has part: feature:3248807-3249001:-1:exon
so has part: feature:3246291-3246425:-1:exon
so has part: feature:3245091-3245198:-1:exon
so has part: feature:3243151-3243304:-1:exon
so has part: feature:3238986-3239132:-1:exon
so has part: feature:3235843-3236084:-1:exon
so has part: feature:3232604-3232779:-1:exon
so has part: feature:3232041-3232264:-1:exon
so has part: feature:3230770-3230912:-1:exon
so has part: feature:3229954-3230088:-1:exon
so has part: feature:3213801-3213923:-1:exon
so has part: feature:3213395-3213608:-1:exon
so has part: feature:3211885-3212108:-1:exon
so has part: feature:3208773-3208971:-1:exon
so has part: feature:3203175-3203347:-1:exon
so has part: feature:3197391-3197521:-1:exon
so has part: feature:3193840-3193992:-1:exon
so has part: feature:3193070-3193337:-1:exon
so has part: feature:3182847-3183078:-1:exon
so has part: feature:3180934-3181048:-1:exon
so has part: feature:3180498-3180674:-1:exon
so has part: feature:3176138-3176341:-1:exon
so has part: feature:3171222-3171401:-1:exon
so has part: feature:3168808-3168945:-1:exon
so has part: feature:3165543-3165678:-1:exon
so has part: feature:3164651-3164967:-1:exon
so has part: feature:3163921-3164076:-1:exon
so has part: feature:3162878-3163060:-1:exon

XP_020932305.1
type: Protein
SIO_000068: ncbiprotein

position:3116189:-1
position: 3116189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3364956:-1
position: 3364956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3364900-3364956:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3350540-3350674:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3346330-3346414:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3344283-3344443:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3341738-3341959:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3338576-3338713:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3336927-3337103:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3335626-3335739:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3334473-3334580:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3331614-3331736:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3330616-3330831:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3327549-3327656:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3320200-3320285:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3319132-3319453:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3317889-3318095:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3312746-3312917:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3308557-3308702:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3302489-3302654:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3301269-3301508:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3298812-3299002:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3298632-3298719:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3287768-3287901:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3282749-3282950:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3281954-3282189:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3280674-3280892:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3279318-3279380:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3278620-3278858:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3277444-3277684:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3275040-3275239:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:3271976-3272129:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:3270329-3270492:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:3264378-3264534:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:3259209-3259421:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:3257978-3258202:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:3256284-3256456:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:3249912-3250090:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:3249336-3249523:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:3248807-3249001:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:3246291-3246425:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:3245091-3245198:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:3243151-3243304:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:3238986-3239132:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:3235843-3236084:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:3232604-3232779:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:3232041-3232264:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:3230770-3230912:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:3229954-3230088:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:3213801-3213923:-1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:3213395-3213608:-1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:3211885-3212108:-1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:3208773-3208971:-1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:3203175-3203347:-1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:3197391-3197521:-1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:3193840-3193992:-1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:3193070-3193337:-1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:3182847-3183078:-1:exon

urn:…
SIO_000300: 57
SIO_000628: feature:3180934-3181048:-1:exon

urn:…
SIO_000300: 58
SIO_000628: feature:3180498-3180674:-1:exon

urn:…
SIO_000300: 59
SIO_000628: feature:3176138-3176341:-1:exon

urn:…
SIO_000300: 60
SIO_000628: feature:3171222-3171401:-1:exon

urn:…
SIO_000300: 61
SIO_000628: feature:3168808-3168945:-1:exon

urn:…
SIO_000300: 62
SIO_000628: feature:3165543-3165678:-1:exon

urn:…
SIO_000300: 63
SIO_000628: feature:3164651-3164967:-1:exon

urn:…
SIO_000300: 64
SIO_000628: feature:3163921-3164076:-1:exon

urn:…
SIO_000300: 65
SIO_000628: feature:3162878-3163060:-1:exon

urn:…
SIO_000300: 66
SIO_000628: feature:3156322-3156564:-1:exon

urn:…
SIO_000300: 67
SIO_000628: feature:3154713-3154827:-1:exon

urn:…
SIO_000300: 68
SIO_000628: feature:3154028-3154218:-1:exon

urn:…
SIO_000300: 69
SIO_000628: feature:3148799-3148920:-1:exon

urn:…
SIO_000300: 70
SIO_000628: feature:3145809-3145958:-1:exon

urn:…
SIO_000300: 71
SIO_000628: feature:3139318-3139563:-1:exon

urn:…
SIO_000300: 72
SIO_000628: feature:3134955-3135174:-1:exon

urn:…
SIO_000300: 73
SIO_000628: feature:3132831-3133036:-1:exon

urn:…
SIO_000300: 74
SIO_000628: feature:3131785-3131988:-1:exon

urn:…
SIO_000300: 75
SIO_000628: feature:3129777-3129992:-1:exon

urn:…
SIO_000300: 76
SIO_000628: feature:3127961-3128173:-1:exon

urn:…
SIO_000300: 77
SIO_000628: feature:3125166-3125318:-1:exon

urn:…
SIO_000300: 78
SIO_000628: feature:3124234-3124465:-1:exon

urn:…
SIO_000300: 79
SIO_000628: feature:3116189-3116340:-1:exon

TRIO
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: TRIO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3690831..3921554
location: region:3690831-3921554:1
so has part: feature:3690831-3921554:1:exon
subclass of: SO_0000010

100518698
type: Gene
SIO_000068: ncbigene

position:3690831:1
position: 3690831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3921554:1
position: 3921554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3690831-3921554:1:exon

TRIO
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: TRIO
product: trio Rho guanine nucleotide exchange factor, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 25 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_021077143.1
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: join(3690831..3692625,3701131..3701245,3709081..3709273,3711874..3712386,3714242..3714364,3718476..3718667,3726747..3726878,3740043..3740273,3753652..3753774,3766030..3766221,3781836..3782005,3782995..3783169,3787811..3788006,3789140..3789306,3790733..3790852,3792553..3792744,3793149..3793298,3797151..3797265,3801018..3801133,3804693..3804815,3811429..3811623,3811724..3811839,3812667..3812733,3813349..3813458,3814545..3814614,3815204..3815293,3817544..3817636,3819875..3819986,3822189..3822379,3824304..3824405,3827687..3827829,3828423..3828522,3840481..3840724,3878114..3878406,3879907..3880077,3882855..3882950,3889329..3889477,3890964..3891030,3892623..3892726,3894498..3894567,3896721..3896810,3897395..3897487,3898606..3898656,3898889..3898966,3900302..3900493,3902031..3902208,3904478..3905295,3906982..3908926)
location: region:3690831-3908926:1
so has part: feature:3690831-3692625:1:exon
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SIO_000300: 17
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SIO_000300: 22
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SIO_000300: 23
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SIO_000300: 24
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urn:…
SIO_000300: 25
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SIO_000300: 26
SIO_000628: feature:3815204-3815293:1:exon

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urn:…
SIO_000300: 27
SIO_000628: feature:3817544-3817636:1:exon

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SIO_000300: 29
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SIO_000300: 30
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SIO_000300: 31
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SIO_000300: 32
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SIO_000300: 33
SIO_000628: feature:3840481-3840724:1:exon

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SIO_000300: 34
SIO_000628: feature:3878114-3878406:1:exon

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SIO_000300: 36
SIO_000628: feature:3882855-3882950:1:exon

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SIO_000300: 37
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SIO_000300: 40
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urn:…
SIO_000300: 41
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SIO_000300: 42
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SIO_000300: 43
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SIO_000300: 44
SIO_000628: feature:3898889-3898966:1:exon

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SIO_000300: 45
SIO_000628: feature:3900302-3900493:1:exon

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urn:…
SIO_000300: 46
SIO_000628: feature:3902031-3902208:1:exon

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urn:…
SIO_000300: 47
SIO_000628: feature:3904478-3905295:1:exon

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urn:…
SIO_000300: 48
SIO_000628: feature:3906982-3908926:1:exon

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TRIO
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: TRIO
product: trio Rho guanine nucleotide exchange factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 ESTs, 80 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
transcript id: XM_021077142.1
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: join(3690840..3692625,3701131..3701245,3709081..3709273,3711874..3712386,3714242..3714364,3718476..3718667,3726747..3726878,3740043..3740273,3753652..3753774,3766030..3766221,3781836..3782005,3782995..3783169,3787811..3788006,3789140..3789260,3790807..3790852,3792553..3792744,3793149..3793298,3797151..3797265,3801018..3801133,3804693..3804815,3811429..3811623,3811724..3811839,3812667..3812733,3813349..3813458,3814545..3814614,3815204..3815293,3817544..3817636,3819875..3819986,3822189..3822379,3824304..3824405,3827687..3827829,3828423..3828522,3840481..3840724,3878114..3878406,3879907..3880077,3882855..3882950,3889329..3889477,3890964..3891030,3892623..3892726,3894498..3894567,3896721..3896810,3897395..3897487,3898606..3898656,3898889..3898966,3900302..3900493,3902031..3902208,3904478..3905295,3909261..3909508,3910993..3911131,3911942..3911969,3912158..3912320,3912598..3912719,3914005..3914083,3915752..3915952,3918398..3918536,3919183..3921554)
location: region:3690840-3921554:1
so has part: feature:3690840-3692625:1:exon
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so has part: feature:3910993-3911131:1:exon
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so has part: feature:3918398-3918536:1:exon
so has part: feature:3919183-3921554:1:exon

position:3690840:1
position: 3690840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3690840-3692625:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3701131-3701245:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3709081-3709273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3711874-3712386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3714242-3714364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3718476-3718667:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3726747-3726878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3740043-3740273:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3753652-3753774:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3766030-3766221:1:exon

urn:…
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SIO_000628: feature:3781836-3782005:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3782995-3783169:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3787811-3788006:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3789140-3789260:1:exon

position:3789260:1
position: 3789260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3790807-3790852:1:exon

position:3790807:1
position: 3790807
reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 16
SIO_000628: feature:3792553-3792744:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3793149-3793298:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3797151-3797265:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3801018-3801133:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3804693-3804815:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3811429-3811623:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3811724-3811839:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3812667-3812733:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3813349-3813458:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3814545-3814614:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3815204-3815293:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3817544-3817636:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3819875-3819986:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3822189-3822379:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:3824304-3824405:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:3827687-3827829:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:3828423-3828522:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:3840481-3840724:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:3878114-3878406:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:3879907-3880077:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:3882855-3882950:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:3889329-3889477:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:3890964-3891030:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:3892623-3892726:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:3894498-3894567:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:3896721-3896810:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:3897395-3897487:1:exon

urn:…
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SIO_000628: feature:3898606-3898656:1:exon

urn:…
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SIO_000628: feature:3898889-3898966:1:exon

urn:…
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SIO_000628: feature:3900302-3900493:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:3902031-3902208:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:3904478-3905295:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:3909261-3909508:1:exon

position:3909261:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3909508:1
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reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 49
SIO_000628: feature:3910993-3911131:1:exon

position:3910993:1
position: 3910993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3911131:1
position: 3911131
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 50
SIO_000628: feature:3911942-3911969:1:exon

position:3911942:1
position: 3911942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3911969:1
position: 3911969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 51
SIO_000628: feature:3912158-3912320:1:exon

position:3912158:1
position: 3912158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3912320:1
position: 3912320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 52
SIO_000628: feature:3912598-3912719:1:exon

position:3912598:1
position: 3912598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3912719:1
position: 3912719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 53
SIO_000628: feature:3914005-3914083:1:exon

position:3914005:1
position: 3914005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3914083:1
position: 3914083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 54
SIO_000628: feature:3915752-3915952:1:exon

position:3915752:1
position: 3915752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3915952:1
position: 3915952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 55
SIO_000628: feature:3918398-3918536:1:exon

position:3918398:1
position: 3918398
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3918536:1
position: 3918536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 56
SIO_000628: feature:3919183-3921554:1:exon

position:3919183:1
position: 3919183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRIO
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: TRIO
product: trio Rho guanine nucleotide exchange factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 ESTs, 96 long SRA reads, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 163 samples with support for all annotated introns
transcript id: XM_021077141.1
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: join(3690841..3692625,3701131..3701245,3709081..3709273,3711874..3712386,3714242..3714364,3718476..3718667,3726747..3726878,3740043..3740273,3753652..3753774,3766030..3766221,3781836..3782005,3782995..3783169,3787811..3788006,3789140..3789306,3790733..3790852,3792553..3792744,3793149..3793298,3797151..3797265,3801018..3801133,3804693..3804815,3811429..3811623,3811724..3811839,3812667..3812733,3813349..3813458,3814545..3814614,3815204..3815293,3817544..3817636,3819875..3819986,3822189..3822379,3824304..3824405,3827687..3827829,3828423..3828522,3840481..3840724,3878114..3878406,3879907..3880077,3882855..3882950,3889329..3889477,3890964..3891030,3892623..3892726,3894498..3894567,3896721..3896810,3897395..3897487,3898606..3898656,3898889..3898966,3900302..3900493,3902031..3902208,3904478..3905295,3909261..3909508,3910993..3911131,3911942..3911969,3912158..3912320,3912598..3912719,3914005..3914083,3915752..3915952,3918398..3918536,3919183..3921554)
location: region:3690841-3921554:1
so has part: feature:3690841-3692625:1:exon
so has part: feature:3701131-3701245:1:exon
so has part: feature:3709081-3709273:1:exon
so has part: feature:3711874-3712386:1:exon
so has part: feature:3714242-3714364:1:exon
so has part: feature:3718476-3718667:1:exon
so has part: feature:3726747-3726878:1:exon
so has part: feature:3740043-3740273:1:exon
so has part: feature:3753652-3753774:1:exon
so has part: feature:3766030-3766221:1:exon
so has part: feature:3781836-3782005:1:exon
so has part: feature:3782995-3783169:1:exon
so has part: feature:3787811-3788006:1:exon
so has part: feature:3789140-3789306:1:exon
so has part: feature:3790733-3790852:1:exon
so has part: feature:3792553-3792744:1:exon
so has part: feature:3793149-3793298:1:exon
so has part: feature:3797151-3797265:1:exon
so has part: feature:3801018-3801133:1:exon
so has part: feature:3804693-3804815:1:exon
so has part: feature:3811429-3811623:1:exon
so has part: feature:3811724-3811839:1:exon
so has part: feature:3812667-3812733:1:exon
so has part: feature:3813349-3813458:1:exon
so has part: feature:3814545-3814614:1:exon
so has part: feature:3815204-3815293:1:exon
so has part: feature:3817544-3817636:1:exon
so has part: feature:3819875-3819986:1:exon
so has part: feature:3822189-3822379:1:exon
so has part: feature:3824304-3824405:1:exon
so has part: feature:3827687-3827829:1:exon
so has part: feature:3828423-3828522:1:exon
so has part: feature:3840481-3840724:1:exon
so has part: feature:3878114-3878406:1:exon
so has part: feature:3879907-3880077:1:exon
so has part: feature:3882855-3882950:1:exon
so has part: feature:3889329-3889477:1:exon
so has part: feature:3890964-3891030:1:exon
so has part: feature:3892623-3892726:1:exon
so has part: feature:3894498-3894567:1:exon
so has part: feature:3896721-3896810:1:exon
so has part: feature:3897395-3897487:1:exon
so has part: feature:3898606-3898656:1:exon
so has part: feature:3898889-3898966:1:exon
so has part: feature:3900302-3900493:1:exon
so has part: feature:3902031-3902208:1:exon
so has part: feature:3904478-3905295:1:exon
so has part: feature:3909261-3909508:1:exon
so has part: feature:3910993-3911131:1:exon
so has part: feature:3911942-3911969:1:exon
so has part: feature:3912158-3912320:1:exon
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so has part: feature:3914005-3914083:1:exon
so has part: feature:3915752-3915952:1:exon
so has part: feature:3918398-3918536:1:exon
so has part: feature:3919183-3921554:1:exon

position:3690841:1
position: 3690841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3690841-3692625:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3701131-3701245:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3709081-3709273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3711874-3712386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3714242-3714364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3718476-3718667:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3726747-3726878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3740043-3740273:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3753652-3753774:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3766030-3766221:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3781836-3782005:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3782995-3783169:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3787811-3788006:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3789140-3789306:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3790733-3790852:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3792553-3792744:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3793149-3793298:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3797151-3797265:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3801018-3801133:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3804693-3804815:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3811429-3811623:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3811724-3811839:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3812667-3812733:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3813349-3813458:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3814545-3814614:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3815204-3815293:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3817544-3817636:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3819875-3819986:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3822189-3822379:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:3824304-3824405:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:3827687-3827829:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:3828423-3828522:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:3840481-3840724:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:3878114-3878406:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:3879907-3880077:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:3882855-3882950:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:3889329-3889477:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:3890964-3891030:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:3892623-3892726:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:3894498-3894567:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:3896721-3896810:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:3897395-3897487:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:3898606-3898656:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:3898889-3898966:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:3900302-3900493:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:3902031-3902208:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:3904478-3905295:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:3909261-3909508:1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:3910993-3911131:1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:3911942-3911969:1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:3912158-3912320:1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:3912598-3912719:1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:3914005-3914083:1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:3915752-3915952:1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:3918398-3918536:1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:3919183-3921554:1:exon

TRIO
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: TRIO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: triple functional domain protein isoform X1
translation: MKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRIRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHVALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNATHMLSRLEELQDMLAKKELPQDLEGARNMIEEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSDSFPKKNSGSGNADLQSLLPKVSAMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGTSHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSSVFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLRVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKVLLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSISHIETVLQQLDEAQAQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVNMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASIPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFTACNSTELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKDSLSVSSNDASPPASVASLQPHMMGAQSSPGPKRPGNTLRKWLTSPVRRLSSGKADGHVKKLAHKHKKSREVRKSADAGSQKDSDDSAATPQDETVEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEELVKSKMALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKSSSLKRRHYVLQELVETERDYVRDLGCVVEGYMALMKEDGVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYI…
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: join(3692571..3692625,3701131..3701245,3709081..3709273,3711874..3712386,3714242..3714364,3718476..3718667,3726747..3726878,3740043..3740273,3753652..3753774,3766030..3766221,3781836..3782005,3782995..3783169,3787811..3788006,3789140..3789306,3790733..3790852,3792553..3792744,3793149..3793298,3797151..3797265,3801018..3801133,3804693..3804815,3811429..3811623,3811724..3811839,3812667..3812733,3813349..3813458,3814545..3814614,3815204..3815293,3817544..3817636,3819875..3819986,3822189..3822379,3824304..3824405,3827687..3827829,3828423..3828522,3840481..3840724,3878114..3878406,3879907..3880077,3882855..3882950,3889329..3889477,3890964..3891030,3892623..3892726,3894498..3894567,3896721..3896810,3897395..3897487,3898606..3898656,3898889..3898966,3900302..3900493,3902031..3902208,3904478..3905295,3909261..3909508,3910993..3911131,3911942..3911969,3912158..3912320,3912598..3912719,3914005..3914083,3915752..3915952,3918398..3918536,3919183..3919737)
location: region:3692571-3919737:1
so has part: feature:3692571-3692625:1:exon
so has part: feature:3701131-3701245:1:exon
so has part: feature:3709081-3709273:1:exon
so has part: feature:3711874-3712386:1:exon
so has part: feature:3714242-3714364:1:exon
so has part: feature:3718476-3718667:1:exon
so has part: feature:3726747-3726878:1:exon
so has part: feature:3740043-3740273:1:exon
so has part: feature:3753652-3753774:1:exon
so has part: feature:3766030-3766221:1:exon
so has part: feature:3781836-3782005:1:exon
so has part: feature:3782995-3783169:1:exon
so has part: feature:3787811-3788006:1:exon
so has part: feature:3789140-3789306:1:exon
so has part: feature:3790733-3790852:1:exon
so has part: feature:3792553-3792744:1:exon
so has part: feature:3793149-3793298:1:exon
so has part: feature:3797151-3797265:1:exon
so has part: feature:3801018-3801133:1:exon
so has part: feature:3804693-3804815:1:exon
so has part: feature:3811429-3811623:1:exon
so has part: feature:3811724-3811839:1:exon
so has part: feature:3812667-3812733:1:exon
so has part: feature:3813349-3813458:1:exon
so has part: feature:3814545-3814614:1:exon
so has part: feature:3815204-3815293:1:exon
so has part: feature:3817544-3817636:1:exon
so has part: feature:3819875-3819986:1:exon
so has part: feature:3822189-3822379:1:exon
so has part: feature:3824304-3824405:1:exon
so has part: feature:3827687-3827829:1:exon
so has part: feature:3828423-3828522:1:exon
so has part: feature:3840481-3840724:1:exon
so has part: feature:3878114-3878406:1:exon
so has part: feature:3879907-3880077:1:exon
so has part: feature:3882855-3882950:1:exon
so has part: feature:3889329-3889477:1:exon
so has part: feature:3890964-3891030:1:exon
so has part: feature:3892623-3892726:1:exon
so has part: feature:3894498-3894567:1:exon
so has part: feature:3896721-3896810:1:exon
so has part: feature:3897395-3897487:1:exon
so has part: feature:3898606-3898656:1:exon
so has part: feature:3898889-3898966:1:exon
so has part: feature:3900302-3900493:1:exon
so has part: feature:3902031-3902208:1:exon
so has part: feature:3904478-3905295:1:exon
so has part: feature:3909261-3909508:1:exon
so has part: feature:3910993-3911131:1:exon
so has part: feature:3911942-3911969:1:exon
so has part: feature:3912158-3912320:1:exon
so has part: feature:3912598-3912719:1:exon
so has part: feature:3914005-3914083:1:exon
so has part: feature:3915752-3915952:1:exon
so has part: feature:3918398-3918536:1:exon
so has part: feature:3919183-3919737:1:exon

XP_020932800.1
type: Protein
SIO_000068: ncbiprotein

position:3692571:1
position: 3692571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3919737:1
position: 3919737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3692571-3692625:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3701131-3701245:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3709081-3709273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3711874-3712386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3714242-3714364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3718476-3718667:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3726747-3726878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3740043-3740273:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3753652-3753774:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3766030-3766221:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3781836-3782005:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3782995-3783169:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3787811-3788006:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3789140-3789306:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3790733-3790852:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3792553-3792744:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3793149-3793298:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3797151-3797265:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3801018-3801133:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3804693-3804815:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3811429-3811623:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3811724-3811839:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3812667-3812733:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3813349-3813458:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3814545-3814614:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3815204-3815293:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3817544-3817636:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3819875-3819986:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3822189-3822379:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:3824304-3824405:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:3827687-3827829:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:3828423-3828522:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:3840481-3840724:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:3878114-3878406:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:3879907-3880077:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:3882855-3882950:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:3889329-3889477:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:3890964-3891030:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:3892623-3892726:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:3894498-3894567:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:3896721-3896810:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:3897395-3897487:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:3898606-3898656:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:3898889-3898966:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:3900302-3900493:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:3902031-3902208:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:3904478-3905295:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:3909261-3909508:1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:3910993-3911131:1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:3911942-3911969:1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:3912158-3912320:1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:3912598-3912719:1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:3914005-3914083:1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:3915752-3915952:1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:3918398-3918536:1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:3919183-3919737:1:exon

TRIO
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: TRIO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: triple functional domain protein isoform X2
translation: MKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRIRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHVALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNATHMLSRLEELQDMLAKKELPQDLEGARNMIEEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSDSFPKKNSGSGNADLQSLLPKVSAMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGTSHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSSVFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLRVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKVLLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSISHIETVLQQLDEAQAQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVNMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASIPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFTACNSTELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKDSLSVSSNDASPPASVASLQPHMMGAQSSPGPKRPGNTLRKWLTSPVRRLSSGKADGHVKKLAHKHKKSREVRKSADAGSQKDSDDSAATPQDETVEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEELVKSKMALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKSSSLKRRHYVLQELVETERDYVRDLGCVVEGYMALMKEDGVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYIVYCQNKPKSEHIVSEYIDTFFEDLKQRLGHRLQLTDLLIK…
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: join(3692571..3692625,3701131..3701245,3709081..3709273,3711874..3712386,3714242..3714364,3718476..3718667,3726747..3726878,3740043..3740273,3753652..3753774,3766030..3766221,3781836..3782005,3782995..3783169,3787811..3788006,3789140..3789260,3790807..3790852,3792553..3792744,3793149..3793298,3797151..3797265,3801018..3801133,3804693..3804815,3811429..3811623,3811724..3811839,3812667..3812733,3813349..3813458,3814545..3814614,3815204..3815293,3817544..3817636,3819875..3819986,3822189..3822379,3824304..3824405,3827687..3827829,3828423..3828522,3840481..3840724,3878114..3878406,3879907..3880077,3882855..3882950,3889329..3889477,3890964..3891030,3892623..3892726,3894498..3894567,3896721..3896810,3897395..3897487,3898606..3898656,3898889..3898966,3900302..3900493,3902031..3902208,3904478..3905295,3909261..3909508,3910993..3911131,3911942..3911969,3912158..3912320,3912598..3912719,3914005..3914083,3915752..3915952,3918398..3918536,3919183..3919737)
location: region:3692571-3919737:1
so has part: feature:3692571-3692625:1:exon
so has part: feature:3701131-3701245:1:exon
so has part: feature:3709081-3709273:1:exon
so has part: feature:3711874-3712386:1:exon
so has part: feature:3714242-3714364:1:exon
so has part: feature:3718476-3718667:1:exon
so has part: feature:3726747-3726878:1:exon
so has part: feature:3740043-3740273:1:exon
so has part: feature:3753652-3753774:1:exon
so has part: feature:3766030-3766221:1:exon
so has part: feature:3781836-3782005:1:exon
so has part: feature:3782995-3783169:1:exon
so has part: feature:3787811-3788006:1:exon
so has part: feature:3789140-3789260:1:exon
so has part: feature:3790807-3790852:1:exon
so has part: feature:3792553-3792744:1:exon
so has part: feature:3793149-3793298:1:exon
so has part: feature:3797151-3797265:1:exon
so has part: feature:3801018-3801133:1:exon
so has part: feature:3804693-3804815:1:exon
so has part: feature:3811429-3811623:1:exon
so has part: feature:3811724-3811839:1:exon
so has part: feature:3812667-3812733:1:exon
so has part: feature:3813349-3813458:1:exon
so has part: feature:3814545-3814614:1:exon
so has part: feature:3815204-3815293:1:exon
so has part: feature:3817544-3817636:1:exon
so has part: feature:3819875-3819986:1:exon
so has part: feature:3822189-3822379:1:exon
so has part: feature:3824304-3824405:1:exon
so has part: feature:3827687-3827829:1:exon
so has part: feature:3828423-3828522:1:exon
so has part: feature:3840481-3840724:1:exon
so has part: feature:3878114-3878406:1:exon
so has part: feature:3879907-3880077:1:exon
so has part: feature:3882855-3882950:1:exon
so has part: feature:3889329-3889477:1:exon
so has part: feature:3890964-3891030:1:exon
so has part: feature:3892623-3892726:1:exon
so has part: feature:3894498-3894567:1:exon
so has part: feature:3896721-3896810:1:exon
so has part: feature:3897395-3897487:1:exon
so has part: feature:3898606-3898656:1:exon
so has part: feature:3898889-3898966:1:exon
so has part: feature:3900302-3900493:1:exon
so has part: feature:3902031-3902208:1:exon
so has part: feature:3904478-3905295:1:exon
so has part: feature:3909261-3909508:1:exon
so has part: feature:3910993-3911131:1:exon
so has part: feature:3911942-3911969:1:exon
so has part: feature:3912158-3912320:1:exon
so has part: feature:3912598-3912719:1:exon
so has part: feature:3914005-3914083:1:exon
so has part: feature:3915752-3915952:1:exon
so has part: feature:3918398-3918536:1:exon
so has part: feature:3919183-3919737:1:exon

XP_020932801.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3692571-3692625:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3701131-3701245:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3709081-3709273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3711874-3712386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3714242-3714364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3718476-3718667:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3726747-3726878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3740043-3740273:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3753652-3753774:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3766030-3766221:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3781836-3782005:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3782995-3783169:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3787811-3788006:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3789140-3789260:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3790807-3790852:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3792553-3792744:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3793149-3793298:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3797151-3797265:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3801018-3801133:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3804693-3804815:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3811429-3811623:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3811724-3811839:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3812667-3812733:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3813349-3813458:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3814545-3814614:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3815204-3815293:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3817544-3817636:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3819875-3819986:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3822189-3822379:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:3824304-3824405:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:3827687-3827829:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:3828423-3828522:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:3840481-3840724:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:3878114-3878406:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:3879907-3880077:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:3882855-3882950:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:3889329-3889477:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:3890964-3891030:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:3892623-3892726:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:3894498-3894567:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:3896721-3896810:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:3897395-3897487:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:3898606-3898656:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:3898889-3898966:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:3900302-3900493:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:3902031-3902208:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:3904478-3905295:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:3909261-3909508:1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:3910993-3911131:1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:3911942-3911969:1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:3912158-3912320:1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:3912598-3912719:1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:3914005-3914083:1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:3915752-3915952:1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:3918398-3918536:1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:3919183-3919737:1:exon

TRIO
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: TRIO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: triple functional domain protein isoform X3
translation: MKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRIRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHVALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNATHMLSRLEELQDMLAKKELPQDLEGARNMIEEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSDSFPKKNSGSGNADLQSLLPKVSAMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGTSHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSSVFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLRVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKVLLDMSVSFHTHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSISHIETVLQQLDEAQAQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVNMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASIPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTVHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFTACNSTELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKDSLSVSSNDASPPASVASLQPHMMGAQSSPGPKRPGNTLRKWLTSPVRRLSSGKADGHVKKLAHKHKKSREVRKSADAGSQKDSDDSAATPQDETVEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEELVKSKMALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKSSSLKRRHYVLQELVETERDYVRDLGCVVEGYMALMKEDGVPDDMKGKDKIVFGNIHQIYDWHRDFFLGELEKCLEDPEKLGSLFVKHERRLHMYI…
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: join(3692571..3692625,3701131..3701245,3709081..3709273,3711874..3712386,3714242..3714364,3718476..3718667,3726747..3726878,3740043..3740273,3753652..3753774,3766030..3766221,3781836..3782005,3782995..3783169,3787811..3788006,3789140..3789306,3790733..3790852,3792553..3792744,3793149..3793298,3797151..3797265,3801018..3801133,3804693..3804815,3811429..3811623,3811724..3811839,3812667..3812733,3813349..3813458,3814545..3814614,3815204..3815293,3817544..3817636,3819875..3819986,3822189..3822379,3824304..3824405,3827687..3827829,3828423..3828522,3840481..3840724,3878114..3878406,3879907..3880077,3882855..3882950,3889329..3889477,3890964..3891030,3892623..3892726,3894498..3894567,3896721..3896810,3897395..3897487,3898606..3898656,3898889..3898966,3900302..3900493,3902031..3902208,3904478..3905295,3906982..3907014)
location: region:3692571-3907014:1
so has part: feature:3692571-3692625:1:exon
so has part: feature:3701131-3701245:1:exon
so has part: feature:3709081-3709273:1:exon
so has part: feature:3711874-3712386:1:exon
so has part: feature:3714242-3714364:1:exon
so has part: feature:3718476-3718667:1:exon
so has part: feature:3726747-3726878:1:exon
so has part: feature:3740043-3740273:1:exon
so has part: feature:3753652-3753774:1:exon
so has part: feature:3766030-3766221:1:exon
so has part: feature:3781836-3782005:1:exon
so has part: feature:3782995-3783169:1:exon
so has part: feature:3787811-3788006:1:exon
so has part: feature:3789140-3789306:1:exon
so has part: feature:3790733-3790852:1:exon
so has part: feature:3792553-3792744:1:exon
so has part: feature:3793149-3793298:1:exon
so has part: feature:3797151-3797265:1:exon
so has part: feature:3801018-3801133:1:exon
so has part: feature:3804693-3804815:1:exon
so has part: feature:3811429-3811623:1:exon
so has part: feature:3811724-3811839:1:exon
so has part: feature:3812667-3812733:1:exon
so has part: feature:3813349-3813458:1:exon
so has part: feature:3814545-3814614:1:exon
so has part: feature:3815204-3815293:1:exon
so has part: feature:3817544-3817636:1:exon
so has part: feature:3819875-3819986:1:exon
so has part: feature:3822189-3822379:1:exon
so has part: feature:3824304-3824405:1:exon
so has part: feature:3827687-3827829:1:exon
so has part: feature:3828423-3828522:1:exon
so has part: feature:3840481-3840724:1:exon
so has part: feature:3878114-3878406:1:exon
so has part: feature:3879907-3880077:1:exon
so has part: feature:3882855-3882950:1:exon
so has part: feature:3889329-3889477:1:exon
so has part: feature:3890964-3891030:1:exon
so has part: feature:3892623-3892726:1:exon
so has part: feature:3894498-3894567:1:exon
so has part: feature:3896721-3896810:1:exon
so has part: feature:3897395-3897487:1:exon
so has part: feature:3898606-3898656:1:exon
so has part: feature:3898889-3898966:1:exon
so has part: feature:3900302-3900493:1:exon
so has part: feature:3902031-3902208:1:exon
so has part: feature:3904478-3905295:1:exon
so has part: feature:3906982-3907014:1:exon

XP_020932802.1
type: Protein
SIO_000068: ncbiprotein

position:3907014:1
position: 3907014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3692571-3692625:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3701131-3701245:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3709081-3709273:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3711874-3712386:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3714242-3714364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3718476-3718667:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3726747-3726878:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3740043-3740273:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3753652-3753774:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3766030-3766221:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3781836-3782005:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3782995-3783169:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3787811-3788006:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3789140-3789306:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3790733-3790852:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3792553-3792744:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3793149-3793298:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3797151-3797265:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3801018-3801133:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3804693-3804815:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3811429-3811623:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3811724-3811839:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3812667-3812733:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:3813349-3813458:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:3814545-3814614:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:3815204-3815293:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:3817544-3817636:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:3819875-3819986:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:3822189-3822379:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:3824304-3824405:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:3827687-3827829:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:3828423-3828522:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:3840481-3840724:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:3878114-3878406:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:3879907-3880077:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:3882855-3882950:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:3889329-3889477:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:3890964-3891030:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:3892623-3892726:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:3894498-3894567:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:3896721-3896810:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:3897395-3897487:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:3898606-3898656:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:3898889-3898966:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:3900302-3900493:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:3902031-3902208:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:3904478-3905295:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:3906982-3907014:1:exon

FAM105A
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: FAM105A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3964300..4000673
location: region:3964300-4000673:1
so has part: feature:3964300-4000673:1:exon
subclass of: SO_0000010

100518874
type: Gene
SIO_000068: ncbigene

position:3964300:1
position: 3964300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4000673:1
position: 4000673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3964300-4000673:1:exon

FAM105A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: FAM105A
product: family with sequence similarity 105 member A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 20 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_013984696.2
SIO_010081: FAM105A
subclass of: SO_0000673
so part of: FAM105A
location: join(3964300..3964342,3990948..3991107,3991195..3991226,3991333..3991424,3992800..3992949,3996010..3996138,3997001..3997270,3998006..3999771)
location: region:3964300-3999771:1
so has part: feature:3964300-3964342:1:exon
so has part: feature:3990948-3991107:1:exon
so has part: feature:3991195-3991226:1:exon
so has part: feature:3991333-3991424:1:exon
so has part: feature:3992800-3992949:1:exon
so has part: feature:3996010-3996138:1:exon
so has part: feature:3997001-3997270:1:exon
so has part: feature:3998006-3999771:1:exon

position:3999771:1
position: 3999771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3964300-3964342:1:exon

position:3964342:1
position: 3964342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3990948-3991107:1:exon

position:3990948:1
position: 3990948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3991107:1
position: 3991107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3991195-3991226:1:exon

position:3991195:1
position: 3991195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3991226:1
position: 3991226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3991333-3991424:1:exon

position:3991333:1
position: 3991333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3991424:1
position: 3991424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3992800-3992949:1:exon

position:3992800:1
position: 3992800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3992949:1
position: 3992949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3996010-3996138:1:exon

position:3996010:1
position: 3996010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3996138:1
position: 3996138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3997001-3997270:1:exon

position:3997001:1
position: 3997001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3997270:1
position: 3997270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3998006-3999771:1:exon

position:3998006:1
position: 3998006
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FAM105A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: FAM105A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive ubiquitin thioesterase FAM105A isoform X2
translation: MQKDHWSQPGNDQVHSWTLVTSQALDTAWRVAKGSVTLAVSLLVATLYYFRRLHVYLGHRLKWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGETPRAKLMRKAYEELFWRRHIKCVRQVRRDNYDALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVELLKAQWTEFSGMKDYHKRGSMCNILFSDAILEYKLYEALKFIMLYQVTEVYEQMKTKKVIPSLFRLLFTRESSSDPLSFMMNHLNSVGDTCGLEQIDMFILGYSLEVKIKVFRLFKFNSRDFEVCYPEESLREWPEISLLTENDRHYHIPVF
SIO_010081: FAM105A
subclass of: SO_0000673
so part of: FAM105A
location: join(3964315..3964342,3990948..3991107,3991195..3991226,3991333..3991424,3992800..3992949,3996010..3996138,3997001..3997270,3998006..3998179)
location: region:3964315-3998179:1
so has part: feature:3964315-3964342:1:exon
so has part: feature:3990948-3991107:1:exon
so has part: feature:3991195-3991226:1:exon
so has part: feature:3991333-3991424:1:exon
so has part: feature:3992800-3992949:1:exon
so has part: feature:3996010-3996138:1:exon
so has part: feature:3997001-3997270:1:exon
so has part: feature:3998006-3998179:1:exon

XP_013840150.1
type: Protein
SIO_000068: ncbiprotein

position:3964315:1
position: 3964315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3998179:1
position: 3998179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3964315-3964342:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3990948-3991107:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3991195-3991226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3991333-3991424:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3992800-3992949:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3996010-3996138:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3997001-3997270:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998006-3998179:1:exon

FAM105A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: FAM105A
product: family with sequence similarity 105 member A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 ESTs, 167 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 169 samples with support for all annotated introns
transcript id: XM_003133840.4
SIO_010081: FAM105A
subclass of: SO_0000673
so part of: FAM105A
location: join(3969869..3970084,3990948..3991107,3991195..3991226,3991333..3991424,3992800..3992949,3996010..3996138,3997001..3997270,3998006..4000673)
location: region:3969869-4000673:1
so has part: feature:3969869-3970084:1:exon
so has part: feature:3990948-3991107:1:exon
so has part: feature:3991195-3991226:1:exon
so has part: feature:3991333-3991424:1:exon
so has part: feature:3992800-3992949:1:exon
so has part: feature:3996010-3996138:1:exon
so has part: feature:3997001-3997270:1:exon
so has part: feature:3998006-4000673:1:exon

position:3969869:1
position: 3969869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3969869-3970084:1:exon

position:3970084:1
position: 3970084
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3990948-3991107:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3991195-3991226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3991333-3991424:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3992800-3992949:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3996010-3996138:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3997001-3997270:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998006-4000673:1:exon

FAM105A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: FAM105A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive ubiquitin thioesterase FAM105A isoform X1
translation: MAARRSAAHERDRERPRAPATGNDQVHSWTLVTSQALDTAWRVAKGSVTLAVSLLVATLYYFRRLHVYLGHRLKWWIGYLQRKFKRNLSVEAEVDLLSYCAREWKGETPRAKLMRKAYEELFWRRHIKCVRQVRRDNYDALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVELLKAQWTEFSGMKDYHKRGSMCNILFSDAILEYKLYEALKFIMLYQVTEVYEQMKTKKVIPSLFRLLFTRESSSDPLSFMMNHLNSVGDTCGLEQIDMFILGYSLEVKIKVFRLFKFNSRDFEVCYPEESLREWPEISLLTENDRHYHIPVF
SIO_010081: FAM105A
subclass of: SO_0000673
so part of: FAM105A
location: join(3970021..3970084,3990948..3991107,3991195..3991226,3991333..3991424,3992800..3992949,3996010..3996138,3997001..3997270,3998006..3998179)
location: region:3970021-3998179:1
so has part: feature:3970021-3970084:1:exon
so has part: feature:3990948-3991107:1:exon
so has part: feature:3991195-3991226:1:exon
so has part: feature:3991333-3991424:1:exon
so has part: feature:3992800-3992949:1:exon
so has part: feature:3996010-3996138:1:exon
so has part: feature:3997001-3997270:1:exon
so has part: feature:3998006-3998179:1:exon

XP_003133888.1
type: Protein
SIO_000068: ncbiprotein

position:3970021:1
position: 3970021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3970021-3970084:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3990948-3991107:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3991195-3991226:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3991333-3991424:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3992800-3992949:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3996010-3996138:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3997001-3997270:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3998006-3998179:1:exon

LOC110257250
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257250
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3996145..4062956)
location: region:3996145-4062956:-1
so has part: feature:3996145-4062956:-1:exon
subclass of: SO_0000011

110257250
type: Gene
SIO_000068: ncbigene

position:3996145:-1
position: 3996145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4062956:-1
position: 4062956
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3996145-4062956:-1:exon

LOC110257250
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257250
product: uncharacterized LOC110257250, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_002339614.1
SIO_010081: LOC110257250
subclass of: SO_0000673
so part of: LOC110257250
location: complement(join(3996145..3996573,4002631..4002731,4048902..4048981,4054307..4054354,4054471..4054578,4055225..4055330,4062471..4062956))
location: region:3996145-4062956:-1
so has part: feature:4062471-4062956:-1:exon
so has part: feature:4055225-4055330:-1:exon
so has part: feature:4054471-4054578:-1:exon
so has part: feature:4054307-4054354:-1:exon
so has part: feature:4048902-4048981:-1:exon
so has part: feature:4002631-4002731:-1:exon
so has part: feature:3996145-3996573:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4062471-4062956:-1:exon

position:4062471:-1
position: 4062471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4055225-4055330:-1:exon

position:4055225:-1
position: 4055225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4055330:-1
position: 4055330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4054471-4054578:-1:exon

position:4054471:-1
position: 4054471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4054578:-1
position: 4054578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4054307-4054354:-1:exon

position:4054307:-1
position: 4054307
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4054354:-1
position: 4054354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4048902-4048981:-1:exon

position:4048902:-1
position: 4048902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4048981:-1
position: 4048981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4002631-4002731:-1:exon

position:4002631:-1
position: 4002631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4002731:-1
position: 4002731
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3996145-3996573:-1:exon

position:3996573:-1
position: 3996573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC110257250
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257250
product: uncharacterized LOC110257250, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_002339612.1
SIO_010081: LOC110257250
subclass of: SO_0000673
so part of: LOC110257250
location: complement(join(3996145..3996573,4002631..4002731,4048902..4048981,4054307..4054354,4054471..4054578,4055225..4055330,4062776..4062954))
location: region:3996145-4062954:-1
so has part: feature:4062776-4062954:-1:exon
so has part: feature:4055225-4055330:-1:exon
so has part: feature:4054471-4054578:-1:exon
so has part: feature:4054307-4054354:-1:exon
so has part: feature:4048902-4048981:-1:exon
so has part: feature:4002631-4002731:-1:exon
so has part: feature:3996145-3996573:-1:exon

position:4062954:-1
position: 4062954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4062776-4062954:-1:exon

position:4062776:-1
position: 4062776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4055225-4055330:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4054471-4054578:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4054307-4054354:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4048902-4048981:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4002631-4002731:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3996145-3996573:-1:exon

LOC110257250
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257250
product: uncharacterized LOC110257250, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_002339613.1
SIO_010081: LOC110257250
subclass of: SO_0000673
so part of: LOC110257250
location: complement(join(3996145..3996573,4002631..4002731,4048902..4048981,4054471..4054578,4055225..4055330,4062776..4062953))
location: region:3996145-4062953:-1
so has part: feature:4062776-4062953:-1:exon
so has part: feature:4055225-4055330:-1:exon
so has part: feature:4054471-4054578:-1:exon
so has part: feature:4048902-4048981:-1:exon
so has part: feature:4002631-4002731:-1:exon
so has part: feature:3996145-3996573:-1:exon

position:4062953:-1
position: 4062953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4062776-4062953:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4055225-4055330:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4054471-4054578:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4048902-4048981:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4002631-4002731:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3996145-3996573:-1:exon

OTULIN
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4063037..4097112
location: region:4063037-4097112:1
so has part: feature:4063037-4097112:1:exon
subclass of: SO_0000010

100519060
type: Gene
SIO_000068: ncbigene

position:4063037:1
position: 4063037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4097112:1
position: 4097112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4063037-4097112:1:exon

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 45 ESTs, 110 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 179 samples with support for all annotated introns
transcript id: XM_003133841.4
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: join(4063037..4063356,4071307..4071383,4075999..4076093,4079438..4079581,4086049..4086174,4088994..4089263,4091684..4097112)
location: region:4063037-4097112:1
so has part: feature:4063037-4063356:1:exon
so has part: feature:4071307-4071383:1:exon
so has part: feature:4075999-4076093:1:exon
so has part: feature:4079438-4079581:1:exon
so has part: feature:4086049-4086174:1:exon
so has part: feature:4088994-4089263:1:exon
so has part: feature:4091684-4097112:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4063037-4063356:1:exon

position:4063356:1
position: 4063356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4071307-4071383:1:exon

position:4071307:1
position: 4071307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4071383:1
position: 4071383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4075999-4076093:1:exon

position:4075999:1
position: 4075999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4076093:1
position: 4076093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4079438-4079581:1:exon

position:4079438:1
position: 4079438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4079581:1
position: 4079581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4086049-4086174:1:exon

position:4086049:1
position: 4086049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4086174:1
position: 4086174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4088994-4089263:1:exon

position:4088994:1
position: 4088994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4089263:1
position: 4089263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4091684-4097112:1:exon

position:4091684:1
position: 4091684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 ESTs, 96 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
transcript id: XM_013984697.2
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: join(4063050..4063356,4071307..4071383,4075999..4076093,4086049..4086174,4088994..4089263,4091684..4097112)
location: region:4063050-4097112:1
so has part: feature:4063050-4063356:1:exon
so has part: feature:4071307-4071383:1:exon
so has part: feature:4075999-4076093:1:exon
so has part: feature:4086049-4086174:1:exon
so has part: feature:4088994-4089263:1:exon
so has part: feature:4091684-4097112:1:exon

position:4063050:1
position: 4063050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4063050-4063356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4071307-4071383:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4075999-4076093:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4086049-4086174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4088994-4089263:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4091684-4097112:1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X1
translation: MRRGTMPQPGAWPGASCAEKPAWEAGAAAPEGGKAAAGGPPRAAMRCAAEHEEDMYRAADEIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKKGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQPAALPSWLEDPELTLLPEKLVSKYSWIKQWKLGLKFEGKSEDLVDKIKESLALLRKKWAGLAELRTAEARQIACDELFTNEEEEYSLYEAVKFLMLNRAIELYDDKEKGKDVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITIYPTDPPRDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: join(4063205..4063356,4071307..4071383,4075999..4076093,4079438..4079581,4086049..4086174,4088994..4089263,4091684..4091878)
location: region:4063205-4091878:1
so has part: feature:4063205-4063356:1:exon
so has part: feature:4071307-4071383:1:exon
so has part: feature:4075999-4076093:1:exon
so has part: feature:4079438-4079581:1:exon
so has part: feature:4086049-4086174:1:exon
so has part: feature:4088994-4089263:1:exon
so has part: feature:4091684-4091878:1:exon

XP_003133889.1
type: Protein
SIO_000068: ncbiprotein

position:4063205:1
position: 4063205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4091878:1
position: 4091878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4063205-4063356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4071307-4071383:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4075999-4076093:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4079438-4079581:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4086049-4086174:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4088994-4089263:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4091684-4091878:1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X2
translation: MRRGTMPQPGAWPGASCAEKPAWEAGAAAPEGGKAAAGGPPRAAMRCAAEHEEDMYRAADEIEKEKELLIHERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKKLPEKLVSKYSWIKQWKLGLKFEGKSEDLVDKIKESLALLRKKWAGLAELRTAEARQIACDELFTNEEEEYSLYEAVKFLMLNRAIELYDDKEKGKDVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITIYPTDPPRDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: join(4063205..4063356,4071307..4071383,4075999..4076093,4086049..4086174,4088994..4089263,4091684..4091878)
location: region:4063205-4091878:1
so has part: feature:4063205-4063356:1:exon
so has part: feature:4071307-4071383:1:exon
so has part: feature:4075999-4076093:1:exon
so has part: feature:4086049-4086174:1:exon
so has part: feature:4088994-4089263:1:exon
so has part: feature:4091684-4091878:1:exon

XP_013840151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4063205-4063356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4071307-4071383:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4075999-4076093:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4086049-4086174:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4088994-4089263:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4091684-4091878:1:exon

ANKH
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: ANKH
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4095582..4271073)
location: region:4095582-4271073:-1
so has part: feature:4095582-4271073:-1:exon
subclass of: SO_0000010

100624458
type: Gene
SIO_000068: ncbigene

position:4095582:-1
position: 4095582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4271073:-1
position: 4271073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4095582-4271073:-1:exon

ANKH
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ANKH
product: ANKH inorganic pyrophosphate transport regulator
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 72 ESTs, 214 long SRA reads, 5 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 172 samples with support for all annotated introns
transcript id: XM_003359727.5
SIO_010081: ANKH
subclass of: SO_0000673
so part of: ANKH
location: complement(join(4095582..4107163,4107549..4107648,4108270..4108393,4110398..4110527,4141884..4141979,4146619..4146711,4149018..4149152,4152470..4152640,4159083..4159166,4162943..4163061,4175428..4175644,4270534..4271073))
location: region:4095582-4271073:-1
so has part: feature:4270534-4271073:-1:exon
so has part: feature:4175428-4175644:-1:exon
so has part: feature:4162943-4163061:-1:exon
so has part: feature:4159083-4159166:-1:exon
so has part: feature:4152470-4152640:-1:exon
so has part: feature:4149018-4149152:-1:exon
so has part: feature:4146619-4146711:-1:exon
so has part: feature:4141884-4141979:-1:exon
so has part: feature:4110398-4110527:-1:exon
so has part: feature:4108270-4108393:-1:exon
so has part: feature:4107549-4107648:-1:exon
so has part: feature:4095582-4107163:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4270534-4271073:-1:exon

position:4270534:-1
position: 4270534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4175428-4175644:-1:exon

position:4175428:-1
position: 4175428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4175644:-1
position: 4175644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4162943-4163061:-1:exon

position:4162943:-1
position: 4162943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4163061:-1
position: 4163061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4159083-4159166:-1:exon

position:4159083:-1
position: 4159083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4159166:-1
position: 4159166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4152470-4152640:-1:exon

position:4152470:-1
position: 4152470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4152640:-1
position: 4152640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4149018-4149152:-1:exon

position:4149018:-1
position: 4149018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4149152:-1
position: 4149152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4146619-4146711:-1:exon

position:4146619:-1
position: 4146619
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4146711:-1
position: 4146711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4141884-4141979:-1:exon

position:4141884:-1
position: 4141884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4141979:-1
position: 4141979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4110398-4110527:-1:exon

position:4110398:-1
position: 4110398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4110527:-1
position: 4110527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4108270-4108393:-1:exon

position:4108270:-1
position: 4108270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4108393:-1
position: 4108393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4107549-4107648:-1:exon

position:4107549:-1
position: 4107549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4107648:-1
position: 4107648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4095582-4107163:-1:exon

position:4107163:-1
position: 4107163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ANKH
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ANKH
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: progressive ankylosis protein homolog
translation: MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMKFFTGPMSDFKNVGLVFVNSKRDRTKAVLCMVVAGAVAAVFHTLIAYSDLGYYIINKLHHVDESVGNKTRRAFLYLAAFPFMDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILLHSHLECREPLLIPILSLYMGALVRCTTLCLGYYKNIHDIIPDRSGPELGGDATIRKMLSFWWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILTATYPVGHMPYGWLTEIRAVYPAFDKNNPSNKAVSTSNTVTAAHIKKFTFVCMALSLTLCFVMFWTPNVSEKILIDIIGVDFAFAELCVVPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLITSLVVLPYLGVHGATLGVGSLLAGFVGESTMVAIAACYVYRKQKKKMENESAVEGEDSAMTDIPPAEEGTDVVEMREETE
SIO_010081: ANKH
subclass of: SO_0000673
so part of: ANKH
location: complement(join(4107050..4107163,4107549..4107648,4108270..4108393,4110398..4110527,4141884..4141979,4146619..4146711,4149018..4149152,4152470..4152640,4159083..4159166,4162943..4163061,4175428..4175644,4270534..4270629))
location: region:4107050-4270629:-1
so has part: feature:4270534-4270629:-1:exon
so has part: feature:4175428-4175644:-1:exon
so has part: feature:4162943-4163061:-1:exon
so has part: feature:4159083-4159166:-1:exon
so has part: feature:4152470-4152640:-1:exon
so has part: feature:4149018-4149152:-1:exon
so has part: feature:4146619-4146711:-1:exon
so has part: feature:4141884-4141979:-1:exon
so has part: feature:4110398-4110527:-1:exon
so has part: feature:4108270-4108393:-1:exon
so has part: feature:4107549-4107648:-1:exon
so has part: feature:4107050-4107163:-1:exon

XP_003359775.2
type: Protein
SIO_000068: ncbiprotein

position:4107050:-1
position: 4107050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4270629:-1
position: 4270629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4270534-4270629:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4175428-4175644:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4162943-4163061:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4159083-4159166:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4152470-4152640:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4149018-4149152:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4146619-4146711:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4141884-4141979:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4110398-4110527:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4108270-4108393:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4107549-4107648:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4107050-4107163:-1:exon

LOC100519745
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100519745
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4590568..4591325)
location: region:4590568-4591325:-1
so has part: feature:4590568-4591325:-1:exon

100519745
type: Gene
SIO_000068: ncbigene

position:4590568:-1
position: 4590568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4591325:-1
position: 4591325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4590568-4591325:-1:exon

LOC100519745
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100519745
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
pseudo: true
SIO_010081: LOC100519745
subclass of: SO_0000673
so part of: LOC100519745
location: complement(4590568..4591325)
location: region:4590568-4591325:-1
so has part: feature:4590568-4591325:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4590568-4591325:-1:exon

FBXL7
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: FBXL7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4784452..5194193
location: region:4784452-5194193:1
so has part: feature:4784452-5194193:1:exon
subclass of: SO_0000010

100521047
type: Gene
SIO_000068: ncbigene

position:4784452:1
position: 4784452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5194193:1
position: 5194193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4784452-5194193:1:exon

FBXL7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: FBXL7
product: F-box and leucine rich repeat protein 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 24 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 151 samples with support for all annotated introns
transcript id: XM_003133850.6
SIO_010081: FBXL7
subclass of: SO_0000673
so part of: FBXL7
location: join(4784452..4785000,4897376..4897465,5183713..5184324,5190849..5194193)
location: region:4784452-5194193:1
so has part: feature:4784452-4785000:1:exon
so has part: feature:4897376-4897465:1:exon
so has part: feature:5183713-5184324:1:exon
so has part: feature:5190849-5194193:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4784452-4785000:1:exon

position:4785000:1
position: 4785000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4897376-4897465:1:exon

position:4897376:1
position: 4897376
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4897465:1
position: 4897465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5183713-5184324:1:exon

position:5183713:1
position: 5183713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5184324:1
position: 5184324
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5190849-5194193:1:exon

position:5190849:1
position: 5190849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FBXL7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: FBXL7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 7
translation: MECPGDGGHDGSRMGANNGKQYGSEGKGSSSISSDVSSSTDHTPTQAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIERLPDHAMVQVFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVSVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLMIYCTSIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCAKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQMLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
SIO_010081: FBXL7
subclass of: SO_0000673
so part of: FBXL7
location: join(4784925..4785000,4897376..4897465,5183713..5184324,5190849..5191585)
location: region:4784925-5191585:1
so has part: feature:4784925-4785000:1:exon
so has part: feature:4897376-4897465:1:exon
so has part: feature:5183713-5184324:1:exon
so has part: feature:5190849-5191585:1:exon

XP_003133898.4
type: Protein
SIO_000068: ncbiprotein

position:4784925:1
position: 4784925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5191585:1
position: 5191585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4784925-4785000:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4897376-4897465:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5183713-5184324:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5190849-5191585:1:exon

LOC110257234
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257234
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4923967..4929954
location: region:4923967-4929954:1
so has part: feature:4923967-4929954:1:exon
subclass of: SO_0000011

110257234
type: Gene
SIO_000068: ncbigene

position:4923967:1
position: 4923967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4929954:1
position: 4929954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4923967-4929954:1:exon

LOC110257234
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257234
product: uncharacterized LOC110257234
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_002339571.1
SIO_010081: LOC110257234
subclass of: SO_0000673
so part of: LOC110257234
location: join(4923967..4924106,4928171..4929954)
location: region:4923967-4929954:1
so has part: feature:4923967-4924106:1:exon
so has part: feature:4928171-4929954:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4923967-4924106:1:exon

position:4924106:1
position: 4924106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4928171-4929954:1:exon

position:4928171:1
position: 4928171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102165834
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC102165834
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4972383..4987555)
location: region:4972383-4987555:-1
so has part: feature:4972383-4987555:-1:exon
subclass of: SO_0000011

102165834
type: Gene
SIO_000068: ncbigene

position:4972383:-1
position: 4972383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4987555:-1
position: 4987555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4972383-4987555:-1:exon

LOC102165834
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102165834
product: uncharacterized LOC102165834, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_002339570.1
SIO_010081: LOC102165834
subclass of: SO_0000673
so part of: LOC102165834
location: complement(join(4972383..4972711,4973962..4974070,4984002..4984097,4985281..4987555))
location: region:4972383-4987555:-1
so has part: feature:4985281-4987555:-1:exon
so has part: feature:4984002-4984097:-1:exon
so has part: feature:4973962-4974070:-1:exon
so has part: feature:4972383-4972711:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4985281-4987555:-1:exon

position:4985281:-1
position: 4985281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4984002-4984097:-1:exon

position:4984002:-1
position: 4984002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4984097:-1
position: 4984097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4973962-4974070:-1:exon

position:4973962:-1
position: 4973962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4974070:-1
position: 4974070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4972383-4972711:-1:exon

position:4972711:-1
position: 4972711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102165834
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102165834
product: uncharacterized LOC102165834, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_002339569.1
SIO_010081: LOC102165834
subclass of: SO_0000673
so part of: LOC102165834
location: complement(join(4972383..4972711,4984002..4984097,4985281..4987553))
location: region:4972383-4987553:-1
so has part: feature:4985281-4987553:-1:exon
so has part: feature:4984002-4984097:-1:exon
so has part: feature:4972383-4972711:-1:exon

position:4987553:-1
position: 4987553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4985281-4987553:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4984002-4984097:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4972383-4972711:-1:exon

LOC102165834
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102165834
product: uncharacterized LOC102165834, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 long SRA reads, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_002339568.1
SIO_010081: LOC102165834
subclass of: SO_0000673
so part of: LOC102165834
location: complement(join(4973474..4974070,4984002..4984097,4985281..4987554))
location: region:4973474-4987554:-1
so has part: feature:4985281-4987554:-1:exon
so has part: feature:4984002-4984097:-1:exon
so has part: feature:4973474-4974070:-1:exon

position:4973474:-1
position: 4973474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4987554:-1
position: 4987554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4985281-4987554:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4984002-4984097:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4973474-4974070:-1:exon

LOC102165834
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102165834
product: uncharacterized LOC102165834, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XR_002339567.1
SIO_010081: LOC102165834
subclass of: SO_0000673
so part of: LOC102165834
location: complement(join(4983728..4984097,4985281..4987549))
location: region:4983728-4987549:-1
so has part: feature:4985281-4987549:-1:exon
so has part: feature:4983728-4984097:-1:exon

position:4983728:-1
position: 4983728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4987549:-1
position: 4987549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4985281-4987549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4983728-4984097:-1:exon

LOC100521410
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100521410
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5311437..5315143)
location: region:5311437-5315143:-1
so has part: feature:5311437-5315143:-1:exon
subclass of: SO_0000010

100521410
type: Gene
SIO_000068: ncbigene

position:5311437:-1
position: 5311437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5315143:-1
position: 5315143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5311437-5315143:-1:exon

LOC100521410
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: LOC100521410
product: nuclear envelope pore membrane protein POM 121C-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 4 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
transcript id: XM_021077087.1
SIO_010081: LOC100521410
subclass of: SO_0000673
so part of: LOC100521410
location: complement(join(5311437..5314969,5315125..5315143))
location: region:5311437-5315143:-1
so has part: feature:5315125-5315143:-1:exon
so has part: feature:5311437-5314969:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5315125-5315143:-1:exon

position:5315125:-1
position: 5315125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5311437-5314969:-1:exon

position:5314969:-1
position: 5314969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100521410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: LOC100521410
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 4 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(5314771..5314773),aa:OTHER)
product: LOW QUALITY PROTEIN: nuclear envelope pore membrane protein POM 121C-like
translation: MSPTSATQFRLALPGLALPLVPAAAVTRAWQAVGVPRSGGDSGASPDVHAPSEPRWFGTRAATEHCSPCLRXSQQ
SIO_010081: LOC100521410
subclass of: SO_0000673
so part of: LOC100521410
location: complement(join(5311437..5314969,5315125..5315143))
location: region:5311437-5315143:-1
so has part: feature:5315125-5315143:-1:exon
so has part: feature:5311437-5314969:-1:exon

XP_020932746.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5315125-5315143:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5311437-5314969:-1:exon

MARCH11
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: MARCH11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5345490..5459893)
location: region:5345490-5459893:-1
so has part: feature:5345490-5459893:-1:exon
subclass of: SO_0000010

100521230
type: Gene
SIO_000068: ncbigene

position:5345490:-1
position: 5345490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5459893:-1
position: 5459893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5345490-5459893:-1:exon

MARCH11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: MARCH11
product: membrane associated ring-CH-type finger 11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XM_021076811.1
SIO_010081: MARCH11
subclass of: SO_0000673
so part of: MARCH11
location: complement(join(5345490..5346614,5371355..5371547,5457928..5458083,5459253..5459893))
location: region:5345490-5459893:-1
so has part: feature:5459253-5459893:-1:exon
so has part: feature:5457928-5458083:-1:exon
so has part: feature:5371355-5371547:-1:exon
so has part: feature:5345490-5346614:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5459253-5459893:-1:exon

position:5459253:-1
position: 5459253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5457928-5458083:-1:exon

position:5457928:-1
position: 5457928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5458083:-1
position: 5458083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5371355-5371547:-1:exon

position:5371355:-1
position: 5371355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5371547:-1
position: 5371547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5345490-5346614:-1:exon

position:5346614:-1
position: 5346614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MARCH11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: MARCH11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MARCH11
translation: MSSEGGHSGSRRRGAESRDAEPPPPPPPPPPPPPGEPASVPAPPRYLPPLPAPPWSPERSAGPDEQPAEVVQRREGAEELPLPPPLGPLSPAGQEVSVAGDSGEGPRRPPEATVPEEAAGKGGPGEPEAGAGGEGDRRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAMWQRKDILFQICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKASDIEESSRGESSTSRTLWLPLTALRNRNLVHPTQLTSPRFQCGYVLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV
SIO_010081: MARCH11
subclass of: SO_0000673
so part of: MARCH11
location: complement(join(5346292..5346614,5371355..5371547,5457928..5458083,5459253..5459804))
location: region:5346292-5459804:-1
so has part: feature:5459253-5459804:-1:exon
so has part: feature:5457928-5458083:-1:exon
so has part: feature:5371355-5371547:-1:exon
so has part: feature:5346292-5346614:-1:exon

XP_020932470.1
type: Protein
SIO_000068: ncbiprotein

position:5346292:-1
position: 5346292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5459804:-1
position: 5459804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5459253-5459804:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5457928-5458083:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5371355-5371547:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5346292-5346614:-1:exon

LOC110257306
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257306
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 5503780..5510307
location: region:5503780-5510307:1
so has part: feature:5503780-5510307:1:exon
subclass of: SO_0000011

110257306
type: Gene
SIO_000068: ncbigene

position:5503780:1
position: 5503780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5510307:1
position: 5510307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5503780-5510307:1:exon

LOC110257306
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257306
product: uncharacterized LOC110257306
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_002339758.1
SIO_010081: LOC110257306
subclass of: SO_0000673
so part of: LOC110257306
location: join(5503780..5503894,5509355..5509485,5510142..5510307)
location: region:5503780-5510307:1
so has part: feature:5503780-5503894:1:exon
so has part: feature:5509355-5509485:1:exon
so has part: feature:5510142-5510307:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5503780-5503894:1:exon

position:5503894:1
position: 5503894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5509355-5509485:1:exon

position:5509355:1
position: 5509355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5509485:1
position: 5509485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5510142-5510307:1:exon

position:5510142:1
position: 5510142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC110257328
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257328
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5550549..5550911
location: region:5550549-5550911:1
so has part: feature:5550549-5550911:1:exon

110257328
type: Gene
SIO_000068: ncbigene

position:5550549:1
position: 5550549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5550911:1
position: 5550911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5550549-5550911:1:exon

LOC110257328
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC110257328
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC110257328
subclass of: SO_0000673
so part of: LOC110257328
location: 5550549..5550911
location: region:5550549-5550911:1
so has part: feature:5550549-5550911:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5550549-5550911:1:exon

ZNF622
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: ZNF622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5699740..5714824)
location: region:5699740-5714824:-1
so has part: feature:5699740-5714824:-1:exon
subclass of: SO_0000010

100521757
type: Gene
SIO_000068: ncbigene

position:5699740:-1
position: 5699740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5714824:-1
position: 5714824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5699740-5714824:-1:exon

ZNF622
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ZNF622
product: zinc finger protein 622, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 16 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 181 samples with support for all annotated introns
transcript id: XM_021076700.1
SIO_010081: ZNF622
subclass of: SO_0000673
so part of: ZNF622
location: complement(join(5699740..5700007,5701249..5701392,5708322..5708434,5712359..5712521,5712789..5713052,5713765..5714824))
location: region:5699740-5714824:-1
so has part: feature:5713765-5714824:-1:exon
so has part: feature:5712789-5713052:-1:exon
so has part: feature:5712359-5712521:-1:exon
so has part: feature:5708322-5708434:-1:exon
so has part: feature:5701249-5701392:-1:exon
so has part: feature:5699740-5700007:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5713765-5714824:-1:exon

position:5713765:-1
position: 5713765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5712789-5713052:-1:exon

position:5712789:-1
position: 5712789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5713052:-1
position: 5713052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5712359-5712521:-1:exon

position:5712359:-1
position: 5712359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5712521:-1
position: 5712521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5708322-5708434:-1:exon

position:5708322:-1
position: 5708322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5708434:-1
position: 5708434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5701249-5701392:-1:exon

position:5701249:-1
position: 5701249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5701392:-1
position: 5701392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5699740-5700007:-1:exon

position:5700007:-1
position: 5700007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZNF622
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ZNF622
product: zinc finger protein 622, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 54 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 181 samples with support for all annotated introns
transcript id: XM_021076701.1
SIO_010081: ZNF622
subclass of: SO_0000673
so part of: ZNF622
location: complement(join(5699740..5700007,5701249..5701392,5708322..5708434,5712359..5712521,5712789..5713049,5713765..5714820))
location: region:5699740-5714820:-1
so has part: feature:5713765-5714820:-1:exon
so has part: feature:5712789-5713049:-1:exon
so has part: feature:5712359-5712521:-1:exon
so has part: feature:5708322-5708434:-1:exon
so has part: feature:5701249-5701392:-1:exon
so has part: feature:5699740-5700007:-1:exon

position:5714820:-1
position: 5714820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5713765-5714820:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5712789-5713049:-1:exon

position:5713049:-1
position: 5713049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5712359-5712521:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5708322-5708434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5701249-5701392:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5699740-5700007:-1:exon

ZNF622
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ZNF622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 622 isoform X2
translation: MATYTCNTCRVVLVDAEAQRAHYKTDWHRYNLRRKVAGMAPVSAEGFQERVRAQRALAEPESKGAATYCTVCSKKFASFKAYENHLKSRRHVELEKRAVSRKVAILNEKNLEKGLGVDGVDKDAVNAAIQQVIKAQPSTSPKKAAPALEAEFRSPVSVAAGGRGAHQRDPAEKPPRLQWFEQQARKLAKQQGEEESEEELDDGDDWEDIESDEEVECEDGEALDQEEEQDAEEEEAGGSPPLGAIPITDCLFCPHHSSSLVKNVAHMTKVHSFFLPDVEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMHDRSHCKLFTDGDALLEFADFYDFRSSYPDHKEGEDPDETEALPSEKPLGYDDDTMELILPSGARVGHRSLMRYYKQRFGLSRAVAVARNQKAVGRVLQQYRALGWTGSTGAALVRQRDMQYVQRMKSKWLLKMGVKNNATKQMHFRPQVMF
SIO_010081: ZNF622
subclass of: SO_0000673
so part of: ZNF622
location: complement(join(5699880..5700007,5701249..5701392,5708322..5708434,5712359..5712521,5712789..5713049,5713765..5714377))
location: region:5699880-5714377:-1
so has part: feature:5713765-5714377:-1:exon
so has part: feature:5712789-5713049:-1:exon
so has part: feature:5712359-5712521:-1:exon
so has part: feature:5708322-5708434:-1:exon
so has part: feature:5701249-5701392:-1:exon
so has part: feature:5699880-5700007:-1:exon

XP_020932360.1
type: Protein
SIO_000068: ncbiprotein

position:5699880:-1
position: 5699880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5714377:-1
position: 5714377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5713765-5714377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5712789-5713049:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5712359-5712521:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5708322-5708434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5701249-5701392:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5699880-5700007:-1:exon

ZNF622
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ZNF622
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein 622 isoform X1
translation: MATYTCNTCRVVLVDAEAQRAHYKTDWHRYNLRRKVAGMAPVSAEGFQERVRAQRALAEPESKGAATYCTVCSKKFASFKAYENHLKSRRHVELEKRAVSRKVAILNEKNLEKGLGVDGVDKDAVNAAIQQVIKAQPSTSPKKAAPALEAEFRSPVSVAAGGRGAHQRDPAEKPPRLQWFEQQARKLAKQQGEEESEEELDDGDEDWEDIESDEEVECEDGEALDQEEEQDAEEEEAGGSPPLGAIPITDCLFCPHHSSSLVKNVAHMTKVHSFFLPDVEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMHDRSHCKLFTDGDALLEFADFYDFRSSYPDHKEGEDPDETEALPSEKPLGYDDDTMELILPSGARVGHRSLMRYYKQRFGLSRAVAVARNQKAVGRVLQQYRALGWTGSTGAALVRQRDMQYVQRMKSKWLLKMGVKNNATKQMHFRPQVMF
SIO_010081: ZNF622
subclass of: SO_0000673
so part of: ZNF622
location: complement(join(5699880..5700007,5701249..5701392,5708322..5708434,5712359..5712521,5712789..5713052,5713765..5714377))
location: region:5699880-5714377:-1
so has part: feature:5713765-5714377:-1:exon
so has part: feature:5712789-5713052:-1:exon
so has part: feature:5712359-5712521:-1:exon
so has part: feature:5708322-5708434:-1:exon
so has part: feature:5701249-5701392:-1:exon
so has part: feature:5699880-5700007:-1:exon

XP_020932359.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5713765-5714377:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5712789-5713052:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5712359-5712521:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5708322-5708434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5701249-5701392:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5699880-5700007:-1:exon

RETREG1
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: RETREG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5726493..5879461)
location: region:5726493-5879461:-1
so has part: feature:5726493-5879461:-1:exon
subclass of: SO_0000010

100625174
type: Gene
SIO_000068: ncbigene

position:5726493:-1
position: 5726493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5879461:-1
position: 5879461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5726493-5879461:-1:exon

RETREG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: RETREG1
product: reticulophagy regulator 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 137 ESTs, 24 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 162 samples with support for all annotated introns
transcript id: XM_003483804.4
SIO_010081: RETREG1
subclass of: SO_0000673
so part of: RETREG1
location: complement(join(5726493..5728715,5729696..5729822,5730066..5730130,5731198..5731335,5739895..5739979,5742342..5742468,5829551..5829581,5835867..5835973,5878992..5879461))
location: region:5726493-5879461:-1
so has part: feature:5878992-5879461:-1:exon
so has part: feature:5835867-5835973:-1:exon
so has part: feature:5829551-5829581:-1:exon
so has part: feature:5742342-5742468:-1:exon
so has part: feature:5739895-5739979:-1:exon
so has part: feature:5731198-5731335:-1:exon
so has part: feature:5730066-5730130:-1:exon
so has part: feature:5729696-5729822:-1:exon
so has part: feature:5726493-5728715:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5878992-5879461:-1:exon

position:5878992:-1
position: 5878992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5835867-5835973:-1:exon

position:5835867:-1
position: 5835867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5835973:-1
position: 5835973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5829551-5829581:-1:exon

position:5829551:-1
position: 5829551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5829581:-1
position: 5829581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5742342-5742468:-1:exon

position:5742342:-1
position: 5742342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5742468:-1
position: 5742468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5739895-5739979:-1:exon

position:5739895:-1
position: 5739895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5739979:-1
position: 5739979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5731198-5731335:-1:exon

position:5731198:-1
position: 5731198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5731335:-1
position: 5731335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5730066-5730130:-1:exon

position:5730066:-1
position: 5730066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5730130:-1
position: 5730130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5729696-5729822:-1:exon

position:5729696:-1
position: 5729696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5729822:-1
position: 5729822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5726493-5728715:-1:exon

position:5728715:-1
position: 5728715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RETREG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: RETREG1
product: reticulophagy regulator 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 88 ESTs, 19 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005672396.3
SIO_010081: RETREG1
subclass of: SO_0000673
so part of: RETREG1
location: complement(join(5726493..5728715,5729696..5729822,5730066..5730130,5731198..5731335,5739895..5739979,5742342..5742468,5776022..5776134,5776453..5776646))
location: region:5726493-5776646:-1
so has part: feature:5776453-5776646:-1:exon
so has part: feature:5776022-5776134:-1:exon
so has part: feature:5742342-5742468:-1:exon
so has part: feature:5739895-5739979:-1:exon
so has part: feature:5731198-5731335:-1:exon
so has part: feature:5730066-5730130:-1:exon
so has part: feature:5729696-5729822:-1:exon
so has part: feature:5726493-5728715:-1:exon

position:5776646:-1
position: 5776646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5776453-5776646:-1:exon

position:5776453:-1
position: 5776453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5776022-5776134:-1:exon

position:5776022:-1
position: 5776022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5776134:-1
position: 5776134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5742342-5742468:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5739895-5739979:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5731198-5731335:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5730066-5730130:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5729696-5729822:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5726493-5728715:-1:exon

RETREG1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: RETREG1
product: reticulophagy regulator 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 133 ESTs, 47 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 165 samples with support for all annotated introns
transcript id: XM_003359728.5
SIO_010081: RETREG1
subclass of: SO_0000673
so part of: RETREG1
location: complement(join(5726501..5728715,5729696..5729822,5730066..5730130,5731198..5731335,5739895..5739979,5742342..5742468,5776022..5776875))
location: region:5726501-5776875:-1
so has part: feature:5776022-5776875:-1:exon
so has part: feature:5742342-5742468:-1:exon
so has part: feature:5739895-5739979:-1:exon
so has part: feature:5731198-5731335:-1:exon
so has part: feature:5730066-5730130:-1:exon
so has part: feature:5729696-5729822:-1:exon
so has part: feature:5726501-5728715:-1:exon

position:5726501:-1
position: 5726501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5776875:-1
position: 5776875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5776022-5776875:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5742342-5742468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5739895-5739979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5731198-5731335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5730066-5730130:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5729696-5729822:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5726501-5728715:-1:exon

RETREG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: RETREG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: reticulophagy receptor FAM134B isoform X1
translation: MASPAPKEPAAQGCPAPAAAEQAPPPRAPAEEQEKEAPEEGAAAAAGAGPQVEEAAGGVAAAVTWLLGEPVLWLGCRADELLSWRRPLRSLLAFIGANLLFWFLALTPWRVYHLISVIILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLLKCNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTQAAPSLGEDTDTEEGDDFELLDQSELDQIESELGLSQDQEAETQQNKKSSGFLSNLLGGH
SIO_010081: RETREG1
subclass of: SO_0000673
so part of: RETREG1
location: complement(join(5728222..5728715,5729696..5729822,5730066..5730130,5731198..5731335,5739895..5739979,5742342..5742468,5829551..5829581,5835867..5835973,5878992..5879296))
location: region:5728222-5879296:-1
so has part: feature:5878992-5879296:-1:exon
so has part: feature:5835867-5835973:-1:exon
so has part: feature:5829551-5829581:-1:exon
so has part: feature:5742342-5742468:-1:exon
so has part: feature:5739895-5739979:-1:exon
so has part: feature:5731198-5731335:-1:exon
so has part: feature:5730066-5730130:-1:exon
so has part: feature:5729696-5729822:-1:exon
so has part: feature:5728222-5728715:-1:exon

XP_003483852.1
type: Protein
SIO_000068: ncbiprotein

position:5728222:-1
position: 5728222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5879296:-1
position: 5879296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5878992-5879296:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5835867-5835973:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5829551-5829581:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5742342-5742468:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5739895-5739979:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5731198-5731335:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5730066-5730130:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5729696-5729822:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5728222-5728715:-1:exon

RETREG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: RETREG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: reticulophagy receptor FAM134B isoform X2
translation: MPEGEDFGPGKSWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLLKCNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTQAAPSLGEDTDTEEGDDFELLDQSELDQIESELGLSQDQEAETQQNKKSSGFLSNLLGGH
SIO_010081: RETREG1
subclass of: SO_0000673
so part of: RETREG1
location: complement(join(5728222..5728715,5729696..5729822,5730066..5730130,5731198..5731335,5739895..5739979,5742342..5742468,5776022..5776056))
location: region:5728222-5776056:-1
so has part: feature:5776022-5776056:-1:exon
so has part: feature:5742342-5742468:-1:exon
so has part: feature:5739895-5739979:-1:exon
so has part: feature:5731198-5731335:-1:exon
so has part: feature:5730066-5730130:-1:exon
so has part: feature:5729696-5729822:-1:exon
so has part: feature:5728222-5728715:-1:exon

XP_003359776.2
type: Protein
SIO_000068: ncbiprotein

position:5776056:-1
position: 5776056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5776022-5776056:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5742342-5742468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5739895-5739979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5731198-5731335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5730066-5730130:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5729696-5729822:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5728222-5728715:-1:exon

RETREG1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: RETREG1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: reticulophagy receptor FAM134B isoform X2
translation: MPEGEDFGPGKSWEVINSKPDDRPGLSHCIAESWMNFSIFLQEMSVFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLLKCNDIGQKIYSKIKSFLLKLDFGIREYINQKRRERSEADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGPRPSKERHSAAGLTLPLSSDQTFHLMSNLAGNVITAAVTAAIKDQLEGAQQVLTQAAPSLGEDTDTEEGDDFELLDQSELDQIESELGLSQDQEAETQQNKKSSGFLSNLLGGH
SIO_010081: RETREG1
subclass of: SO_0000673
so part of: RETREG1
location: complement(join(5728222..5728715,5729696..5729822,5730066..5730130,5731198..5731335,5739895..5739979,5742342..5742468,5776022..5776056))
location: region:5728222-5776056:-1
so has part: feature:5776022-5776056:-1:exon
so has part: feature:5742342-5742468:-1:exon
so has part: feature:5739895-5739979:-1:exon
so has part: feature:5731198-5731335:-1:exon
so has part: feature:5730066-5730130:-1:exon
so has part: feature:5729696-5729822:-1:exon
so has part: feature:5728222-5728715:-1:exon

XP_005672453.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5776022-5776056:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5742342-5742468:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5739895-5739979:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5731198-5731335:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5730066-5730130:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5729696-5729822:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5728222-5728715:-1:exon

MYO10
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: MYO10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5907111..6145485)
location: region:5907111-6145485:-1
so has part: feature:5907111-6145485:-1:exon
subclass of: SO_0000010

396902
type: Gene
SIO_000068: ncbigene

position:5907111:-1
position: 5907111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6145485:-1
position: 6145485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5907111-6145485:-1:exon

MYO10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: MYO10
product: myosin X
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 58 ESTs, 254 long SRA reads, 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 149 samples with support for all annotated introns
transcript id: XM_005672397.3
SIO_010081: MYO10
subclass of: SO_0000673
so part of: MYO10
location: complement(join(5907111..5908599,5910207..5910398,5912221..5912673,5913608..5913728,5914558..5914694,5915757..5915964,5916977..5917274,5918251..5918374,5921039..5921196,5922199..5922393,5922657..5922799,5924631..5924686,5925716..5925809,5930266..5930361,5932799..5933042,5937381..5937504,5938372..5939238,5940203..5940248,5940982..5941215,5942029..5942135,5947961..5948075,5948168..5948292,5989942..5990022,5992610..5992718,5996044..5996126,5996550..5996618,5997066..5997158,5997976..5998042,5998418..5998518,5998658..5998804,6000434..6000552,6002098..6002227,6011895..6011998,6012585..6012669,6012777..6012790,6013278..6013402,6015154..6015288,6028482..6028669,6047376..6047534,6094164..6094262,6144946..6145485))
location: region:5907111-6145485:-1
so has part: feature:6144946-6145485:-1:exon
so has part: feature:6094164-6094262:-1:exon
so has part: feature:6047376-6047534:-1:exon
so has part: feature:6028482-6028669:-1:exon
so has part: feature:6015154-6015288:-1:exon
so has part: feature:6013278-6013402:-1:exon
so has part: feature:6012777-6012790:-1:exon
so has part: feature:6012585-6012669:-1:exon
so has part: feature:6011895-6011998:-1:exon
so has part: feature:6002098-6002227:-1:exon
so has part: feature:6000434-6000552:-1:exon
so has part: feature:5998658-5998804:-1:exon
so has part: feature:5998418-5998518:-1:exon
so has part: feature:5997976-5998042:-1:exon
so has part: feature:5997066-5997158:-1:exon
so has part: feature:5996550-5996618:-1:exon
so has part: feature:5996044-5996126:-1:exon
so has part: feature:5992610-5992718:-1:exon
so has part: feature:5989942-5990022:-1:exon
so has part: feature:5948168-5948292:-1:exon
so has part: feature:5947961-5948075:-1:exon
so has part: feature:5942029-5942135:-1:exon
so has part: feature:5940982-5941215:-1:exon
so has part: feature:5940203-5940248:-1:exon
so has part: feature:5938372-5939238:-1:exon
so has part: feature:5937381-5937504:-1:exon
so has part: feature:5932799-5933042:-1:exon
so has part: feature:5930266-5930361:-1:exon
so has part: feature:5925716-5925809:-1:exon
so has part: feature:5924631-5924686:-1:exon
so has part: feature:5922657-5922799:-1:exon
so has part: feature:5922199-5922393:-1:exon
so has part: feature:5921039-5921196:-1:exon
so has part: feature:5918251-5918374:-1:exon
so has part: feature:5916977-5917274:-1:exon
so has part: feature:5915757-5915964:-1:exon
so has part: feature:5914558-5914694:-1:exon
so has part: feature:5913608-5913728:-1:exon
so has part: feature:5912221-5912673:-1:exon
so has part: feature:5910207-5910398:-1:exon
so has part: feature:5907111-5908599:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6144946-6145485:-1:exon

position:6144946:-1
position: 6144946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6094164-6094262:-1:exon

position:6094164:-1
position: 6094164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6094262:-1
position: 6094262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6047376-6047534:-1:exon

position:6047376:-1
position: 6047376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6047534:-1
position: 6047534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6028482-6028669:-1:exon

position:6028482:-1
position: 6028482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6028669:-1
position: 6028669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6015154-6015288:-1:exon

position:6015154:-1
position: 6015154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6015288:-1
position: 6015288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6013278-6013402:-1:exon

position:6013278:-1
position: 6013278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6013402:-1
position: 6013402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6012777-6012790:-1:exon

position:6012777:-1
position: 6012777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6012790:-1
position: 6012790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6012585-6012669:-1:exon

position:6012585:-1
position: 6012585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6012669:-1
position: 6012669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6011895-6011998:-1:exon

position:6011895:-1
position: 6011895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6011998:-1
position: 6011998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6002098-6002227:-1:exon

position:6002098:-1
position: 6002098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6002227:-1
position: 6002227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6000434-6000552:-1:exon

position:6000434:-1
position: 6000434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6000552:-1
position: 6000552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5998658-5998804:-1:exon

position:5998658:-1
position: 5998658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5998804:-1
position: 5998804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5998418-5998518:-1:exon

position:5998418:-1
position: 5998418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5998518:-1
position: 5998518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5997976-5998042:-1:exon

position:5997976:-1
position: 5997976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5998042:-1
position: 5998042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5997066-5997158:-1:exon

position:5997066:-1
position: 5997066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5997158:-1
position: 5997158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5996550-5996618:-1:exon

position:5996550:-1
position: 5996550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5996618:-1
position: 5996618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5996044-5996126:-1:exon

position:5996044:-1
position: 5996044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5996126:-1
position: 5996126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5992610-5992718:-1:exon

position:5992610:-1
position: 5992610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5992718:-1
position: 5992718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5989942-5990022:-1:exon

position:5989942:-1
position: 5989942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5990022:-1
position: 5990022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5948168-5948292:-1:exon

position:5948168:-1
position: 5948168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5948292:-1
position: 5948292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5947961-5948075:-1:exon

position:5947961:-1
position: 5947961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5948075:-1
position: 5948075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5942029-5942135:-1:exon

position:5942029:-1
position: 5942029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5942135:-1
position: 5942135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5940982-5941215:-1:exon

position:5940982:-1
position: 5940982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5941215:-1
position: 5941215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:5940203-5940248:-1:exon

position:5940203:-1
position: 5940203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5940248:-1
position: 5940248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:5938372-5939238:-1:exon

position:5938372:-1
position: 5938372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5939238:-1
position: 5939238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:5937381-5937504:-1:exon

position:5937381:-1
position: 5937381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5937504:-1
position: 5937504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:5932799-5933042:-1:exon

position:5932799:-1
position: 5932799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5933042:-1
position: 5933042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:5930266-5930361:-1:exon

position:5930266:-1
position: 5930266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5930361:-1
position: 5930361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:5925716-5925809:-1:exon

position:5925716:-1
position: 5925716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5925809:-1
position: 5925809
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:5924631-5924686:-1:exon

position:5924631:-1
position: 5924631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5924686:-1
position: 5924686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:5922657-5922799:-1:exon

position:5922657:-1
position: 5922657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5922799:-1
position: 5922799
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:5922199-5922393:-1:exon

position:5922199:-1
position: 5922199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5922393:-1
position: 5922393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:5921039-5921196:-1:exon

position:5921039:-1
position: 5921039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5921196:-1
position: 5921196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:5918251-5918374:-1:exon

position:5918251:-1
position: 5918251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5918374:-1
position: 5918374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:5916977-5917274:-1:exon

position:5916977:-1
position: 5916977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5917274:-1
position: 5917274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:5915757-5915964:-1:exon

position:5915757:-1
position: 5915757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5915964:-1
position: 5915964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 37
SIO_000628: feature:5914558-5914694:-1:exon

position:5914558:-1
position: 5914558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5914694:-1
position: 5914694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 38
SIO_000628: feature:5913608-5913728:-1:exon

position:5913608:-1
position: 5913608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5913728:-1
position: 5913728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 39
SIO_000628: feature:5912221-5912673:-1:exon

position:5912221:-1
position: 5912221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5912673:-1
position: 5912673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 40
SIO_000628: feature:5910207-5910398:-1:exon

position:5910207:-1
position: 5910207
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5910398:-1
position: 5910398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 41
SIO_000628: feature:5907111-5908599:-1:exon

position:5908599:-1
position: 5908599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MYO10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: MYO10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: unconventional myosin-X
translation: MDNFFPEGTRVWLRENGQHFPSTVNSCAEGVVVFRTDYGQVFTYKQSTITHQKVTAMHPMDEEGVDDMATLAELHGGAIMHNLHQRYKRDQIYTYIGSIIASVNPYKPIAGLYAHEAVERYSRCHLGELPPHVFAIANECYRCLWKRHDNQCVLISGESGAGKTESTKLILKFLSAISQQSLDLSLKEKTSSVERAILESSPIMEAFGNAKTVYNNNSSRFGKFVQLNICQKGNIQGGRIVDYLLEKNRVVRQNPGERNYHVFYALLAGLEHEEREEFYLSVPENYHYLNQSGCVADKTINDQESFREVITAMEVMQFSKEEVREVLRLLAGILHLGNIEFITAGGAQISFKTALGRSAELLGLDPAQLTDALTQRSMFLRGEEILTPLSVQQAVDSRDSLAMALYARCFEWVIKKINSRIKGKDDFKSIGILDIFGFENFEVNHFEQFNINYANEKLQEYFNKHIFSLEQLEYSREGLVWEDIDWIDNGECLDLIEKKLGLLALINEESHFPQATDGTLLEKLHNQHANNHFYVKPRVAVNNFGVKHYAGEVQYDVRGILEKNRDTFRDDLLNLLRESRFDFIYDLFEHVSSRNNQDTLKCGSKHRRPTVSSQFKDSLHSLMATLSSSNPFFVRCIKPNMQKMPDQFDQAVVVNQLRYSGMLETVRIRKAGYAVRRPFQDFYKRYKVLLRNVALPEDVRGKCTALLQLYDSSSSEWQLGKTKVFLRESLEQKLEKRREEEVTRAAMVIRAHVLGYLARKQYRKVLDCVVIIQKNYRAFLLRRRFLHLKKAAVVFQKQLRGQIARKVYRHLLAEKRAEEEKRKREEEEKRRREEEERERERAQREAELRAQQEEAARKQRELEALQESQREAELSRELEKQKENKQVEEILRLEKEIEDLQRMKERQELSLTEASLQKLQQLRDEELRRLEDEACRAAQEFLESLNFDEIDECVRNIERSLSVGSGFVDEPGEGAEGASGEKPSFNFSQPYPEEEVDEGFEADDDAFKDSPNPSEHGHSDQRTSGIRTSDESSEEDPYMNDTVVPTSPSADSTVLLAPSELSSSGGDATYCLPQTPGGPPSADGDYDYDQDDYEDGAITSGSSVTFSNSYGSQWSPDYRCSVGTYNSSGAYRFSSEGAQSSFEDSEEDFDSRFDTDDELSYRRDSVYSCVTLPYFHSFLYMKGGLMNSWKRRWCVLKDETFLWFRSKQEALKQGWLHKKGGGSSTLSRRNWKRRWFVLRQARLMYFENDSEEKLKGTVEVRTAKEIVDNTSKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHASTDQEIREMHDEQANPQNAVGTLDVGLIDSVCASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRSKGDTRVEGQEFIVRGWLHKEVKNSPKMSSLKLKKRWFVLTHNSLDYYKSSEKNALKLGTLVLNSLCSVVPPDEKIFKETGYWNITVYGRKHCYRLYTKLLNEATRWSSAIQNVTDTKAPIDTPTQQLIQDIKENCLNSDVVEQIYKRNPILRHTHHPLHSPLLPLPYGDINLNLLKDKGYTTLQDEAIKIFNSLQQLESMSDPVPIIQGILQTGHDLRPLRDELYCQLIKQTNKVPHPGSVGNLCSWQILTCLSCTFLPSRSILKYLKFHLRRIREQFPGTEMEKYALFIYESLKKTKCREFVPSRDEIEALIHRQEMTSTVHCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGQVDKAIESRTIVADVLAKFEKLAATSDVGDQPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIRGHYPAPEENLQVLAALRLQYLQGDYTLHATVPPLEEVYSLQRLKARISQSTKSFTPSERLEKRRTSFLEGTLRRSFRTGAAVRQKVEEEQMLDMWVKEEVSSARASIMDKWKKFQGMSQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQDLWLGVSADAVSVYKRGEGRPLEVFQYEHILSFG…
SIO_010081: MYO10
subclass of: SO_0000673
so part of: MYO10
location: complement(join(5908498..5908599,5910207..5910398,5912221..5912673,5913608..5913728,5914558..5914694,5915757..5915964,5916977..5917274,5918251..5918374,5921039..5921196,5922199..5922393,5922657..5922799,5924631..5924686,5925716..5925809,5930266..5930361,5932799..5933042,5937381..5937504,5938372..5939238,5940203..5940248,5940982..5941215,5942029..5942135,5947961..5948075,5948168..5948292,5989942..5990022,5992610..5992718,5996044..5996126,5996550..5996618,5997066..5997158,5997976..5998042,5998418..5998518,5998658..5998804,6000434..6000552,6002098..6002227,6011895..6011998,6012585..6012669,6012777..6012790,6013278..6013402,6015154..6015288,6028482..6028669,6047376..6047534,6094164..6094262,6144946..6144966))
location: region:5908498-6144966:-1
so has part: feature:6144946-6144966:-1:exon
so has part: feature:6094164-6094262:-1:exon
so has part: feature:6047376-6047534:-1:exon
so has part: feature:6028482-6028669:-1:exon
so has part: feature:6015154-6015288:-1:exon
so has part: feature:6013278-6013402:-1:exon
so has part: feature:6012777-6012790:-1:exon
so has part: feature:6012585-6012669:-1:exon
so has part: feature:6011895-6011998:-1:exon
so has part: feature:6002098-6002227:-1:exon
so has part: feature:6000434-6000552:-1:exon
so has part: feature:5998658-5998804:-1:exon
so has part: feature:5998418-5998518:-1:exon
so has part: feature:5997976-5998042:-1:exon
so has part: feature:5997066-5997158:-1:exon
so has part: feature:5996550-5996618:-1:exon
so has part: feature:5996044-5996126:-1:exon
so has part: feature:5992610-5992718:-1:exon
so has part: feature:5989942-5990022:-1:exon
so has part: feature:5948168-5948292:-1:exon
so has part: feature:5947961-5948075:-1:exon
so has part: feature:5942029-5942135:-1:exon
so has part: feature:5940982-5941215:-1:exon
so has part: feature:5940203-5940248:-1:exon
so has part: feature:5938372-5939238:-1:exon
so has part: feature:5937381-5937504:-1:exon
so has part: feature:5932799-5933042:-1:exon
so has part: feature:5930266-5930361:-1:exon
so has part: feature:5925716-5925809:-1:exon
so has part: feature:5924631-5924686:-1:exon
so has part: feature:5922657-5922799:-1:exon
so has part: feature:5922199-5922393:-1:exon
so has part: feature:5921039-5921196:-1:exon
so has part: feature:5918251-5918374:-1:exon
so has part: feature:5916977-5917274:-1:exon
so has part: feature:5915757-5915964:-1:exon
so has part: feature:5914558-5914694:-1:exon
so has part: feature:5913608-5913728:-1:exon
so has part: feature:5912221-5912673:-1:exon
so has part: feature:5910207-5910398:-1:exon
so has part: feature:5908498-5908599:-1:exon

XP_005672454.2
type: Protein
SIO_000068: ncbiprotein

position:5908498:-1
position: 5908498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6144966:-1
position: 6144966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6144946-6144966:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6094164-6094262:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6047376-6047534:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6028482-6028669:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6015154-6015288:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6013278-6013402:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6012777-6012790:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6012585-6012669:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6011895-6011998:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6002098-6002227:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6000434-6000552:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5998658-5998804:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5998418-5998518:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5997976-5998042:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5997066-5997158:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5996550-5996618:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5996044-5996126:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5992610-5992718:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5989942-5990022:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5948168-5948292:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5947961-5948075:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:5942029-5942135:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:5940982-5941215:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:5940203-5940248:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:5938372-5939238:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:5937381-5937504:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:5932799-5933042:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:5930266-5930361:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:5925716-5925809:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:5924631-5924686:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:5922657-5922799:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:5922199-5922393:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:5921039-5921196:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:5918251-5918374:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:5916977-5917274:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:5915757-5915964:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:5914558-5914694:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:5913608-5913728:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:5912221-5912673:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:5910207-5910398:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:5908498-5908599:-1:exon

LOC102167708
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC102167708
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6170442..6214121
location: region:6170442-6214121:1
so has part: feature:6170442-6214121:1:exon
subclass of: SO_0000011

102167708
type: Gene
SIO_000068: ncbigene

position:6170442:1
position: 6170442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6214121:1
position: 6214121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6170442-6214121:1:exon

LOC102167708
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102167708
product: uncharacterized LOC102167708, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_308345.3
SIO_010081: LOC102167708
subclass of: SO_0000673
so part of: LOC102167708
location: join(6170442..6170947,6188659..6189064,6193456..6193592,6206808..6206910,6213806..6214121)
location: region:6170442-6214121:1
so has part: feature:6170442-6170947:1:exon
so has part: feature:6188659-6189064:1:exon
so has part: feature:6193456-6193592:1:exon
so has part: feature:6206808-6206910:1:exon
so has part: feature:6213806-6214121:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6170442-6170947:1:exon

position:6170947:1
position: 6170947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6188659-6189064:1:exon

position:6188659:1
position: 6188659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6189064:1
position: 6189064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6193456-6193592:1:exon

position:6193456:1
position: 6193456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6193592:1
position: 6193592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6206808-6206910:1:exon

position:6206808:1
position: 6206808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6206910:1
position: 6206910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6213806-6214121:1:exon

position:6213806:1
position: 6213806
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102167708
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102167708
product: uncharacterized LOC102167708, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_002339623.1
SIO_010081: LOC102167708
subclass of: SO_0000673
so part of: LOC102167708
location: join(6170443..6170947,6193456..6193592,6206808..6206910,6213806..6214121)
location: region:6170443-6214121:1
so has part: feature:6170443-6170947:1:exon
so has part: feature:6193456-6193592:1:exon
so has part: feature:6206808-6206910:1:exon
so has part: feature:6213806-6214121:1:exon

position:6170443:1
position: 6170443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6170443-6170947:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6193456-6193592:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6206808-6206910:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6213806-6214121:1:exon

LOC102167846
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC102167846
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6365179..6383725)
location: region:6365179-6383725:-1
so has part: feature:6365179-6383725:-1:exon
subclass of: SO_0000011

102167846
type: Gene
SIO_000068: ncbigene

position:6365179:-1
position: 6365179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6383725:-1
position: 6383725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6365179-6383725:-1:exon

LOC102167846
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC102167846
product: uncharacterized LOC102167846
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 long SRA reads, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_308347.3
SIO_010081: LOC102167846
subclass of: SO_0000673
so part of: LOC102167846
location: complement(join(6365179..6367435,6374355..6374651,6382810..6383725))
location: region:6365179-6383725:-1
so has part: feature:6382810-6383725:-1:exon
so has part: feature:6374355-6374651:-1:exon
so has part: feature:6365179-6367435:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6382810-6383725:-1:exon

position:6382810:-1
position: 6382810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6374355-6374651:-1:exon

position:6374355:-1
position: 6374355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6374651:-1
position: 6374651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6365179-6367435:-1:exon

position:6367435:-1
position: 6367435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BASP1
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: BASP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6384322..6440507
location: region:6384322-6440507:1
so has part: feature:6384322-6440507:1:exon
subclass of: SO_0000010

100522108
type: Gene
SIO_000068: ncbigene

position:6384322:1
position: 6384322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6440507:1
position: 6440507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6384322-6440507:1:exon

BASP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: BASP1
product: brain abundant membrane attached signal protein 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 145 ESTs, 35 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 176 samples with support for all annotated introns
transcript id: XM_003483806.4
SIO_010081: BASP1
subclass of: SO_0000673
so part of: BASP1
location: join(6384322..6384540,6438908..6440507)
location: region:6384322-6440507:1
so has part: feature:6384322-6384540:1:exon
so has part: feature:6438908-6440507:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6384322-6384540:1:exon

position:6384540:1
position: 6384540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6438908-6440507:1:exon

position:6438908:1
position: 6438908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

BASP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: BASP1
product: brain abundant membrane attached signal protein 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 112 ESTs, 11 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
transcript id: XM_013984704.2
SIO_010081: BASP1
subclass of: SO_0000673
so part of: BASP1
location: join(6400839..6401624,6438908..6440507)
location: region:6400839-6440507:1
so has part: feature:6400839-6401624:1:exon
so has part: feature:6438908-6440507:1:exon

position:6400839:1
position: 6400839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6400839-6401624:1:exon

position:6401624:1
position: 6401624
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6438908-6440507:1:exon

BASP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: BASP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: brain acid soluble protein 1
translation: MGGKLSKKKKGYNVNDEKAKDKDKKAEGAGTEEEGTPKENETQAAAETPEVKEGKEEKPEKDAQDAGGKPDDKEGEKDAEAAKEDAPKAEPEQTEGAEGKQETPKDAEQEAAAASGPAAGGEAPKASEAEAAEPAALTKDDKSKEAGEPTKTEAPAAPAAQETKSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETPAANSDQTVAVKE
SIO_010081: BASP1
subclass of: SO_0000673
so part of: BASP1
location: 6438917..6439603
location: region:6438917-6439603:1
so has part: feature:6438917-6439603:1:exon

XP_003483854.1
type: Protein
SIO_000068: ncbiprotein

position:6438917:1
position: 6438917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6439603:1
position: 6439603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6438917-6439603:1:exon

BASP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: BASP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: brain acid soluble protein 1
translation: MGGKLSKKKKGYNVNDEKAKDKDKKAEGAGTEEEGTPKENETQAAAETPEVKEGKEEKPEKDAQDAGGKPDDKEGEKDAEAAKEDAPKAEPEQTEGAEGKQETPKDAEQEAAAASGPAAGGEAPKASEAEAAEPAALTKDDKSKEAGEPTKTEAPAAPAAQETKSDGAPASDSKPSSTEAAPSSKETPAATEAPSSTPKAQAPAAPADEVKPAETPAANSDQTVAVKE
SIO_010081: BASP1
subclass of: SO_0000673
so part of: BASP1
location: 6438917..6439603
location: region:6438917-6439603:1
so has part: feature:6438917-6439603:1:exon

XP_013840158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6438917-6439603:1:exon

LOC106506454
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC106506454
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6475608..6536520
location: region:6475608-6536520:1
so has part: feature:6475608-6536520:1:exon
subclass of: SO_0000011

106506454
type: Gene
SIO_000068: ncbigene

position:6475608:1
position: 6475608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6536520:1
position: 6536520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6475608-6536520:1:exon

LOC106506454
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC106506454
product: uncharacterized LOC106506454
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_002339692.1
SIO_010081: LOC106506454
subclass of: SO_0000673
so part of: LOC106506454
location: join(6475608..6475836,6536316..6536520)
location: region:6475608-6536520:1
so has part: feature:6475608-6475836:1:exon
so has part: feature:6536316-6536520:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6475608-6475836:1:exon

position:6475836:1
position: 6475836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6536316-6536520:1:exon

position:6536316:1
position: 6536316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102168105
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC102168105
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6717894..6719976
location: region:6717894-6719976:1
so has part: feature:6717894-6719976:1:exon
subclass of: SO_0000010

102168105
type: Gene
SIO_000068: ncbigene

position:6717894:1
position: 6717894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6719976:1
position: 6719976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6717894-6719976:1:exon

LOC102168105
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: LOC102168105
product: E3 ubiquitin-protein ligase RNF167-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_021076958.1
SIO_010081: LOC102168105
subclass of: SO_0000673
so part of: LOC102168105
location: join(6717894..6718870,6718994..6719976)
location: region:6717894-6719976:1
so has part: feature:6717894-6718870:1:exon
so has part: feature:6718994-6719976:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6717894-6718870:1:exon

position:6718870:1
position: 6718870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6718994-6719976:1:exon

position:6718994:1
position: 6718994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102168105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: LOC102168105
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase RNF167-like
translation: MHPAASLLSVFVATVLWGVAPIRGLIRATSYHNASMNFADLPALFGTALSPEGLKGFLVEAHPANACSPIAPPPPAWVNGSVFIALLRRFDCSFDLKVLNAQKAGYDAAVVHNVDSDELVNMVWNNEEIQQQIWIPSVFIGEKSSKYLRALFVYQNRAQKQHRGNRLTEEQLKQIPTRDYHKGDQYDVCAICLEEYEVGDKLRVLPCTHAYHCCCVDRWLTQTRETCPICKQPVQRNPEEEEEQEEEIQGQEGVEEGEPRVHLASERTHFWAPAPHFPYPLAPSPQSPLCFLGLQQMPHPLHPPLPLQLPS
SIO_010081: LOC102168105
subclass of: SO_0000673
so part of: LOC102168105
location: join(6718394..6718870,6718994..6719452)
location: region:6718394-6719452:1
so has part: feature:6718394-6718870:1:exon
so has part: feature:6718994-6719452:1:exon

XP_020932617.1
type: Protein
SIO_000068: ncbiprotein

position:6718394:1
position: 6718394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6719452:1
position: 6719452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6718394-6718870:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6718994-6719452:1:exon

LOC110257281
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257281
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6765365..6770259
location: region:6765365-6770259:1
so has part: feature:6765365-6770259:1:exon
subclass of: SO_0000011

110257281
type: Gene
SIO_000068: ncbigene

position:6765365:1
position: 6765365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6770259:1
position: 6770259
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6765365-6770259:1:exon

LOC110257281
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257281
product: uncharacterized LOC110257281
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 10 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
transcript id: XR_002339691.1
SIO_010081: LOC110257281
subclass of: SO_0000673
so part of: LOC110257281
location: join(6765365..6765801,6768129..6770259)
location: region:6765365-6770259:1
so has part: feature:6765365-6765801:1:exon
so has part: feature:6768129-6770259:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6765365-6765801:1:exon

position:6765801:1
position: 6765801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6768129-6770259:1:exon

position:6768129:1
position: 6768129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDH18
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(8090253..9117046)
location: region:8090253-9117046:-1
so has part: feature:8090253-9117046:-1:exon
subclass of: SO_0000010

100625674
type: Gene
SIO_000068: ncbigene

position:8090253:-1
position: 8090253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9117046:-1
position: 9117046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8090253-9117046:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 22 long SRA reads, 14 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_021076963.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8090253..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8578058..8578215))
location: region:8090253-8578215:-1
so has part: feature:8578058-8578215:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8090253-8099441:-1:exon

position:8578215:-1
position: 8578215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8578058-8578215:-1:exon

position:8578058:-1
position: 8578058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8438110-8438593:-1:exon

position:8438110:-1
position: 8438110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8438593:-1
position: 8438593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8344394-8344688:-1:exon

position:8344394:-1
position: 8344394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8344688:-1
position: 8344688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8315562-8315681:-1:exon

position:8315562:-1
position: 8315562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8315681:-1
position: 8315681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:8231437-8231604:-1:exon

position:8231437:-1
position: 8231437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8231604:-1
position: 8231604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:8206655-8206842:-1:exon

position:8206655:-1
position: 8206655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8206842:-1
position: 8206842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:8192085-8192338:-1:exon

position:8192085:-1
position: 8192085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8192338:-1
position: 8192338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:8175186-8175322:-1:exon

position:8175186:-1
position: 8175186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8175322:-1
position: 8175322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:8143725-8143846:-1:exon

position:8143725:-1
position: 8143725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8143846:-1
position: 8143846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:8129732-8129849:-1:exon

position:8129732:-1
position: 8129732
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8129849:-1
position: 8129849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:8108439-8108690:-1:exon

position:8108439:-1
position: 8108439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8108690:-1
position: 8108690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:8090253-8099441:-1:exon

position:8099441:-1
position: 8099441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 6 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_021076971.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8097031..8099441,8108439..8108581,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8816471..8816532,9116566..9116823))
location: region:8097031-9116823:-1
so has part: feature:9116566-9116823:-1:exon
so has part: feature:8816471-8816532:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108581:-1:exon
so has part: feature:8097031-8099441:-1:exon

position:8097031:-1
position: 8097031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9116823:-1
position: 9116823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9116566-9116823:-1:exon

position:9116566:-1
position: 9116566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:8816471-8816532:-1:exon

position:8816471:-1
position: 8816471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8816532:-1
position: 8816532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8108439-8108581:-1:exon

position:8108581:-1
position: 8108581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:8097031-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 10 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_021076964.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098657..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8816471..8816532,9116566..9117046))
location: region:8098657-9117046:-1
so has part: feature:9116566-9117046:-1:exon
so has part: feature:8816471-8816532:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098657-8099441:-1:exon

position:8098657:-1
position: 8098657
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9116566-9117046:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8816471-8816532:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8098657-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 8 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_021076965.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098657..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8688277..8688371,8816471..8816532,9116566..9117046))
location: region:8098657-9117046:-1
so has part: feature:9116566-9117046:-1:exon
so has part: feature:8816471-8816532:-1:exon
so has part: feature:8688277-8688371:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098657-8099441:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9116566-9117046:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8816471-8816532:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8688277-8688371:-1:exon

position:8688277:-1
position: 8688277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8688371:-1
position: 8688371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8098657-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 7 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_021076966.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098657..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8816471..8816532,8963371..8963455,9116566..9117046))
location: region:8098657-9117046:-1
so has part: feature:9116566-9117046:-1:exon
so has part: feature:8963371-8963455:-1:exon
so has part: feature:8816471-8816532:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098657-8099441:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9116566-9117046:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8963371-8963455:-1:exon

position:8963371:-1
position: 8963371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8963455:-1
position: 8963455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:8816471-8816532:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8098657-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 7 long SRA reads, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_021076967.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098657..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8688277..8688371,8816471..8816532,8963371..8963455,9116566..9117046))
location: region:8098657-9117046:-1
so has part: feature:9116566-9117046:-1:exon
so has part: feature:8963371-8963455:-1:exon
so has part: feature:8816471-8816532:-1:exon
so has part: feature:8688277-8688371:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098657-8099441:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9116566-9117046:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8963371-8963455:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8816471-8816532:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8688277-8688371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:8098657-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 7 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_021076968.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098657..8099441,8108439..8108584,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8578058..8578190))
location: region:8098657-8578190:-1
so has part: feature:8578058-8578190:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108584:-1:exon
so has part: feature:8098657-8099441:-1:exon

position:8578190:-1
position: 8578190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8578058-8578190:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8108439-8108584:-1:exon

position:8108584:-1
position: 8108584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:8098657-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_021076969.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098672..8099441,8108439..8108584,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8816471..8816532,9116566..9116751))
location: region:8098672-9116751:-1
so has part: feature:9116566-9116751:-1:exon
so has part: feature:8816471-8816532:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108584:-1:exon
so has part: feature:8098672-8099441:-1:exon

position:8098672:-1
position: 8098672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9116751:-1
position: 9116751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9116566-9116751:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8816471-8816532:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8108439-8108584:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:8098672-8099441:-1:exon

CDH18
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH18
product: cadherin 18, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_021076970.1
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098683..8099441,8108439..8108581,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438593,8578058..8578236))
location: region:8098683-8578236:-1
so has part: feature:8578058-8578236:-1:exon
so has part: feature:8438110-8438593:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108581:-1:exon
so has part: feature:8098683-8099441:-1:exon

position:8098683:-1
position: 8098683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8578236:-1
position: 8578236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8578058-8578236:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8438110-8438593:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8108439-8108581:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:8098683-8099441:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X1
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEDNTASILTRRRRFSRTIQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVVILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTLATLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYQYLGDWGPEFKKLAELYGEIESERTT
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098951..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8098951-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098951-8099441:-1:exon

XP_020932622.1
type: Protein
SIO_000068: ncbiprotein

position:8098951:-1
position: 8098951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8438337:-1
position: 8438337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8098951-8099441:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X1
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEDNTASILTRRRRFSRTIQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVVILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTLATLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYQYLGDWGPEFKKLAELYGEIESERTT
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098951..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8098951-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098951-8099441:-1:exon

XP_020932623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8098951-8099441:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X1
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEDNTASILTRRRRFSRTIQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVVILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTLATLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYQYLGDWGPEFKKLAELYGEIESERTT
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098951..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8098951-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098951-8099441:-1:exon

XP_020932624.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8098951-8099441:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X1
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEDNTASILTRRRRFSRTIQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVVILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTLATLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYQYLGDWGPEFKKLAELYGEIESERTT
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098951..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8098951-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098951-8099441:-1:exon

XP_020932625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8098951-8099441:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X1
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEDNTASILTRRRRFSRTIQDVYYLPIMISDGGIPSLSSSSTLTIRVCACERDGRVRTCHAEAFLSSAGLSTGALIAILLCVVILLAIVVLFITLRRSKKEPLIISEEDVRENVVTYDDEGGGEEDTEAFDITALRNPSAAEELKYRRDIRPEVKLTPRHQTLATLESIDVQEFIKQRLAEADLDPSVPPYDSLQTYAYEGQRSEAGSISSLDSATTQSDQDYQYLGDWGPEFKKLAELYGEIESERTT
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8098951..8099441,8108439..8108690,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8098951-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108439-8108690:-1:exon
so has part: feature:8098951-8099441:-1:exon

XP_020932626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108439-8108690:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:8098951-8099441:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X3
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEAAAPSPSGFVHAREMGACGPAMQKPSCPRLV
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8108487..8108581,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8108487-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108487-8108581:-1:exon

XP_020932629.1
type: Protein
SIO_000068: ncbiprotein

position:8108487:-1
position: 8108487
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108487-8108581:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X3
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEAAAPSPSGFVHAREMGACGPAMQKPSCPRLV
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8108487..8108581,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8108487-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108487-8108581:-1:exon

XP_020932630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108487-8108581:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X2
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEAAAAPSPSGFVHAREMGACGPAMQKPSCPRLV
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8108487..8108584,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8108487-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108487-8108584:-1:exon

XP_020932627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108487-8108584:-1:exon

CDH18
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH18
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-18 isoform X2
translation: MKITSTSCICPVLVCLCFVQRCYGTAHHSSIKGTRNQTKHIEGETEVHHRPKRGWVWNQFFVLEEHMGPDPQYVGKLHSNSDKGDGSVKYILTGEGAGTIFIIDDTTGDIHSTKSLDREQKTHYVLHAQAIDRRTNKPLEPESEFIIKVQDINDNAPKFTDGPYIVTVPEMSDMGTSVLQVTATDADDPTYGNSARVVYSILQGQPYFSVDPKTGVIRTALHNMDREAREHYSVVIQAKDMAGQVGGLSGSTTVNITLTDVNDNPPRFPQKHYQLYVPESAQVGSAVGKIKANDADTGSNADMTYSIINGDGIGIFSISTDKETREGILSLKKPLNYEKKKSYTLNIEGANTHLDFRFSHLGPFKDATMLKIIVGDVDEPPLFSMPSYVMEVYENAKIGTVVGTVLAQDPDSANSLVRYFIDYNAEDDRFFNIDANTGTIKTTKVLDREETPWYNITVAASENDNPGLLSHVTVGIRVLDVNDNPPELAREYDIVVCENSKPGQVIHTISATDKDDFANGPRFNFFLDEHLSVNPNFTLKDNEAAAAPSPSGFVHAREMGACGPAMQKPSCPRLV
SIO_010081: CDH18
subclass of: SO_0000673
so part of: CDH18
location: complement(join(8108487..8108584,8129732..8129849,8143725..8143846,8175186..8175322,8192085..8192338,8206655..8206842,8231437..8231604,8315562..8315681,8344394..8344688,8438110..8438337))
location: region:8108487-8438337:-1
so has part: feature:8438110-8438337:-1:exon
so has part: feature:8344394-8344688:-1:exon
so has part: feature:8315562-8315681:-1:exon
so has part: feature:8231437-8231604:-1:exon
so has part: feature:8206655-8206842:-1:exon
so has part: feature:8192085-8192338:-1:exon
so has part: feature:8175186-8175322:-1:exon
so has part: feature:8143725-8143846:-1:exon
so has part: feature:8129732-8129849:-1:exon
so has part: feature:8108487-8108584:-1:exon

XP_020932628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8438110-8438337:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:8344394-8344688:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:8315562-8315681:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:8231437-8231604:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:8206655-8206842:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:8192085-8192338:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:8175186-8175322:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:8143725-8143846:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:8129732-8129849:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8108487-8108584:-1:exon

LOC110257310
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257310
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 8679829..8682528
location: region:8679829-8682528:1
so has part: feature:8679829-8682528:1:exon

110257310
type: Gene
SIO_000068: ncbigene

position:8679829:1
position: 8679829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8682528:1
position: 8682528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8679829-8682528:1:exon

LOC110257310
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC110257310
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC110257310
subclass of: SO_0000673
so part of: LOC110257310
location: 8679829..8682528
location: region:8679829-8682528:1
so has part: feature:8679829-8682528:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8679829-8682528:1:exon

CDH12
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: CDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(9985759..10975489)
location: region:9985759-10975489:-1
so has part: feature:9985759-10975489:-1:exon
subclass of: SO_0000010

100523408
type: Gene
SIO_000068: ncbigene

position:9985759:-1
position: 9985759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10975489:-1
position: 10975489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9985759-10975489:-1:exon

CDH12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH12
product: cadherin 12, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 6 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XM_021077038.1
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985759..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10190600..10190894,10263145..10263561,10384513..10384661,10643990..10644071,10974758..10975489))
location: region:9985759-10975489:-1
so has part: feature:10974758-10975489:-1:exon
so has part: feature:10643990-10644071:-1:exon
so has part: feature:10384513-10384661:-1:exon
so has part: feature:10263145-10263561:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985759-9986457:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10974758-10975489:-1:exon

position:10974758:-1
position: 10974758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10643990-10644071:-1:exon

position:10643990:-1
position: 10643990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10644071:-1
position: 10644071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:10384513-10384661:-1:exon

position:10384513:-1
position: 10384513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10384661:-1
position: 10384661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:10263145-10263561:-1:exon

position:10263145:-1
position: 10263145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10263561:-1
position: 10263561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:10190600-10190894:-1:exon

position:10190600:-1
position: 10190600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10190894:-1
position: 10190894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10077639-10077806:-1:exon

position:10077639:-1
position: 10077639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10077806:-1
position: 10077806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:10046221-10046408:-1:exon

position:10046221:-1
position: 10046221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10046408:-1
position: 10046408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:10032006-10032259:-1:exon

position:10032006:-1
position: 10032006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10032259:-1
position: 10032259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:10015413-10015549:-1:exon

position:10015413:-1
position: 10015413
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10015549:-1
position: 10015549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:9996759-9996880:-1:exon

position:9996759:-1
position: 9996759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9996880:-1
position: 9996880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:9993978-9994095:-1:exon

position:9993978:-1
position: 9993978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9994095:-1
position: 9994095
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:9989338-9989589:-1:exon

position:9989338:-1
position: 9989338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9989589:-1
position: 9989589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:9985759-9986457:-1:exon

position:9986457:-1
position: 9986457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDH12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH12
product: cadherin 12, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 10 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_021077037.1
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985759..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263561,10643990..10644071,10974758..10975469))
location: region:9985759-10975469:-1
so has part: feature:10974758-10975469:-1:exon
so has part: feature:10643990-10644071:-1:exon
so has part: feature:10263145-10263561:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985759-9986457:-1:exon

position:10975469:-1
position: 10975469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10974758-10975469:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10643990-10644071:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10263145-10263561:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10090334-10090453:-1:exon

position:10090334:-1
position: 10090334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10090453:-1
position: 10090453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:9985759-9986457:-1:exon

CDH12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH12
product: cadherin 12, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 12 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_021077036.1
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985759..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263561,10384513..10384661,10643990..10644071,10974758..10975469))
location: region:9985759-10975469:-1
so has part: feature:10974758-10975469:-1:exon
so has part: feature:10643990-10644071:-1:exon
so has part: feature:10384513-10384661:-1:exon
so has part: feature:10263145-10263561:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985759-9986457:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10974758-10975469:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10643990-10644071:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10384513-10384661:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10263145-10263561:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:9985759-9986457:-1:exon

CDH12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH12
product: cadherin 12, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 7 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_013984708.2
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985759..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263561,10384513..10385913))
location: region:9985759-10385913:-1
so has part: feature:10384513-10385913:-1:exon
so has part: feature:10263145-10263561:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985759-9986457:-1:exon

position:10385913:-1
position: 10385913
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10384513-10385913:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10263145-10263561:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9985759-9986457:-1:exon

CDH12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH12
product: cadherin 12, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 6 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_005672398.3
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985759..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263561,10267507..10268135))
location: region:9985759-10268135:-1
so has part: feature:10267507-10268135:-1:exon
so has part: feature:10263145-10263561:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985759-9986457:-1:exon

position:10268135:-1
position: 10268135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10267507-10268135:-1:exon

position:10267507:-1
position: 10267507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:10263145-10263561:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:9985759-9986457:-1:exon

CDH12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-12 isoform X2
translation: MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985958..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10190600..10190894,10263145..10263375))
location: region:9985958-10263375:-1
so has part: feature:10263145-10263375:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985958-9986457:-1:exon

XP_020932697.1
type: Protein
SIO_000068: ncbiprotein

position:9985958:-1
position: 9985958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10263375:-1
position: 10263375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10263145-10263375:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9985958-9986457:-1:exon

CDH12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-12 isoform X1
translation: MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985958..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263375))
location: region:9985958-10263375:-1
so has part: feature:10263145-10263375:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985958-9986457:-1:exon

XP_020932695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10263145-10263375:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9985958-9986457:-1:exon

CDH12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-12 isoform X1
translation: MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985958..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263375))
location: region:9985958-10263375:-1
so has part: feature:10263145-10263375:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985958-9986457:-1:exon

XP_020932696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10263145-10263375:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9985958-9986457:-1:exon

CDH12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-12 isoform X1
translation: MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985958..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263375))
location: region:9985958-10263375:-1
so has part: feature:10263145-10263375:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985958-9986457:-1:exon

XP_005672455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10263145-10263375:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9985958-9986457:-1:exon

CDH12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-12 isoform X1
translation: MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT
SIO_010081: CDH12
subclass of: SO_0000673
so part of: CDH12
location: complement(join(9985958..9986457,9989338..9989589,9993978..9994095,9996759..9996880,10015413..10015549,10032006..10032259,10046221..10046408,10077639..10077806,10090334..10090453,10190600..10190894,10263145..10263375))
location: region:9985958-10263375:-1
so has part: feature:10263145-10263375:-1:exon
so has part: feature:10190600-10190894:-1:exon
so has part: feature:10090334-10090453:-1:exon
so has part: feature:10077639-10077806:-1:exon
so has part: feature:10046221-10046408:-1:exon
so has part: feature:10032006-10032259:-1:exon
so has part: feature:10015413-10015549:-1:exon
so has part: feature:9996759-9996880:-1:exon
so has part: feature:9993978-9994095:-1:exon
so has part: feature:9989338-9989589:-1:exon
so has part: feature:9985958-9986457:-1:exon

XP_013840162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10263145-10263375:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:10190600-10190894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:10090334-10090453:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:10077639-10077806:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:10046221-10046408:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:10032006-10032259:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:10015413-10015549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:9996759-9996880:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9993978-9994095:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:9989338-9989589:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:9985958-9986457:-1:exon

CDH10
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: CDH10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(12094687..12277672)
location: region:12094687-12277672:-1
so has part: feature:12094687-12277672:-1:exon
subclass of: SO_0000010

100523754
type: Gene
SIO_000068: ncbigene

position:12094687:-1
position: 12094687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12277672:-1
position: 12277672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12094687-12277672:-1:exon

CDH10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH10
product: cadherin 10, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 7 ESTs, 4 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_021076631.1
SIO_010081: CDH10
subclass of: SO_0000673
so part of: CDH10
location: complement(join(12094687..12095741,12098201..12098452,12102686..12102794,12110576..12110697,12115613..12115749,12116517..12116770,12118059..12118246,12145286..12145453,12145875..12146020,12147791..12148085,12206038..12206393,12276734..12277672))
location: region:12094687-12277672:-1
so has part: feature:12276734-12277672:-1:exon
so has part: feature:12206038-12206393:-1:exon
so has part: feature:12147791-12148085:-1:exon
so has part: feature:12145875-12146020:-1:exon
so has part: feature:12145286-12145453:-1:exon
so has part: feature:12118059-12118246:-1:exon
so has part: feature:12116517-12116770:-1:exon
so has part: feature:12115613-12115749:-1:exon
so has part: feature:12110576-12110697:-1:exon
so has part: feature:12102686-12102794:-1:exon
so has part: feature:12098201-12098452:-1:exon
so has part: feature:12094687-12095741:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12276734-12277672:-1:exon

position:12276734:-1
position: 12276734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12206038-12206393:-1:exon

position:12206038:-1
position: 12206038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12206393:-1
position: 12206393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:12147791-12148085:-1:exon

position:12147791:-1
position: 12147791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12148085:-1
position: 12148085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:12145875-12146020:-1:exon

position:12145875:-1
position: 12145875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12146020:-1
position: 12146020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12145286-12145453:-1:exon

position:12145286:-1
position: 12145286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12145453:-1
position: 12145453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:12118059-12118246:-1:exon

position:12118059:-1
position: 12118059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12118246:-1
position: 12118246
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:12116517-12116770:-1:exon

position:12116517:-1
position: 12116517
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12116770:-1
position: 12116770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:12115613-12115749:-1:exon

position:12115613:-1
position: 12115613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12115749:-1
position: 12115749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:12110576-12110697:-1:exon

position:12110576:-1
position: 12110576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12110697:-1
position: 12110697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:12102686-12102794:-1:exon

position:12102686:-1
position: 12102686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12102794:-1
position: 12102794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:12098201-12098452:-1:exon

position:12098201:-1
position: 12098201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12098452:-1
position: 12098452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:12094687-12095741:-1:exon

position:12095741:-1
position: 12095741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDH10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH10
product: cadherin 10, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 long SRA read, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_021076630.1
SIO_010081: CDH10
subclass of: SO_0000673
so part of: CDH10
location: complement(join(12094688..12095735,12098201..12098452,12102686..12102794,12110576..12110697,12115613..12115749,12116517..12116770,12118059..12118246,12145286..12145453,12145875..12145994,12147791..12148085,12206038..12206393,12276734..12277662))
location: region:12094688-12277662:-1
so has part: feature:12276734-12277662:-1:exon
so has part: feature:12206038-12206393:-1:exon
so has part: feature:12147791-12148085:-1:exon
so has part: feature:12145875-12145994:-1:exon
so has part: feature:12145286-12145453:-1:exon
so has part: feature:12118059-12118246:-1:exon
so has part: feature:12116517-12116770:-1:exon
so has part: feature:12115613-12115749:-1:exon
so has part: feature:12110576-12110697:-1:exon
so has part: feature:12102686-12102794:-1:exon
so has part: feature:12098201-12098452:-1:exon
so has part: feature:12094688-12095735:-1:exon

position:12094688:-1
position: 12094688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12277662:-1
position: 12277662
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12276734-12277662:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12206038-12206393:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12147791-12148085:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12145875-12145994:-1:exon

position:12145994:-1
position: 12145994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:12145286-12145453:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12118059-12118246:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12116517-12116770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12115613-12115749:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:12110576-12110697:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:12102686-12102794:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:12098201-12098452:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:12094688-12095735:-1:exon

position:12095735:-1
position: 12095735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDH10
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH10
product: cadherin 10, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 28 long SRA reads, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_021076629.1
SIO_010081: CDH10
subclass of: SO_0000673
so part of: CDH10
location: complement(join(12094688..12095741,12098201..12098452,12102686..12102794,12110576..12110697,12115613..12115749,12116517..12116770,12118059..12118246,12145286..12145453,12145875..12145994,12147791..12148085,12206038..12206393,12276734..12277660))
location: region:12094688-12277660:-1
so has part: feature:12276734-12277660:-1:exon
so has part: feature:12206038-12206393:-1:exon
so has part: feature:12147791-12148085:-1:exon
so has part: feature:12145875-12145994:-1:exon
so has part: feature:12145286-12145453:-1:exon
so has part: feature:12118059-12118246:-1:exon
so has part: feature:12116517-12116770:-1:exon
so has part: feature:12115613-12115749:-1:exon
so has part: feature:12110576-12110697:-1:exon
so has part: feature:12102686-12102794:-1:exon
so has part: feature:12098201-12098452:-1:exon
so has part: feature:12094688-12095741:-1:exon

position:12277660:-1
position: 12277660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12276734-12277660:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12206038-12206393:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12147791-12148085:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12145875-12145994:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12145286-12145453:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12118059-12118246:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12116517-12116770:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12115613-12115749:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:12110576-12110697:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:12102686-12102794:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:12098201-12098452:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:12094688-12095741:-1:exon

CDH10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-10 isoform X2
translation: MTIYQFLLLFLLWVCLPHFCSPEIMFKRTPVPQKRVLGARTPRSDGKILHRQKRGWMWNQFFLLEEYTGSDYQYVGKLHSDQDKGDGSLKYILSGDGAGTLFIIDEKTGDIHATRRIDREEKAFYTLRAQAINRRTLRPVEPESEFVIKIHDINDNEPTFPEEIYTASVPEMSVVGTSVVQVTATDADDPSYGNSARVIYSILQGQPYFSVEPETGIIRTALPNMNRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQNTIHLRVLESSPVGTAIGSVKATDADTGKNAEVEYRIIDGDGTDMFDIITEKDTQEGIITVKKPLDYESRRLYTLKVEAENTHVDPRFYYLGPFKDTTIVKISIEDVDEPPVFSRSSYLFEVHEDIEVGTIIGTVMARDPDSTSSPIRFSLDRHTDLDRIFNIHSGNGSLYTSKPLDRELSQWHNLTVIAAEINNPKEMTRVAVFVRILDVNDNAPQFAVFYDTFVCENARPGQLIQTISAVDKDDPLGGQKFFFSLAAVNPNFTVQDNEDNTARILTRKNGFNRHEISTYLLPVVISDNDYPIQSSTGTLTIRVCACDSQGNMQSCSAEALLLPAGLSTGALIAILLCIIILLVVLFAALKRQRKKEPLILSKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIEEKKLRRDIIPETLFIPRRTPTAPDNTDVRDFINERLKEHDLDPTAPPYDSLATYAYEGNDSIAESLSSLESGTTDGDQNYDYLREWGPRFNKLAEMYGGGESDKDS
SIO_010081: CDH10
subclass of: SO_0000673
so part of: CDH10
location: complement(join(12095251..12095735,12098201..12098452,12102686..12102794,12110576..12110697,12115613..12115749,12116517..12116770,12118059..12118246,12145286..12145453,12145875..12145994,12147791..12148085,12206038..12206268))
location: region:12095251-12206268:-1
so has part: feature:12206038-12206268:-1:exon
so has part: feature:12147791-12148085:-1:exon
so has part: feature:12145875-12145994:-1:exon
so has part: feature:12145286-12145453:-1:exon
so has part: feature:12118059-12118246:-1:exon
so has part: feature:12116517-12116770:-1:exon
so has part: feature:12115613-12115749:-1:exon
so has part: feature:12110576-12110697:-1:exon
so has part: feature:12102686-12102794:-1:exon
so has part: feature:12098201-12098452:-1:exon
so has part: feature:12095251-12095735:-1:exon

XP_020932289.1
type: Protein
SIO_000068: ncbiprotein

position:12095251:-1
position: 12095251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12206268:-1
position: 12206268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12206038-12206268:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12147791-12148085:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12145875-12145994:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12145286-12145453:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12118059-12118246:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12116517-12116770:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12115613-12115749:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12110576-12110697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:12102686-12102794:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:12098201-12098452:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:12095251-12095735:-1:exon

CDH10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-10 isoform X1
translation: MTIYQFLLLFLLWVCLPHFCSPEIMFKRTPVPQKRVLGARTPRSDGKILHRQKRGWMWNQFFLLEEYTGSDYQYVGKLHSDQDKGDGSLKYILSGDGAGTLFIIDEKTGDIHATRRIDREEKAFYTLRAQAINRRTLRPVEPESEFVIKIHDINDNEPTFPEEIYTASVPEMSVVGTSVVQVTATDADDPSYGNSARVIYSILQGQPYFSVEPETGIIRTALPNMNRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQNTIHLRVLESSPVGTAIGSVKATDADTGKNAEVEYRIIDGDGTDMFDIITEKDTQEGIITVKKPLDYESRRLYTLKVEAENTHVDPRFYYLGPFKDTTIVKISIEDVDEPPVFSRSSYLFEVHEDIEVGTIIGTVMARDPDSTSSPIRFSLDRHTDLDRIFNIHSGNGSLYTSKPLDRELSQWHNLTVIAAEINNPKEMTRVAVFVRILDVNDNAPQFAVFYDTFVCENARPGQLIQTISAVDKDDPLGGQKFFFSLAAVNPNFTVQDNEDNTARILTRKNGFNRHEISTYLLPVVISDNDYPIQSSTGTLTIRVCACDSQGNMQSCSAEALLLPAGLSTGALIAILLCIIILLVIVVLFAALKRQRKKEPLILSKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIEEKKLRRDIIPETLFIPRRTPTAPDNTDVRDFINERLKEHDLDPTAPPYDSLATYAYEGNDSIAESLSSLESGTTDGDQNYDYLREWGPRFNKLAEMYGGGESDKDS
SIO_010081: CDH10
subclass of: SO_0000673
so part of: CDH10
location: complement(join(12095251..12095741,12098201..12098452,12102686..12102794,12110576..12110697,12115613..12115749,12116517..12116770,12118059..12118246,12145286..12145453,12145875..12145994,12147791..12148085,12206038..12206268))
location: region:12095251-12206268:-1
so has part: feature:12206038-12206268:-1:exon
so has part: feature:12147791-12148085:-1:exon
so has part: feature:12145875-12145994:-1:exon
so has part: feature:12145286-12145453:-1:exon
so has part: feature:12118059-12118246:-1:exon
so has part: feature:12116517-12116770:-1:exon
so has part: feature:12115613-12115749:-1:exon
so has part: feature:12110576-12110697:-1:exon
so has part: feature:12102686-12102794:-1:exon
so has part: feature:12098201-12098452:-1:exon
so has part: feature:12095251-12095741:-1:exon

XP_020932288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12206038-12206268:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12147791-12148085:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12145875-12145994:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12145286-12145453:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12118059-12118246:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12116517-12116770:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12115613-12115749:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12110576-12110697:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:12102686-12102794:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:12098201-12098452:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:12095251-12095741:-1:exon

CDH10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH10
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-10 isoform X3
translation: MNRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQNTIHLRVLESSPVGTAIGSVKATDADTGKNAEVEYRIIDGDGTDMFDIITEKDTQEGIITVKKPLDYESRRLYTLKVEAENTHVDPRFYYLGPFKDTTIVKISIEDVDEPPVFSRSSYLFEVHEDIEVGTIIGTVMARDPDSTSSPIRFSLDRHTDLDRIFNIHSGNGSLYTSKPLDRELSQWHNLTVIAAEINNPKEMTRVAVFVRILDVNDNAPQFAVFYDTFVCENARPGQLIQTISAVDKDDPLGGQKFFFSLAAVNPNFTVQDNEDNTARILTRKNGFNRHEISTYLLPVVISDNDYPIQSSTGTLTIRVCACDSQGNMQSCSAEALLLPAGLSTGALIAILLCIIILLVIVVLFAALKRQRKKEPLILSKEDIRDNIVSYNDEGGGEEDTQAFDIGTLRNPAAIEEKKLRRDIIPETLFIPRRTPTAPDNTDVRDFINERLKEHDLDPTAPPYDSLATYAYEGNDSIAESLSSLESGTTDGDQNYDYLREWGPRFNKLAEMYGGGESDKDS
SIO_010081: CDH10
subclass of: SO_0000673
so part of: CDH10
location: complement(join(12095251..12095741,12098201..12098452,12102686..12102794,12110576..12110697,12115613..12115749,12116517..12116770,12118059..12118246,12145286..12145427))
location: region:12095251-12145427:-1
so has part: feature:12145286-12145427:-1:exon
so has part: feature:12118059-12118246:-1:exon
so has part: feature:12116517-12116770:-1:exon
so has part: feature:12115613-12115749:-1:exon
so has part: feature:12110576-12110697:-1:exon
so has part: feature:12102686-12102794:-1:exon
so has part: feature:12098201-12098452:-1:exon
so has part: feature:12095251-12095741:-1:exon

XP_020932290.1
type: Protein
SIO_000068: ncbiprotein

position:12145427:-1
position: 12145427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12145286-12145427:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:12118059-12118246:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:12116517-12116770:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:12115613-12115749:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:12110576-12110697:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:12102686-12102794:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12098201-12098452:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:12095251-12095741:-1:exon

LOC110257224
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257224
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 12987705..13020407
location: region:12987705-13020407:1
so has part: feature:12987705-13020407:1:exon
subclass of: SO_0000011

110257224
type: Gene
SIO_000068: ncbigene

position:12987705:1
position: 12987705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13020407:1
position: 13020407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12987705-13020407:1:exon

LOC110257224
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257224
product: uncharacterized LOC110257224
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_002339535.1
SIO_010081: LOC110257224
subclass of: SO_0000673
so part of: LOC110257224
location: join(12987705..12987805,12988240..12988280,13020294..13020407)
location: region:12987705-13020407:1
so has part: feature:12987705-12987805:1:exon
so has part: feature:12988240-12988280:1:exon
so has part: feature:13020294-13020407:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12987705-12987805:1:exon

position:12987805:1
position: 12987805
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:12988240-12988280:1:exon

position:12988240:1
position: 12988240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12988280:1
position: 12988280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13020294-13020407:1:exon

position:13020294:1
position: 13020294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC110257219
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257219
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 13639088..13647666
location: region:13639088-13647666:1
so has part: feature:13639088-13647666:1:exon
subclass of: SO_0000011

110257219
type: Gene
SIO_000068: ncbigene

position:13639088:1
position: 13639088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13647666:1
position: 13647666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13639088-13647666:1:exon

LOC110257219
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257219
product: uncharacterized LOC110257219
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_002339528.1
SIO_010081: LOC110257219
subclass of: SO_0000673
so part of: LOC110257219
location: join(13639088..13639172,13639299..13639454,13647399..13647666)
location: region:13639088-13647666:1
so has part: feature:13639088-13639172:1:exon
so has part: feature:13639299-13639454:1:exon
so has part: feature:13647399-13647666:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13639088-13639172:1:exon

position:13639172:1
position: 13639172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:13639299-13639454:1:exon

position:13639299:1
position: 13639299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13639454:1
position: 13639454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13647399-13647666:1:exon

position:13647399:1
position: 13647399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDH9
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: CDH9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(13938711..14076498)
location: region:13938711-14076498:-1
so has part: feature:13938711-14076498:-1:exon
subclass of: SO_0000010

100626823
type: Gene
SIO_000068: ncbigene

position:13938711:-1
position: 13938711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14076498:-1
position: 14076498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13938711-14076498:-1:exon

CDH9
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH9
product: cadherin 9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 3 long SRA reads, 22 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_021076628.1
SIO_010081: CDH9
subclass of: SO_0000673
so part of: CDH9
location: complement(join(13938711..13945265,13950378..13950629,13950721..13950838,13955896..13956017,13956562..13956698,13968284..13968537,13969526..13969713,13971812..13971979,13972573..13972692,13980860..13981154,14031878..14032153,14075827..14076498))
location: region:13938711-14076498:-1
so has part: feature:14075827-14076498:-1:exon
so has part: feature:14031878-14032153:-1:exon
so has part: feature:13980860-13981154:-1:exon
so has part: feature:13972573-13972692:-1:exon
so has part: feature:13971812-13971979:-1:exon
so has part: feature:13969526-13969713:-1:exon
so has part: feature:13968284-13968537:-1:exon
so has part: feature:13956562-13956698:-1:exon
so has part: feature:13955896-13956017:-1:exon
so has part: feature:13950721-13950838:-1:exon
so has part: feature:13950378-13950629:-1:exon
so has part: feature:13938711-13945265:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14075827-14076498:-1:exon

position:14075827:-1
position: 14075827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:14031878-14032153:-1:exon

position:14031878:-1
position: 14031878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14032153:-1
position: 14032153
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:13980860-13981154:-1:exon

position:13980860:-1
position: 13980860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13981154:-1
position: 13981154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:13972573-13972692:-1:exon

position:13972573:-1
position: 13972573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13972692:-1
position: 13972692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:13971812-13971979:-1:exon

position:13971812:-1
position: 13971812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13971979:-1
position: 13971979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:13969526-13969713:-1:exon

position:13969526:-1
position: 13969526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13969713:-1
position: 13969713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:13968284-13968537:-1:exon

position:13968284:-1
position: 13968284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13968537:-1
position: 13968537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:13956562-13956698:-1:exon

position:13956562:-1
position: 13956562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13956698:-1
position: 13956698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:13955896-13956017:-1:exon

position:13955896:-1
position: 13955896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13956017:-1
position: 13956017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:13950721-13950838:-1:exon

position:13950721:-1
position: 13950721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13950838:-1
position: 13950838
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:13950378-13950629:-1:exon

position:13950378:-1
position: 13950378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13950629:-1
position: 13950629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:13938711-13945265:-1:exon

position:13945265:-1
position: 13945265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CDH9
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH9
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cadherin-9
translation: MRTYHCLPLFIWTYMFHAIDAIPFQEKTNSNLPNERIVSLTQDEGKILHRTKRGWMWNQFFLLEEYTGTDTQYVGKLHTDQDKGDGNLKYILTGDGAGSLFVIDENTGDIHAAKKLDREEKSLYVLRAKAIDRKTGRQVEPESEFIIKIHDINDNEPKFTKDLYTASVPEMSGVGTSVIQVTATDADDANYGNSAKVVYSILQGQPYFSVDPESGIIKTALPDMSRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNNNPPRFPQSMYQFHSPESVPLGTHLGRIKANDPDLGENAEMEYSIAEGEGADMFDVITDKDTQEGIITVKQNLDFESKMLYTLKVDASNTHPDPRFLHLGPFKDTAVVKISVEDIDEPPVFSKIFYLIEVDEDVKEGSIIGQVTAYDPDAMNNLIKYSVDRHTDMDWIFSIHSENGSIFTLKPLDRESTPWHNITITATEINNSKQSSHIPVFIRILDINDHAPEFAMYYETFVCENAKPGQLIQTVSVMDKDDPPRGHKFFFEPVPDFPLNPNFTIVDNKDNTAGIMTRKNGYSRNKMSTYLLPILIFDNDYPIQSSTGTLTIRVCACDNQGNMQSCNAEALVLSAGLSTGALIAILLCVIILLVLVVLFAALKRQRKKEPLIISKDDVRDNIVTYNDEGGGEEDTQAFDIGTLRNPEAREDSKLRRDVMPETIFQIRRTVPLWENIDVQDFIHRRLKENDSDPTAPPYDSLATYAYEGNDSIADSLSSLESLTADCNQDYDYLSDWGPRFKKLADMYGGDDSDRD
SIO_010081: CDH9
subclass of: SO_0000673
so part of: CDH9
location: complement(join(13944778..13945265,13950378..13950629,13950721..13950838,13955896..13956017,13956562..13956698,13968284..13968537,13969526..13969713,13971812..13971979,13972573..13972692,13980860..13981154,14031878..14032105))
location: region:13944778-14032105:-1
so has part: feature:14031878-14032105:-1:exon
so has part: feature:13980860-13981154:-1:exon
so has part: feature:13972573-13972692:-1:exon
so has part: feature:13971812-13971979:-1:exon
so has part: feature:13969526-13969713:-1:exon
so has part: feature:13968284-13968537:-1:exon
so has part: feature:13956562-13956698:-1:exon
so has part: feature:13955896-13956017:-1:exon
so has part: feature:13950721-13950838:-1:exon
so has part: feature:13950378-13950629:-1:exon
so has part: feature:13944778-13945265:-1:exon

XP_020932287.1
type: Protein
SIO_000068: ncbiprotein

position:13944778:-1
position: 13944778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14032105:-1
position: 14032105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14031878-14032105:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:13980860-13981154:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:13972573-13972692:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:13971812-13971979:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13969526-13969713:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13968284-13968537:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:13956562-13956698:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:13955896-13956017:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13950721-13950838:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13950378-13950629:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:13944778-13945265:-1:exon

LOC100623929
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100623929
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(14706763..14707412)
location: region:14706763-14707412:-1
so has part: feature:14706763-14707412:-1:exon

100623929
type: Gene
SIO_000068: ncbigene

position:14706763:-1
position: 14706763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14707412:-1
position: 14707412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14706763-14707412:-1:exon

LOC100623929
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100623929
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC100623929
subclass of: SO_0000673
so part of: LOC100623929
location: complement(14706763..14707412)
location: region:14706763-14707412:-1
so has part: feature:14706763-14707412:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:14706763-14707412:-1:exon

LOC100626931
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100626931
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(14970412..14985935)
location: region:14970412-14985935:-1
so has part: feature:14970412-14985935:-1:exon

100626931
type: Gene
SIO_000068: ncbigene

position:14970412:-1
position: 14970412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14985935:-1
position: 14985935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14970412-14985935:-1:exon

LOC100626931
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100626931
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
pseudo: true
SIO_010081: LOC100626931
subclass of: SO_0000673
so part of: LOC100626931
location: complement(14970412..14970967)
location: region:14970412-14970967:-1
so has part: feature:14970412-14970967:-1:exon

position:14970967:-1
position: 14970967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14970412-14970967:-1:exon

LOC100626931
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100626931
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
pseudo: true
SIO_010081: LOC100626931
subclass of: SO_0000673
so part of: LOC100626931
location: complement(14985932..14985935)
location: region:14985932-14985935:-1
so has part: feature:14985932-14985935:-1:exon

position:14985932:-1
position: 14985932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14985932-14985935:-1:exon

LOC110257286
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257286
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(15518199..15518968)
location: region:15518199-15518968:-1
so has part: feature:15518199-15518968:-1:exon
subclass of: SO_0000011

110257286
type: Gene
SIO_000068: ncbigene

position:15518199:-1
position: 15518199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15518968:-1
position: 15518968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15518199-15518968:-1:exon

LOC110257286
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257286
product: uncharacterized LOC110257286
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_002339700.1
SIO_010081: LOC110257286
subclass of: SO_0000673
so part of: LOC110257286
location: complement(join(15518199..15518289,15518658..15518777,15518882..15518968))
location: region:15518199-15518968:-1
so has part: feature:15518882-15518968:-1:exon
so has part: feature:15518658-15518777:-1:exon
so has part: feature:15518199-15518289:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15518882-15518968:-1:exon

position:15518882:-1
position: 15518882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15518658-15518777:-1:exon

position:15518658:-1
position: 15518658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15518777:-1
position: 15518777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15518199-15518289:-1:exon

position:15518289:-1
position: 15518289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC110257287
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257287
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15518269..15693429
location: region:15518269-15693429:1
so has part: feature:15518269-15693429:1:exon
subclass of: SO_0000011

110257287
type: Gene
SIO_000068: ncbigene

position:15518269:1
position: 15518269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15693429:1
position: 15693429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15518269-15693429:1:exon

LOC110257287
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257287
product: uncharacterized LOC110257287
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_002339701.1
SIO_010081: LOC110257287
subclass of: SO_0000673
so part of: LOC110257287
location: join(15518269..15518336,15690091..15690157,15693229..15693429)
location: region:15518269-15693429:1
so has part: feature:15518269-15518336:1:exon
so has part: feature:15690091-15690157:1:exon
so has part: feature:15693229-15693429:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15518269-15518336:1:exon

position:15518336:1
position: 15518336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15690091-15690157:1:exon

position:15690091:1
position: 15690091
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15690157:1
position: 15690157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15693229-15693429:1:exon

position:15693229:1
position: 15693229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC110257293
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257293
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 15871698..15911386
location: region:15871698-15911386:1
so has part: feature:15871698-15911386:1:exon
subclass of: SO_0000011

110257293
type: Gene
SIO_000068: ncbigene

position:15871698:1
position: 15871698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15911386:1
position: 15911386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15871698-15911386:1:exon

LOC110257293
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257293
product: uncharacterized LOC110257293
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_002339717.1
SIO_010081: LOC110257293
subclass of: SO_0000673
so part of: LOC110257293
location: join(15871698..15871847,15879714..15879761,15910640..15911386)
location: region:15871698-15911386:1
so has part: feature:15871698-15871847:1:exon
so has part: feature:15879714-15879761:1:exon
so has part: feature:15910640-15911386:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15871698-15871847:1:exon

position:15871847:1
position: 15871847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:15879714-15879761:1:exon

position:15879714:1
position: 15879714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15879761:1
position: 15879761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:15910640-15911386:1:exon

position:15910640:1
position: 15910640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC110257330
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257330
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(16461329..16544692)
location: region:16461329-16544692:-1
so has part: feature:16461329-16544692:-1:exon

110257330
type: Gene
SIO_000068: ncbigene

position:16461329:-1
position: 16461329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16544692:-1
position: 16544692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16461329-16544692:-1:exon

LOC110257330
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC110257330
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC110257330
subclass of: SO_0000673
so part of: LOC110257330
location: complement(16461329..16463646)
location: region:16461329-16463646:-1
so has part: feature:16461329-16463646:-1:exon

position:16463646:-1
position: 16463646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16461329-16463646:-1:exon

LOC110257330
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC110257330
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC110257330
subclass of: SO_0000673
so part of: LOC110257330
location: complement(16543950..16544149)
location: region:16543950-16544149:-1
so has part: feature:16543950-16544149:-1:exon

position:16543950:-1
position: 16543950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16544149:-1
position: 16544149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16543950-16544149:-1:exon

LOC110257330
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC110257330
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC110257330
subclass of: SO_0000673
so part of: LOC110257330
location: complement(16544404..16544692)
location: region:16544404-16544692:-1
so has part: feature:16544404-16544692:-1:exon

position:16544404:-1
position: 16544404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16544404-16544692:-1:exon

LOC110257326
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257326
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(16573962..16593399)
location: region:16573962-16593399:-1
so has part: feature:16573962-16593399:-1:exon
subclass of: SO_0000011

110257326
type: Gene
SIO_000068: ncbigene

position:16573962:-1
position: 16573962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16593399:-1
position: 16593399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16573962-16593399:-1:exon

LOC110257326
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257326
product: uncharacterized LOC110257326
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_002339797.1
SIO_010081: LOC110257326
subclass of: SO_0000673
so part of: LOC110257326
location: complement(join(16573962..16574075,16583507..16583688,16593227..16593399))
location: region:16573962-16593399:-1
so has part: feature:16593227-16593399:-1:exon
so has part: feature:16583507-16583688:-1:exon
so has part: feature:16573962-16574075:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16593227-16593399:-1:exon

position:16593227:-1
position: 16593227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:16583507-16583688:-1:exon

position:16583507:-1
position: 16583507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16583688:-1
position: 16583688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:16573962-16574075:-1:exon

position:16574075:-1
position: 16574075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC106506459
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC106506459
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(17138426..17491043)
location: region:17138426-17491043:-1
so has part: feature:17138426-17491043:-1:exon
subclass of: SO_0000011

106506459
type: Gene
SIO_000068: ncbigene

position:17138426:-1
position: 17138426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17491043:-1
position: 17491043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17138426-17491043:-1:exon

LOC106506459
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC106506459
product: uncharacterized LOC106506459
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_002339789.1
SIO_010081: LOC106506459
subclass of: SO_0000673
so part of: LOC106506459
location: complement(join(17138426..17147140,17202217..17202267,17490482..17491043))
location: region:17138426-17491043:-1
so has part: feature:17490482-17491043:-1:exon
so has part: feature:17202217-17202267:-1:exon
so has part: feature:17138426-17147140:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17490482-17491043:-1:exon

position:17490482:-1
position: 17490482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17202217-17202267:-1:exon

position:17202217:-1
position: 17202217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17202267:-1
position: 17202267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17138426-17147140:-1:exon

position:17147140:-1
position: 17147140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC110257323
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257323
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17416712..17467176
location: region:17416712-17467176:1
so has part: feature:17416712-17467176:1:exon
subclass of: SO_0000011

110257323
type: Gene
SIO_000068: ncbigene

position:17416712:1
position: 17416712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17467176:1
position: 17467176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17416712-17467176:1:exon

LOC110257323
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257323
product: uncharacterized LOC110257323, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_002339787.1
SIO_010081: LOC110257323
subclass of: SO_0000673
so part of: LOC110257323
location: join(17416712..17417934,17452038..17452294,17466965..17467176)
location: region:17416712-17467176:1
so has part: feature:17416712-17417934:1:exon
so has part: feature:17452038-17452294:1:exon
so has part: feature:17466965-17467176:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17416712-17417934:1:exon

position:17417934:1
position: 17417934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17452038-17452294:1:exon

position:17452038:1
position: 17452038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17452294:1
position: 17452294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17466965-17467176:1:exon

position:17466965:1
position: 17466965
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC110257323
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257323
product: uncharacterized LOC110257323, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_002339785.1
SIO_010081: LOC110257323
subclass of: SO_0000673
so part of: LOC110257323
location: join(17416712..17417934,17452038..17452242,17464504..17464566,17466762..17467176)
location: region:17416712-17467176:1
so has part: feature:17416712-17417934:1:exon
so has part: feature:17452038-17452242:1:exon
so has part: feature:17464504-17464566:1:exon
so has part: feature:17466762-17467176:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17416712-17417934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17452038-17452242:1:exon

position:17452242:1
position: 17452242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17464504-17464566:1:exon

position:17464504:1
position: 17464504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17464566:1
position: 17464566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:17466762-17467176:1:exon

position:17466762:1
position: 17466762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC110257323
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257323
product: uncharacterized LOC110257323, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_002339786.1
SIO_010081: LOC110257323
subclass of: SO_0000673
so part of: LOC110257323
location: join(17416712..17417934,17452038..17452242,17464504..17464566,17466762..17466863,17466965..17467176)
location: region:17416712-17467176:1
so has part: feature:17416712-17417934:1:exon
so has part: feature:17452038-17452242:1:exon
so has part: feature:17464504-17464566:1:exon
so has part: feature:17466762-17466863:1:exon
so has part: feature:17466965-17467176:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17416712-17417934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17452038-17452242:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17464504-17464566:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17466762-17466863:1:exon

position:17466863:1
position: 17466863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:17466965-17467176:1:exon

LOC110257323
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257323
product: uncharacterized LOC110257323, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_002339788.1
SIO_010081: LOC110257323
subclass of: SO_0000673
so part of: LOC110257323
location: join(17416712..17417934,17452038..17452242,17466965..17467176)
location: region:17416712-17467176:1
so has part: feature:17416712-17417934:1:exon
so has part: feature:17452038-17452242:1:exon
so has part: feature:17466965-17467176:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17416712-17417934:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17452038-17452242:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17466965-17467176:1:exon

CDH6
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: CDH6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17531862..17660081
location: region:17531862-17660081:1
so has part: feature:17531862-17660081:1:exon
subclass of: SO_0000010

100627510
type: Gene
SIO_000068: ncbigene

position:17531862:1
position: 17531862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17660081:1
position: 17660081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17531862-17660081:1:exon

CDH6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: CDH6
product: cadherin 6
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 18 long SRA reads, 15 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_003359736.5
SIO_010081: CDH6
subclass of: SO_0000673
so part of: CDH6
location: join(17531862..17532076,17602886..17603242,17629228..17629522,17633276..17633395,17635665..17635832,17638783..17638969,17641342..17641595,17647169..17647305,17649828..17649949,17651520..17651637,17651770..17652021,17657277..17660081)
location: region:17531862-17660081:1
so has part: feature:17531862-17532076:1:exon
so has part: feature:17602886-17603242:1:exon
so has part: feature:17629228-17629522:1:exon
so has part: feature:17633276-17633395:1:exon
so has part: feature:17635665-17635832:1:exon
so has part: feature:17638783-17638969:1:exon
so has part: feature:17641342-17641595:1:exon
so has part: feature:17647169-17647305:1:exon
so has part: feature:17649828-17649949:1:exon
so has part: feature:17651520-17651637:1:exon
so has part: feature:17651770-17652021:1:exon
so has part: feature:17657277-17660081:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17531862-17532076:1:exon

position:17532076:1
position: 17532076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17602886-17603242:1:exon

position:17602886:1
position: 17602886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17603242:1
position: 17603242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17629228-17629522:1:exon

position:17629228:1
position: 17629228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17629522:1
position: 17629522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:17633276-17633395:1:exon

position:17633276:1
position: 17633276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17633395:1
position: 17633395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:17635665-17635832:1:exon

position:17635665:1
position: 17635665
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17635832:1
position: 17635832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:17638783-17638969:1:exon

position:17638783:1
position: 17638783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17638969:1
position: 17638969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:17641342-17641595:1:exon

position:17641342:1
position: 17641342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17641595:1
position: 17641595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:17647169-17647305:1:exon

position:17647169:1
position: 17647169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17647305:1
position: 17647305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:17649828-17649949:1:exon

position:17649828:1
position: 17649828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17649949:1
position: 17649949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:17651520-17651637:1:exon

position:17651520:1
position: 17651520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17651637:1
position: 17651637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:17651770-17652021:1:exon

position:17651770:1
position: 17651770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17652021:1
position: 17652021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:17657277-17660081:1:exon

position:17657277:1
position: 17657277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDH6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: CDH6
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: cadherin-6
translation: MRTYRYFLLLFWVGQPYPTFSTPLSKRTSGFPAKKRALELSGSSKNELNRSKRSWMWNQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATRRLDREEKPVYILRAQAINRKTGRPVEPESEFIIKIHDINDNEPIFTKEVYTATVPEMSDVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTDVNDNPPRFPQSTYQFKTPNPLHRVHQLAGSKPAMLTWEKMLKLSTALQRERGWTCLMSSPIRKPRKGL
SIO_010081: CDH6
subclass of: SO_0000673
so part of: CDH6
location: join(17603015..17603242,17629228..17629522,17633276..17633395,17635665..17635832,17638783..17638969,17641342..17641595,17647169..17647305,17649828..17649949,17651520..17651637,17651770..17652021,17657277..17657767)
location: region:17603015-17657767:1
so has part: feature:17603015-17603242:1:exon
so has part: feature:17629228-17629522:1:exon
so has part: feature:17633276-17633395:1:exon
so has part: feature:17635665-17635832:1:exon
so has part: feature:17638783-17638969:1:exon
so has part: feature:17641342-17641595:1:exon
so has part: feature:17647169-17647305:1:exon
so has part: feature:17649828-17649949:1:exon
so has part: feature:17651520-17651637:1:exon
so has part: feature:17651770-17652021:1:exon
so has part: feature:17657277-17657767:1:exon

XP_003359784.3
type: Protein
SIO_000068: ncbiprotein

position:17603015:1
position: 17603015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17657767:1
position: 17657767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17603015-17603242:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17629228-17629522:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17633276-17633395:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17635665-17635832:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17638783-17638969:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17641342-17641595:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:17647169-17647305:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:17649828-17649949:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:17651520-17651637:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:17651770-17652021:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:17657277-17657767:1:exon

DROSHA
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: DROSHA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(17727695..17847954)
location: region:17727695-17847954:-1
so has part: feature:17727695-17847954:-1:exon
subclass of: SO_0000010

100524961
type: Gene
SIO_000068: ncbigene

position:17727695:-1
position: 17727695
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17847954:-1
position: 17847954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17727695-17847954:-1:exon

DROSHA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: DROSHA
product: drosha ribonuclease III
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 26 long SRA reads, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_021077126.1
SIO_010081: DROSHA
subclass of: SO_0000673
so part of: DROSHA
location: complement(join(17727695..17727957,17730698..17730744,17731556..17731648,17734243..17734346,17734438..17734520,17736236..17736377,17746881..17746986,17748551..17748708,17750190..17750234,17756252..17756322,17758830..17758932,17763746..17763845,17765164..17765223,17778226..17778286,17778604..17778742,17779252..17779359,17784769..17784876,17786256..17786355,17787982..17788106,17792536..17792705,17803745..17803819,17804793..17804874,17806741..17806812,17814705..17814791,17816076..17816162,17822811..17822891,17826491..17826645,17829215..17829356,17832320..17832551,17832784..17832893,17838278..17838370,17843264..17844097,17845119..17845184,17846804..17847954))
location: region:17727695-17847954:-1
so has part: feature:17846804-17847954:-1:exon
so has part: feature:17845119-17845184:-1:exon
so has part: feature:17843264-17844097:-1:exon
so has part: feature:17838278-17838370:-1:exon
so has part: feature:17832784-17832893:-1:exon
so has part: feature:17832320-17832551:-1:exon
so has part: feature:17829215-17829356:-1:exon
so has part: feature:17826491-17826645:-1:exon
so has part: feature:17822811-17822891:-1:exon
so has part: feature:17816076-17816162:-1:exon
so has part: feature:17814705-17814791:-1:exon
so has part: feature:17806741-17806812:-1:exon
so has part: feature:17804793-17804874:-1:exon
so has part: feature:17803745-17803819:-1:exon
so has part: feature:17792536-17792705:-1:exon
so has part: feature:17787982-17788106:-1:exon
so has part: feature:17786256-17786355:-1:exon
so has part: feature:17784769-17784876:-1:exon
so has part: feature:17779252-17779359:-1:exon
so has part: feature:17778604-17778742:-1:exon
so has part: feature:17778226-17778286:-1:exon
so has part: feature:17765164-17765223:-1:exon
so has part: feature:17763746-17763845:-1:exon
so has part: feature:17758830-17758932:-1:exon
so has part: feature:17756252-17756322:-1:exon
so has part: feature:17750190-17750234:-1:exon
so has part: feature:17748551-17748708:-1:exon
so has part: feature:17746881-17746986:-1:exon
so has part: feature:17736236-17736377:-1:exon
so has part: feature:17734438-17734520:-1:exon
so has part: feature:17734243-17734346:-1:exon
so has part: feature:17731556-17731648:-1:exon
so has part: feature:17730698-17730744:-1:exon
so has part: feature:17727695-17727957:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17846804-17847954:-1:exon

position:17846804:-1
position: 17846804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17845119-17845184:-1:exon

position:17845119:-1
position: 17845119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17845184:-1
position: 17845184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17843264-17844097:-1:exon

position:17843264:-1
position: 17843264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17844097:-1
position: 17844097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:17838278-17838370:-1:exon

position:17838278:-1
position: 17838278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17838370:-1
position: 17838370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:17832784-17832893:-1:exon

position:17832784:-1
position: 17832784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17832893:-1
position: 17832893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:17832320-17832551:-1:exon

position:17832320:-1
position: 17832320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17832551:-1
position: 17832551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:17829215-17829356:-1:exon

position:17829215:-1
position: 17829215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17829356:-1
position: 17829356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:17826491-17826645:-1:exon

position:17826491:-1
position: 17826491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17826645:-1
position: 17826645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:17822811-17822891:-1:exon

position:17822811:-1
position: 17822811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17822891:-1
position: 17822891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:17816076-17816162:-1:exon

position:17816076:-1
position: 17816076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17816162:-1
position: 17816162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:17814705-17814791:-1:exon

position:17814705:-1
position: 17814705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17814791:-1
position: 17814791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:17806741-17806812:-1:exon

position:17806741:-1
position: 17806741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17806812:-1
position: 17806812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:17804793-17804874:-1:exon

position:17804793:-1
position: 17804793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17804874:-1
position: 17804874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:17803745-17803819:-1:exon

position:17803745:-1
position: 17803745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17803819:-1
position: 17803819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:17792536-17792705:-1:exon

position:17792536:-1
position: 17792536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17792705:-1
position: 17792705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:17787982-17788106:-1:exon

position:17787982:-1
position: 17787982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17788106:-1
position: 17788106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:17786256-17786355:-1:exon

position:17786256:-1
position: 17786256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17786355:-1
position: 17786355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:17784769-17784876:-1:exon

position:17784769:-1
position: 17784769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17784876:-1
position: 17784876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:17779252-17779359:-1:exon

position:17779252:-1
position: 17779252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17779359:-1
position: 17779359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:17778604-17778742:-1:exon

position:17778604:-1
position: 17778604
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17778742:-1
position: 17778742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:17778226-17778286:-1:exon

position:17778226:-1
position: 17778226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17778286:-1
position: 17778286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:17765164-17765223:-1:exon

position:17765164:-1
position: 17765164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17765223:-1
position: 17765223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:17763746-17763845:-1:exon

position:17763746:-1
position: 17763746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17763845:-1
position: 17763845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:17758830-17758932:-1:exon

position:17758830:-1
position: 17758830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17758932:-1
position: 17758932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:17756252-17756322:-1:exon

position:17756252:-1
position: 17756252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17756322:-1
position: 17756322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:17750190-17750234:-1:exon

position:17750190:-1
position: 17750190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17750234:-1
position: 17750234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:17748551-17748708:-1:exon

position:17748551:-1
position: 17748551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17748708:-1
position: 17748708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:17746881-17746986:-1:exon

position:17746881:-1
position: 17746881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17746986:-1
position: 17746986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:17736236-17736377:-1:exon

position:17736236:-1
position: 17736236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17736377:-1
position: 17736377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:17734438-17734520:-1:exon

position:17734438:-1
position: 17734438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17734520:-1
position: 17734520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:17734243-17734346:-1:exon

position:17734243:-1
position: 17734243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17734346:-1
position: 17734346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:17731556-17731648:-1:exon

position:17731556:-1
position: 17731556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17731648:-1
position: 17731648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:17730698-17730744:-1:exon

position:17730698:-1
position: 17730698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17730744:-1
position: 17730744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:17727695-17727957:-1:exon

position:17727957:-1
position: 17727957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DROSHA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: DROSHA
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: ribonuclease 3
translation: MQGSSCHRMSFHPGRGCPRGRGGHGARPSAPAFRPQNLRLLHPQQPPVQYQYEPPSAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFPNHQMRPPFPVPPCFPPMPPPMPCPNNPPVPGAPPGQGAFPFMMPPPSMPHPPPPPVMPQQVNYQYPPGYSNHNFPPPNFNSFQNSSSSFPPSASNSSSPHFRHLPPYPLPKAPSERRSPERLKHYDDHRHRDHSHGRGERHRSLDRRERGRSPDRRRQDGRYRSDYERGRTPPRHRSYERSRERERERHRHRDSRRSPSLERSYKKEYKRSGRSYGLLIVLNLLDAQQNYLGRLLKIQILGPHPRKL
SIO_010081: DROSHA
subclass of: SO_0000673
so part of: DROSHA
location: complement(join(17727827..17727957,17730698..17730744,17731556..17731648,17734243..17734346,17734438..17734520,17736236..17736377,17746881..17746986,17748551..17748708,17750190..17750234,17756252..17756322,17758830..17758932,17763746..17763845,17765164..17765223,17778226..17778286,17778604..17778742,17779252..17779359,17784769..17784876,17786256..17786355,17787982..17788106,17792536..17792705,17803745..17803819,17804793..17804874,17806741..17806812,17814705..17814791,17816076..17816162,17822811..17822891,17826491..17826645,17829215..17829356,17832320..17832551,17832784..17832893,17838278..17838370,17843264..17844097,17845119..17845135))
location: region:17727827-17845135:-1
so has part: feature:17845119-17845135:-1:exon
so has part: feature:17843264-17844097:-1:exon
so has part: feature:17838278-17838370:-1:exon
so has part: feature:17832784-17832893:-1:exon
so has part: feature:17832320-17832551:-1:exon
so has part: feature:17829215-17829356:-1:exon
so has part: feature:17826491-17826645:-1:exon
so has part: feature:17822811-17822891:-1:exon
so has part: feature:17816076-17816162:-1:exon
so has part: feature:17814705-17814791:-1:exon
so has part: feature:17806741-17806812:-1:exon
so has part: feature:17804793-17804874:-1:exon
so has part: feature:17803745-17803819:-1:exon
so has part: feature:17792536-17792705:-1:exon
so has part: feature:17787982-17788106:-1:exon
so has part: feature:17786256-17786355:-1:exon
so has part: feature:17784769-17784876:-1:exon
so has part: feature:17779252-17779359:-1:exon
so has part: feature:17778604-17778742:-1:exon
so has part: feature:17778226-17778286:-1:exon
so has part: feature:17765164-17765223:-1:exon
so has part: feature:17763746-17763845:-1:exon
so has part: feature:17758830-17758932:-1:exon
so has part: feature:17756252-17756322:-1:exon
so has part: feature:17750190-17750234:-1:exon
so has part: feature:17748551-17748708:-1:exon
so has part: feature:17746881-17746986:-1:exon
so has part: feature:17736236-17736377:-1:exon
so has part: feature:17734438-17734520:-1:exon
so has part: feature:17734243-17734346:-1:exon
so has part: feature:17731556-17731648:-1:exon
so has part: feature:17730698-17730744:-1:exon
so has part: feature:17727827-17727957:-1:exon

XP_020932785.1
type: Protein
SIO_000068: ncbiprotein

position:17727827:-1
position: 17727827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17845135:-1
position: 17845135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17845119-17845135:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17843264-17844097:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17838278-17838370:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17832784-17832893:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17832320-17832551:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17829215-17829356:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:17826491-17826645:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:17822811-17822891:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:17816076-17816162:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:17814705-17814791:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:17806741-17806812:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:17804793-17804874:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:17803745-17803819:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:17792536-17792705:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:17787982-17788106:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:17786256-17786355:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:17784769-17784876:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:17779252-17779359:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:17778604-17778742:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:17778226-17778286:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:17765164-17765223:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:17763746-17763845:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:17758830-17758932:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:17756252-17756322:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:17750190-17750234:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:17748551-17748708:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:17746881-17746986:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:17736236-17736377:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:17734438-17734520:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:17734243-17734346:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:17731556-17731648:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:17730698-17730744:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:17727827-17727957:-1:exon

C16H5orf22
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: C16H5orf22
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17848272..17868151
location: region:17848272-17868151:1
so has part: feature:17848272-17868151:1:exon
subclass of: SO_0000010

100627703
type: Gene
SIO_000068: ncbigene

position:17848272:1
position: 17848272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17868151:1
position: 17868151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17848272-17868151:1:exon

C16H5orf22
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: C16H5orf22
product: chromosome 16 C5orf22 homolog
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 4 long SRA reads, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 177 samples with support for all annotated introns
transcript id: XM_003359737.4
SIO_010081: C16H5orf22
subclass of: SO_0000673
so part of: C16H5orf22
location: join(17848272..17848463,17849719..17849864,17851841..17851990,17854602..17855028,17859610..17859672,17859921..17860041,17861880..17861946,17863722..17863861,17867165..17868151)
location: region:17848272-17868151:1
so has part: feature:17848272-17848463:1:exon
so has part: feature:17849719-17849864:1:exon
so has part: feature:17851841-17851990:1:exon
so has part: feature:17854602-17855028:1:exon
so has part: feature:17859610-17859672:1:exon
so has part: feature:17859921-17860041:1:exon
so has part: feature:17861880-17861946:1:exon
so has part: feature:17863722-17863861:1:exon
so has part: feature:17867165-17868151:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17848272-17848463:1:exon

position:17848463:1
position: 17848463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17849719-17849864:1:exon

position:17849719:1
position: 17849719
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17849864:1
position: 17849864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17851841-17851990:1:exon

position:17851841:1
position: 17851841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17851990:1
position: 17851990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:17854602-17855028:1:exon

position:17854602:1
position: 17854602
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17855028:1
position: 17855028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:17859610-17859672:1:exon

position:17859610:1
position: 17859610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17859672:1
position: 17859672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:17859921-17860041:1:exon

position:17859921:1
position: 17859921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17860041:1
position: 17860041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:17861880-17861946:1:exon

position:17861880:1
position: 17861880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17861946:1
position: 17861946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:17863722-17863861:1:exon

position:17863722:1
position: 17863722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17863861:1
position: 17863861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:17867165-17868151:1:exon

position:17867165:1
position: 17867165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C16H5orf22
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: C16H5orf22
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: UPF0489 protein C5orf22 homolog
translation: MSDSAGERPRLRCYPELPVWVVEDHQEVLPFIYRAIGSKHLPASNISFVHFDSHPDLLIPVNMPADTVFDKETLFGELSIENWIMPAVYAGHFSHVIWLHPTWAEQIREGKHHFLVGKDTSTTTIRVTSTDHYFLSDGLYVTEDQLENPKPLQLDVIMVKPYKLCNNQEEKDTVSSAKKPKLALEDGENPASTNGKSYSEGLEKDVVTQKRDQTCLQPSCSCSESQECQTTVSTGEILKILENRDAFILDIDLDFFSVKNPFKEMFTQEEYKILQELYQFKKPGTNLTEEDLVDCVDTRIHQLEI
SIO_010081: C16H5orf22
subclass of: SO_0000673
so part of: C16H5orf22
location: join(17848383..17848463,17849719..17849864,17851841..17851990,17854602..17855028,17859610..17859672,17859921..17860041,17861880..17861946,17863722..17863861,17867165..17867297)
location: region:17848383-17867297:1
so has part: feature:17848383-17848463:1:exon
so has part: feature:17849719-17849864:1:exon
so has part: feature:17851841-17851990:1:exon
so has part: feature:17854602-17855028:1:exon
so has part: feature:17859610-17859672:1:exon
so has part: feature:17859921-17860041:1:exon
so has part: feature:17861880-17861946:1:exon
so has part: feature:17863722-17863861:1:exon
so has part: feature:17867165-17867297:1:exon

XP_003359785.2
type: Protein
SIO_000068: ncbiprotein

position:17848383:1
position: 17848383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17867297:1
position: 17867297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17848383-17848463:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17849719-17849864:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17851841-17851990:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17854602-17855028:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:17859610-17859672:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17859921-17860041:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:17861880-17861946:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:17863722-17863861:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:17867165-17867297:1:exon

LOC100525311
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100525311
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17875623..17903853
location: region:17875623-17903853:1
so has part: feature:17875623-17903853:1:exon
subclass of: SO_0000010

100525311
type: Gene
SIO_000068: ncbigene

position:17875623:1
position: 17875623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17903853:1
position: 17903853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17875623-17903853:1:exon

LOC100525311
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: LOC100525311
product: Golgi phosphoprotein 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 81% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_005672402.2
SIO_010081: LOC100525311
subclass of: SO_0000673
so part of: LOC100525311
location: join(17875623..17875707,17903392..17903853)
location: region:17875623-17903853:1
so has part: feature:17875623-17875707:1:exon
so has part: feature:17903392-17903853:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17875623-17875707:1:exon

position:17875707:1
position: 17875707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:17903392-17903853:1:exon

position:17903392:1
position: 17903392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100525311
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: LOC100525311
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Golgi phosphoprotein 3
translation: MTKEEKQKDTRYPLDAVRMCRNCYLWAAVWEQLAKNLVKIVLTTEKQNFLLFDMTTHPLTNNNIKQRLIKKVQEAVLDKWVNDPHRMDKRLLALIYLAHASDVLENAFAPLLDEQYDLATKRVRQLLDLDPEVECLKASTNEVLWAVVAAFTK
SIO_010081: LOC100525311
subclass of: SO_0000673
so part of: LOC100525311
location: join(17875623..17875707,17903392..17903768)
location: region:17875623-17903768:1
so has part: feature:17875623-17875707:1:exon
so has part: feature:17903392-17903768:1:exon

XP_005672459.2
type: Protein
SIO_000068: ncbiprotein

position:17903768:1
position: 17903768
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17875623-17875707:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:17903392-17903768:1:exon

PDZD2
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: PDZD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 17940113..18355540
location: region:17940113-18355540:1
so has part: feature:17940113-18355540:1:exon
subclass of: SO_0000010

100525132
type: Gene
SIO_000068: ncbigene

position:17940113:1
position: 17940113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18355540:1
position: 18355540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17940113-18355540:1:exon

PDZD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: PDZD2
product: PDZ domain containing 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 6 bases in 6 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 32 ESTs, 40 long SRA reads, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_021077090.1
SIO_010081: PDZD2
subclass of: SO_0000673
so part of: PDZD2
location: join(17940113..17940246,18077796..18078633,18238900..18239404,18249647..18249789,18252743..18252875,18258358..18258513,18291481..18291592,18299107..18299252,18303616..18303735,18304800..18304914,18308771..18308844,18308978..18309203,18310136..18310253,18311899..18312031,18317945..18318026,18319705..18319739,18320463..18320618,18322135..18322933,18328165..18328309,18330212..18330287,18331358..18335255,18336286..18336403,18339911..18340012,18340960..18341230,18344171..18344305,18352673..18355540)
location: region:17940113-18355540:1
so has part: feature:17940113-17940246:1:exon
so has part: feature:18077796-18078633:1:exon
so has part: feature:18238900-18239404:1:exon
so has part: feature:18249647-18249789:1:exon
so has part: feature:18252743-18252875:1:exon
so has part: feature:18258358-18258513:1:exon
so has part: feature:18291481-18291592:1:exon
so has part: feature:18299107-18299252:1:exon
so has part: feature:18303616-18303735:1:exon
so has part: feature:18304800-18304914:1:exon
so has part: feature:18308771-18308844:1:exon
so has part: feature:18308978-18309203:1:exon
so has part: feature:18310136-18310253:1:exon
so has part: feature:18311899-18312031:1:exon
so has part: feature:18317945-18318026:1:exon
so has part: feature:18319705-18319739:1:exon
so has part: feature:18320463-18320618:1:exon
so has part: feature:18322135-18322933:1:exon
so has part: feature:18328165-18328309:1:exon
so has part: feature:18330212-18330287:1:exon
so has part: feature:18331358-18335255:1:exon
so has part: feature:18336286-18336403:1:exon
so has part: feature:18339911-18340012:1:exon
so has part: feature:18340960-18341230:1:exon
so has part: feature:18344171-18344305:1:exon
so has part: feature:18352673-18355540:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:17940113-17940246:1:exon

position:17940246:1
position: 17940246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18077796-18078633:1:exon

position:18077796:1
position: 18077796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18078633:1
position: 18078633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18238900-18239404:1:exon

position:18238900:1
position: 18238900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18239404:1
position: 18239404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18249647-18249789:1:exon

position:18249647:1
position: 18249647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18249789:1
position: 18249789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:18252743-18252875:1:exon

position:18252743:1
position: 18252743
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18252875:1
position: 18252875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:18258358-18258513:1:exon

position:18258358:1
position: 18258358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18258513:1
position: 18258513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:18291481-18291592:1:exon

position:18291481:1
position: 18291481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18291592:1
position: 18291592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:18299107-18299252:1:exon

position:18299107:1
position: 18299107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18299252:1
position: 18299252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:18303616-18303735:1:exon

position:18303616:1
position: 18303616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18303735:1
position: 18303735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:18304800-18304914:1:exon

position:18304800:1
position: 18304800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18304914:1
position: 18304914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:18308771-18308844:1:exon

position:18308771:1
position: 18308771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18308844:1
position: 18308844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:18308978-18309203:1:exon

position:18308978:1
position: 18308978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18309203:1
position: 18309203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:18310136-18310253:1:exon

position:18310136:1
position: 18310136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18310253:1
position: 18310253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:18311899-18312031:1:exon

position:18311899:1
position: 18311899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18312031:1
position: 18312031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:18317945-18318026:1:exon

position:18317945:1
position: 18317945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18318026:1
position: 18318026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:18319705-18319739:1:exon

position:18319705:1
position: 18319705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18319739:1
position: 18319739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:18320463-18320618:1:exon

position:18320463:1
position: 18320463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18320618:1
position: 18320618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:18322135-18322933:1:exon

position:18322135:1
position: 18322135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18322933:1
position: 18322933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:18328165-18328309:1:exon

position:18328165:1
position: 18328165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18328309:1
position: 18328309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:18330212-18330287:1:exon

position:18330212:1
position: 18330212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18330287:1
position: 18330287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:18331358-18335255:1:exon

position:18331358:1
position: 18331358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18335255:1
position: 18335255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:18336286-18336403:1:exon

position:18336286:1
position: 18336286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18336403:1
position: 18336403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:18339911-18340012:1:exon

position:18339911:1
position: 18339911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18340012:1
position: 18340012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:18340960-18341230:1:exon

position:18340960:1
position: 18340960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18341230:1
position: 18341230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:18344171-18344305:1:exon

position:18344171:1
position: 18344171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18344305:1
position: 18344305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:18352673-18355540:1:exon

position:18352673:1
position: 18352673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PDZD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: PDZD2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 6 bases in 6 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: PDZ domain-containing protein 2
translation: MPITQDNAGLHLPLLYRWLQNSLREGGDGPEQRLCQAAIQKLQEYIQLNFAVDESAVPADHSPPGMEICTVYLTKELGDTETVGLSFGNIPVFGDYGEKRRGGKKRKTHQGPVLDVGCIWVTELRKNSPAGKSGKVRLRDEILSLNGQLMVGVDVSGASYLAEQCWNGGFIYLIMLRRFKHKVHSPYNGNSSNSSEPGETPTLELGDRTVKKGKRARKFGVIARPSPNKASEDSKSSPGGELDNDPISELGNGLDPELGNGHAASELENGPDSLKEVAGSHLDRSELDRGTEPQIPRIDAPLATSSDKRRFSKSGKTDFQSSNCLAKEEVGRIWKMELLKESDGLGIQVSGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGVVQLVVASKETSEEDLLRLTSKSLPDLTSSVEDVSSWTDNEDQEPDGEEDEGTGSSSAQGAMPGTEEPQDSCGPEESKGNLESPKQGSNKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRARILEVSRDGRKHSLPQLLDSTGSAQEYHIVKKSTRSLSTTQVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPNFNASTGTSAVGADEGSSSSLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANPSPGLGTPLKSPSLAKKDSLTSESDLSQFFSHDVPGPLSDFMVAGSEDEDPREVAAAAPRTAACQPAHPLTRNQEKPEPTAL
SIO_010081: PDZD2
subclass of: SO_0000673
so part of: PDZD2
location: join(18078158..18078633,18238900..18239404,18249647..18249789,18252743..18252875,18258358..18258513,18291481..18291592,18299107..18299252,18303616..18303735,18304800..18304914,18308771..18308844,18308978..18309203,18310136..18310253,18311899..18312031,18317945..18318026,18319705..18319739,18320463..18320618,18322135..18322933,18328165..18328309,18330212..18330287,18331358..18335255,18336286..18336403,18339911..18340012,18340960..18341230,18344171..18344305,18352673..18352854)
location: region:18078158-18352854:1
so has part: feature:18078158-18078633:1:exon
so has part: feature:18238900-18239404:1:exon
so has part: feature:18249647-18249789:1:exon
so has part: feature:18252743-18252875:1:exon
so has part: feature:18258358-18258513:1:exon
so has part: feature:18291481-18291592:1:exon
so has part: feature:18299107-18299252:1:exon
so has part: feature:18303616-18303735:1:exon
so has part: feature:18304800-18304914:1:exon
so has part: feature:18308771-18308844:1:exon
so has part: feature:18308978-18309203:1:exon
so has part: feature:18310136-18310253:1:exon
so has part: feature:18311899-18312031:1:exon
so has part: feature:18317945-18318026:1:exon
so has part: feature:18319705-18319739:1:exon
so has part: feature:18320463-18320618:1:exon
so has part: feature:18322135-18322933:1:exon
so has part: feature:18328165-18328309:1:exon
so has part: feature:18330212-18330287:1:exon
so has part: feature:18331358-18335255:1:exon
so has part: feature:18336286-18336403:1:exon
so has part: feature:18339911-18340012:1:exon
so has part: feature:18340960-18341230:1:exon
so has part: feature:18344171-18344305:1:exon
so has part: feature:18352673-18352854:1:exon

XP_020932749.1
type: Protein
SIO_000068: ncbiprotein

position:18078158:1
position: 18078158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18352854:1
position: 18352854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18078158-18078633:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18238900-18239404:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18249647-18249789:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18252743-18252875:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18258358-18258513:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18291481-18291592:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18299107-18299252:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18303616-18303735:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18304800-18304914:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18308771-18308844:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18308978-18309203:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18310136-18310253:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18311899-18312031:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18317945-18318026:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18319705-18319739:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18320463-18320618:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:18322135-18322933:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:18328165-18328309:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:18330212-18330287:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:18331358-18335255:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:18336286-18336403:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:18339911-18340012:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:18340960-18341230:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:18344171-18344305:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:18352673-18352854:1:exon

LOC100627979
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC100627979
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(18098351..18100330)
location: region:18098351-18100330:-1
so has part: feature:18098351-18100330:-1:exon

100627979
type: Gene
SIO_000068: ncbigene

position:18098351:-1
position: 18098351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18100330:-1
position: 18100330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18098351-18100330:-1:exon

LOC100627979
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC100627979
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC100627979
subclass of: SO_0000673
so part of: LOC100627979
location: complement(18098351..18100330)
location: region:18098351-18100330:-1
so has part: feature:18098351-18100330:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18098351-18100330:-1:exon

LOC110257335
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257335
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(18367264..18416496)
location: region:18367264-18416496:-1
so has part: feature:18367264-18416496:-1:exon
subclass of: SO_0000010

110257335
type: Gene
SIO_000068: ncbigene

position:18367264:-1
position: 18367264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18416496:-1
position: 18416496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18367264-18416496:-1:exon

LOC110257335
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: LOC110257335
product: Golgi phosphoprotein 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 71 ESTs, 250 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 182 samples with support for all annotated introns
transcript id: XM_021077099.1
SIO_010081: LOC110257335
subclass of: SO_0000673
so part of: LOC110257335
location: complement(join(18367264..18369183,18379579..18379693,18387166..18387297,18415705..18416496))
location: region:18367264-18416496:-1
so has part: feature:18415705-18416496:-1:exon
so has part: feature:18387166-18387297:-1:exon
so has part: feature:18379579-18379693:-1:exon
so has part: feature:18367264-18369183:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18415705-18416496:-1:exon

position:18415705:-1
position: 18415705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18387166-18387297:-1:exon

position:18387166:-1
position: 18387166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18387297:-1
position: 18387297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18379579-18379693:-1:exon

position:18379579:-1
position: 18379579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18379693:-1
position: 18379693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18367264-18369183:-1:exon

position:18369183:-1
position: 18369183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC110257335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: LOC110257335
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: Golgi phosphoprotein 3
translation: MTSLTQRSSGLVQRRTEASRNAADKERAAGGGGGNGEDDAQSRRDEQDDDDKGDSKETRLTLMEEVLLLGLKDREGYTSFWNDCISSGLRGCMLIELALRGRLQLEACGMRRKSLLTRKVICKSDAPTGDVLLDEALKHVKETQPPETVQNWIELLSGETWNPLKLHYQLRNVRERLAKNLVEKGVLTTEKQNFLLFDMTTHPLTNNNIKQRLIKKVQEAVLDKWVNDPHRMDKRLLALIYLAHASDVLENAFAPLLDEQYDLATKRVRQLLDLDPEVECLKASTNEVLWAVVAAFTK
SIO_010081: LOC110257335
subclass of: SO_0000673
so part of: LOC110257335
location: complement(join(18368759..18369183,18379579..18379693,18387166..18387297,18415705..18415929))
location: region:18368759-18415929:-1
so has part: feature:18415705-18415929:-1:exon
so has part: feature:18387166-18387297:-1:exon
so has part: feature:18379579-18379693:-1:exon
so has part: feature:18368759-18369183:-1:exon

XP_020932758.1
type: Protein
SIO_000068: ncbiprotein

position:18368759:-1
position: 18368759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18415929:-1
position: 18415929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18415705-18415929:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18387166-18387297:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18379579-18379693:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18368759-18369183:-1:exon

MTMR12
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: MTMR12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(18461120..18537893)
location: region:18461120-18537893:-1
so has part: feature:18461120-18537893:-1:exon
subclass of: SO_0000010

102167243
type: Gene
SIO_000068: ncbigene

position:18461120:-1
position: 18461120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18537893:-1
position: 18537893
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18461120-18537893:-1:exon

MTMR12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: MTMR12
product: myotubularin related protein 12
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 ESTs, 32 long SRA reads, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 170 samples with support for all annotated introns
transcript id: XM_021077144.1
SIO_010081: MTMR12
subclass of: SO_0000673
so part of: MTMR12
location: complement(join(18461120..18464019,18466978..18467139,18468277..18468444,18469834..18470006,18472849..18472919,18474306..18474384,18476868..18476992,18477933..18478039,18485399..18485474,18492903..18493032,18501572..18501664,18503252..18503382,18504512..18504584,18506323..18506465,18508971..18509031,18537677..18537893))
location: region:18461120-18537893:-1
so has part: feature:18537677-18537893:-1:exon
so has part: feature:18508971-18509031:-1:exon
so has part: feature:18506323-18506465:-1:exon
so has part: feature:18504512-18504584:-1:exon
so has part: feature:18503252-18503382:-1:exon
so has part: feature:18501572-18501664:-1:exon
so has part: feature:18492903-18493032:-1:exon
so has part: feature:18485399-18485474:-1:exon
so has part: feature:18477933-18478039:-1:exon
so has part: feature:18476868-18476992:-1:exon
so has part: feature:18474306-18474384:-1:exon
so has part: feature:18472849-18472919:-1:exon
so has part: feature:18469834-18470006:-1:exon
so has part: feature:18468277-18468444:-1:exon
so has part: feature:18466978-18467139:-1:exon
so has part: feature:18461120-18464019:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18537677-18537893:-1:exon

position:18537677:-1
position: 18537677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18508971-18509031:-1:exon

position:18508971:-1
position: 18508971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18509031:-1
position: 18509031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18506323-18506465:-1:exon

position:18506323:-1
position: 18506323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18506465:-1
position: 18506465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18504512-18504584:-1:exon

position:18504512:-1
position: 18504512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18504584:-1
position: 18504584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:18503252-18503382:-1:exon

position:18503252:-1
position: 18503252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18503382:-1
position: 18503382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:18501572-18501664:-1:exon

position:18501572:-1
position: 18501572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18501664:-1
position: 18501664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:18492903-18493032:-1:exon

position:18492903:-1
position: 18492903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18493032:-1
position: 18493032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:18485399-18485474:-1:exon

position:18485399:-1
position: 18485399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18485474:-1
position: 18485474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:18477933-18478039:-1:exon

position:18477933:-1
position: 18477933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18478039:-1
position: 18478039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:18476868-18476992:-1:exon

position:18476868:-1
position: 18476868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18476992:-1
position: 18476992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:18474306-18474384:-1:exon

position:18474306:-1
position: 18474306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18474384:-1
position: 18474384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:18472849-18472919:-1:exon

position:18472849:-1
position: 18472849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18472919:-1
position: 18472919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:18469834-18470006:-1:exon

position:18469834:-1
position: 18469834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18470006:-1
position: 18470006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:18468277-18468444:-1:exon

position:18468277:-1
position: 18468277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18468444:-1
position: 18468444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:18466978-18467139:-1:exon

position:18466978:-1
position: 18466978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18467139:-1
position: 18467139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:18461120-18464019:-1:exon

position:18464019:-1
position: 18464019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MTMR12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: MTMR12
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: myotubularin-related protein 12
translation: MGGAPAASAGGRCERPPLLPRVAASQGGGMLGKGVVGGGGGTKAPKPSFVSYVRPEEIHTNEKEVTEKEVTLHLLPGEQLLCEASTVLKCVQEDSCQRGIYGRLVCTDFKISFLGDDESALDNDETQFKNKVVGENDITLHCVDQIYGVFDEKKKTLFGQLKKYPETLIIHCKDLRVFHFCLRYTKEEEVKRIVSGIIIIPRLQNYLNDCSCFPMQLQHRTIQLPTARTML
SIO_010081: MTMR12
subclass of: SO_0000673
so part of: MTMR12
location: complement(join(18463450..18464019,18466978..18467139,18468277..18468444,18469834..18470006,18472849..18472919,18474306..18474384,18476868..18476992,18477933..18478039,18485399..18485474,18492903..18493032,18501572..18501664,18503252..18503382,18504512..18504584,18506323..18506465,18508971..18509031,18537677..18537844))
location: region:18463450-18537844:-1
so has part: feature:18537677-18537844:-1:exon
so has part: feature:18508971-18509031:-1:exon
so has part: feature:18506323-18506465:-1:exon
so has part: feature:18504512-18504584:-1:exon
so has part: feature:18503252-18503382:-1:exon
so has part: feature:18501572-18501664:-1:exon
so has part: feature:18492903-18493032:-1:exon
so has part: feature:18485399-18485474:-1:exon
so has part: feature:18477933-18478039:-1:exon
so has part: feature:18476868-18476992:-1:exon
so has part: feature:18474306-18474384:-1:exon
so has part: feature:18472849-18472919:-1:exon
so has part: feature:18469834-18470006:-1:exon
so has part: feature:18468277-18468444:-1:exon
so has part: feature:18466978-18467139:-1:exon
so has part: feature:18463450-18464019:-1:exon

XP_020932803.1
type: Protein
SIO_000068: ncbiprotein

position:18463450:-1
position: 18463450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18537844:-1
position: 18537844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18537677-18537844:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18508971-18509031:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18506323-18506465:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18504512-18504584:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18503252-18503382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18501572-18501664:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18492903-18493032:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18485399-18485474:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18477933-18478039:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18476868-18476992:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18474306-18474384:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18472849-18472919:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18469834-18470006:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18468277-18468444:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18466978-18467139:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18463450-18464019:-1:exon

LOC110257313
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257313
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 18555706..18559293
location: region:18555706-18559293:1
so has part: feature:18555706-18559293:1:exon

110257313
type: Gene
SIO_000068: ncbigene

position:18555706:1
position: 18555706
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18559293:1
position: 18559293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18555706-18559293:1:exon

LOC110257313
type: Exon
subclass of: SO_0000147
RO_0002162: 9823
gene: LOC110257313
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC110257313
subclass of: SO_0000673
so part of: LOC110257313
location: 18555706..18559293
location: region:18555706-18559293:1
so has part: feature:18555706-18559293:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18555706-18559293:1:exon

ZFR
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: ZFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(18561909..18656341)
location: region:18561909-18656341:-1
so has part: feature:18561909-18656341:-1:exon
subclass of: SO_0000010

100624470
type: Gene
SIO_000068: ncbigene

position:18561909:-1
position: 18561909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18656341:-1
position: 18656341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18561909-18656341:-1:exon

ZFR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ZFR
product: zinc finger RNA binding protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 ESTs, 289 long SRA reads, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 181 samples with support for all annotated introns
transcript id: XM_021076978.1
SIO_010081: ZFR
subclass of: SO_0000673
so part of: ZFR
location: complement(join(18561909..18563426,18573289..18573386,18573505..18573616,18590468..18590563,18591422..18591519,18596265..18596406,18598210..18598360,18600045..18600250,18601794..18601956,18605661..18605806,18606858..18606977,18611286..18611479,18613864..18614155,18615242..18615433,18618380..18618627,18628154..18628372,18631342..18631486,18633152..18633434,18655795..18655894,18656188..18656341))
location: region:18561909-18656341:-1
so has part: feature:18656188-18656341:-1:exon
so has part: feature:18655795-18655894:-1:exon
so has part: feature:18633152-18633434:-1:exon
so has part: feature:18631342-18631486:-1:exon
so has part: feature:18628154-18628372:-1:exon
so has part: feature:18618380-18618627:-1:exon
so has part: feature:18615242-18615433:-1:exon
so has part: feature:18613864-18614155:-1:exon
so has part: feature:18611286-18611479:-1:exon
so has part: feature:18606858-18606977:-1:exon
so has part: feature:18605661-18605806:-1:exon
so has part: feature:18601794-18601956:-1:exon
so has part: feature:18600045-18600250:-1:exon
so has part: feature:18598210-18598360:-1:exon
so has part: feature:18596265-18596406:-1:exon
so has part: feature:18591422-18591519:-1:exon
so has part: feature:18590468-18590563:-1:exon
so has part: feature:18573505-18573616:-1:exon
so has part: feature:18573289-18573386:-1:exon
so has part: feature:18561909-18563426:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18656188-18656341:-1:exon

position:18656188:-1
position: 18656188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18655795-18655894:-1:exon

position:18655795:-1
position: 18655795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18655894:-1
position: 18655894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18633152-18633434:-1:exon

position:18633152:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18633434:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 4
SIO_000628: feature:18631342-18631486:-1:exon

position:18631342:-1
position: 18631342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18631486:-1
position: 18631486
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 5
SIO_000628: feature:18628154-18628372:-1:exon

position:18628154:-1
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reference: sequence
type: ReverseStrandPosition
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position:18628372:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 6
SIO_000628: feature:18618380-18618627:-1:exon

position:18618380:-1
position: 18618380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18618627:-1
position: 18618627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:18615242-18615433:-1:exon

position:18615242:-1
position: 18615242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18615433:-1
position: 18615433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:18613864-18614155:-1:exon

position:18613864:-1
position: 18613864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18614155:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:18611286-18611479:-1:exon

position:18611286:-1
position: 18611286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18611479:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 10
SIO_000628: feature:18606858-18606977:-1:exon

position:18606858:-1
position: 18606858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18606977:-1
position: 18606977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:18605661-18605806:-1:exon

position:18605661:-1
position: 18605661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18605806:-1
position: 18605806
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 12
SIO_000628: feature:18601794-18601956:-1:exon

position:18601794:-1
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reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18601956:-1
position: 18601956
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 13
SIO_000628: feature:18600045-18600250:-1:exon

position:18600045:-1
position: 18600045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18600250:-1
position: 18600250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:18598210-18598360:-1:exon

position:18598210:-1
position: 18598210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18598360:-1
position: 18598360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:18596265-18596406:-1:exon

position:18596265:-1
position: 18596265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18596406:-1
position: 18596406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:18591422-18591519:-1:exon

position:18591422:-1
position: 18591422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18591519:-1
position: 18591519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:18590468-18590563:-1:exon

position:18590468:-1
position: 18590468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18590563:-1
position: 18590563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:18573505-18573616:-1:exon

position:18573505:-1
position: 18573505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18573616:-1
position: 18573616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:18573289-18573386:-1:exon

position:18573289:-1
position: 18573289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18573386:-1
position: 18573386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:18561909-18563426:-1:exon

position:18563426:-1
position: 18563426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZFR
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9823
gene: ZFR
product: zinc finger RNA binding protein, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 ESTs, 66 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 158 samples with support for all annotated introns
transcript id: XR_002339765.1
SIO_010081: ZFR
so part of: ZFR
location: complement(join(18561909..18563426,18573289..18573386,18573505..18573616,18590468..18590563,18596265..18596406,18598210..18598360,18600045..18600250,18601794..18601956,18605661..18605806,18606858..18606977,18611286..18611479,18613864..18614155,18615242..18615433,18618380..18618627,18628154..18628372,18631342..18631486,18633152..18633434,18655795..18655894,18656188..18656340))
location: region:18561909-18656340:-1
so has part: feature:18656188-18656340:-1:exon
so has part: feature:18655795-18655894:-1:exon
so has part: feature:18633152-18633434:-1:exon
so has part: feature:18631342-18631486:-1:exon
so has part: feature:18628154-18628372:-1:exon
so has part: feature:18618380-18618627:-1:exon
so has part: feature:18615242-18615433:-1:exon
so has part: feature:18613864-18614155:-1:exon
so has part: feature:18611286-18611479:-1:exon
so has part: feature:18606858-18606977:-1:exon
so has part: feature:18605661-18605806:-1:exon
so has part: feature:18601794-18601956:-1:exon
so has part: feature:18600045-18600250:-1:exon
so has part: feature:18598210-18598360:-1:exon
so has part: feature:18596265-18596406:-1:exon
so has part: feature:18590468-18590563:-1:exon
so has part: feature:18573505-18573616:-1:exon
so has part: feature:18573289-18573386:-1:exon
so has part: feature:18561909-18563426:-1:exon

position:18656340:-1
position: 18656340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18656188-18656340:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18655795-18655894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18633152-18633434:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18631342-18631486:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18628154-18628372:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18618380-18618627:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18615242-18615433:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18613864-18614155:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18611286-18611479:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18606858-18606977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18605661-18605806:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18601794-18601956:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18600045-18600250:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18598210-18598360:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18596265-18596406:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18590468-18590563:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:18573505-18573616:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:18573289-18573386:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:18561909-18563426:-1:exon

ZFR
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9823
gene: ZFR
product: zinc finger RNA binding protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 ESTs, 40 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 157 samples with support for all annotated introns
transcript id: XR_002339764.1
SIO_010081: ZFR
so part of: ZFR
location: complement(join(18561909..18563426,18573289..18573386,18573505..18573616,18590468..18590563,18596265..18596406,18598210..18598360,18600045..18600250,18601794..18601956,18605661..18605806,18606858..18606977,18611286..18611479,18613864..18614155,18615242..18615433,18618380..18618627,18628154..18628372,18631342..18631486,18633152..18633434,18634923..18634946,18655795..18655894,18656188..18656340))
location: region:18561909-18656340:-1
so has part: feature:18656188-18656340:-1:exon
so has part: feature:18655795-18655894:-1:exon
so has part: feature:18634923-18634946:-1:exon
so has part: feature:18633152-18633434:-1:exon
so has part: feature:18631342-18631486:-1:exon
so has part: feature:18628154-18628372:-1:exon
so has part: feature:18618380-18618627:-1:exon
so has part: feature:18615242-18615433:-1:exon
so has part: feature:18613864-18614155:-1:exon
so has part: feature:18611286-18611479:-1:exon
so has part: feature:18606858-18606977:-1:exon
so has part: feature:18605661-18605806:-1:exon
so has part: feature:18601794-18601956:-1:exon
so has part: feature:18600045-18600250:-1:exon
so has part: feature:18598210-18598360:-1:exon
so has part: feature:18596265-18596406:-1:exon
so has part: feature:18590468-18590563:-1:exon
so has part: feature:18573505-18573616:-1:exon
so has part: feature:18573289-18573386:-1:exon
so has part: feature:18561909-18563426:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18656188-18656340:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18655795-18655894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18634923-18634946:-1:exon

position:18634923:-1
position: 18634923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18634946:-1
position: 18634946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18633152-18633434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18631342-18631486:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18628154-18628372:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18618380-18618627:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18615242-18615433:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18613864-18614155:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18611286-18611479:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18606858-18606977:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18605661-18605806:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18601794-18601956:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18600045-18600250:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18598210-18598360:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18596265-18596406:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:18590468-18590563:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:18573505-18573616:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:18573289-18573386:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:18561909-18563426:-1:exon

ZFR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: ZFR
product: zinc finger RNA binding protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 ESTs, 154 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 180 samples with support for all annotated introns
transcript id: XM_021076977.1
SIO_010081: ZFR
subclass of: SO_0000673
so part of: ZFR
location: complement(join(18561909..18563426,18573289..18573386,18573505..18573616,18590468..18590563,18591422..18591519,18596265..18596406,18598210..18598360,18600045..18600250,18601794..18601956,18605661..18605806,18606858..18606977,18611286..18611479,18613864..18614155,18615242..18615433,18618380..18618627,18628154..18628372,18631342..18631486,18633152..18633434,18634923..18634946,18655795..18655894,18656188..18656340))
location: region:18561909-18656340:-1
so has part: feature:18656188-18656340:-1:exon
so has part: feature:18655795-18655894:-1:exon
so has part: feature:18634923-18634946:-1:exon
so has part: feature:18633152-18633434:-1:exon
so has part: feature:18631342-18631486:-1:exon
so has part: feature:18628154-18628372:-1:exon
so has part: feature:18618380-18618627:-1:exon
so has part: feature:18615242-18615433:-1:exon
so has part: feature:18613864-18614155:-1:exon
so has part: feature:18611286-18611479:-1:exon
so has part: feature:18606858-18606977:-1:exon
so has part: feature:18605661-18605806:-1:exon
so has part: feature:18601794-18601956:-1:exon
so has part: feature:18600045-18600250:-1:exon
so has part: feature:18598210-18598360:-1:exon
so has part: feature:18596265-18596406:-1:exon
so has part: feature:18591422-18591519:-1:exon
so has part: feature:18590468-18590563:-1:exon
so has part: feature:18573505-18573616:-1:exon
so has part: feature:18573289-18573386:-1:exon
so has part: feature:18561909-18563426:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18656188-18656340:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18655795-18655894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18634923-18634946:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18633152-18633434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18631342-18631486:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18628154-18628372:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18618380-18618627:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18615242-18615433:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18613864-18614155:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18611286-18611479:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18606858-18606977:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18605661-18605806:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18601794-18601956:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18600045-18600250:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18598210-18598360:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18596265-18596406:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:18591422-18591519:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:18590468-18590563:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:18573505-18573616:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:18573289-18573386:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:18561909-18563426:-1:exon

ZFR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ZFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger RNA-binding protein isoform X2
translation: MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQTRQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKAPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAASNCTVNTSSIATSSVKGLTTTGNSSLNSTANTKISAVPTNMAAKKTSTPKINFVGGNKLQSTGNKTEDLKGTECVKSTPVTSVQIQEVKPDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMSQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF
SIO_010081: ZFR
subclass of: SO_0000673
so part of: ZFR
location: complement(join(18563247..18563426,18573289..18573386,18573505..18573616,18590468..18590563,18591422..18591519,18596265..18596406,18598210..18598360,18600045..18600250,18601794..18601956,18605661..18605806,18606858..18606977,18611286..18611479,18613864..18614155,18615242..18615433,18618380..18618627,18628154..18628372,18631342..18631486,18633152..18633434,18655795..18655894,18656188..18656224))
location: region:18563247-18656224:-1
so has part: feature:18656188-18656224:-1:exon
so has part: feature:18655795-18655894:-1:exon
so has part: feature:18633152-18633434:-1:exon
so has part: feature:18631342-18631486:-1:exon
so has part: feature:18628154-18628372:-1:exon
so has part: feature:18618380-18618627:-1:exon
so has part: feature:18615242-18615433:-1:exon
so has part: feature:18613864-18614155:-1:exon
so has part: feature:18611286-18611479:-1:exon
so has part: feature:18606858-18606977:-1:exon
so has part: feature:18605661-18605806:-1:exon
so has part: feature:18601794-18601956:-1:exon
so has part: feature:18600045-18600250:-1:exon
so has part: feature:18598210-18598360:-1:exon
so has part: feature:18596265-18596406:-1:exon
so has part: feature:18591422-18591519:-1:exon
so has part: feature:18590468-18590563:-1:exon
so has part: feature:18573505-18573616:-1:exon
so has part: feature:18573289-18573386:-1:exon
so has part: feature:18563247-18563426:-1:exon

XP_020932637.1
type: Protein
SIO_000068: ncbiprotein

position:18563247:-1
position: 18563247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18656224:-1
position: 18656224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18656188-18656224:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18655795-18655894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18633152-18633434:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18631342-18631486:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18628154-18628372:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18618380-18618627:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18615242-18615433:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18613864-18614155:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18611286-18611479:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18606858-18606977:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18605661-18605806:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18601794-18601956:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18600045-18600250:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18598210-18598360:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18596265-18596406:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18591422-18591519:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:18590468-18590563:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:18573505-18573616:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:18573289-18573386:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:18563247-18563426:-1:exon

ZFR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: ZFR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger RNA-binding protein isoform X1
translation: MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSSVLWSSMDQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQTRQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKAPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAASNCTVNTSSIATSSVKGLTTTGNSSLNSTANTKISAVPTNMAAKKTSTPKINFVGGNKLQSTGNKTEDLKGTECVKSTPVTSVQIQEVKPDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMSQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF
SIO_010081: ZFR
subclass of: SO_0000673
so part of: ZFR
location: complement(join(18563247..18563426,18573289..18573386,18573505..18573616,18590468..18590563,18591422..18591519,18596265..18596406,18598210..18598360,18600045..18600250,18601794..18601956,18605661..18605806,18606858..18606977,18611286..18611479,18613864..18614155,18615242..18615433,18618380..18618627,18628154..18628372,18631342..18631486,18633152..18633434,18634923..18634946,18655795..18655894,18656188..18656224))
location: region:18563247-18656224:-1
so has part: feature:18656188-18656224:-1:exon
so has part: feature:18655795-18655894:-1:exon
so has part: feature:18634923-18634946:-1:exon
so has part: feature:18633152-18633434:-1:exon
so has part: feature:18631342-18631486:-1:exon
so has part: feature:18628154-18628372:-1:exon
so has part: feature:18618380-18618627:-1:exon
so has part: feature:18615242-18615433:-1:exon
so has part: feature:18613864-18614155:-1:exon
so has part: feature:18611286-18611479:-1:exon
so has part: feature:18606858-18606977:-1:exon
so has part: feature:18605661-18605806:-1:exon
so has part: feature:18601794-18601956:-1:exon
so has part: feature:18600045-18600250:-1:exon
so has part: feature:18598210-18598360:-1:exon
so has part: feature:18596265-18596406:-1:exon
so has part: feature:18591422-18591519:-1:exon
so has part: feature:18590468-18590563:-1:exon
so has part: feature:18573505-18573616:-1:exon
so has part: feature:18573289-18573386:-1:exon
so has part: feature:18563247-18563426:-1:exon

XP_020932636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18656188-18656224:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18655795-18655894:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18634923-18634946:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18633152-18633434:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18631342-18631486:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18628154-18628372:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18618380-18618627:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18615242-18615433:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:18613864-18614155:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:18611286-18611479:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:18606858-18606977:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:18605661-18605806:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:18601794-18601956:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:18600045-18600250:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:18598210-18598360:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:18596265-18596406:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:18591422-18591519:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:18590468-18590563:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:18573505-18573616:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:18573289-18573386:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:18563247-18563426:-1:exon

LOC110257314
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: LOC110257314
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(18645793..18655733)
location: region:18645793-18655733:-1
so has part: feature:18645793-18655733:-1:exon
subclass of: SO_0000011

110257314
type: Gene
SIO_000068: ncbigene

position:18645793:-1
position: 18645793
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18655733:-1
position: 18655733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18645793-18655733:-1:exon

LOC110257314
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9823
nc RNA class: lncRNA
gene: LOC110257314
product: uncharacterized LOC110257314
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 24 long SRA reads, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XR_002339766.1
SIO_010081: LOC110257314
subclass of: SO_0000673
so part of: LOC110257314
location: complement(join(18645793..18648568,18649656..18655733))
location: region:18645793-18655733:-1
so has part: feature:18649656-18655733:-1:exon
so has part: feature:18645793-18648568:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18649656-18655733:-1:exon

position:18649656:-1
position: 18649656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18645793-18648568:-1:exon

position:18648568:-1
position: 18648568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SUB1
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: SUB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 18758886..18779421
location: region:18758886-18779421:1
so has part: feature:18758886-18779421:1:exon
subclass of: SO_0000010

110257216
type: Gene
SIO_000068: ncbigene

position:18758886:1
position: 18758886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18779421:1
position: 18779421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18758886-18779421:1:exon

SUB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: SUB1
product: SUB1 homolog, transcriptional regulator
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 157 ESTs, 770 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 182 samples with support for all annotated introns
transcript id: XM_021076608.1
SIO_010081: SUB1
subclass of: SO_0000673
so part of: SUB1
location: join(18758886..18759014,18761755..18761827,18763652..18763774,18773053..18773161,18776409..18779421)
location: region:18758886-18779421:1
so has part: feature:18758886-18759014:1:exon
so has part: feature:18761755-18761827:1:exon
so has part: feature:18763652-18763774:1:exon
so has part: feature:18773053-18773161:1:exon
so has part: feature:18776409-18779421:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18758886-18759014:1:exon

position:18759014:1
position: 18759014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18761755-18761827:1:exon

position:18761755:1
position: 18761755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18761827:1
position: 18761827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18763652-18763774:1:exon

position:18763652:1
position: 18763652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18763774:1
position: 18763774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18773053-18773161:1:exon

position:18773053:1
position: 18773053
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18773161:1
position: 18773161
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:18776409-18779421:1:exon

position:18776409:1
position: 18776409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SUB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: SUB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: activated RNA polymerase II transcriptional coactivator p15
translation: MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL
SIO_010081: SUB1
subclass of: SO_0000673
so part of: SUB1
location: join(18761756..18761827,18763652..18763774,18773053..18773161,18776409..18776488)
location: region:18761756-18776488:1
so has part: feature:18761756-18761827:1:exon
so has part: feature:18763652-18763774:1:exon
so has part: feature:18773053-18773161:1:exon
so has part: feature:18776409-18776488:1:exon

XP_020932267.1
type: Protein
SIO_000068: ncbiprotein

position:18761756:1
position: 18761756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18776488:1
position: 18776488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18761756-18761827:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18763652-18763774:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18773053-18773161:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18776409-18776488:1:exon

NPR3
type: Gene
subclass of: SO_0000704
RO_0002162: 9823
gene: NPR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 18841540..18929813
location: region:18841540-18929813:1
so has part: feature:18841540-18929813:1:exon
subclass of: SO_0000010

100626363
type: Gene
SIO_000068: ncbigene

position:18841540:1
position: 18841540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18929813:1
position: 18929813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18841540-18929813:1:exon

NPR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: NPR3
product: natriuretic peptide receptor 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 50 ESTs, 46 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 135 samples with support for all annotated introns
transcript id: XM_021077059.1
SIO_010081: NPR3
subclass of: SO_0000673
so part of: NPR3
location: join(18841540..18843249,18853042..18853164,18872992..18873158,18912400..18912535,18918079..18918173,18921247..18921382,18923142..18923229,18924221..18929813)
location: region:18841540-18929813:1
so has part: feature:18841540-18843249:1:exon
so has part: feature:18853042-18853164:1:exon
so has part: feature:18872992-18873158:1:exon
so has part: feature:18912400-18912535:1:exon
so has part: feature:18918079-18918173:1:exon
so has part: feature:18921247-18921382:1:exon
so has part: feature:18923142-18923229:1:exon
so has part: feature:18924221-18929813:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18841540-18843249:1:exon

position:18843249:1
position: 18843249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18853042-18853164:1:exon

position:18853042:1
position: 18853042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18853164:1
position: 18853164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:18872992-18873158:1:exon

position:18872992:1
position: 18872992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18873158:1
position: 18873158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:18912400-18912535:1:exon

position:18912400:1
position: 18912400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18912535:1
position: 18912535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:18918079-18918173:1:exon

position:18918079:1
position: 18918079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18918173:1
position: 18918173
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:18921247-18921382:1:exon

position:18921247:1
position: 18921247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18921382:1
position: 18921382
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:18923142-18923229:1:exon

position:18923142:1
position: 18923142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18923229:1
position: 18923229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:18924221-18929813:1:exon

position:18924221:1
position: 18924221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NPR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: NPR3
product: natriuretic peptide receptor 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 ESTs, 46 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 135 samples with support for all annotated introns
transcript id: XM_021077060.1
SIO_010081: NPR3
subclass of: SO_0000673
so part of: NPR3
location: join(18841540..18843249,18853042..18853164,18872992..18873158,18912400..18912535,18918079..18918173,18921247..18921382,18923145..18923229,18924221..18929813)
location: region:18841540-18929813:1
so has part: feature:18841540-18843249:1:exon
so has part: feature:18853042-18853164:1:exon
so has part: feature:18872992-18873158:1:exon
so has part: feature:18912400-18912535:1:exon
so has part: feature:18918079-18918173:1:exon
so has part: feature:18921247-18921382:1:exon
so has part: feature:18923145-18923229:1:exon
so has part: feature:18924221-18929813:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:18841540-18843249:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18853042-18853164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18872992-18873158:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18912400-18912535:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18918079-18918173:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18921247-18921382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18923145-18923229:1:exon

position:18923145:1
position: 18923145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:18924221-18929813:1:exon

NPR3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9823
gene: NPR3
product: natriuretic peptide receptor 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
transcript id: XM_021077061.1
SIO_010081: NPR3
subclass of: SO_0000673
so part of: NPR3
location: join(18841540..18843249,18853042..18853164,18872992..18873158,18912400..18912535,18918079..18918173,18918334..18918492)
location: region:18841540-18918492:1
so has part: feature:18841540-18843249:1:exon
so has part: feature:18853042-18853164:1:exon
so has part: feature:18872992-18873158:1:exon
so has part: feature:18912400-18912535:1:exon
so has part: feature:18918079-18918173:1:exon
so has part: feature:18918334-18918492:1:exon

position:18918492:1
position: 18918492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18841540-18843249:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18853042-18853164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18872992-18873158:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18912400-18912535:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18918079-18918173:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18918334-18918492:1:exon

position:18918334:1
position: 18918334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

NPR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: NPR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atrial natriuretic peptide receptor 3 isoform X1
translation: MPSLLVLTFSACVLLDWALLVGCTGGGVGGGPGGGRREREALPPQKIEVLVLLPQDDSYLFSLARVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMMLALFRHHQWSRAVLVYSDDKLERNCFFTLEGVHEVFQEEGLHTSVYNFDETKGLDLDDIVRYIQANERVVIMCASSDTIRSIMLAAHRHGMTSGDYAFFNIELFNSSSYGDGSWRRGDKHDFEAKQAYSSLQTITLLRTVKPEFEKFSMEVKNSVEKQGLSEEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGKVSIDANGDRYGDFSVIAMTDTEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDETRIVEHTNSSPCKASGGLEESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRNQQEESNIGKHRELREDSIRSHFSVA
SIO_010081: NPR3
subclass of: SO_0000673
so part of: NPR3
location: join(18842499..18843249,18853042..18853164,18872992..18873158,18912400..18912535,18918079..18918173,18921247..18921382,18923142..18923229,18924221..18924332)
location: region:18842499-18924332:1
so has part: feature:18842499-18843249:1:exon
so has part: feature:18853042-18853164:1:exon
so has part: feature:18872992-18873158:1:exon
so has part: feature:18912400-18912535:1:exon
so has part: feature:18918079-18918173:1:exon
so has part: feature:18921247-18921382:1:exon
so has part: feature:18923142-18923229:1:exon
so has part: feature:18924221-18924332:1:exon

XP_020932718.1
type: Protein
SIO_000068: ncbiprotein

position:18842499:1
position: 18842499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18924332:1
position: 18924332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18842499-18843249:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18853042-18853164:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:18872992-18873158:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:18912400-18912535:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18918079-18918173:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:18921247-18921382:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:18923142-18923229:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:18924221-18924332:1:exon

NPR3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9823
gene: NPR3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: atrial natriuretic peptide receptor 3 isoform X2
translation: MPSLLVLTFSACVLLDWALLVGCTGGGVGGGPGGGRREREALPPQKIEVLVLLPQDDSYLFSLARVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDTEYSHLTRVAPAYAKMGEMMLALFRHHQWSRAVLVYSDDKLERNCFFTLEGVHEVFQEEGLHTSVYNFDETKGLDLDDIVRYIQANERVVIMCASSDTIRSIMLAAHRHGMTSGDYAFFNIELFNSSSYGDGSWRRGDKHDFEAKQAYSSLQTITLLRTVKPEFEKFSMEVKNSVEKQGLSEEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGKVSIDANGDRYGDFSVIAMTDTEAGTQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDETRIVEHTNSSPCKACGLEESAVTGIVVGALLGAGLLMAFYFFRKKYRITIERRNQQEESNIGKHRELREDSIRSHFSVA
SIO_010081: NPR3
subclass of: SO_0000673
so part of: NPR3
location: join(18842499..18843249,18853042..18853164,18872992..18873158,18912400..18912535,18918079..18918173,18921247..18921382,18923145..18923229,18924221..18924332)
location: region:18842499-18924332:1
so has part: feature:18842499-18843249:1:exon
so has part: feature:18853042-18853164:1:exon
so has part: feature:18872992-18873158:1:exon
so has part: feature:18912400-18912535:1:exon
so has part: feature:18918079-18918173:1:exon
so has part: feature:18921247-18921382:1:exon
so has part: feature:18923145-18923229:1:exon
so has part: feature:18924221-18924332:1:exon

XP_020932719.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18842499-18843249:1:exon