Chloracidobacterium thermophilum B chromosome 2, complete sequence.
Bacteria; Acidobacteriota; Blastocatellia; Chloracidobacterium.
Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria
Submitted (07-FEB-2011) Biochemistry and Molecular Biology, The Pennsylvania State University, S-235 Frear Building, University Park, PA 16802, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002515.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/05/2023 19:51:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,101\nCDSs (total) :: 3,047\nGenes (coding) :: 2,984\nCDSs (with protein) :: 2,984\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 17 of 63\nPseudo Genes (incomplete) :: 48 of 63\nPseudo Genes (internal stop) :: 8 of 63\nPseudo Genes (multiple problems) :: 9 of 63\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Chloracidobacterium thermophilum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF039822.1
COORDINATES: similar to AA sequence:RefSeq:WP_015145548.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013569783.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019298.2
GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012471.2
COORDINATES: protein motif:HMM:NF024764.2
COORDINATES: protein motif:HMM:TIGR01399.1
GO:0009306 - protein secretion [Evidence IEA]
type III secretion system export apparatus subunit SctV
COORDINATES: similar to AA sequence:RefSeq:WP_014099589.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014098806.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_011709507.1
dicarboxylate/amino acid:cation symporter
COORDINATES: protein motif:HMM:TIGR02499.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system stator protein SctL
COORDINATES: protein motif:HMM:NF015722.2
SUMF1/EgtB/PvdO family nonheme iron enzyme
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: protein motif:HMM:TIGR00262.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010586253.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008099208.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012356.2
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019853459.1
COORDINATES: protein motif:HMM:NF024242.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016868194.1
GO:0051007 - squalene-hopene cyclase activity [Evidence IEA]
GO:0019746 - hopanoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011143289.1
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF012699.2
COORDINATES: protein motif:HMM:NF017085.2
COORDINATES: protein motif:HMM:NF005742.0
COORDINATES: protein motif:HMM:NF014868.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012616649.1
COORDINATES: similar to AA sequence:RefSeq:WP_012616650.1
COORDINATES: similar to AA sequence:RefSeq:WP_016482150.1
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019335.2
COORDINATES: similar to AA sequence:RefSeq:WP_020249245.1
COORDINATES: similar to AA sequence:RefSeq:WP_015895847.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006683169.1
GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
BglII/BstYI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_020261381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014101092.1
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: similar to AA sequence:RefSeq:WP_012119698.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013320272.1
COORDINATES: similar to AA sequence:RefSeq:WP_011958962.1
COORDINATES: similar to AA sequence:RefSeq:WP_017715170.1
COORDINATES: similar to AA sequence:RefSeq:WP_013566835.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009456750.1
COORDINATES: similar to AA sequence:RefSeq:WP_015745086.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011687303.1
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014578364.1
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:NF014567.2
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013074810.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF001209.0
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00657.1
GO:0004072 - aspartate kinase activity [Evidence IEA]
GO:0050485 - oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor [Evidence IEA]
glycine/sarcosine/betaine reductase selenoprotein B family protein
COORDINATES: protein motif:HMM:NF016155.2
COORDINATES: similar to AA sequence:RefSeq:WP_005490748.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006799438.1
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF009140.0
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012307943.1
GO:0015995 - chlorophyll biosynthetic process [Evidence IEA]
ferredoxin:protochlorophyllide reductase (ATP-dependent) iron-sulfur ATP-binding protein
COORDINATES: protein motif:HMM:NF016328.2
Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain
COORDINATES: protein motif:HMM:TIGR02020.1
GO:0030494 - bacteriochlorophyll biosynthetic process [Evidence IEA]
2-vinyl bacteriochlorophyllide hydratase
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_017937175.1
COORDINATES: similar to AA sequence:RefSeq:WP_008157611.1
GO:0005515 - protein binding [Evidence IEA]
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: protein motif:HMM:NF040570.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012462715.1
COORDINATES: similar to AA sequence:RefSeq:WP_015328187.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: protein motif:HMM:NF036516.2
COORDINATES: similar to AA sequence:RefSeq:WP_013036900.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012464175.1
COORDINATES: similar to AA sequence:RefSeq:WP_006968913.1
COORDINATES: protein motif:HMM:NF017522.2
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: similar to AA sequence:RefSeq:WP_020719518.1
COORDINATES: similar to AA sequence:RefSeq:WP_011687948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012874508.1
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
galactose-1-phosphate uridylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012374493.1
COORDINATES: similar to AA sequence:RefSeq:WP_007416595.1
COORDINATES: similar to AA sequence:RefSeq:WP_012119175.1
type II toxin-antitoxin system PemK/MazF family toxin
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021558.2
COORDINATES: similar to AA sequence:RefSeq:WP_020736048.1
COORDINATES: similar to AA sequence:RefSeq:WP_008248231.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020086324.1
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: similar to AA sequence:RefSeq:WP_014099169.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF038262.1
HAMP domain-containing sensor histidine kinase
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: similar to AA sequence:RefSeq:WP_013842936.1
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016495467.1
COORDINATES: protein motif:HMM:TIGR00093.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012234890.1
COORDINATES: similar to AA sequence:RefSeq:WP_012283169.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178986.1
GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011417987.1
COORDINATES: similar to AA sequence:RefSeq:WP_015199290.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF037660.2
tetratricopeptide repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013375260.1
COORDINATES: similar to AA sequence:RefSeq:WP_014100879.1
COORDINATES: similar to AA sequence:RefSeq:WP_011956727.1
COORDINATES: similar to AA sequence:RefSeq:WP_018400173.1
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_012256540.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_008233962.1
magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:TIGR04113.1
type I-U CRISPR-associated protein Csx17
COORDINATES: protein motif:HMM:NF021156.2
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-U CRISPR-associated RAMP protein Csb1/Cas7u
COORDINATES: protein motif:HMM:TIGR02165.1
COORDINATES: similar to AA sequence:RefSeq:WP_011317134.1
COORDINATES: similar to AA sequence:RefSeq:WP_012267867.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012946.2
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013188.2
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013117.2
COORDINATES: similar to AA sequence:RefSeq:WP_011957906.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012258176.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: similar to AA sequence:RefSeq:WP_015235061.1
COORDINATES: similar to AA sequence:RefSeq:WP_020652184.1
COORDINATES: protein motif:HMM:NF025010.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: protein motif:HMM:NF026257.2
COORDINATES: similar to AA sequence:RefSeq:WP_011683785.1
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025173.2
Spy/CpxP family protein refolding chaperone
COORDINATES: protein motif:HMM:NF040769.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF013491.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
PEP/pyruvate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019989536.1
COORDINATES: protein motif:HMM:TIGR04474.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010636464.1
COORDINATES: similar to AA sequence:RefSeq:WP_013335366.1
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:NF012640.2
anthranilate synthase component I family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008317694.1
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO:0046417 - chorismate metabolic process [Evidence IEA]
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
COORDINATES: protein motif:HMM:TIGR02195.1
GO:0008920 - lipopolysaccharide heptosyltransferase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
lipopolysaccharide heptosyltransferase II
COORDINATES: similar to AA sequence:RefSeq:WP_002766803.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004078501.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011361475.1
COORDINATES: similar to AA sequence:RefSeq:WP_012507096.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015809511.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011688731.1
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012911.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF025078.2
COORDINATES: similar to AA sequence:RefSeq:WP_005799367.1
COORDINATES: similar to AA sequence:RefSeq:WP_014100934.1
COORDINATES: similar to AA sequence:RefSeq:WP_014100937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007786565.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0001887 - selenium compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF024881.2
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005373821.1
COORDINATES: similar to AA sequence:RefSeq:WP_009518703.1
COORDINATES: similar to AA sequence:RefSeq:WP_004357770.1
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: similar to AA sequence:RefSeq:WP_013246741.1
COORDINATES: similar to AA sequence:RefSeq:WP_009858748.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015352800.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_019944763.1
COORDINATES: similar to AA sequence:RefSeq:WP_007338605.1
COORDINATES: similar to AA sequence:RefSeq:WP_013505031.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF014864.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178237.1
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:NF003384.0
GO:0016597 - amino acid binding [Evidence IEA]; GO:0043857 - N-acetylornithine carbamoyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006098279.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF027681.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334350.1
COORDINATES: similar to AA sequence:RefSeq:WP_009281362.1
WcaF family extracellular polysaccharide biosynthesis acetyltransferase
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_017721670.1
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF003349.0
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0006783 - heme biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02229.1
cytochrome C oxidase subunit IV family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014065932.1
cytochrome c oxidase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011682284.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:TIGR02866.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: similar to AA sequence:RefSeq:WP_011682279.1
COORDINATES: similar to AA sequence:RefSeq:WP_012119988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012875534.1
COORDINATES: protein motif:HMM:NF024247.2
TAT-variant-translocated molybdopterin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004447869.1
COORDINATES: similar to AA sequence:RefSeq:WP_020709804.1
GO:0071793 - bacillithiol biosynthetic process [Evidence IEA]
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
COORDINATES: protein motif:HMM:NF013362.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
transcription antitermination factor NusB
COORDINATES: protein motif:HMM:NF015862.2
COORDINATES: protein motif:HMM:TIGR03472.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
bacteriohopanetetrol glucosamine biosynthesis glycosyltransferase HpnI
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:TIGR03473.1
hopanoid biosynthesis-associated protein HpnK
COORDINATES: similar to AA sequence:RefSeq:WP_011699925.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
hopanoid biosynthesis associated radical SAM protein HpnJ
COORDINATES: similar to AA sequence:RefSeq:WP_016481467.1
COORDINATES: similar to AA sequence:RefSeq:WP_007911497.1
COORDINATES: similar to AA sequence:RefSeq:WP_009455671.1
COORDINATES: protein motif:HMM:NF021134.2
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014101193.1
COORDINATES: similar to AA sequence:RefSeq:WP_002628563.1
COORDINATES: similar to AA sequence:RefSeq:WP_014433785.1
COORDINATES: similar to AA sequence:RefSeq:WP_012830528.1
COORDINATES: protein motif:HMM:TIGR01848.1
polyhydroxyalkanoate synthesis repressor PhaR
COORDINATES: protein motif:HMM:NF024405.2
BACON domain-containing carbohydrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011142703.1
COORDINATES: similar to AA sequence:RefSeq:WP_011432018.1
COORDINATES: similar to AA sequence:RefSeq:WP_001278583.1
COORDINATES: protein motif:HMM:TIGR02257.1
GO:0051116 - cobaltochelatase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006610646.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013817121.1
COORDINATES: protein motif:HMM:NF020530.2
COORDINATES: similar to AA sequence:RefSeq:WP_018132725.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010034938.1
GO:0008150 - biological_process [Evidence IEA]
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: similar to AA sequence:RefSeq:WP_012348358.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013501635.1
nucleotidyltransferase substrate binding protein
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013148480.1
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014434670.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012122417.1
COORDINATES: similar to AA sequence:RefSeq:WP_011522809.1
GO:0004334 - fumarylacetoacetase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF013479.2
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF028099.2
GO:0009288 - bacterial-type flagellum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014101333.1
COORDINATES: protein motif:HMM:NF027890.2
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008697869.1
COORDINATES: protein motif:HMM:NF014177.2
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF015995.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016877726.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013822929.1
COORDINATES: similar to AA sequence:RefSeq:WP_002654465.1
COORDINATES: similar to AA sequence:RefSeq:WP_002644648.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: similar to AA sequence:RefSeq:WP_014501493.1
COORDINATES: similar to AA sequence:RefSeq:WP_015068270.1
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014695681.1
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013555159.1
COORDINATES: similar to AA sequence:RefSeq:WP_014101078.1
COORDINATES: similar to AA sequence:RefSeq:WP_020741854.1
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: protein motif:HMM:TIGR02807.1
type I-MYXAN CRISPR-associated protein Cas6/Cmx6
COORDINATES: similar to AA sequence:RefSeq:WP_012599598.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015123920.1
type I-MYXAN CRISPR-associated Cas8a1/Cmx1
COORDINATES: similar to AA sequence:RefSeq:WP_015123919.1
DevR family CRISPR-associated autoregulator
COORDINATES: similar to AA sequence:RefSeq:WP_002749876.1
type I-MYXAN CRISPR-associated protein Cas5/Cmx5/DevS
COORDINATES: similar to AA sequence:RefSeq:WP_003389987.1
type I-MYXAN CRISPR-associated endonuclease Cas4/Cas1
COORDINATES: similar to AA sequence:RefSeq:WP_020877263.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019135.2
two-component regulator propeller domain-containing protein
COORDINATES: protein motif:HMM:NF019136.2
COORDINATES: protein motif:HMM:NF018884.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024869.2
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: protein motif:HMM:NF019334.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: protein motif:HMM:TIGR01730.1
COORDINATES: protein motif:HMM:TIGR00914.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF037679.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025030.2
formylglycine-generating enzyme family protein
COORDINATES: protein motif:HMM:TIGR00667.1
GO:0008914 - leucyltransferase activity [Evidence IEA]
leucyl/phenylalanyl-tRNA--protein transferase
COORDINATES: protein motif:HMM:TIGR03436.1
COORDINATES: similar to AA sequence:RefSeq:WP_018289618.1
COORDINATES: similar to AA sequence:RefSeq:WP_011686033.1
COORDINATES: protein motif:HMM:NF019632.2
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: similar to AA sequence:RefSeq:WP_009150911.1
COORDINATES: similar to AA sequence:RefSeq:WP_016482157.1
GO:0045243 - cytosolic isocitrate dehydrogenase complex (NAD+) [Evidence IEA]; GO:0005962 - mitochondrial isocitrate dehydrogenase complex (NAD+) [Evidence IEA]
GO:0004449 - isocitrate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0006102 - isocitrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: protein motif:HMM:NF013664.2
type III secretory pathway, lipoprotein EscJ
COORDINATES: protein motif:HMM:NF015679.2
COORDINATES: similar to AA sequence:RefSeq:WP_005966808.1
low molecular weight protein-tyrosine-phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_010607494.1
COORDINATES: protein motif:HMM:NF012301.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF022182.2
COORDINATES: similar to AA sequence:RefSeq:WP_002612287.1
COORDINATES: protein motif:HMM:NF014677.2
COORDINATES: similar to AA sequence:RefSeq:WP_012468147.1
COORDINATES: protein motif:HMM:TIGR00109.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012496049.1
COORDINATES: protein motif:HMM:TIGR00738.1
COORDINATES: similar to AA sequence:RefSeq:WP_010996648.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015202047.1
COORDINATES: protein motif:HMM:TIGR01981.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017953706.1
COORDINATES: similar to AA sequence:RefSeq:WP_013219709.1
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF019758.2
COORDINATES: similar to AA sequence:RefSeq:WP_012256345.1
COORDINATES: similar to AA sequence:RefSeq:WP_019507326.1
COORDINATES: similar to AA sequence:RefSeq:WP_011430170.1
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: similar to AA sequence:RefSeq:WP_011633876.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002810797.1
COORDINATES: similar to AA sequence:RefSeq:WP_005007874.1
COORDINATES: similar to AA sequence:RefSeq:WP_014101168.1
COORDINATES: similar to AA sequence:RefSeq:WP_009962269.1
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_015145856.1
COORDINATES: similar to AA sequence:RefSeq:WP_006929931.1
COORDINATES: similar to AA sequence:RefSeq:WP_019881805.1
COORDINATES: similar to AA sequence:RefSeq:WP_017218888.1
COORDINATES: similar to AA sequence:RefSeq:WP_012935666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013506008.1
SCP2 sterol-binding domain-containing protein
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012681884.1
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022750.2
COORDINATES: similar to AA sequence:RefSeq:WP_012122837.1
COORDINATES: protein motif:HMM:NF013704.2
COORDINATES: similar to AA sequence:RefSeq:WP_020663023.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: protein motif:HMM:NF019615.2
COORDINATES: similar to AA sequence:RefSeq:WP_012501124.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018917.2
COORDINATES: similar to AA sequence:RefSeq:WP_011430848.1
COORDINATES: similar to AA sequence:RefSeq:WP_011243767.1
COORDINATES: similar to AA sequence:RefSeq:WP_019915631.1
COORDINATES: similar to AA sequence:RefSeq:WP_006519863.1
COORDINATES: similar to AA sequence:RefSeq:WP_016858826.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014560353.1
COORDINATES: similar to AA sequence:RefSeq:WP_006570787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012930496.1
COORDINATES: similar to AA sequence:RefSeq:WP_015249222.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_002612852.1
COORDINATES: similar to AA sequence:RefSeq:WP_013822375.1
COORDINATES: protein motif:HMM:NF020123.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: similar to AA sequence:RefSeq:WP_015113465.1
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: similar to AA sequence:RefSeq:WP_014101035.1
COORDINATES: similar to AA sequence:RefSeq:WP_012681668.1
COORDINATES: similar to AA sequence:RefSeq:WP_017245675.1
GO:0015666 - restriction endodeoxyribonuclease activity [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]; GO:0009307 - DNA restriction-modification system [Evidence IEA]
type I restriction-modification system subunit M
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011058064.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_013908179.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015941994.1
COORDINATES: similar to AA sequence:RefSeq:WP_014629080.1
COORDINATES: protein motif:HMM:NF025124.2
COORDINATES: protein motif:HMM:NF016232.2
putative DNA binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019559500.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_018465142.1
COORDINATES: similar to AA sequence:RefSeq:WP_010895135.1
COORDINATES: similar to AA sequence:RefSeq:WP_003280337.1
COORDINATES: similar to AA sequence:RefSeq:WP_015942031.1
BglI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_015942032.1
COORDINATES: similar to AA sequence:RefSeq:WP_014101222.1
COORDINATES: similar to AA sequence:RefSeq:WP_014686188.1
COORDINATES: protein motif:HMM:NF024706.2
COORDINATES: similar to AA sequence:RefSeq:WP_011430758.1
COORDINATES: similar to AA sequence:RefSeq:WP_011429255.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115108.1
ABC transporter ATP-binding protein/permease
COORDINATES: similar to AA sequence:RefSeq:WP_015942029.1
COORDINATES: similar to AA sequence:RefSeq:WP_011523173.1
COORDINATES: similar to AA sequence:RefSeq:WP_148264119.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020718104.1
COORDINATES: similar to AA sequence:RefSeq:WP_014264770.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018443886.1
COORDINATES: protein motif:HMM:NF001810.0
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF017532.2
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011688364.1
COORDINATES: similar to AA sequence:RefSeq:WP_012119610.1
COORDINATES: protein motif:HMM:NF040267.1
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF012678.2
COORDINATES: protein motif:HMM:TIGR02551.1
type III secretion system cytoplasmic ring protein SctQ
COORDINATES: protein motif:HMM:NF016250.2
COORDINATES: similar to AA sequence:RefSeq:WP_003164548.1
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_012370733.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015942016.1
COORDINATES: similar to AA sequence:RefSeq:WP_012238498.1
iron-sulfur cluster assembly accessory protein
COORDINATES: protein motif:HMM:NF016955.2
tellurite resistance TerB family protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_015814210.1
COORDINATES: similar to AA sequence:RefSeq:WP_008360694.1
phosphomannose isomerase type II C-terminal cupin domain
COORDINATES: similar to AA sequence:RefSeq:WP_002693599.1
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010998379.1
COORDINATES: protein motif:HMM:TIGR01401.1
type III secretion system export apparatus subunit SctT
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013918.2
protein-methionine-sulfoxide reductase heme-binding subunit MsrQ
COORDINATES: protein motif:HMM:NF015956.2
COORDINATES: similar to AA sequence:RefSeq:WP_012911326.1
COORDINATES: similar to AA sequence:RefSeq:WP_014068025.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: similar to AA sequence:RefSeq:WP_011238737.1
COORDINATES: protein motif:HMM:NF012787.2
thioredoxin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015896866.1
COORDINATES: protein motif:HMM:NF024757.2
beta galactosidase jelly roll domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020722381.1
COORDINATES: similar to AA sequence:RefSeq:WP_012431698.1
COORDINATES: similar to AA sequence:RefSeq:WP_007293554.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012076215.1
COORDINATES: similar to AA sequence:RefSeq:WP_003241011.1
GO:0070403 - NAD+ binding [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF025690.2
COORDINATES: similar to AA sequence:RefSeq:WP_012831203.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009283279.1
COORDINATES: similar to AA sequence:RefSeq:WP_011811158.1
COORDINATES: protein motif:HMM:NF016103.2
COORDINATES: similar to AA sequence:RefSeq:WP_014434154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012119498.1
COORDINATES: protein motif:HMM:NF012958.2
COORDINATES: protein motif:HMM:NF014664.2
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012301332.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02716.1
COORDINATES: similar to AA sequence:RefSeq:WP_013051199.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: similar to AA sequence:RefSeq:WP_015710405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014066735.1
COORDINATES: similar to AA sequence:RefSeq:WP_020507863.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012888956.1
helix-hairpin-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020720531.1
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: similar to AA sequence:RefSeq:WP_014101057.1
COORDINATES: similar to AA sequence:RefSeq:WP_012462490.1
COORDINATES: similar to AA sequence:RefSeq:WP_011958136.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198744.1
COORDINATES: similar to AA sequence:RefSeq:WP_002650771.1
COORDINATES: similar to AA sequence:RefSeq:WP_009965093.1
COORDINATES: protein motif:HMM:TIGR00071.1
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011956703.1
COORDINATES: similar to AA sequence:RefSeq:WP_008405209.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020736582.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_010044235.1
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF012900.2
COORDINATES: similar to AA sequence:RefSeq:WP_017669541.1
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: similar to AA sequence:RefSeq:WP_018607996.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002795595.1
GO:0017061 - S-methyl-5-thioadenosine phosphorylase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]; GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012235989.1
COORDINATES: similar to AA sequence:RefSeq:WP_011318061.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_013536914.1
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
cyclic dehypoxanthinyl futalosine synthase
COORDINATES: similar to AA sequence:RefSeq:WP_007904879.1
COORDINATES: similar to AA sequence:RefSeq:WP_020388698.1
COORDINATES: similar to AA sequence:RefSeq:WP_012830084.1
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: protein motif:HMM:NF013257.2
COORDINATES: similar to AA sequence:RefSeq:WP_012175790.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF004127.0
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF001591.0
GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004274480.1
COORDINATES: similar to AA sequence:RefSeq:WP_006561600.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: protein motif:HMM:NF013524.2
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF017239.2
COORDINATES: protein motif:HMM:NF013507.2
COORDINATES: similar to AA sequence:RefSeq:WP_017319742.1
COORDINATES: similar to AA sequence:RefSeq:WP_010394722.1
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_013175137.1
GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013452358.1
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: similar to AA sequence:RefSeq:WP_012498784.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011143951.1
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013378233.1
COORDINATES: similar to AA sequence:RefSeq:WP_002690128.1
COORDINATES: similar to AA sequence:RefSeq:WP_018234586.1
COORDINATES: protein motif:HMM:NF025684.2
COORDINATES: similar to AA sequence:RefSeq:WP_011689240.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF013345.2
COORDINATES: similar to AA sequence:RefSeq:WP_013008258.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009769192.1
COORDINATES: protein motif:HMM:NF013739.2
COORDINATES: similar to AA sequence:RefSeq:WP_011555975.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]
GO:0043335 - protein unfolding [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpA
COORDINATES: protein motif:HMM:NF015272.2
GO:0020037 - heme binding [Evidence IEA]; GO:0004833 - tryptophan 2,3-dioxygenase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
tryptophan 2,3-dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007290044.1
COORDINATES: protein motif:HMM:NF018613.2
UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF024136.2
COORDINATES: similar to AA sequence:RefSeq:WP_012258177.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_006969518.1
metallophosphatase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014067424.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: similar to AA sequence:RefSeq:WP_013250864.1
COORDINATES: similar to AA sequence:RefSeq:WP_015092389.1
COORDINATES: similar to AA sequence:RefSeq:WP_020676497.1
GO:0008690 - 3-deoxy-manno-octulosonate cytidylyltransferase activity [Evidence IEA]
3-deoxy-manno-octulosonate cytidylyltransferase
COORDINATES: protein motif:HMM:TIGR00229.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_014101435.1
COORDINATES: similar to AA sequence:RefSeq:WP_014101434.1
COORDINATES: similar to AA sequence:RefSeq:WP_020708009.1
COORDINATES: similar to AA sequence:RefSeq:WP_010961828.1
COORDINATES: similar to AA sequence:RefSeq:WP_012629580.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:TIGR04001.1
GO:0019213 - deacetylase activity [Evidence IEA]
bacillithiol biosynthesis deacetylase BshB1
COORDINATES: protein motif:HMM:NF037100.2
COORDINATES: similar to AA sequence:RefSeq:WP_011844071.1
COORDINATES: similar to AA sequence:RefSeq:WP_011429232.1
COORDINATES: protein motif:HMM:NF008911.0
COORDINATES: similar to AA sequence:RefSeq:WP_015941319.1
COORDINATES: protein motif:HMM:NF016629.2
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011429229.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024486.2
COORDINATES: protein motif:HMM:NF019109.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_012844911.1
COORDINATES: similar to AA sequence:RefSeq:WP_014266275.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017838996.1
COORDINATES: protein motif:HMM:NF013767.2
COORDINATES: similar to AA sequence:RefSeq:WP_005008140.1
COORDINATES: similar to AA sequence:RefSeq:WP_006105941.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015334880.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
BsuBI/PstI family type II restriction endonuclease
COORDINATES: protein motif:HMM:NF017077.2
COORDINATES: protein motif:HMM:TIGR03464.1
GO:0004311 - farnesyltranstransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03465.1
GO:0016767 - geranylgeranyl-diphosphate geranylgeranyltransferase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009785992.1
circularly permuted type 2 ATP-grasp protein
COORDINATES: protein motif:HMM:TIGR00423.1
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: protein motif:HMM:NF024206.2
COORDINATES: similar to AA sequence:RefSeq:WP_011684784.1
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR03467.1
COORDINATES: protein motif:HMM:NF019265.2
COORDINATES: similar to AA sequence:RefSeq:WP_002619336.1
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: similar to AA sequence:RefSeq:WP_012121430.1
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: similar to AA sequence:RefSeq:WP_011143098.1
COORDINATES: similar to AA sequence:RefSeq:WP_015250109.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007415689.1
GO:0047343 - glucose-1-phosphate cytidylyltransferase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011684010.1
COORDINATES: similar to AA sequence:RefSeq:WP_008545814.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
COORDINATES: protein motif:HMM:TIGR00268.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
ATP-dependent sacrificial sulfur transferase LarE
COORDINATES: similar to AA sequence:RefSeq:WP_013567832.1
COORDINATES: protein motif:HMM:NF014426.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: similar to AA sequence:RefSeq:WP_011342203.1
COORDINATES: protein motif:HMM:NF021503.2
COORDINATES: similar to AA sequence:RefSeq:WP_012191762.1
COORDINATES: similar to AA sequence:RefSeq:WP_006209236.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF023742.2
COORDINATES: protein motif:HMM:NF018933.2
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF013775.2
COORDINATES: similar to AA sequence:RefSeq:WP_009550101.1
COORDINATES: protein motif:HMM:NF013954.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF014606.2
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019674529.1
COORDINATES: similar to AA sequence:RefSeq:WP_015280221.1
COORDINATES: protein motif:HMM:TIGR02621.1
type I-U CRISPR-associated helicase/endonuclease Cas3
COORDINATES: similar to AA sequence:RefSeq:WP_015745270.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012845380.1
COORDINATES: protein motif:HMM:NF012437.2
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF024118.2
3',5'-cyclic-nucleotide phosphodiesterase
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: protein motif:HMM:NF025049.2
COORDINATES: similar to AA sequence:RefSeq:WP_020004954.1
COORDINATES: similar to AA sequence:RefSeq:WP_019502472.1
COORDINATES: protein motif:HMM:NF014176.2
COORDINATES: protein motif:HMM:NF025875.2
COORDINATES: protein motif:HMM:NF025407.2
COORDINATES: similar to AA sequence:RefSeq:WP_007130038.1
COORDINATES: protein motif:HMM:NF015925.2