Lutra lutra chromosome Y, mLutLut1.2, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Lutrinae; Lutra.
REFSEQ INFORMATION: The reference sequence is identical to\nLR738422.1.\nAssembly name: mLutLut1.2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Wellcome Sanger Institute on\n2020/07/31. The original whole-genome shotgun project has the\naccession CACRWI000000000.2.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_902655055.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/03/2023\n##Genome-Annotation-Data-END##
protein Shroom2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125092636; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125092636, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC125092636, transcript variant X1
uncharacterized LOC125092636, transcript variant X2
lysine-specific demethylase 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine-specific demethylase 6A-like, transcript variant X3
lysine-specific demethylase 6A-like, transcript variant X2
lysine-specific demethylase 6A-like, transcript variant X4
lysine-specific demethylase 6A-like, transcript variant X1
lysine-specific demethylase 6A-like isoform X2
lysine-specific demethylase 6A-like isoform X4
lysine-specific demethylase 6A-like isoform X1
ATP-dependent RNA helicase DDX3X-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase DDX3X-like, transcript variant X2
ATP-dependent RNA helicase DDX3X-like, transcript variant X1
ATP-dependent RNA helicase DDX3X-like, transcript variant X3
ATP-dependent RNA helicase DDX3X-like isoform X2
ATP-dependent RNA helicase DDX3X-like isoform X1
ATP-dependent RNA helicase DDX3X-like isoform X3
probable ubiquitin carboxyl-terminal hydrolase FAF-X; Derived by automated computational analysis using gene prediction method: Gnomon.
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X2
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X4
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X1
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X3
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
splicing factor, proline- and glutamine-rich-like; Derived by automated computational analysis using gene prediction method: Gnomon.
splicing factor, proline- and glutamine-rich-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: splicing factor, proline- and glutamine-rich-like
thymosin beta-4; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 4B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
neuronal membrane glycoprotein M6-b-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 88% coverage of the annotated genomic feature by RNAseq alignments
keratin, type I cytoskeletal 18-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
syncytin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 38% coverage of the annotated genomic feature by RNAseq alignments
AP-1 complex subunit sigma-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
AP-1 complex subunit sigma-2-like, transcript variant X2
AP-1 complex subunit sigma-2-like, transcript variant X1
CTP synthase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
oral-facial-digital syndrome 1 protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
oral-facial-digital syndrome 1 protein-like, transcript variant X6
oral-facial-digital syndrome 1 protein-like, transcript variant X5
oral-facial-digital syndrome 1 protein-like, transcript variant X4
oral-facial-digital syndrome 1 protein-like, transcript variant X3
oral-facial-digital syndrome 1 protein-like, transcript variant X10
oral-facial-digital syndrome 1 protein-like, transcript variant X8
oral-facial-digital syndrome 1 protein-like, transcript variant X1
oral-facial-digital syndrome 1 protein-like, transcript variant X2
oral-facial-digital syndrome 1 protein-like, transcript variant X11
oral-facial-digital syndrome 1 protein-like, transcript variant X9
oral-facial-digital syndrome 1 protein-like isoform X3
oral-facial-digital syndrome 1 protein-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
oral-facial-digital syndrome 1 protein-like isoform X2
oral-facial-digital syndrome 1 protein-like isoform X5
oral-facial-digital syndrome 1 protein-like isoform X1
oral-facial-digital syndrome 1 protein-like isoform X4
oral-facial-digital syndrome 1 protein-like isoform X6
amelogenin, X isoform-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
eukaryotic translation initiation factor 2 subunit 3, X-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 2 subunit 3, X-linked-like, transcript variant X1
eukaryotic translation initiation factor 2 subunit 3, X-linked-like, transcript variant X2
eukaryotic translation initiation factor 2 subunit 3, X-linked-like isoform X1
eukaryotic translation initiation factor 2 subunit 3, X-linked-like isoform X2
U6 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
Derived by automated computational analysis using gene prediction method: cmsearch.
zinc finger X-chromosomal protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger X-chromosomal protein-like, transcript variant X7
zinc finger X-chromosomal protein-like, transcript variant X3
zinc finger X-chromosomal protein-like, transcript variant X9
zinc finger X-chromosomal protein-like, transcript variant X8
zinc finger X-chromosomal protein-like, transcript variant X5
zinc finger X-chromosomal protein-like, transcript variant X4
zinc finger X-chromosomal protein-like, transcript variant X6
zinc finger X-chromosomal protein-like, transcript variant X10
zinc finger X-chromosomal protein-like, transcript variant X1
zinc finger X-chromosomal protein-like, transcript variant X2
zinc finger X-chromosomal protein-like, transcript variant X11
zinc finger X-chromosomal protein-like isoform X1
zinc finger X-chromosomal protein-like isoform X2
lysine-specific demethylase 5D; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine-specific demethylase 5D, transcript variant X12
lysine-specific demethylase 5D, transcript variant X1
lysine-specific demethylase 5D, transcript variant X2
lysine-specific demethylase 5D, transcript variant X4
lysine-specific demethylase 5D, transcript variant X5
lysine-specific demethylase 5D, transcript variant X7
lysine-specific demethylase 5D, transcript variant X8
lysine-specific demethylase 5D, transcript variant X3
lysine-specific demethylase 5D, transcript variant X6
lysine-specific demethylase 5D, transcript variant X9
lysine-specific demethylase 5D, transcript variant X10
lysine-specific demethylase 5D, transcript variant X11
lysine-specific demethylase 5D isoform X1
lysine-specific demethylase 5D isoform X2
lysine-specific demethylase 5D isoform X12
lysine-specific demethylase 5D isoform X4
lysine-specific demethylase 5D isoform X5
lysine-specific demethylase 5D isoform X7
lysine-specific demethylase 5D isoform X8
lysine-specific demethylase 5D isoform X3
lysine-specific demethylase 5D isoform X6
lysine-specific demethylase 5D isoform X9
lysine-specific demethylase 5D isoform X10
lysine-specific demethylase 5D isoform X11
lysine-specific demethylase 5D, transcript variant X13
lysine-specific demethylase 5D, transcript variant X15
lysine-specific demethylase 5D, transcript variant X14
lysine-specific demethylase 5D isoform X13
lysine-specific demethylase 5D isoform X14
uncharacterized LOC125092632; Derived by automated computational analysis using gene prediction method: Gnomon.
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
hsc70-interacting protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125092609; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 32% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC125092637; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00015
heat shock transcription factor, Y-linked-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heat shock transcription factor, Y-linked-like
uncharacterized LOC125092634; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
eukaryotic translation initiation factor 1A, X-chromosomal-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A, X-chromosomal-like
uncharacterized LOC125092600; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125092600, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC125092600, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
uncharacterized LOC125092626; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC125092626
uncharacterized LOC125092605; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC125092627; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments
RNA-binding motif protein, X chromosome-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, X chromosome-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
RNA-binding motif protein, X chromosome-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
RNA-binding motif protein, X chromosome-like isoform X1
RNA-binding motif protein, X chromosome-like isoform X2
testis-specific Y-encoded protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded protein 2-like
testis-specific Y-encoded protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 58% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
cullin-4B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
CCAAT/enhancer-binding protein gamma-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments