Thiothrix winogradskyi strain CT3 plasmid pThCT3_2, complete sequence.
type: Entry
definition: Thiothrix winogradskyi strain CT3 plasmid pThCT3_2, complete sequence.
sequence version: NZ_CP091246.1
sequence date: 2022-09-15
sequence: sequence
division: CON
label: NZ_CP091246.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN24969931
keyword: RefSeq
source: Thiothrix winogradskyi
organism: Thiothrix winogradskyi
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
references: 35889019
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP091246.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 136.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/14/2022 07:39:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,345\nCDSs (total) :: 4,274\nGenes (coding) :: 4,213\nCDSs (with protein) :: 4,213\nGenes (RNA) :: 71\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 27 of 61\nPseudo Genes (incomplete) :: 35 of 61\nPseudo Genes (internal stop) :: 2 of 61\nPseudo Genes (multiple problems) :: 3 of 61\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20671
topology: circular
so has quality: SO_0000988
location: 1..20671
location: region:1-20671:1
RO_0002162: 96472

NZ_CP091246
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN24969931
type: BioSample
SIO_000068: biosample

1
title: Two New Species of Filamentous Sulfur Bacteria of the Genus Thiothrix, Thiothrix winogradskyi sp. nov. and 'Candidatus Thiothrix sulfatifontis' sp. nov
author: Ravin, N.V.
author: Rossetti, S.
author: Beletsky, A.V.
author: Kadnikov, V.V.
author: Rudenko, T.S.
author: Smolyakov, D.D.
author: Moskvitina, M.I.
author: Gureeva, M.V.
author: Mardanov, A.V.
author: Grabovich, M.Y.
journal: Microorganisms 10 (7), 1300 (2022)
pubmed: 35889019
comments: Erratum:[Microorganisms. 2022 Aug 18;10(8):. PMID: 36014104] Publication Status: Online-Only

35889019
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Ravin, N.V.
author: Rossetti, S.
author: Beletsky, A.V.
author: Kadnikov, V.
author: Rudenko, T.S.
author: Smolyakov, D.
author: Moskvitina, M.I.
author: Gureeva, M.V.
author: Mardanov, A.V.
author: Grabovich, M.Y.
journal: Submitted (18-JAN-2022) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20671:1
position: 20671
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20671:1:source
so part of: sequence
organism: Thiothrix winogradskyi
mol type: genomic DNA
strain: CT3
isolation source: DSMZ collection (DSM 12730)
type material: type strain of Thiothrix winogradskyi
plasmid: pThCT3_2

96472
type: Taxonomy
SIO_000068: taxonomy

L2Y54_RS21535
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21535
old locus tag: L2Y54_21535
so part of: sequence
location: join(20524..20671,1..1184)
location: region:1-20671:1
so has part: feature:20524-20671:1:exon
so has part: feature:1-1184:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:20524-20671:1:exon

position:20524:1
position: 20524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-1184:1:exon

position:1184:1
position: 1184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

L2Y54_RS21535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21535
old locus tag: L2Y54_21535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO component: GO:0009279 - cell outer membrane [Evidence IEA]
GO function: GO:0015288 - porin activity [Evidence IEA]
GO process: GO:0006810 - transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: TolC family outer membrane protein
translation: MNKTLLAASLSLLAVPLLALTANNAHAENLLQVYQQAKNHDAQLQAQESGHLATLEQRQQALAGFRPQVNLSGNASYAAERDSLTSKTVDGNQANYALTLDQPLYNQGVKANIAKTDALVRQSAATLDAVRQNLIVRVATAYFETLQAQDNLTFAKAEKAAINRQLVQAKAYFEAGRSAITDVKEAEASDATAQAQEIAATQQLDIAREQLRVLTGSVYPSLDVPRTNMPLAMPTPNSIDAWVNIAKQNNHQLRASQQAMAAAQKGVAVQRANKLPTVNLFAKQTGSYLNNDTYINQRSNDVAVGISVSMPLYTGGATTSKIREAQFTFQQTQQSYNLQASQTEQQVRSAFLSIQSSMSQVIANQQALASAETATQATQAGFEVGTRTAVDVLNAVRAEFRSRRDHSRARYDFLLNTLLLRQAAGTLTEKDVMAVSTMMRAQN
SIO_010081: L2Y54_RS21535
subclass of: SO_0000673
so part of: L2Y54_RS21535
location: join(20524..20671,1..1184)
location: region:1-20671:1
so has part: feature:20524-20671:1:exon
so has part: feature:1-1184:1:exon

WP_236502147.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20524-20671:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-1184:1:exon

L2Y54_RS21540
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21540
old locus tag: L2Y54_21540
so part of: sequence
location: 1255..1623
location: region:1255-1623:1
so has part: feature:1255-1623:1:exon
subclass of: SO_0000010

position:1255:1
position: 1255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1623:1
position: 1623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1255-1623:1:exon

L2Y54_RS21540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21540
old locus tag: L2Y54_21540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKPTIHRLLSFLLACVLLAQTAVGVAGWHLDIPHSAQDTHIAHCAVMEKHAAVWSGHDHSGETDERGEQHHHCCHTAPGSLAVPVASLPLPPAESATLIPAFSTEPYRNPLADLLIRPPIA
SIO_010081: L2Y54_RS21540
subclass of: SO_0000673
so part of: L2Y54_RS21540
location: 1255..1623
location: region:1255-1623:1
so has part: feature:1255-1623:1:exon

WP_236502148.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1255-1623:1:exon

L2Y54_RS21545
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21545
old locus tag: L2Y54_21545
so part of: sequence
location: 1681..2067
location: region:1681-2067:1
so has part: feature:1681-2067:1:exon
subclass of: SO_0000010

position:1681:1
position: 1681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2067:1
position: 2067
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1681-2067:1:exon

L2Y54_RS21545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21545
old locus tag: L2Y54_21545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKTLLAALLPLFVVGCAATPDKTALQAQGISVDGASTVAFRSVRVEGTTLQGSLKRIGRNPVHFGHLDYTVTDASGKTLQSEQTDYSGAIKQRRSPNASRFSIPLKQAWQPGVHRASIVWHDQPHQP
SIO_010081: L2Y54_RS21545
subclass of: SO_0000673
so part of: L2Y54_RS21545
location: 1681..2067
location: region:1681-2067:1
so has part: feature:1681-2067:1:exon

WP_236502149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1681-2067:1:exon

L2Y54_RS21550
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21550
old locus tag: L2Y54_21550
so part of: sequence
location: 2081..2632
location: region:2081-2632:1
so has part: feature:2081-2632:1:exon
subclass of: SO_0000010

position:2081:1
position: 2081
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2632:1
position: 2632
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2081-2632:1:exon

L2Y54_RS21550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21550
old locus tag: L2Y54_21550
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKLLAGCVCSLLFACAAFAGEGHDHGEEQAAVAPDSPTAPRLVMESTQFELVGTLEGDGLHLFLDDHASNVPVTDASVELEIAGQRIKAEAEADGSYHAAMSQPLPEGEHAVMATILAGDTSDLLTGNLDVHAADAMHPEPTATPSVNGWGFLPWLLGLAVIAVALTVFTLRHDIRARGKKS
SIO_010081: L2Y54_RS21550
subclass of: SO_0000673
so part of: L2Y54_RS21550
location: 2081..2632
location: region:2081-2632:1
so has part: feature:2081-2632:1:exon

WP_236502150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2081-2632:1:exon

L2Y54_RS21555
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21555
old locus tag: L2Y54_21555
so part of: sequence
location: 2629..3753
location: region:2629-3753:1
so has part: feature:2629-3753:1:exon
subclass of: SO_0000010

position:2629:1
position: 2629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3753:1
position: 3753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2629-3753:1:exon

L2Y54_RS21555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21555
old locus tag: L2Y54_21555
inference: COORDINATES: protein motif:HMM:NF027890.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HlyD family efflux transporter periplasmic adaptor subunit
translation: MNKCPLLVSLLVCFPLLVLAGGDGSDGHSHGEETTPLTVINPNTPQRQLDGSVFLPKTSQRFIQVRTQPAKLETLPRSLILNGQVVAGMDASSKVQALQAGRLDIANGSLPAIGDKVEKGQVLATLTLAKDAQEGTNQAAEAADLQEQLKLAELEQQRLQGLGDLIPRRDVDTAAATVRSLQARLAVFRKGAKGVTETVRSPISGIVTASYAANGQAVQAGDLLLDIIDPSKLQVEAVTYDAALPANIAAANVTIGKQTLALRYQGNSQQLRQQALPLRFSVEGEALTQLAAGSPVQVTVQTRETLQGVAVPAEALARNPSNQTVVWVKTAPEQYAPRVVQYQPLDGERVMITAGLPDGERVVVQATNLINQIR
SIO_010081: L2Y54_RS21555
subclass of: SO_0000673
so part of: L2Y54_RS21555
location: 2629..3753
location: region:2629-3753:1
so has part: feature:2629-3753:1:exon

WP_236502151.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2629-3753:1:exon

L2Y54_RS21560
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21560
old locus tag: L2Y54_21560
so part of: sequence
location: 3763..6867
location: region:3763-6867:1
so has part: feature:3763-6867:1:exon
subclass of: SO_0000010

position:3763:1
position: 3763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6867:1
position: 6867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3763-6867:1:exon

L2Y54_RS21560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21560
old locus tag: L2Y54_21560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014237949.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO process: GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: efflux RND transporter permease subunit
translation: MFNWLLNASLGNRLLVLVASAMLMIYGALQLPQTAVDVFPDLNRPTVTLMTEAGGMAPEEVERLISFPLETTLNGLPGIESVRSVSSAGLSFVYAVFDWDTDIYRARQMVSERLGTLGSSLPPGLEVHMGPISSIMGEIMMVAVPIDPAKIDPMAVREYADWVLRPRLLSIAGVAQVIPIGGEVRQFQVQPDMRRMTDLGISLAQLTNALEGFANNTSGGFMELSGKEYLIRHIGRTSSLEDLQNLAVTATAGQPILLKQVASVIFAPKVKRGDAGFNGQPAVILGIQKQPDADTIQLTQAIETALESMKTSLPQGMSEPRVTFRQASFIEASIGNLEHKLVLASLLVMVILFLFLGNFRTTLISLMAIPLSILCTVLVFRYLDLSINTMTLGGLAIAIGELVDDAVVGVENVIRRLRNNRLHKTQLAPLKIVLHATLEVRSAIVYATIIVVLVFLPLFALPGMEGKLFVPLGIAYITSILVSMLVSVTLTPVMAYYLLPNMKQLDHPEPWLVRWLKRGYAKVLETVLDFPRTLLGLGLVAVLLAGSLVPLFPTTFLPPFNEGTLLVSVRLTPGVTLAESVRIAAKAETLLQDVPEVSHVGRRSGRAELDEHAEGVHNSELDIALKPSERPMDVVYGDIRARLAPLPVNVSIGQPISHRIDHMLSGVRAQIAIKLFGDDLDTLRAQGERLQQALATVDGVADLNMEKQVLAPQIKVYVDYAVAGQYGLSGAALLRELQMLVDGATINEIVDGNRRFKLVLRLPEAARSTTQLQDLLINTPLGQVPLNKLAKIEESDGPNQVSRDNGQRRIVLSANVQGRALSEVVADMRAKVAEFQLPEGYFITIGGQFEAQEQAAQRITLLAAVAALLVFLTLYSRYQSTTLALLIMANIPLALVGSVIGLWLSGQPLSVAALIGFITLAGISTRNGILKTSHYLNLMRLEGESFTRAMIIRGSLERLSPVLMTALVAAFALMPLLFEAEQPGTEILHPVAVVIFSGLISSTLLDTFLTPAMFWLFGRKPAEKLLDMASDEAL
SIO_010081: L2Y54_RS21560
subclass of: SO_0000673
so part of: L2Y54_RS21560
location: 3763..6867
location: region:3763-6867:1
so has part: feature:3763-6867:1:exon

WP_236502152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3763-6867:1:exon

L2Y54_RS21565
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21565
old locus tag: L2Y54_21565
so part of: sequence
location: 6900..7475
location: region:6900-7475:1
so has part: feature:6900-7475:1:exon
subclass of: SO_0000010

position:6900:1
position: 6900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7475:1
position: 7475
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6900-7475:1:exon

L2Y54_RS21565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21565
old locus tag: L2Y54_21565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLLPTLLIVCGLLASPMVLAEEPPKHGEPGHDHAKDHGQTTTPEAKPENEHKGESAEDHAKHGHEGHDNKDGEHDHAGHDHAHDDQPHHGGIVAVVDEIHHELVMADDGKVSLYAEGLPQGDALKAVKVRLTVLKGKDKQEAELTLVEGDEPRFDAPAEVKLVAGDKVVAMIQPAEGKPRMAKFEIPAAK
SIO_010081: L2Y54_RS21565
subclass of: SO_0000673
so part of: L2Y54_RS21565
location: 6900..7475
location: region:6900-7475:1
so has part: feature:6900-7475:1:exon

WP_236502153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6900-7475:1:exon

L2Y54_RS21570
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21570
old locus tag: L2Y54_21570
so part of: sequence
location: 7598..8599
location: region:7598-8599:1
so has part: feature:7598-8599:1:exon
subclass of: SO_0000010

position:7598:1
position: 7598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8599:1
position: 8599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7598-8599:1:exon

L2Y54_RS21570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21570
old locus tag: L2Y54_21570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003159119.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MALTKDQIFQAADQLAAAGTAPTLAAAGTAPTLAAVRSAVGGGSYTTINEALKEWKAKQQATNAPIREPAPAAVATRLEELGADIWAVALELANARLTSEREALEATRQQLETAQQEATELADQLSAELETLQAQHQQATQDLQAASTTIETLRQENATLSRQLATTEARAEETTKRADDLKAELQHAHAANTEQRQRHTHEAQALQATLTSTSETLKTQTAEAVRLQAQLDQAQAQIANLQQQQQAQQERHTSEIQQQGERYANETHRLNERLTQAQTEREQALQAAGATREEAAGMRGELEALRVQNAALLATLTPVTDIPKGKVSKPPKT
SIO_010081: L2Y54_RS21570
subclass of: SO_0000673
so part of: L2Y54_RS21570
location: 7598..8599
location: region:7598-8599:1
so has part: feature:7598-8599:1:exon

WP_236502154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7598-8599:1:exon

L2Y54_RS21575
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21575
old locus tag: L2Y54_21575
so part of: sequence
location: complement(8768..9178)
location: region:8768-9178:-1
so has part: feature:8768-9178:-1:exon
subclass of: SO_0000010

position:8768:-1
position: 8768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9178:-1
position: 9178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8768-9178:-1:exon

L2Y54_RS21575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21575
old locus tag: L2Y54_21575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEINIPSIEAQKRFIFEQATKEAIRQLEQNLTAPIIEDLGMDEGQYSNEHLLPENRWKPPHQDIVYAYIEQFKRHSEYKSDKAVAAWLGMRGNNAERNLRAFKTGESSPPYGIWRKLLVATGRVPQEIIPVVAFMR
SIO_010081: L2Y54_RS21575
subclass of: SO_0000673
so part of: L2Y54_RS21575
location: complement(8768..9178)
location: region:8768-9178:-1
so has part: feature:8768-9178:-1:exon

WP_236502155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8768-9178:-1:exon

L2Y54_RS21580
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21580
old locus tag: L2Y54_21580
so part of: sequence
location: complement(9221..9505)
location: region:9221-9505:-1
so has part: feature:9221-9505:-1:exon
subclass of: SO_0000010

position:9221:-1
position: 9221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9505:-1
position: 9505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9221-9505:-1:exon

L2Y54_RS21580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21580
old locus tag: L2Y54_21580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020395385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLKDVATIRLDFADADFWLVRRGSLETIGQPTKTYSPYYIGIRIEQTALILPDYLYYVFMNLHQVGQWKPLAHGTLSLVHIRTEDVRNIALTH
SIO_010081: L2Y54_RS21580
subclass of: SO_0000673
so part of: L2Y54_RS21580
location: complement(9221..9505)
location: region:9221-9505:-1
so has part: feature:9221-9505:-1:exon

WP_236502157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9221-9505:-1:exon

L2Y54_RS21585
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21585
old locus tag: L2Y54_21585
so part of: sequence
location: complement(9682..10107)
location: region:9682-10107:-1
so has part: feature:9682-10107:-1:exon
subclass of: SO_0000010

position:9682:-1
position: 9682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10107:-1
position: 10107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9682-10107:-1:exon

L2Y54_RS21585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21585
old locus tag: L2Y54_21585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLQSSTAYAQARRSPTLCLFVAIATALLSGLRRTRGSATNSHSYGGFGLGFSVTSLPQCRRGTFSASICAVRRLPQGRYAVGCAASGKKKRRGFASVSAACFLSSCAGGGKVGGVGKSSQRQKHPHQFIYGRAVQPPPNGK
SIO_010081: L2Y54_RS21585
subclass of: SO_0000673
so part of: L2Y54_RS21585
location: complement(9682..10107)
location: region:9682-10107:-1
so has part: feature:9682-10107:-1:exon

WP_236502158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9682-10107:-1:exon

L2Y54_RS21590
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21590
old locus tag: L2Y54_21590
so part of: sequence
location: complement(10764..11006)
location: region:10764-11006:-1
so has part: feature:10764-11006:-1:exon
subclass of: SO_0000010

position:10764:-1
position: 10764
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11006:-1
position: 11006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10764-11006:-1:exon

L2Y54_RS21590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21590
old locus tag: L2Y54_21590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEHDTNTLWISGWMWGKYPEQAHGYYLPQDETEAGEWLEGFRWGTTEACQFHRLWEWLDETLAGHNTTIQLVNKVAGNA
SIO_010081: L2Y54_RS21590
subclass of: SO_0000673
so part of: L2Y54_RS21590
location: complement(10764..11006)
location: region:10764-11006:-1
so has part: feature:10764-11006:-1:exon

WP_236502122.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10764-11006:-1:exon

L2Y54_RS21595
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21595
old locus tag: L2Y54_21595
so part of: sequence
location: complement(10987..11214)
location: region:10987-11214:-1
so has part: feature:10987-11214:-1:exon
subclass of: SO_0000010

position:10987:-1
position: 10987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11214:-1
position: 11214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10987-11214:-1:exon

L2Y54_RS21595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21595
old locus tag: L2Y54_21595
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEEQHGYGTVEAQLKRLETHLQTISTDPAASDWLKRAVVELWERDVLRDLLEEKHRIDRLLLEKWAKNHDGTRH
SIO_010081: L2Y54_RS21595
subclass of: SO_0000673
so part of: L2Y54_RS21595
location: complement(10987..11214)
location: region:10987-11214:-1
so has part: feature:10987-11214:-1:exon

WP_236502123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10987-11214:-1:exon

L2Y54_RS21600
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21600
old locus tag: L2Y54_21600
so part of: sequence
location: complement(11211..11855)
location: region:11211-11855:-1
so has part: feature:11211-11855:-1:exon
subclass of: SO_0000010

position:11211:-1
position: 11211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11855:-1
position: 11855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11211-11855:-1:exon

L2Y54_RS21600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21600
old locus tag: L2Y54_21600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706484.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MANYAYLRVSTDQQDVDNQRHGILEYANRNSITNIQFVEDTVSGKVKWKERRIGDLLLKTMQPGDTAVFAEISRMARSTLQVLEMLEHASTNNMQIHVVKQNMRFDDSLNAKIMATVFGMAAEIEREFISLRTKEALAKRKADGVTLGRPKGRAETVKLDARADEIRRYLAKDISKRAIAKLVDCSKSTLYNWLEREGLNKKKPKTAKAPVTTQ
SIO_010081: L2Y54_RS21600
subclass of: SO_0000673
so part of: L2Y54_RS21600
location: complement(11211..11855)
location: region:11211-11855:-1
so has part: feature:11211-11855:-1:exon

WP_236502124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11211-11855:-1:exon

L2Y54_RS21605
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21605
old locus tag: L2Y54_21605
so part of: sequence
location: 12182..12922
location: region:12182-12922:1
so has part: feature:12182-12922:1:exon
subclass of: SO_0000010

position:12182:1
position: 12182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12922:1
position: 12922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12182-12922:1:exon

L2Y54_RS21605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21605
old locus tag: L2Y54_21605
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEFLKIRRGTGQIRADGSRYAVPLYVTKTKRKGTTISEEAISTKRPILVTGAHDSGKTKWVERLHEHAREIWGTKSKTAPLYLNTLSPLSAWCDDPDLEKWWEGLRVTEEAADPATARVPWKALKQHDRAEALPDYCKDTKAVLFIDDAHKLAGRKLQIARKCVLASRLFVIAASEEQRMPPNLRTVVMRRDPQIFRLDTDVSYDATNLFMWAVLVACLAAGWFEAAMVLGGLKMLGSGRRAARAD
SIO_010081: L2Y54_RS21605
subclass of: SO_0000673
so part of: L2Y54_RS21605
location: 12182..12922
location: region:12182-12922:1
so has part: feature:12182-12922:1:exon

WP_236502126.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12182-12922:1:exon

L2Y54_RS21610
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21610
old locus tag: L2Y54_21610
so part of: sequence
location: 12888..13712
location: region:12888-13712:1
so has part: feature:12888-13712:1:exon
subclass of: SO_0000010

position:12888:1
position: 12888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13712:1
position: 13712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12888-13712:1:exon

L2Y54_RS21610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21610
old locus tag: L2Y54_21610
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALVAVLLAPISASAADETADYNAVKAETLRLAGVATPAGAEGEDTKVSSETASAWWPWKGGEAEKPPEPKTYKTPTMVDDGLDYHDKPAALVQAPALDADAIYKSVLGCYPEKSKFDIDVDLRAAIRSSDVLDLQDTTTGLGKNYVGIVASMPLYSGKELDREKEREYVRRKDTAKAVADFISAIAGRNHAVRELALYRSLEARSAVRVQQGVTESTEQVGYLEKVASSQEKLINEETKIMESRLLLSGMCDPKNAETIGGWLKKVSAVPDAE
SIO_010081: L2Y54_RS21610
subclass of: SO_0000673
so part of: L2Y54_RS21610
location: 12888..13712
location: region:12888-13712:1
so has part: feature:12888-13712:1:exon

WP_236502127.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12888-13712:1:exon

L2Y54_RS21615
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21615
old locus tag: L2Y54_21615
so part of: sequence
location: 13752..14279
location: region:13752-14279:1
so has part: feature:13752-14279:1:exon
subclass of: SO_0000010

position:13752:1
position: 13752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14279:1
position: 14279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13752-14279:1:exon

L2Y54_RS21615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21615
old locus tag: L2Y54_21615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MKWINHLAIAGATTALVSPALVPVALLGSTAPDWLEWALEKFGHRVRHRTLTHIMLYWIGALVFALVLWDFHGILAAFAWGGLSHVLADSFTVTGVPFSPFSDRRFHLFGGRLRTGDSGEYMVAWGVVGVCVVLALLFKPHGGAGWYPFFYDWAGLYQDGVVDAKEWKDNRLKFF
SIO_010081: L2Y54_RS21615
subclass of: SO_0000673
so part of: L2Y54_RS21615
location: 13752..14279
location: region:13752-14279:1
so has part: feature:13752-14279:1:exon

WP_236502129.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13752-14279:1:exon

L2Y54_RS21620
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21620
old locus tag: L2Y54_21620
so part of: sequence
location: complement(14293..14502)
location: region:14293-14502:-1
so has part: feature:14293-14502:-1:exon
subclass of: SO_0000010

position:14293:-1
position: 14293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14502:-1
position: 14502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14293-14502:-1:exon

L2Y54_RS21620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21620
old locus tag: L2Y54_21620
inference: COORDINATES: protein motif:HMM:NF020835.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MSLKDALAAKKSRDTDQKTAAIADVTKEPLKRLNVNLPESVMKQFKAKAAMEGKEMSALVNEWINHYLR
SIO_010081: L2Y54_RS21620
subclass of: SO_0000673
so part of: L2Y54_RS21620
location: complement(14293..14502)
location: region:14293-14502:-1
so has part: feature:14293-14502:-1:exon

WP_236502131.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14293-14502:-1:exon

L2Y54_RS21625
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21625
old locus tag: L2Y54_21625
so part of: sequence
location: complement(14499..15131)
location: region:14499-15131:-1
so has part: feature:14499-15131:-1:exon
subclass of: SO_0000010

position:14499:-1
position: 14499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15131:-1
position: 15131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14499-15131:-1:exon

L2Y54_RS21625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21625
old locus tag: L2Y54_21625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020560825.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MAHVIAVLNQKGGSGKTTIATNLAHALKLADAKVLLVDSDPQGSARDWNEANGGQLLPVVGLDRETLATDLKAIMGGYDFVVIDGAPQVARLAAAAVKSADVVLIPVQPSPYDIWAAADLVEVIKARQEITNGKPAAAFLISRAIKNTKLSGEVAEALEGYGFPILAHGTTQRVIYPTSAASGQTVFSESGNPAIEEIEAIAKDVLELLP
SIO_010081: L2Y54_RS21625
subclass of: SO_0000673
so part of: L2Y54_RS21625
location: complement(14499..15131)
location: region:14499-15131:-1
so has part: feature:14499-15131:-1:exon

WP_236502133.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14499-15131:-1:exon

L2Y54_RS21630
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21630
old locus tag: L2Y54_21630
so part of: sequence
location: 15573..15854
location: region:15573-15854:1
so has part: feature:15573-15854:1:exon
subclass of: SO_0000010

position:15573:1
position: 15573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15854:1
position: 15854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15573-15854:1:exon

L2Y54_RS21630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21630
old locus tag: L2Y54_21630
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSYRELTEVEKDYLAQGGRVFLVSDQNEVVIFKKGEEPFYKKDHGTGVSLKYHTEDLALQHAWITACLSEDKPMVEGVVVGLLVSAPTRTLRT
SIO_010081: L2Y54_RS21630
subclass of: SO_0000673
so part of: L2Y54_RS21630
location: 15573..15854
location: region:15573-15854:1
so has part: feature:15573-15854:1:exon

WP_236502135.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15573-15854:1:exon

L2Y54_RS21635
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21635
old locus tag: L2Y54_21635
so part of: sequence
location: 16160..16981
location: region:16160-16981:1
so has part: feature:16160-16981:1:exon
subclass of: SO_0000010

position:16160:1
position: 16160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16981:1
position: 16981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16160-16981:1:exon

L2Y54_RS21635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21635
old locus tag: L2Y54_21635
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNLVKYAVPEGEYGKAVALGDLHVNMSNTLVRASHGLNLVEKRIIMACISTMDSMRIGKRDQYDQALVRLSAKDYGGEFGIGRNNAYNELKAASESLFERYVVMRNETPKGMRVHKFRWVSGVVYLEGEGIIELTFTREVMPYLTFLRGKYTSYQLKVASALRSVYSWRLLELFKSWETTKELYVTMEDFRRTMEIPESYVYADVRVKCIDVAVKELQEKNNLNITWTPIKKSRAVTSLRFKWKEDDQIKLNLEGGEIIKPKRTRKAKKPDE
SIO_010081: L2Y54_RS21635
subclass of: SO_0000673
so part of: L2Y54_RS21635
location: 16160..16981
location: region:16160-16981:1
so has part: feature:16160-16981:1:exon

WP_236502136.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16160-16981:1:exon

L2Y54_RS21640
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21640
old locus tag: L2Y54_21640
so part of: sequence
location: 17069..17284
location: region:17069-17284:1
so has part: feature:17069-17284:1:exon
subclass of: SO_0000010

position:17069:1
position: 17069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17284:1
position: 17284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17069-17284:1:exon

L2Y54_RS21640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21640
old locus tag: L2Y54_21640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTNDNPFPRSGNNFTTILCLDDIKDPDALLEALELEMVFFEFELPQTMQKRTDTVDSGLSASAETAEEAR
SIO_010081: L2Y54_RS21640
subclass of: SO_0000673
so part of: L2Y54_RS21640
location: 17069..17284
location: region:17069-17284:1
so has part: feature:17069-17284:1:exon

WP_236502138.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17069-17284:1:exon

L2Y54_RS21645
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21645
old locus tag: L2Y54_21645
so part of: sequence
location: complement(17432..18514)
location: region:17432-18514:-1
so has part: feature:17432-18514:-1:exon
subclass of: SO_0000010

position:17432:-1
position: 17432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18514:-1
position: 18514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17432-18514:-1:exon

L2Y54_RS21645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21645
old locus tag: L2Y54_21645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016704704.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PDDEXK nuclease domain-containing protein
translation: MNSNLPTTAIATFTEVVQLIQTAKQQAFKAVNTTLLGLYWQIGAIISKKLESAEWGNGVVEQLAQHVAHHQPGLRGFTRSNLFRMSQFYNTYRDDKSLQEMALQLPWTHNLIIMGQAKRQEEREFYLRLATREQWGKRELERQFKSALFERTVLNPLKVAPLVRQMHPQADNVFKDAYMLEFLGLPDDHSEADLHRGLLHKLKNFLAELGRDFCFIGSEFPLQVGGRDFALDLLFFHRGLNCLVAIELKVGRFEPEYLGKLEFYLEALDRDVKKRHENPAIGVEFYLEALDRDVKKRHENPAIGVLLCASKDDEIVEYALSRSLSPALIAEYQTCLPDKKLLQDKLHEFYGQLPSETDAS
SIO_010081: L2Y54_RS21645
subclass of: SO_0000673
so part of: L2Y54_RS21645
location: complement(17432..18514)
location: region:17432-18514:-1
so has part: feature:17432-18514:-1:exon

WP_236502140.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17432-18514:-1:exon

L2Y54_RS21650
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21650
old locus tag: L2Y54_21650
so part of: sequence
location: 18626..19039
location: region:18626-19039:1
so has part: feature:18626-19039:1:exon
subclass of: SO_0000010

position:18626:1
position: 18626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19039:1
position: 19039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18626-19039:1:exon

L2Y54_RS21650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21650
old locus tag: L2Y54_21650
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQPIITLAVVGIAAVSLMGCQLKEDSMDYFKNESEVMIIKGQNHDLNIENRLDRVSLYGSVDITHDQAGLAQALRLKGVVDGMVSTLAEEQTKGVLPANIVPILHYSIPVPPTPPATDNVPLSGFGIQQAVPTRYG
SIO_010081: L2Y54_RS21650
subclass of: SO_0000673
so part of: L2Y54_RS21650
location: 18626..19039
location: region:18626-19039:1
so has part: feature:18626-19039:1:exon

WP_236502142.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18626-19039:1:exon

L2Y54_RS21655
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21655
old locus tag: L2Y54_21655
so part of: sequence
location: complement(18933..19349)
location: region:18933-19349:-1
so has part: feature:18933-19349:-1:exon
subclass of: SO_0000010

position:18933:-1
position: 18933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19349:-1
position: 19349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18933-19349:-1:exon

L2Y54_RS21655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21655
old locus tag: L2Y54_21655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013149410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MQQKLTIGMLSKQSAVKVETIRYYERSGLLPIPTRSASGYRYYDGEDVKRLRFIRRGRSLGFGLEEIHSLLQLADQPQQPCHEADQLVQAHLAEVDAKIRDLQAIRSVLEQLAGCQSQTAAHCRLLEALEERVCCSAK
SIO_010081: L2Y54_RS21655
subclass of: SO_0000673
so part of: L2Y54_RS21655
location: complement(18933..19349)
location: region:18933-19349:-1
so has part: feature:18933-19349:-1:exon

WP_236502143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18933-19349:-1:exon

L2Y54_RS21660
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21660
old locus tag: L2Y54_21660
so part of: sequence
location: 19413..20045
location: region:19413-20045:1
so has part: feature:19413-20045:1:exon
subclass of: SO_0000010

position:19413:1
position: 19413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20045:1
position: 20045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19413-20045:1:exon

L2Y54_RS21660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21660
old locus tag: L2Y54_21660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007638973.1
GO component: GO:0016021 - integral component of membrane [Evidence IEA]
GO function: GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO process: GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation transporter
translation: MSAQCGCNHSCSTEAKTPHGRYRLILWLALLINAAMFGVEMLFGVWAQSASLLADSLDFFGDAANYGISLWVLGMGLAIRAKASLLKAATMAVFGVWVLGRTGWGLWTGNLPDAVTMGSVALLALAANAAVAAMLYVYREGDSNRRSVWICSRNDAIGNVAVVLAAVGVFGTASGLPDLIVAGVMATLALTGAWQMWGYAQQDLHRAAAA
SIO_010081: L2Y54_RS21660
subclass of: SO_0000673
so part of: L2Y54_RS21660
location: 19413..20045
location: region:19413-20045:1
so has part: feature:19413-20045:1:exon

WP_236502145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19413-20045:1:exon

L2Y54_RS21665
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21665
old locus tag: L2Y54_21665
so part of: sequence
location: 20110..20466
location: region:20110-20466:1
so has part: feature:20110-20466:1:exon
subclass of: SO_0000010

position:20110:1
position: 20110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20466:1
position: 20466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20110-20466:1:exon

L2Y54_RS21665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21665
old locus tag: L2Y54_21665
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKPTIHRLLSFLLACVLLAQTAVGVAGWHVDFPLVAHEHQSLHCATLEQHHATHHAGEQDSVGEHHHQCCHTPASNVAVPMNTLLVPQAETAALLPLFSAEAYRNPHADLLIRPPIA
SIO_010081: L2Y54_RS21665
subclass of: SO_0000673
so part of: L2Y54_RS21665
location: 20110..20466
location: region:20110-20466:1
so has part: feature:20110-20466:1:exon

WP_236502146.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20110-20466:1:exon