Thiothrix winogradskyi strain CT3 plasmid pThCT3_1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
Two New Species of Filamentous Sulfur Bacteria of the Genus Thiothrix, Thiothrix winogradskyi sp. nov. and 'Candidatus Thiothrix sulfatifontis' sp. nov
Erratum:[Microorganisms. 2022 Aug 18;10(8):. PMID: 36014104] Publication Status: Online-Only
Submitted (18-JAN-2022) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP091245.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 136.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/14/2022 07:39:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,345\nCDSs (total) :: 4,274\nGenes (coding) :: 4,213\nCDSs (with protein) :: 4,213\nGenes (RNA) :: 71\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 27 of 61\nPseudo Genes (incomplete) :: 35 of 61\nPseudo Genes (internal stop) :: 2 of 61\nPseudo Genes (multiple problems) :: 3 of 61\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013106013.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013106014.1
ribbon-helix-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_002706498.1
COORDINATES: similar to AA sequence:RefSeq:WP_002706484.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004629956.1
COORDINATES: similar to AA sequence:RefSeq:WP_002353197.1
COORDINATES: similar to AA sequence:RefSeq:WP_002706519.1
COORDINATES: similar to AA sequence:RefSeq:WP_003467280.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197458.1
COORDINATES: similar to AA sequence:RefSeq:WP_018114407.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558195.1
type II toxin-antitoxin system RelE/ParE family toxin