Thiothrix winogradskyi strain CT3 plasmid pThCT3_1, complete sequence.
type: Entry
definition: Thiothrix winogradskyi strain CT3 plasmid pThCT3_1, complete sequence.
sequence version: NZ_CP091245.1
sequence date: 2022-09-15
sequence: sequence
division: CON
label: NZ_CP091245.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN24969931
keyword: RefSeq
source: Thiothrix winogradskyi
organism: Thiothrix winogradskyi
taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.
reference: 1
references: 35889019
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP091245.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 136.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/14/2022 07:39:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,345\nCDSs (total) :: 4,274\nGenes (coding) :: 4,213\nCDSs (with protein) :: 4,213\nGenes (RNA) :: 71\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 4\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 27 of 61\nPseudo Genes (incomplete) :: 35 of 61\nPseudo Genes (internal stop) :: 2 of 61\nPseudo Genes (multiple problems) :: 3 of 61\nCRISPR Arrays :: 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 15872
topology: circular
so has quality: SO_0000988
location: 1..15872
location: region:1-15872:1
RO_0002162: 96472

NZ_CP091245
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN24969931
type: BioSample
SIO_000068: biosample

1
title: Two New Species of Filamentous Sulfur Bacteria of the Genus Thiothrix, Thiothrix winogradskyi sp. nov. and 'Candidatus Thiothrix sulfatifontis' sp. nov
author: Ravin, N.V.
author: Rossetti, S.
author: Beletsky, A.V.
author: Kadnikov, V.V.
author: Rudenko, T.S.
author: Smolyakov, D.D.
author: Moskvitina, M.I.
author: Gureeva, M.V.
author: Mardanov, A.V.
author: Grabovich, M.Y.
journal: Microorganisms 10 (7), 1300 (2022)
pubmed: 35889019
comments: Erratum:[Microorganisms. 2022 Aug 18;10(8):. PMID: 36014104] Publication Status: Online-Only

35889019
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Ravin, N.V.
author: Rossetti, S.
author: Beletsky, A.V.
author: Kadnikov, V.
author: Rudenko, T.S.
author: Smolyakov, D.
author: Moskvitina, M.I.
author: Gureeva, M.V.
author: Mardanov, A.V.
author: Grabovich, M.Y.
journal: Submitted (18-JAN-2022) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15872:1
position: 15872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15872:1:source
so part of: sequence
organism: Thiothrix winogradskyi
mol type: genomic DNA
strain: CT3
isolation source: DSMZ collection (DSM 12730)
type material: type strain of Thiothrix winogradskyi
plasmid: pThCT3_1

96472
type: Taxonomy
SIO_000068: taxonomy

L2Y54_RS21425
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21425
old locus tag: L2Y54_21425
so part of: sequence
location: join(15869..15872,1..638)
location: region:1-15872:1
so has part: feature:15869-15872:1:exon
so has part: feature:1-638:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:15869-15872:1:exon

position:15869:1
position: 15869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-638:1:exon

position:638:1
position: 638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

L2Y54_RS21425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21425
old locus tag: L2Y54_21425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013106013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILTVGNTKGGVGKTTLAVNIAIARALAGRDVWLVDADRQGTAQMAISIRADAGILPGIACSQYADGPVLRGQVQQQGKKYDDIIIDAGGRDSTALRAALVLSDVLLVPFQPRSYDVWALNDIAALVDEARSVRDGLRVYAVLNCADPGTTSTDNSEAAAAVADVPQFEYLPTPIRRRKAFANAAGQGLAVLELSPKDAKAIEELNHIVSALF
SIO_010081: L2Y54_RS21425
subclass of: SO_0000673
so part of: L2Y54_RS21425
location: join(15869..15872,1..638)
location: region:1-15872:1
so has part: feature:15869-15872:1:exon
so has part: feature:1-638:1:exon

WP_202719283.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15869-15872:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-638:1:exon

L2Y54_RS21430
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21430
old locus tag: L2Y54_21430
so part of: sequence
location: 689..931
location: region:689-931:1
so has part: feature:689-931:1:exon
subclass of: SO_0000010

position:689:1
position: 689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:931:1
position: 931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:689-931:1:exon

L2Y54_RS21430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21430
old locus tag: L2Y54_21430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013106014.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribbon-helix-helix domain-containing protein
translation: MTITKAKPKTTKQEAATADFIAGAPDSGTATKGVKKGNKQQISLTMSPALLAKVDALAEKMGQSRAAVINMAVYRAVELG
SIO_010081: L2Y54_RS21430
subclass of: SO_0000673
so part of: L2Y54_RS21430
location: 689..931
location: region:689-931:1
so has part: feature:689-931:1:exon

WP_236502111.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:689-931:1:exon

L2Y54_RS21435
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21435
old locus tag: L2Y54_21435
so part of: sequence
location: complement(1133..1447)
location: region:1133-1447:-1
so has part: feature:1133-1447:-1:exon
subclass of: SO_0000010

position:1133:-1
position: 1133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1447:-1
position: 1447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1133-1447:-1:exon

L2Y54_RS21435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21435
old locus tag: L2Y54_21435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: DUF4395 domain-containing protein
translation: MKRFAWGIALMVLAISFIIDNLGNGPVGGGFVILIVGGVLTYYGNQYLKRVKQVSAFALEMIREEGKIDAVQIAQRIGVSEVDSRIYIAESQRKGVIPFKAEIV
SIO_010081: L2Y54_RS21435
subclass of: SO_0000673
so part of: L2Y54_RS21435
location: complement(1133..1447)
location: region:1133-1447:-1
so has part: feature:1133-1447:-1:exon

WP_236502113.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1133-1447:-1:exon

L2Y54_RS21440
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21440
old locus tag: L2Y54_21440
so part of: sequence
location: complement(1577..2296)
location: region:1577-2296:-1
so has part: feature:1577-2296:-1:exon
subclass of: SO_0000010

position:1577:-1
position: 1577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2296:-1
position: 2296
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1577-2296:-1:exon

L2Y54_RS21440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21440
old locus tag: L2Y54_21440
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKITTILILIFTLLCSETSFAFTKSIGKGYCQIRHPIETFTSVRTSCESQHVIQQQNGGSDDFNTIWINTVHHDYLDRSKDRPWANDRPWLSLWGDDHLEQAYMMGTYANGYHFMLYNHHGNGMPTLVNWDGASHILYAISSIANYPAKELAYVKYQFSKGSDSQFIDSVIGLAVDFSEVGIGVSYSIIGVLVGTVLNPLDTLSNIVPAILLIMEAVYESITNLIAEILSIVTFGLIG
SIO_010081: L2Y54_RS21440
subclass of: SO_0000673
so part of: L2Y54_RS21440
location: complement(1577..2296)
location: region:1577-2296:-1
so has part: feature:1577-2296:-1:exon

WP_236502115.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1577-2296:-1:exon

L2Y54_RS21445
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21445
old locus tag: L2Y54_21445
so part of: sequence
location: complement(2303..2593)
location: region:2303-2593:-1
so has part: feature:2303-2593:-1:exon
subclass of: SO_0000010

position:2303:-1
position: 2303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2593:-1
position: 2593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2303-2593:-1:exon

L2Y54_RS21445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21445
old locus tag: L2Y54_21445
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKNSVIYNGVSVSEDWPQKINESQLIKIFTFNEKIASRIPYGDESFISDDDDSPCSDCAVLKKQFHVIGCDTEVCPFCQNQVISCDCKIKELGRV
SIO_010081: L2Y54_RS21445
subclass of: SO_0000673
so part of: L2Y54_RS21445
location: complement(2303..2593)
location: region:2303-2593:-1
so has part: feature:2303-2593:-1:exon

WP_236502116.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2303-2593:-1:exon

L2Y54_RS21450
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21450
old locus tag: L2Y54_21450
so part of: sequence
location: complement(2992..3306)
location: region:2992-3306:-1
so has part: feature:2992-3306:-1:exon
subclass of: SO_0000010

position:2992:-1
position: 2992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3306:-1
position: 3306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2992-3306:-1:exon

L2Y54_RS21450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21450
old locus tag: L2Y54_21450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQTHDSNLRPSVRNNKPDSRPSTAPMDKTVSVDQHPTPFPTSGDNFRTLSPLECAAFALAQLYPDNPENLAADYAIALAEFERLQGGEKCTDTVATDAAAGDGT
SIO_010081: L2Y54_RS21450
subclass of: SO_0000673
so part of: L2Y54_RS21450
location: complement(2992..3306)
location: region:2992-3306:-1
so has part: feature:2992-3306:-1:exon

WP_236502117.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2992-3306:-1:exon

L2Y54_RS21455
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21455
old locus tag: L2Y54_21455
so part of: sequence
location: complement(3390..4613)
location: region:3390-4613:-1
so has part: feature:3390-4613:-1:exon
subclass of: SO_0000010

position:3390:-1
position: 3390
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4613:-1
position: 4613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3390-4613:-1:exon

L2Y54_RS21455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21455
old locus tag: L2Y54_21455
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MQNSDKNDNPIFIKKSNDLIEARYRLTLGEQRLVLLLASQIGKDDKDFSFYEIKISSFAEMFDLKTDKSLYEKVEKIADDLLGKKLYLKNDSKNFEGTVWLSYVKYIRGSGTIKVRFDDCLKPYLLQLKHSINGFTQYKLHTVLNFKSSYSIRLYELLKMEVWKAEKAQKNQFEKTFALDEYRQILGVDKKAYPVFADFRRWTIAPPVKEISEQTELNISETKYIKTGRKITGITFIVKIRQADKAQALKLEMEEEPPKEQPHPIIERLISLGFGVETAKQYKTKYGIKRIERNIAYTLAKKQEGVVNDIPSYLNKAIREDMGGGWEVRQQQVIDEKKTANAAENLKNMEAELRELAGEIKSLQHNSKLTNDTALWDQAETLKQKYFTLETLYQSAKQNEEATNPKL
SIO_010081: L2Y54_RS21455
subclass of: SO_0000673
so part of: L2Y54_RS21455
location: complement(3390..4613)
location: region:3390-4613:-1
so has part: feature:3390-4613:-1:exon

WP_236502118.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3390-4613:-1:exon

L2Y54_RS21460
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21460
old locus tag: L2Y54_21460
so part of: sequence
location: complement(5045..5575)
location: region:5045-5575:-1
so has part: feature:5045-5575:-1:exon
subclass of: SO_0000010

position:5045:-1
position: 5045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5575:-1
position: 5575
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5045-5575:-1:exon

L2Y54_RS21460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21460
old locus tag: L2Y54_21460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706498.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MKWINHLAIAGATTALVAPALVPVALLGSTAPDWLEWVLEKLGGRKVKHRGVTHVVLYWAGGLAFALGLWDFHGILAAFAYGGLTHVLADSLTVSGVPFTPNAERRFHLFGGRLRTGNAGEYGIAWGIVGVCFMLAVLFKPGGGSGWYPFFYDWHGLYQSGVVDAKEWKDNRLKFF
SIO_010081: L2Y54_RS21460
subclass of: SO_0000673
so part of: L2Y54_RS21460
location: complement(5045..5575)
location: region:5045-5575:-1
so has part: feature:5045-5575:-1:exon

WP_236502119.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5045-5575:-1:exon

L2Y54_RS21465
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21465
old locus tag: L2Y54_21465
so part of: sequence
location: complement(5572..6555)
location: region:5572-6555:-1
so has part: feature:5572-6555:-1:exon
subclass of: SO_0000010

position:5572:-1
position: 5572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6555:-1
position: 6555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5572-6555:-1:exon

L2Y54_RS21465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21465
old locus tag: L2Y54_21465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTQPTSSCGRSSSPASPLAGGKPPPFWAVLKPLALVAVLLAPISANAETDSDYEATKAETLRLAGITAPAGTEAEDTKVSSDTAPAWWPWKVGSELEKPPAVKPYQIPTMAGDGLDYHDKPAAIVQAPALDADAIFKAVLACYPERSKFDIDVDLRAAIRSSDVLDLQDTATGLGKSYVGIVASMPLYSGKELDREKDREYVRRKDTAKAVADFVTAIAGRNHAVRELALYRSLEARSAVRVKEGITEATEQVGYLEKVASSQDKLIGEEAKIMESRLLLAGMCDPKNAERIGGWLRKVSAVPMEEPLTPNPSPSRGEGRKTAGGEP
SIO_010081: L2Y54_RS21465
subclass of: SO_0000673
so part of: L2Y54_RS21465
location: complement(5572..6555)
location: region:5572-6555:-1
so has part: feature:5572-6555:-1:exon

WP_236502120.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5572-6555:-1:exon

L2Y54_RS21470
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21470
old locus tag: L2Y54_21470
so part of: sequence
location: 7492..8139
location: region:7492-8139:1
so has part: feature:7492-8139:1:exon
subclass of: SO_0000010

position:7492:1
position: 7492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8139:1
position: 8139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7492-8139:1:exon

L2Y54_RS21470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21470
old locus tag: L2Y54_21470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706484.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MANYAYLRVSTDQQDLDNQRHGILEYANQNGITGVQFVEDSVSGKVKWRERRIGDLLLKTMQPGDTVIFAEISRMARSTLQVLEMLEHATTTNFHVHVAKQRMRFDDSMNSKITATVLGLAAEIEREFISMRTKEALAKRKADGMTLGRPKGRAETVKLDAHREEIKRYLAKDISKRAIAKLVDCSKSTLYNWLEREGLNKKKPKAKPKATETTP
SIO_010081: L2Y54_RS21470
subclass of: SO_0000673
so part of: L2Y54_RS21470
location: 7492..8139
location: region:7492-8139:1
so has part: feature:7492-8139:1:exon

WP_236502121.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7492-8139:1:exon

L2Y54_RS21475
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21475
old locus tag: L2Y54_21475
so part of: sequence
location: 8136..8390
location: region:8136-8390:1
so has part: feature:8136-8390:1:exon
subclass of: SO_0000010

position:8136:1
position: 8136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8390:1
position: 8390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8136-8390:1:exon

L2Y54_RS21475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21475
old locus tag: L2Y54_21475
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004629956.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSETQQGYGSLEQQLKALENSVHTITTDPAASHWLKRAVTELWERDVVDALNDLDVLRDLLEAKHQAHVLTLKRMVMSDNGTRH
SIO_010081: L2Y54_RS21475
subclass of: SO_0000673
so part of: L2Y54_RS21475
location: 8136..8390
location: region:8136-8390:1
so has part: feature:8136-8390:1:exon

WP_207249084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8136-8390:1:exon

L2Y54_RS21480
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21480
old locus tag: L2Y54_21480
so part of: sequence
location: 9049..9291
location: region:9049-9291:1
so has part: feature:9049-9291:1:exon
subclass of: SO_0000010

position:9049:1
position: 9049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9291:1
position: 9291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9049-9291:1:exon

L2Y54_RS21480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21480
old locus tag: L2Y54_21480
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLQSVAAYAQAPMLTYAMPIHRYCYRVIVRLRRTRGSAVNGHGYGGFGSWLQRRQPSTMSAGWCCGFLYVPCAASLKVTS
SIO_010081: L2Y54_RS21480
subclass of: SO_0000673
so part of: L2Y54_RS21480
location: 9049..9291
location: region:9049-9291:1
so has part: feature:9049-9291:1:exon

WP_236502089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9049-9291:1:exon

L2Y54_RS21485
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21485
old locus tag: L2Y54_21485
so part of: sequence
location: complement(9299..9853)
location: region:9299-9853:-1
so has part: feature:9299-9853:-1:exon
subclass of: SO_0000010

position:9299:-1
position: 9299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9853:-1
position: 9853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9299-9853:-1:exon

L2Y54_RS21485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21485
old locus tag: L2Y54_21485
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTKSYQDTVVSKVNILYEKYKSNDEEINKNKEKSSSLRLAIQSLTEKLQQPNYINGSDTLAELEAARNIAINMDCESLKQKIEDIEINIKNGNTEQSLDHLETMVLWASLLKTRLEYITSLEVLNGLYQDQKTLKIKFKKLANILEEDILSYETTSTHENGNEVIEPSILIYETISSESNASVH
SIO_010081: L2Y54_RS21485
subclass of: SO_0000673
so part of: L2Y54_RS21485
location: complement(9299..9853)
location: region:9299-9853:-1
so has part: feature:9299-9853:-1:exon

WP_236502091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9299-9853:-1:exon

L2Y54_RS21490
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21490
old locus tag: L2Y54_21490
so part of: sequence
location: complement(9874..10602)
location: region:9874-10602:-1
so has part: feature:9874-10602:-1:exon
subclass of: SO_0000010

position:9874:-1
position: 9874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10602:-1
position: 10602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9874-10602:-1:exon

L2Y54_RS21490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21490
old locus tag: L2Y54_21490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRYLTHHDFMPSVYAMYKKNGKNRKISEKVLSMWAKSQNHNLFGSKEIFTSRQTANGENRIRHCRKYNLSDGCRLITIFNQDTHVFVFLGSHDECDDWIEKNRHISFDKILLGTDNNNIVQNESTLSIHKSNSTILNAPKNIINDFKQNREEIELYAAFIKYDSGISSDTTKDGWKYAKSSFLEKDCIEVKNIINIVAHQINRRRSKDALVLAKNLEDFLTFMSAKLYYINNLGILSNNTFH
SIO_010081: L2Y54_RS21490
subclass of: SO_0000673
so part of: L2Y54_RS21490
location: complement(9874..10602)
location: region:9874-10602:-1
so has part: feature:9874-10602:-1:exon

WP_236502093.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9874-10602:-1:exon

L2Y54_RS21495
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21495
old locus tag: L2Y54_21495
so part of: sequence
location: complement(10724..11383)
location: region:10724-11383:-1
so has part: feature:10724-11383:-1:exon
subclass of: SO_0000010

position:10724:-1
position: 10724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11383:-1
position: 11383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10724-11383:-1:exon

L2Y54_RS21495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21495
old locus tag: L2Y54_21495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDEYNELSSNPIDEASSSLVSQDHNYYGDSEITNQLQCDSKENTSSISVETIDELQVELDATYKTLIDSIVTARQACNKLKERKVNCLKKIEEQKTIINNIREQSESLTLPNEINDSSDDDLDNEISSYKDQVKQKHCARIALYSEKIHHDIDEHHANIPHYINAIREELNIIDAKVQLIEALKKLDSFYREYKIFHYQSDAAEKRFQNALAIFETNKL
SIO_010081: L2Y54_RS21495
subclass of: SO_0000673
so part of: L2Y54_RS21495
location: complement(10724..11383)
location: region:10724-11383:-1
so has part: feature:10724-11383:-1:exon

WP_236502095.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10724-11383:-1:exon

L2Y54_RS21500
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21500
old locus tag: L2Y54_21500
so part of: sequence
location: 11914..12201
location: region:11914-12201:1
so has part: feature:11914-12201:1:exon
subclass of: SO_0000010

position:11914:1
position: 11914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12201:1
position: 12201
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11914-12201:1:exon

L2Y54_RS21500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21500
old locus tag: L2Y54_21500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002353197.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLKDVATIRLDFAAADFWLVRRGSLETIGQPTRTFSPYHIGIRVEQTGLILPDYLYYVFVNFHQIGQWQPLAHGTLELVHIRAEDVRNIALLAV
SIO_010081: L2Y54_RS21500
subclass of: SO_0000673
so part of: L2Y54_RS21500
location: 11914..12201
location: region:11914-12201:1
so has part: feature:11914-12201:1:exon

WP_236502097.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11914-12201:1:exon

L2Y54_RS21505
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21505
old locus tag: L2Y54_21505
so part of: sequence
location: 12246..12656
location: region:12246-12656:1
so has part: feature:12246-12656:1:exon
subclass of: SO_0000010

position:12246:1
position: 12246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12656:1
position: 12656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12246-12656:1:exon

L2Y54_RS21505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21505
old locus tag: L2Y54_21505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002706519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIKIPSIEAQKRFIFEQGTKEAIRQLEQNLTAPVVQDLAIDETQYSTEHLLPEGRWKPPHPDIANAYIEQFKRHSPYQTDKALAEWLGMRGNNAERRIRAYRDGSDSPPYGVWRKLLVASGRVPQEIIPVIAFMR
SIO_010081: L2Y54_RS21505
subclass of: SO_0000673
so part of: L2Y54_RS21505
location: 12246..12656
location: region:12246-12656:1
so has part: feature:12246-12656:1:exon

WP_236502099.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12246-12656:1:exon

L2Y54_RS21510
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21510
old locus tag: L2Y54_21510
so part of: sequence
location: 12873..13178
location: region:12873-13178:1
so has part: feature:12873-13178:1:exon
subclass of: SO_0000010

position:12873:1
position: 12873
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13178:1
position: 13178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12873-13178:1:exon

L2Y54_RS21510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21510
old locus tag: L2Y54_21510
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDTSQFQDRYHIRFRGRRTTVTLDKILSELIAMSFGLTPDRTDYHSTVQQWLQATLTDKLGENVPGGSHISQYARKYAIEEIARRELVEQLWDWRIGTNG
SIO_010081: L2Y54_RS21510
subclass of: SO_0000673
so part of: L2Y54_RS21510
location: 12873..13178
location: region:12873-13178:1
so has part: feature:12873-13178:1:exon

WP_236502101.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12873-13178:1:exon

L2Y54_RS21515
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21515
old locus tag: L2Y54_21515
so part of: sequence
location: complement(13201..14184)
location: region:13201-14184:-1
so has part: feature:13201-14184:-1:exon
subclass of: SO_0000010

position:13201:-1
position: 13201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14184:-1
position: 14184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13201-14184:-1:exon

L2Y54_RS21515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21515
old locus tag: L2Y54_21515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003467280.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease
translation: MSRLSSKQLFLKILQAVDNSGWQALVLDATKPFQLRLFQSDEKGFDIRAYIWNCTHGGGSARASNEYRVQLTGVVPSSIPGQITLLLGWHDGYGVFVGFDIRRHEGQASNSPSIQIKEETLQNAHTHAFAIHHRQNGEIAVAFRPEFLVEYALNAASLHESGEAAADMSLLNTVDTLQEDTIITITNQERQTVVSQIARKFRASDFRRRVLGAYGHRCAVCGVQLELIDAAHIIPVAATTSTDETRNGIALCKLHHAAYDRNLISFNERYRIEVNREEVSRLTSANRVQGLEKFREHLLSAILLPNDRRDYPPPEIITEARRVRRWA
SIO_010081: L2Y54_RS21515
subclass of: SO_0000673
so part of: L2Y54_RS21515
location: complement(13201..14184)
location: region:13201-14184:-1
so has part: feature:13201-14184:-1:exon

WP_236502103.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13201-14184:-1:exon

L2Y54_RS21520
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21520
old locus tag: L2Y54_21520
so part of: sequence
location: complement(14165..15118)
location: region:14165-15118:-1
so has part: feature:14165-15118:-1:exon
subclass of: SO_0000010

position:14165:-1
position: 14165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15118:-1
position: 15118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14165-15118:-1:exon

L2Y54_RS21520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21520
old locus tag: L2Y54_21520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006197458.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
translation: MKSQPSKLLYQTALGQAYLGDTLEFLPSIADESIDLILTSPPFALKRKKEYGNEDEDKYVDWFMGFASQLHRILKPEGSFVLDLGGAYMPGFPVRSIYMFELLVRLVKEAGFYLAQEFYHYNPARLPAPAEWVNVRRIRVKDSVNVVWWLSKSKNPKADNRKVLKPYSDSMKKLLKDGYKAKLRPSGHDISDKFSRNNGGAIPPNLLELANTDSNSSYQKQCREAGLKVHPARFPAGFAEFFIKFLTDEGDLVFDPFAGSNTTGKVAEDLSRKWMASELSEEYLKGSLFRFDNPILSTQSPIKTTSLKGSPYVSPQF
SIO_010081: L2Y54_RS21520
subclass of: SO_0000673
so part of: L2Y54_RS21520
location: complement(14165..15118)
location: region:14165-15118:-1
so has part: feature:14165-15118:-1:exon

WP_236502105.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14165-15118:-1:exon

L2Y54_RS21525
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21525
old locus tag: L2Y54_21525
so part of: sequence
location: 15195..15488
location: region:15195-15488:1
so has part: feature:15195-15488:1:exon
subclass of: SO_0000010

position:15195:1
position: 15195
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15488:1
position: 15488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15195-15488:1:exon

L2Y54_RS21525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21525
old locus tag: L2Y54_21525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018114407.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MSQVVSIAPTSIKLDVDTKTRLQRLATSRQRSTHWLMQEAIRQYLEREEQLAQFRDEMQTAWDDYQDTGLHVTGKEVFAWMETWFTDSEAQPPKCHH
SIO_010081: L2Y54_RS21525
subclass of: SO_0000673
so part of: L2Y54_RS21525
location: 15195..15488
location: region:15195-15488:1
so has part: feature:15195-15488:1:exon

WP_236502107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15195-15488:1:exon

L2Y54_RS21530
type: Gene
subclass of: SO_0000704
RO_0002162: 96472
locus tag: L2Y54_RS21530
old locus tag: L2Y54_21530
so part of: sequence
location: 15476..15778
location: region:15476-15778:1
so has part: feature:15476-15778:1:exon
subclass of: SO_0000010

position:15476:1
position: 15476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15778:1
position: 15778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15476-15778:1:exon

L2Y54_RS21530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 96472
locus tag: L2Y54_RS21530
old locus tag: L2Y54_21530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016558195.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPSLIFSHTALLDLERLRAFLRAKNRPAARRAVVKIMQGLQALEQHPELGHTVEDRPEDYRELVIPFGKDGYIAAYRYAGDSLVVLGVRHQRELQPPTLP
SIO_010081: L2Y54_RS21530
subclass of: SO_0000673
so part of: L2Y54_RS21530
location: 15476..15778
location: region:15476-15778:1
so has part: feature:15476-15778:1:exon

WP_236502109.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15476-15778:1:exon