Cupriavidus oxalaticus strain T2 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.
Complete genome sequence of Cupriavidus oxalaticus T2, a bacterium capable of phenol tolerance and degradation
Submitted (24-SEP-2018) School of Biology and Biological Engineering, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou 510006, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP032520.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 120.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:41:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,647\nCDSs (total) :: 6,559\nGenes (coding) :: 6,454\nCDSs (with protein) :: 6,454\nGenes (RNA) :: 88\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 4\nPseudo Genes (total) :: 105\nCDSs (without protein) :: 105\nPseudo Genes (ambiguous residues) :: 0 of 105\nPseudo Genes (frameshifted) :: 32 of 105\nPseudo Genes (incomplete) :: 85 of 105\nPseudo Genes (internal stop) :: 11 of 105\nPseudo Genes (multiple problems) :: 19 of 105\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_020071394.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004299248.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:YP_005229638.1
mercury resistance transcriptional regulator MerR
COORDINATES: similar to AA sequence:RefSeq:YP_005229639.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229640.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_013722692.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001277466.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003132004.1
COORDINATES: similar to AA sequence:RefSeq:WP_003132006.1
COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011514819.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004635340.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635344.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011229348.1
heavy metal homeostasis two-component system response regulator CzcR
COORDINATES: similar to AA sequence:RefSeq:WP_011229349.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514820.1
COORDINATES: similar to AA sequence:RefSeq:WP_008646716.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229350.1
COORDINATES: similar to AA sequence:RefSeq:WP_008650726.1
GO:0009429 - bacterial-type flagellum basal body, proximal rod [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011514822.1
COORDINATES: protein motif:HMM:NF024183.2
COORDINATES: similar to AA sequence:RefSeq:WP_008650723.1
COORDINATES: similar to AA sequence:RefSeq:WP_008650722.1
COORDINATES: similar to AA sequence:RefSeq:WP_008650720.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013236351.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020797664.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152391.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020206812.1
GO:0008253 - 5'-nucleotidase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009117 - nucleotide metabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009208657.1
COORDINATES: similar to AA sequence:RefSeq:WP_018311790.1
COORDINATES: similar to AA sequence:RefSeq:WP_008651043.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354474.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354475.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203556.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: protein motif:HMM:NF025569.2
COORDINATES: similar to AA sequence:RefSeq:WP_007962628.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018314983.1
COORDINATES: similar to AA sequence:RefSeq:WP_001107539.1
COORDINATES: similar to AA sequence:RefSeq:WP_017138403.1
COORDINATES: similar to AA sequence:RefSeq:WP_005448102.1
COORDINATES: similar to AA sequence:RefSeq:WP_013206815.1
COORDINATES: similar to AA sequence:RefSeq:WP_018008558.1
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020653921.1
COORDINATES: protein motif:HMM:NF027890.2
efflux RND transporter periplasmic adaptor subunit
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018310027.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011829993.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009397193.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011001785.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008648467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011001783.1
COORDINATES: similar to AA sequence:RefSeq:WP_011001782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315126.1
COORDINATES: similar to AA sequence:RefSeq:WP_018315127.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001567368.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014005992.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213304.1
COORDINATES: similar to AA sequence:RefSeq:WP_003274555.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958806.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015600544.1
COORDINATES: similar to AA sequence:RefSeq:WP_012537175.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013958722.1
COORDINATES: similar to AA sequence:RefSeq:WP_011154327.1
COORDINATES: similar to AA sequence:RefSeq:WP_009277588.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798328.1
COORDINATES: similar to AA sequence:RefSeq:WP_017509747.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798326.1
COORDINATES: similar to AA sequence:RefSeq:WP_014439252.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094202.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094201.1
COORDINATES: similar to AA sequence:RefSeq:WP_011547971.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333020.1
COORDINATES: protein motif:HMM:NF022633.2
COORDINATES: similar to AA sequence:RefSeq:WP_011875876.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_004713998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699591.1
COORDINATES: similar to AA sequence:RefSeq:WP_004627190.1
COORDINATES: protein motif:HMM:NF012354.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012435767.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013951740.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615879.1
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF027788.2
COORDINATES: protein motif:HMM:NF016062.2
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012806084.1
GO:0030234 - enzyme regulator activity [Evidence IEA]
GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011288355.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012806081.1
COORDINATES: similar to AA sequence:RefSeq:WP_011288357.1
COORDINATES: similar to AA sequence:RefSeq:WP_013722709.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229394.1
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: similar to AA sequence:RefSeq:WP_008650708.1
COORDINATES: similar to AA sequence:RefSeq:WP_012356266.1
bifunctional UDP-4-keto-pentose/UDP-xylose synthase
COORDINATES: similar to AA sequence:RefSeq:WP_008646721.1
COORDINATES: similar to AA sequence:RefSeq:WP_008646723.1
heavy metal response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012354843.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020918.2
COORDINATES: similar to AA sequence:RefSeq:WP_018009026.1
COORDINATES: protein motif:HMM:NF025045.2
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013951742.1
COORDINATES: protein motif:HMM:NF024793.2
helix-turn-helix domain containing protein
COORDINATES: protein motif:HMM:NF037054.2
COORDINATES: protein motif:HMM:NF024511.2
COORDINATES: similar to AA sequence:RefSeq:WP_018055126.1
COORDINATES: similar to AA sequence:RefSeq:WP_013105981.1
COORDINATES: protein motif:HMM:NF020123.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010464055.1
COORDINATES: similar to AA sequence:RefSeq:WP_008876319.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014890429.1
COORDINATES: similar to AA sequence:RefSeq:WP_004630095.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749797.1
COORDINATES: similar to AA sequence:RefSeq:WP_012436537.1
COORDINATES: protein motif:HMM:NF023168.2
COORDINATES: similar to AA sequence:RefSeq:WP_006751146.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201311.1
COORDINATES: similar to AA sequence:RefSeq:WP_019447873.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011544732.1
COORDINATES: similar to AA sequence:RefSeq:WP_013844459.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020201290.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354821.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558362.1
COORDINATES: protein motif:HMM:NF024258.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009523688.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006159542.1
COORDINATES: protein motif:HMM:NF024921.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018006843.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_012435602.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354471.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018006584.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013954372.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354509.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435763.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959285.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954375.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954376.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013954377.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954378.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354515.1
COORDINATES: similar to AA sequence:RefSeq:WP_005304583.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354517.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514882.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354519.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003801.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004032.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239955.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004035.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239952.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239951.1
COORDINATES: similar to AA sequence:RefSeq:WP_013954392.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645385.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645386.1
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018004042.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004043.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004044.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239944.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514885.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645397.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645398.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645403.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008645405.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354522.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354526.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201349.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004055.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239937.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008645414.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354530.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354532.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648656.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648655.1
COORDINATES: similar to AA sequence:RefSeq:WP_008648653.1
COORDINATES: similar to AA sequence:RefSeq:WP_011299519.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700007.1
COORDINATES: similar to AA sequence:RefSeq:WP_008343135.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649399.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011514906.1
GO:0003896 - DNA primase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
primase-helicase zinc-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011154247.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649407.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354549.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354550.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: similar to AA sequence:RefSeq:WP_012354552.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242043.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_018314034.1
COORDINATES: similar to AA sequence:RefSeq:WP_018314033.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435637.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354559.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354560.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354561.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012354562.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354563.1
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354564.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354565.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_008649449.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354567.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649451.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354569.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354571.1
COORDINATES: similar to AA sequence:RefSeq:WP_008645668.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354573.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354574.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008649463.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354577.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_012354578.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354580.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354581.1
COORDINATES: similar to AA sequence:RefSeq:WP_020203523.1
COORDINATES: protein motif:HMM:NF025107.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_018310260.1
COORDINATES: similar to AA sequence:RefSeq:WP_007182612.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071131.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_008646384.1
COORDINATES: similar to AA sequence:RefSeq:WP_012356645.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012356644.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009207749.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009207750.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354822.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637351.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020066164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012405859.1
COORDINATES: similar to AA sequence:RefSeq:WP_006046921.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312598.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338222.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009240915.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338224.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583891.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008651452.1
COORDINATES: similar to AA sequence:RefSeq:WP_003817323.1
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007735937.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012870.2
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013959085.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011153965.1
COORDINATES: similar to AA sequence:RefSeq:WP_010465804.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354861.1
COORDINATES: protein motif:HMM:NF015366.2
COORDINATES: similar to AA sequence:RefSeq:WP_011810662.1
COORDINATES: similar to AA sequence:RefSeq:WP_006223316.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011299992.1
COORDINATES: similar to AA sequence:RefSeq:WP_013392374.1
COORDINATES: similar to AA sequence:RefSeq:WP_013394505.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016348312.1
COORDINATES: similar to AA sequence:RefSeq:WP_008059939.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517104.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008060919.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517101.1
COORDINATES: similar to AA sequence:RefSeq:WP_013956482.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006160.1
COORDINATES: similar to AA sequence:RefSeq:WP_011810663.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517103.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959567.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616558.1
COORDINATES: similar to AA sequence:RefSeq:WP_011810664.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011490625.1
COORDINATES: similar to AA sequence:RefSeq:WP_011517109.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013959549.1
COORDINATES: similar to AA sequence:RefSeq:WP_019701037.1
COORDINATES: similar to AA sequence:RefSeq:WP_018312181.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616549.1
crotonase/enoyl-CoA hydratase family protein
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007181179.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_013090858.1
COORDINATES: protein motif:HMM:TIGR01554.2
GO:0044423 - virion component [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003814685.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013396394.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959546.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017450452.1
COORDINATES: similar to AA sequence:RefSeq:WP_016738046.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030955 - potassium ion binding [Evidence IEA]; GO:0004743 - pyruvate kinase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013959647.1
COORDINATES: similar to AA sequence:RefSeq:WP_001063816.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013209982.1
COORDINATES: similar to AA sequence:RefSeq:WP_011658302.1
COORDINATES: similar to AA sequence:RefSeq:WP_005794976.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018904834.1
COORDINATES: similar to AA sequence:RefSeq:WP_020204024.1
COORDINATES: similar to AA sequence:RefSeq:WP_007884687.1
COORDINATES: similar to AA sequence:RefSeq:WP_014898495.1
COORDINATES: similar to AA sequence:RefSeq:WP_011296007.1
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_018004415.1
COORDINATES: similar to AA sequence:RefSeq:WP_010812752.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010812751.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006396972.1
COORDINATES: similar to AA sequence:RefSeq:WP_018311889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959143.1
COORDINATES: similar to AA sequence:RefSeq:WP_004637366.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004525.1
Tn3 family transposase post-transcriptional regulator TnpC
COORDINATES: similar to AA sequence:RefSeq:WP_018309366.1
COORDINATES: protein motif:HMM:NF028296.2
COORDINATES: similar to AA sequence:RefSeq:WP_009241670.1
COORDINATES: similar to AA sequence:RefSeq:WP_013957067.1
COORDINATES: similar to AA sequence:RefSeq:WP_009241668.1
COORDINATES: similar to AA sequence:RefSeq:WP_009240723.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519443.1
COORDINATES: similar to AA sequence:RefSeq:WP_009240721.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012435808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435806.1
COORDINATES: similar to AA sequence:RefSeq:WP_009241662.1
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_003131927.1
COORDINATES: similar to AA sequence:RefSeq:WP_014705853.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009241659.1
COORDINATES: similar to AA sequence:RefSeq:WP_015597149.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008952748.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615226.1
COORDINATES: protein motif:HMM:NF024565.2
COORDINATES: protein motif:HMM:NF019313.2
COORDINATES: similar to AA sequence:RefSeq:WP_010461383.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012354459.1
COORDINATES: similar to AA sequence:RefSeq:WP_004552447.1
COORDINATES: similar to AA sequence:RefSeq:WP_005015689.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017685527.1
COORDINATES: similar to AA sequence:RefSeq:WP_009966554.1
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_011616883.1
COORDINATES: similar to AA sequence:RefSeq:WP_012355574.1
COORDINATES: similar to AA sequence:RefSeq:WP_011616881.1
COORDINATES: similar to AA sequence:RefSeq:WP_018004846.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006225.1
COORDINATES: similar to AA sequence:RefSeq:WP_019197987.1
COORDINATES: similar to AA sequence:RefSeq:WP_019466158.1
COORDINATES: similar to AA sequence:RefSeq:WP_007739926.1
COORDINATES: similar to AA sequence:RefSeq:WP_003273690.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435813.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635224.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635223.1
COORDINATES: similar to AA sequence:RefSeq:WP_008642716.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635218.1
COORDINATES: similar to AA sequence:RefSeq:WP_009241653.1
COORDINATES: similar to AA sequence:RefSeq:WP_009241649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008652083.1
COORDINATES: similar to AA sequence:RefSeq:WP_004255639.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
phosphoethanolamine--lipid A transferase
COORDINATES: similar to AA sequence:RefSeq:WP_004255641.1
COORDINATES: similar to AA sequence:RefSeq:WP_009241683.1
COORDINATES: similar to AA sequence:RefSeq:WP_004158536.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229398.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229399.1
COORDINATES: similar to AA sequence:RefSeq:WP_008652088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012433354.1
COORDINATES: similar to AA sequence:RefSeq:WP_009522628.1
COORDINATES: similar to AA sequence:RefSeq:WP_008652092.1
GO:0006825 - copper ion transport [Evidence IEA]
copper homeostasis membrane protein CopD
COORDINATES: similar to AA sequence:RefSeq:WP_008652096.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
copper homeostasis periplasmic binding protein CopC
COORDINATES: similar to AA sequence:RefSeq:WP_011229402.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011229403.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_008647673.1
COORDINATES: similar to AA sequence:RefSeq:WP_012444031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011516367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008652571.1
GO:0046872 - metal ion binding [Evidence IEA]
periplasmic Cu(I)/Cu(II)-binding protein CopK
COORDINATES: similar to AA sequence:RefSeq:WP_004635281.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251418.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435770.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: similar to AA sequence:RefSeq:WP_011565675.1
COORDINATES: similar to AA sequence:RefSeq:WP_015447607.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008642752.1
COORDINATES: similar to AA sequence:RefSeq:WP_007730065.1
COORDINATES: similar to AA sequence:RefSeq:WP_019704705.1
COORDINATES: similar to AA sequence:RefSeq:WP_012435721.1
GO:0033573 - high-affinity iron permease complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0005381 - iron ion transmembrane transporter activity [Evidence IEA]
GO:0034755 - iron ion transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_019816994.1
COORDINATES: similar to AA sequence:RefSeq:WP_015913616.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003062514.1
COORDINATES: similar to AA sequence:RefSeq:WP_016451581.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_018991621.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611812.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISRme15 family transposase
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011615469.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354611.1
COORDINATES: protein motif:HMM:NF013304.2
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: similar to AA sequence:RefSeq:WP_008645747.1
COORDINATES: similar to AA sequence:RefSeq:WP_006027316.1
COORDINATES: similar to AA sequence:RefSeq:WP_011239980.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635320.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635326.1
COORDINATES: similar to AA sequence:RefSeq:WP_004635327.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229344.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229345.1
CDF family cobalt-zinc-cadmium transporter CzcI
COORDINATES: protein motif:HMM:NF012739.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]