Canis lupus familiaris isolate Mischka breed German Shepherd chromosome 34, alternate assembly UU_Cfam_GSD_1.0, whole genome shotgun sequence.
type: Entry
definition: Canis lupus familiaris isolate Mischka breed German Shepherd chromosome 34, alternate assembly UU_Cfam_GSD_1.0, whole genome shotgun sequence.
sequence version: NC_049255.1
sequence date: 2021-01-08
sequence: sequence
division: CON
label: NC_049255.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA643630
dblink: SAMN13230619
keyword: WGS
keyword: RefSeq
source: Canis lupus familiaris (dog)
organism: Canis lupus familiaris
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM021995.1.\nAssembly name: UU_Cfam_GSD_1.0\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Uppsala University on\n2020/03/10. The original whole-genome shotgun project has the\naccession JAAHUQ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Uppsala University\nAssembly Date :: JUN-2019\nAssembly Method :: FALCON v. 0.5.0\nAssembly Name :: UU_Cfam_GSD_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio Sequel; Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Canis lupus familiaris Annotation\n Release 106\nAnnotation Version :: 106\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 42397973
topology: linear
so has quality: SO_0000987
location: 1..42397973
location: region:1-42397973:1
RO_0002162: 9615

NC_049255
type: RefSeq
SIO_000068: refseq

PRJNA643630
type: BioProject
SIO_000068: bioproject

SAMN13230619
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42397973:1
position: 42397973
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-42397973:1:source
so part of: sequence
organism: Canis lupus familiaris
mol type: genomic DNA
isolate: Mischka
sub species: familiaris
chromosome: 34
sex: female
tissue type: blood
breed: German Shepherd

9615
type: Taxonomy
SIO_000068: taxonomy

LOC478608
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC478608
note: cathepsin C pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
pseudo: true
so part of: sequence
location: 274833..276497
location: region:274833-276497:1
so has part: feature:274833-276497:1:exon

478608
type: Gene
SIO_000068: ncbigene

position:274833:1
position: 274833
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:276497:1
position: 276497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:274833-276497:1:exon

LOC478608
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC478608
note: Derived by automated computational analysis using gene prediction method: Curated Genomic.
pseudo: true
SIO_010081: LOC478608
subclass of: SO_0000673
so part of: LOC478608
location: 274833..276497
location: region:274833-276497:1
so has part: feature:274833-276497:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:274833-276497:1:exon

OTULIN
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(284839..324953)
location: region:284839-324953:-1
so has part: feature:284839-324953:-1:exon
subclass of: SO_0000010

606770
type: Gene
SIO_000068: ncbigene

position:284839:-1
position: 284839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324953:-1
position: 324953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284839-324953:-1:exon

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_038583295.1
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(284839..288349,290582..290851,293402..293527,313045..313139,317126..317202,324785..324953))
location: region:284839-324953:-1
so has part: feature:324785-324953:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313139:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:284839-288349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324953:-1:exon

position:324785:-1
position: 324785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

position:317126:-1
position: 317126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:317202:-1
position: 317202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313139:-1:exon

position:313045:-1
position: 313045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313139:-1
position: 313139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:293402-293527:-1:exon

position:293402:-1
position: 293402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293527:-1
position: 293527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:290582-290851:-1:exon

position:290582:-1
position: 290582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290851:-1
position: 290851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:284839-288349:-1:exon

position:288349:-1
position: 288349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583292.1
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(284839..288349,290582..290851,293402..293527,309092..309235,313045..313139,317126..317202,324785..324953))
location: region:284839-324953:-1
so has part: feature:324785-324953:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313139:-1:exon
so has part: feature:309092-309235:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:284839-288349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324953:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313139:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:309092-309235:-1:exon

position:309092:-1
position: 309092
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:309235:-1
position: 309235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:284839-288349:-1:exon

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_038583294.1
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(284839..288349,290582..290851,293402..293527,313045..313142,317126..317202,324785..324953))
location: region:284839-324953:-1
so has part: feature:324785-324953:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313142:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:284839-288349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324953:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313142:-1:exon

position:313142:-1
position: 313142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:284839-288349:-1:exon

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_038583293.1
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(284839..288349,290582..290851,309092..309235,313045..313142,317126..317202,324785..324953))
location: region:284839-324953:-1
so has part: feature:324785-324953:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313142:-1:exon
so has part: feature:309092-309235:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:284839-288349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324953:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313142:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:309092-309235:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:284839-288349:-1:exon

OTULIN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULIN
product: OTU deubiquitinase with linear linkage specificity, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583291.1
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(284839..288349,290582..290851,293402..293527,309092..309235,313045..313142,317126..317202,324785..324953))
location: region:284839-324953:-1
so has part: feature:324785-324953:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313142:-1:exon
so has part: feature:309092-309235:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:284839-288349:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324953:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313142:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:309092-309235:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:284839-288349:-1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X5
translation: MSRGAMPQPGAWPGAGCAEKSAREAGAAPREGGKAAAGGQPRTAVRCPAEHEEDMYRDADEIEKEKELLTHERELSEARLSVAPEMDIMDYCKKEWRGNTQKATCMKKLPEKLISKYNWIKQWKLGLKFKGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQVACDELFMNEEEEYSLYEAIKFLMLNRAIELYDDKENGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITVYPTDPPMDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(288155..288349,290582..290851,293402..293527,313045..313139,317126..317202,324785..324936))
location: region:288155-324936:-1
so has part: feature:324785-324936:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313139:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:288155-288349:-1:exon

XP_038439223.1
type: Protein
SIO_000068: ncbiprotein

position:288155:-1
position: 288155
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324936:-1
position: 324936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324936:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313139:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:288155-288349:-1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X2
translation: MSRGAMPQPGAWPGAGCAEKSAREAGAAPREGGKAAAGGQPRTAVRCPAEHEEDMYRDADEIEKEKELLTHERELSEARLSVAPEMDIMDYCKKEWRGNTQKATCMKKGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQPAALPSWLQDPELTLLPEKLISKYNWIKQWKLGLKFKGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQVACDELFMNEEEEYSLYEAIKFLMLNRAIELYDDKENGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITVYPTDPPMDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(288155..288349,290582..290851,293402..293527,309092..309235,313045..313139,317126..317202,324785..324936))
location: region:288155-324936:-1
so has part: feature:324785-324936:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313139:-1:exon
so has part: feature:309092-309235:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:288155-288349:-1:exon

XP_038439220.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324936:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313139:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:309092-309235:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:288155-288349:-1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X4
translation: MSRGAMPQPGAWPGAGCAEKSAREAGAAPREGGKAAAGGQPRTAVRCPAEHEEDMYRDADEIEKEKELLTHERELSAEARLSVAPEMDIMDYCKKEWRGNTQKATCMKKLPEKLISKYNWIKQWKLGLKFKGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQVACDELFMNEEEEYSLYEAIKFLMLNRAIELYDDKENGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITVYPTDPPMDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(288155..288349,290582..290851,293402..293527,313045..313142,317126..317202,324785..324936))
location: region:288155-324936:-1
so has part: feature:324785-324936:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313142:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:288155-288349:-1:exon

XP_038439222.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324936:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313142:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:288155-288349:-1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X3
translation: MSRGAMPQPGAWPGAGCAEKSAREAGAAPREGGKAAAGGQPRTAVRCPAEHEEDMYRDADEIEKEKELLTHERELSAEARLSVAPEMDIMDYCKKEWRGNTQKATCMKKGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQPAALPSWLQDPELTLWAGLAEMRTAEARQVACDELFMNEEEEYSLYEAIKFLMLNRAIELYDDKENGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITVYPTDPPMDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(288155..288349,290582..290851,309092..309235,313045..313142,317126..317202,324785..324936))
location: region:288155-324936:-1
so has part: feature:324785-324936:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313142:-1:exon
so has part: feature:309092-309235:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:288155-288349:-1:exon

XP_038439221.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324936:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313142:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:309092-309235:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:288155-288349:-1:exon

OTULIN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULIN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin thioesterase otulin isoform X1
translation: MSRGAMPQPGAWPGAGCAEKSAREAGAAPREGGKAAAGGQPRTAVRCPAEHEEDMYRDADEIEKEKELLTHERELSAEARLSVAPEMDIMDYCKKEWRGNTQKATCMKKGYEEVSQKFTSIRRVRGDNYCALRATLFQAMSQPAALPSWLQDPELTLLPEKLISKYNWIKQWKLGLKFKGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEARQVACDELFMNEEEEYSLYEAIKFLMLNRAIELYDDKENGKEVPFFSVLLFARDTSNDPGQLLRNHLNQVGHTGGLEQVEMFLLAYAVRHTIQVYRLSKYSTEEFITVYPTDPPMDWPVVTLIAEDDRHYNIPVRVCEETSL
SIO_010081: OTULIN
subclass of: SO_0000673
so part of: OTULIN
location: complement(join(288155..288349,290582..290851,293402..293527,309092..309235,313045..313142,317126..317202,324785..324936))
location: region:288155-324936:-1
so has part: feature:324785-324936:-1:exon
so has part: feature:317126-317202:-1:exon
so has part: feature:313045-313142:-1:exon
so has part: feature:309092-309235:-1:exon
so has part: feature:293402-293527:-1:exon
so has part: feature:290582-290851:-1:exon
so has part: feature:288155-288349:-1:exon

XP_038439219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:324785-324936:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:317126-317202:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:313045-313142:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:309092-309235:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:293402-293527:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:290582-290851:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:288155-288349:-1:exon

LOC119867552
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867552
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(358828..358931)
location: region:358828-358931:-1
so has part: feature:358828-358931:-1:exon
subclass of: SO_0000623

119867552
type: Gene
SIO_000068: ncbigene

position:358828:-1
position: 358828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:358931:-1
position: 358931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:358828-358931:-1:exon

LOC119867552
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: snRNA
gene: LOC119867552
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005384070.1
SIO_010081: LOC119867552
subclass of: SO_0000673
so part of: LOC119867552
location: complement(358828..358931)
location: region:358828-358931:-1
so has part: feature:358828-358931:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:358828-358931:-1:exon

OTULINL
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: OTULINL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(367293..393840)
location: region:367293-393840:-1
so has part: feature:367293-393840:-1:exon
subclass of: SO_0000010

606782
type: Gene
SIO_000068: ncbigene

position:367293:-1
position: 367293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393840:-1
position: 393840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:367293-393840:-1:exon

OTULINL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULINL
product: OTU deubiquitinase with linear linkage specificity like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
transcript id: XM_038583297.1
SIO_010081: OTULINL
subclass of: SO_0000673
so part of: OTULINL
location: complement(join(367293..369037,370725..370994,371904..372032,374017..374166,374925..375016,375117..375148,375238..375397,393756..393840))
location: region:367293-393840:-1
so has part: feature:393756-393840:-1:exon
so has part: feature:375238-375397:-1:exon
so has part: feature:375117-375148:-1:exon
so has part: feature:374925-375016:-1:exon
so has part: feature:374017-374166:-1:exon
so has part: feature:371904-372032:-1:exon
so has part: feature:370725-370994:-1:exon
so has part: feature:367293-369037:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:393756-393840:-1:exon

position:393756:-1
position: 393756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:375238-375397:-1:exon

position:375238:-1
position: 375238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375397:-1
position: 375397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:375117-375148:-1:exon

position:375117:-1
position: 375117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375148:-1
position: 375148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:374925-375016:-1:exon

position:374925:-1
position: 374925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375016:-1
position: 375016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:374017-374166:-1:exon

position:374017:-1
position: 374017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:374166:-1
position: 374166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:371904-372032:-1:exon

position:371904:-1
position: 371904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:372032:-1
position: 372032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:370725-370994:-1:exon

position:370725:-1
position: 370725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:370994:-1
position: 370994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:367293-369037:-1:exon

position:369037:-1
position: 369037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OTULINL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULINL
product: OTU deubiquitinase with linear linkage specificity like, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_038583298.1
SIO_010081: OTULINL
subclass of: SO_0000673
so part of: OTULINL
location: complement(join(367293..369037,370725..370994,371904..372032,374017..374166,374925..375016,375117..375148,375238..375397,392766..393065))
location: region:367293-393065:-1
so has part: feature:392766-393065:-1:exon
so has part: feature:375238-375397:-1:exon
so has part: feature:375117-375148:-1:exon
so has part: feature:374925-375016:-1:exon
so has part: feature:374017-374166:-1:exon
so has part: feature:371904-372032:-1:exon
so has part: feature:370725-370994:-1:exon
so has part: feature:367293-369037:-1:exon

position:393065:-1
position: 393065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392766-393065:-1:exon

position:392766:-1
position: 392766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:375238-375397:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:375117-375148:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374925-375016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374017-374166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:371904-372032:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:370725-370994:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:367293-369037:-1:exon

OTULINL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: OTULINL
product: OTU deubiquitinase with linear linkage specificity like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038583296.1
SIO_010081: OTULINL
subclass of: SO_0000673
so part of: OTULINL
location: complement(join(367293..369037,370725..370994,371904..372032,374017..374166,374925..375016,375117..375148,375238..375397,376038..376739))
location: region:367293-376739:-1
so has part: feature:376038-376739:-1:exon
so has part: feature:375238-375397:-1:exon
so has part: feature:375117-375148:-1:exon
so has part: feature:374925-375016:-1:exon
so has part: feature:374017-374166:-1:exon
so has part: feature:371904-372032:-1:exon
so has part: feature:370725-370994:-1:exon
so has part: feature:367293-369037:-1:exon

position:376739:-1
position: 376739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376038-376739:-1:exon

position:376038:-1
position: 376038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:375238-375397:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:375117-375148:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374925-375016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374017-374166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:371904-372032:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:370725-370994:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:367293-369037:-1:exon

OTULINL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULINL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive ubiquitin thioesterase OTULINL isoform X2
translation: MAARRSPPRARARAREREGPRGPAAGSDQVYSWMLVTSQALGTVWRIAKGSVMLAASFLVPALCYFRRMHYDLGHWLKWWIGYLQRKFKRNLSVEAEVDLLSFCVREWKGETPRAKMMRKACEELFWRHHIKCVRQVKRDNYAALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVDLLKTQWTEFNGIKDYHKRGSMCNILFSDPLLEYKLYEALKFIMLYQVTEVYEQMKTNKVIPNLFQLLFSRETSSDPLSFMINHLNSVGDTCGLEQIDMFILGHSLEIKIKVFRLFKFNSRDFEVCYPDLAPREWPEISLLTENDRHYHIPVF
SIO_010081: OTULINL
subclass of: SO_0000673
so part of: OTULINL
location: complement(join(368864..369037,370725..370994,371904..372032,374017..374166,374925..375016,375117..375148,375238..375397,393756..393831))
location: region:368864-393831:-1
so has part: feature:393756-393831:-1:exon
so has part: feature:375238-375397:-1:exon
so has part: feature:375117-375148:-1:exon
so has part: feature:374925-375016:-1:exon
so has part: feature:374017-374166:-1:exon
so has part: feature:371904-372032:-1:exon
so has part: feature:370725-370994:-1:exon
so has part: feature:368864-369037:-1:exon

XP_038439225.1
type: Protein
SIO_000068: ncbiprotein

position:368864:-1
position: 368864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:393831:-1
position: 393831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393756-393831:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:375238-375397:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:375117-375148:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374925-375016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374017-374166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:371904-372032:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:370725-370994:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:368864-369037:-1:exon

OTULINL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULINL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive ubiquitin thioesterase OTULINL isoform X3
translation: MIDLKTLEGSDQVYSWMLVTSQALGTVWRIAKGSVMLAASFLVPALCYFRRMHYDLGHWLKWWIGYLQRKFKRNLSVEAEVDLLSFCVREWKGETPRAKMMRKACEELFWRHHIKCVRQVKRDNYAALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVDLLKTQWTEFNGIKDYHKRGSMCNILFSDPLLEYKLYEALKFIMLYQVTEVYEQMKTNKVIPNLFQLLFSRETSSDPLSFMINHLNSVGDTCGLEQIDMFILGHSLEIKIKVFRLFKFNSRDFEVCYPDLAPREWPEISLLTENDRHYHIPVF
SIO_010081: OTULINL
subclass of: SO_0000673
so part of: OTULINL
location: complement(join(368864..369037,370725..370994,371904..372032,374017..374166,374925..375016,375117..375148,375238..375397,392766..392790))
location: region:368864-392790:-1
so has part: feature:392766-392790:-1:exon
so has part: feature:375238-375397:-1:exon
so has part: feature:375117-375148:-1:exon
so has part: feature:374925-375016:-1:exon
so has part: feature:374017-374166:-1:exon
so has part: feature:371904-372032:-1:exon
so has part: feature:370725-370994:-1:exon
so has part: feature:368864-369037:-1:exon

XP_038439226.1
type: Protein
SIO_000068: ncbiprotein

position:392790:-1
position: 392790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:392766-392790:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:375238-375397:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:375117-375148:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374925-375016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374017-374166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:371904-372032:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:370725-370994:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:368864-369037:-1:exon

OTULINL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: OTULINL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: inactive ubiquitin thioesterase OTULINL isoform X1
translation: MMPSVMFHNDLRIYKWAEPYGRGIMGVPWCPAEFLEPFLDSTGSDQVYSWMLVTSQALGTVWRIAKGSVMLAASFLVPALCYFRRMHYDLGHWLKWWIGYLQRKFKRNLSVEAEVDLLSFCVREWKGETPRAKMMRKACEELFWRHHIKCVRQVKRDNYAALRSVLFQIFSQGLSFPSWMKEKDIVKLPEKLLFSQGCNWIQQYSFGPEKYTGSNVFGKLRKCVDLLKTQWTEFNGIKDYHKRGSMCNILFSDPLLEYKLYEALKFIMLYQVTEVYEQMKTNKVIPNLFQLLFSRETSSDPLSFMINHLNSVGDTCGLEQIDMFILGHSLEIKIKVFRLFKFNSRDFEVCYPDLAPREWPEISLLTENDRHYHIPVF
SIO_010081: OTULINL
subclass of: SO_0000673
so part of: OTULINL
location: complement(join(368864..369037,370725..370994,371904..372032,374017..374166,374925..375016,375117..375148,375238..375397,376038..376164))
location: region:368864-376164:-1
so has part: feature:376038-376164:-1:exon
so has part: feature:375238-375397:-1:exon
so has part: feature:375117-375148:-1:exon
so has part: feature:374925-375016:-1:exon
so has part: feature:374017-374166:-1:exon
so has part: feature:371904-372032:-1:exon
so has part: feature:370725-370994:-1:exon
so has part: feature:368864-369037:-1:exon

XP_038439224.1
type: Protein
SIO_000068: ncbiprotein

position:376164:-1
position: 376164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376038-376164:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:375238-375397:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:375117-375148:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:374925-375016:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:374017-374166:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:371904-372032:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:370725-370994:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:368864-369037:-1:exon

LOC111093964
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093964
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(399021..411341)
location: region:399021-411341:-1
so has part: feature:399021-411341:-1:exon
subclass of: SO_0000011

111093964
type: Gene
SIO_000068: ncbigene

position:399021:-1
position: 399021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:411341:-1
position: 411341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399021-411341:-1:exon

LOC111093964
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093964
product: uncharacterized LOC111093964, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383632.1
SIO_010081: LOC111093964
subclass of: SO_0000673
so part of: LOC111093964
location: complement(join(399021..399087,404154..404254,407501..411341))
location: region:399021-411341:-1
so has part: feature:407501-411341:-1:exon
so has part: feature:404154-404254:-1:exon
so has part: feature:399021-399087:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:407501-411341:-1:exon

position:407501:-1
position: 407501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:404154-404254:-1:exon

position:404154:-1
position: 404154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:404254:-1
position: 404254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:399021-399087:-1:exon

position:399087:-1
position: 399087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093964
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093964
product: uncharacterized LOC111093964, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383633.1
SIO_010081: LOC111093964
subclass of: SO_0000673
so part of: LOC111093964
location: complement(join(399822..399876,404154..404254,407501..411341))
location: region:399822-411341:-1
so has part: feature:407501-411341:-1:exon
so has part: feature:404154-404254:-1:exon
so has part: feature:399822-399876:-1:exon

position:399822:-1
position: 399822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:407501-411341:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:404154-404254:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:399822-399876:-1:exon

position:399876:-1
position: 399876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC100687594
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC100687594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 411424..447200
location: region:411424-447200:1
so has part: feature:411424-447200:1:exon
subclass of: SO_0000010

100687594
type: Gene
SIO_000068: ncbigene

position:411424:1
position: 411424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447200:1
position: 447200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411424-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X17
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383631.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411424..411623,411902..411964,420520..420741,421275..421332,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411424-447200:1
so has part: feature:411424-411623:1:exon
so has part: feature:411902-411964:1:exon
so has part: feature:420520-420741:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411424-411623:1:exon

position:411623:1
position: 411623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:411902-411964:1:exon

position:411902:1
position: 411902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411964:1
position: 411964
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:420520-420741:1:exon

position:420520:1
position: 420520
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420741:1
position: 420741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:421275-421332:1:exon

position:421275:1
position: 421275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421332:1
position: 421332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:422465-422558:1:exon

position:422465:1
position: 422465
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422558:1
position: 422558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:425270-425476:1:exon

position:425270:1
position: 425270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:425476:1
position: 425476
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:426808-426903:1:exon

position:426808:1
position: 426808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:426903:1
position: 426903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:428215-428373:1:exon

position:428215:1
position: 428215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428373:1
position: 428373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:438374-438487:1:exon

position:438374:1
position: 438374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:438487:1
position: 438487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:438649-447200:1:exon

position:438649:1
position: 438649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100687594
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038583301.1
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(411424..411964,421275..421350,422465..422558,426808..426903,428215..428373,436672..437092)
location: region:411424-437092:1
so has part: feature:411424-411964:1:exon
so has part: feature:421275-421350:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-437092:1:exon

position:437092:1
position: 437092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411424-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421350:1:exon

position:421350:1
position: 421350
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:436672-437092:1:exon

position:436672:1
position: 436672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X15
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383629.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411425..411964,420520..420741,421275..421350,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411425-447200:1
so has part: feature:411425-411964:1:exon
so has part: feature:420520-420741:1:exon
so has part: feature:421275-421350:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

position:411425:1
position: 411425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411425-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420520-420741:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421350:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383625.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411425..411964,420520..420741,421275..421332,422462..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411425-447200:1
so has part: feature:411425-411964:1:exon
so has part: feature:420520-420741:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411425-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420520-420741:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422462-422558:1:exon

position:422462:1
position: 422462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383623.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411425..411964,420520..420741,421275..421332,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411425-447200:1
so has part: feature:411425-411964:1:exon
so has part: feature:420520-420741:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411425-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:420520-420741:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383622.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411964,421275..421350,422462..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411964:1:exon
so has part: feature:421275-421350:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

position:411426:1
position: 411426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421350:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422462-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X14
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383628.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411964,421275..421350,422462..422558,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411964:1:exon
so has part: feature:421275-421350:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421350:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422462-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383621.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411964,421275..421350,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411964:1:exon
so has part: feature:421275-421350:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421350:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383627.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411964,421275..421350,422465..422558,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411964:1:exon
so has part: feature:421275-421350:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421350:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383624.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411623,411860..411964,421275..421332,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411623:1:exon
so has part: feature:411860-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:411860-411964:1:exon

position:411860:1
position: 411860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X16
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383630.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411623,411902..411964,421275..421332,422462..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411623:1:exon
so has part: feature:411902-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:411902-411964:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422462-422558:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383626.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411426..411623,411902..411964,421275..421332,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411426-447200:1
so has part: feature:411426-411623:1:exon
so has part: feature:411902-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:411902-411964:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038583300.1
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(411426..411964,421275..421332,422465..422558,426808..426903,428215..428373,436672..437092)
location: region:411426-437092:1
so has part: feature:411426-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-437092:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411426-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:436672-437092:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X20
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383616.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411427..411964,421275..421332,422462..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411427-447200:1
so has part: feature:411427-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

position:411427:1
position: 411427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411427-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422462-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383619.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411427..411964,421275..421332,422462..422558,428215..428373,438374..438487,438649..447200)
location: region:411427-447200:1
so has part: feature:411427-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411427-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422462-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X22
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383618.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411427..411964,421275..421332,422465..422558,428215..428373,438374..438487,438649..447200)
location: region:411427-447200:1
so has part: feature:411427-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411427-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X21
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383617.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411427..411623,411748..411964,421275..421332,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411427-447200:1
so has part: feature:411427-411623:1:exon
so has part: feature:411748-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411427-411623:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:411748-411964:1:exon

position:411748:1
position: 411748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383620.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411427..411964,421275..421332,422465..422558,428215..428373,436672..437092)
location: region:411427-437092:1
so has part: feature:411427-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-437092:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411427-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:436672-437092:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X18
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383614.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411428..411964,421275..421332,422465..422558,425270..425476,426808..426903,428215..428373,438374..438487,438649..447200)
location: region:411428-447200:1
so has part: feature:411428-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

position:411428:1
position: 411428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411428-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X19
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383615.1
SIO_010081: LOC100687594
so part of: LOC100687594
location: join(411428..411964,421275..421332,422465..422558,425270..425476,428215..428373,438374..438487,438649..447200)
location: region:411428-447200:1
so has part: feature:411428-411964:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:425270-425476:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:438374-438487:1:exon
so has part: feature:438649-447200:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411428-411964:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:425270-425476:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:438374-438487:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:438649-447200:1:exon

LOC100687594
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038583302.1
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(420752..420878,421275..421332,422462..422558,426808..426903,428215..428373,436672..437092)
location: region:420752-437092:1
so has part: feature:420752-420878:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422462-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-437092:1:exon

position:420752:1
position: 420752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:420752-420878:1:exon

position:420878:1
position: 420878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422462-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:436672-437092:1:exon

LOC100687594
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC100687594
product: uncharacterized LOC100687594, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038583303.1
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(420752..420878,421275..421332,422465..422558,426808..426903,428215..428373,436672..437092)
location: region:420752-437092:1
so has part: feature:420752-420878:1:exon
so has part: feature:421275-421332:1:exon
so has part: feature:422465-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-437092:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:420752-420878:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:421275-421332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:422465-422558:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:436672-437092:1:exon

LOC100687594
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC100687594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100687594
translation: MLILTAQGPHLGSDGSPDDRYPGPRGQNELMMGHIFHMIFFIHEPSLALDCRTISGSQCPQHSVTFRGLDATQLMCPLPTEGHLGCFQVLPITNEAALKICTQAFVWTCFQLLWDPVAPVWLSLSSHWKVSAGAATWVCS
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(422472..422558,426808..426903,428215..428373,436672..436752)
location: region:422472-436752:1
so has part: feature:422472-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-436752:1:exon

XP_038439228.1
type: Protein
SIO_000068: ncbiprotein

position:422472:1
position: 422472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:436752:1
position: 436752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:422472-422558:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:436672-436752:1:exon

LOC100687594
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC100687594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100687594
translation: MLILTAQGPHLGSDGSPDDRYPGPRGQNELMMGHIFHMIFFIHEPSLALDCRTISGSQCPQHSVTFRGLDATQLMCPLPTEGHLGCFQVLPITNEAALKICTQAFVWTCFQLLWDPVAPVWLSLSSHWKVSAGAATWVCS
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(422472..422558,426808..426903,428215..428373,436672..436752)
location: region:422472-436752:1
so has part: feature:422472-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-436752:1:exon

XP_038439229.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422472-422558:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:436672-436752:1:exon

LOC100687594
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC100687594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100687594
translation: MLILTAQGPHLGSDGSPDDRYPGPRGQNELMMGHIFHMIFFIHEPSLALDCRTISGSQCPQHSVTFRGLDATQLMCPLPTEGHLGCFQVLPITNEAALKICTQAFVWTCFQLLWDPVAPVWLSLSSHWKVSAGAATWVCS
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(422472..422558,426808..426903,428215..428373,436672..436752)
location: region:422472-436752:1
so has part: feature:422472-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-436752:1:exon

XP_038439230.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422472-422558:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:436672-436752:1:exon

LOC100687594
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC100687594
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC100687594
translation: MLILTAQGPHLGSDGSPDDRYPGPRGQNELMMGHIFHMIFFIHEPSLALDCRTISGSQCPQHSVTFRGLDATQLMCPLPTEGHLGCFQVLPITNEAALKICTQAFVWTCFQLLWDPVAPVWLSLSSHWKVSAGAATWVCS
SIO_010081: LOC100687594
subclass of: SO_0000673
so part of: LOC100687594
location: join(422472..422558,426808..426903,428215..428373,436672..436752)
location: region:422472-436752:1
so has part: feature:422472-422558:1:exon
so has part: feature:426808-426903:1:exon
so has part: feature:428215-428373:1:exon
so has part: feature:436672-436752:1:exon

XP_038439231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:422472-422558:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:426808-426903:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:428215-428373:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:436672-436752:1:exon

TRIO
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: TRIO
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(437086..788757)
location: region:437086-788757:-1
so has part: feature:437086-788757:-1:exon
subclass of: SO_0000010

478610
type: Gene
SIO_000068: ncbigene

position:437086:-1
position: 437086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:788757:-1
position: 788757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:437086-788757:-1:exon

TRIO
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: TRIO
product: trio Rho guanine nucleotide exchange factor, transcript variant X1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 21 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_038583299.1
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: complement(join(437086..439444,439931..440069,442826..443026,444765..444843,446147..446268,446529..446691,446887..446914,447754..447892,449252..449499,453470..454305,456449..456626,458521..458712,459682..459759,459991..460041,460805..460897,461679..461768,463732..463801,466130..466233,467636..467702,469000..469148,474622..474717,477183..477353,478464..478756,520310..520553,533297..533396,533885..534027,537737..537838,539750..539940,541889..542000,544432..544524,546679..546768,547361..547430,548359..548468,549077..549143,549946..550061,550157..550351,558850..558972,562888..563003,567333..567447,570813..570962,571369..571560,573426..573545,575353..575519,576325..576520,580784..580958,581947..582116,598780..598971,612148..612270,623523..623753,634130..634261,642089..642280,645961..646083,647581..648093,650699..650891,656849..656963,669337..669411,788600..788757))
location: region:437086-788757:-1
so has part: feature:788600-788757:-1:exon
so has part: feature:669337-669411:-1:exon
so has part: feature:656849-656963:-1:exon
so has part: feature:650699-650891:-1:exon
so has part: feature:647581-648093:-1:exon
so has part: feature:645961-646083:-1:exon
so has part: feature:642089-642280:-1:exon
so has part: feature:634130-634261:-1:exon
so has part: feature:623523-623753:-1:exon
so has part: feature:612148-612270:-1:exon
so has part: feature:598780-598971:-1:exon
so has part: feature:581947-582116:-1:exon
so has part: feature:580784-580958:-1:exon
so has part: feature:576325-576520:-1:exon
so has part: feature:575353-575519:-1:exon
so has part: feature:573426-573545:-1:exon
so has part: feature:571369-571560:-1:exon
so has part: feature:570813-570962:-1:exon
so has part: feature:567333-567447:-1:exon
so has part: feature:562888-563003:-1:exon
so has part: feature:558850-558972:-1:exon
so has part: feature:550157-550351:-1:exon
so has part: feature:549946-550061:-1:exon
so has part: feature:549077-549143:-1:exon
so has part: feature:548359-548468:-1:exon
so has part: feature:547361-547430:-1:exon
so has part: feature:546679-546768:-1:exon
so has part: feature:544432-544524:-1:exon
so has part: feature:541889-542000:-1:exon
so has part: feature:539750-539940:-1:exon
so has part: feature:537737-537838:-1:exon
so has part: feature:533885-534027:-1:exon
so has part: feature:533297-533396:-1:exon
so has part: feature:520310-520553:-1:exon
so has part: feature:478464-478756:-1:exon
so has part: feature:477183-477353:-1:exon
so has part: feature:474622-474717:-1:exon
so has part: feature:469000-469148:-1:exon
so has part: feature:467636-467702:-1:exon
so has part: feature:466130-466233:-1:exon
so has part: feature:463732-463801:-1:exon
so has part: feature:461679-461768:-1:exon
so has part: feature:460805-460897:-1:exon
so has part: feature:459991-460041:-1:exon
so has part: feature:459682-459759:-1:exon
so has part: feature:458521-458712:-1:exon
so has part: feature:456449-456626:-1:exon
so has part: feature:453470-454305:-1:exon
so has part: feature:449252-449499:-1:exon
so has part: feature:447754-447892:-1:exon
so has part: feature:446887-446914:-1:exon
so has part: feature:446529-446691:-1:exon
so has part: feature:446147-446268:-1:exon
so has part: feature:444765-444843:-1:exon
so has part: feature:442826-443026:-1:exon
so has part: feature:439931-440069:-1:exon
so has part: feature:437086-439444:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:788600-788757:-1:exon

position:788600:-1
position: 788600
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:669337-669411:-1:exon

position:669337:-1
position: 669337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:669411:-1
position: 669411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:656849-656963:-1:exon

position:656849:-1
position: 656849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:656963:-1
position: 656963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:650699-650891:-1:exon

position:650699:-1
position: 650699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:650891:-1
position: 650891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:647581-648093:-1:exon

position:647581:-1
position: 647581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:648093:-1
position: 648093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:645961-646083:-1:exon

position:645961:-1
position: 645961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:646083:-1
position: 646083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:642089-642280:-1:exon

position:642089:-1
position: 642089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:642280:-1
position: 642280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:634130-634261:-1:exon

position:634130:-1
position: 634130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:634261:-1
position: 634261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:623523-623753:-1:exon

position:623523:-1
position: 623523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:623753:-1
position: 623753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:612148-612270:-1:exon

position:612148:-1
position: 612148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:612270:-1
position: 612270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:598780-598971:-1:exon

position:598780:-1
position: 598780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:598971:-1
position: 598971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:581947-582116:-1:exon

position:581947:-1
position: 581947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582116:-1
position: 582116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:580784-580958:-1:exon

position:580784:-1
position: 580784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580958:-1
position: 580958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:576325-576520:-1:exon

position:576325:-1
position: 576325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576520:-1
position: 576520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:575353-575519:-1:exon

position:575353:-1
position: 575353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:575519:-1
position: 575519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:573426-573545:-1:exon

position:573426:-1
position: 573426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573545:-1
position: 573545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:571369-571560:-1:exon

position:571369:-1
position: 571369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571560:-1
position: 571560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:570813-570962:-1:exon

position:570813:-1
position: 570813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:570962:-1
position: 570962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:567333-567447:-1:exon

position:567333:-1
position: 567333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:567447:-1
position: 567447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:562888-563003:-1:exon

position:562888:-1
position: 562888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:563003:-1
position: 563003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:558850-558972:-1:exon

position:558850:-1
position: 558850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:558972:-1
position: 558972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:550157-550351:-1:exon

position:550157:-1
position: 550157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:550351:-1
position: 550351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:549946-550061:-1:exon

position:549946:-1
position: 549946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:550061:-1
position: 550061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:549077-549143:-1:exon

position:549077:-1
position: 549077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:549143:-1
position: 549143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:548359-548468:-1:exon

position:548359:-1
position: 548359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:548468:-1
position: 548468
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 26
SIO_000628: feature:547361-547430:-1:exon

position:547361:-1
position: 547361
reference: sequence
type: ReverseStrandPosition
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position:547430:-1
position: 547430
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 27
SIO_000628: feature:546679-546768:-1:exon

position:546679:-1
position: 546679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:546768:-1
position: 546768
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 28
SIO_000628: feature:544432-544524:-1:exon

position:544432:-1
position: 544432
reference: sequence
type: ReverseStrandPosition
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position:544524:-1
position: 544524
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 29
SIO_000628: feature:541889-542000:-1:exon

position:541889:-1
position: 541889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:542000:-1
position: 542000
reference: sequence
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urn:…
SIO_000300: 30
SIO_000628: feature:539750-539940:-1:exon

position:539750:-1
position: 539750
reference: sequence
type: ReverseStrandPosition
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position:539940:-1
position: 539940
reference: sequence
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urn:…
SIO_000300: 31
SIO_000628: feature:537737-537838:-1:exon

position:537737:-1
position: 537737
reference: sequence
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position:537838:-1
position: 537838
reference: sequence
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urn:…
SIO_000300: 32
SIO_000628: feature:533885-534027:-1:exon

position:533885:-1
position: 533885
reference: sequence
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position:534027:-1
position: 534027
reference: sequence
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urn:…
SIO_000300: 33
SIO_000628: feature:533297-533396:-1:exon

position:533297:-1
position: 533297
reference: sequence
type: ReverseStrandPosition
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position:533396:-1
position: 533396
reference: sequence
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urn:…
SIO_000300: 34
SIO_000628: feature:520310-520553:-1:exon

position:520310:-1
position: 520310
reference: sequence
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position:520553:-1
position: 520553
reference: sequence
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urn:…
SIO_000300: 35
SIO_000628: feature:478464-478756:-1:exon

position:478464:-1
position: 478464
reference: sequence
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position:478756:-1
position: 478756
reference: sequence
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urn:…
SIO_000300: 36
SIO_000628: feature:477183-477353:-1:exon

position:477183:-1
position: 477183
reference: sequence
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position:477353:-1
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reference: sequence
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urn:…
SIO_000300: 37
SIO_000628: feature:474622-474717:-1:exon

position:474622:-1
position: 474622
reference: sequence
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position:474717:-1
position: 474717
reference: sequence
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urn:…
SIO_000300: 38
SIO_000628: feature:469000-469148:-1:exon

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position: 469000
reference: sequence
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position:469148:-1
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urn:…
SIO_000300: 39
SIO_000628: feature:467636-467702:-1:exon

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reference: sequence
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position:467702:-1
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urn:…
SIO_000300: 40
SIO_000628: feature:466130-466233:-1:exon

position:466130:-1
position: 466130
reference: sequence
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urn:…
SIO_000300: 41
SIO_000628: feature:463732-463801:-1:exon

position:463732:-1
position: 463732
reference: sequence
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position:463801:-1
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reference: sequence
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urn:…
SIO_000300: 42
SIO_000628: feature:461679-461768:-1:exon

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position: 461679
reference: sequence
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position:461768:-1
position: 461768
reference: sequence
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urn:…
SIO_000300: 43
SIO_000628: feature:460805-460897:-1:exon

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reference: sequence
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position:460897:-1
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reference: sequence
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urn:…
SIO_000300: 44
SIO_000628: feature:459991-460041:-1:exon

position:459991:-1
position: 459991
reference: sequence
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position:460041:-1
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reference: sequence
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urn:…
SIO_000300: 45
SIO_000628: feature:459682-459759:-1:exon

position:459682:-1
position: 459682
reference: sequence
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urn:…
SIO_000300: 46
SIO_000628: feature:458521-458712:-1:exon

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position: 458521
reference: sequence
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urn:…
SIO_000300: 47
SIO_000628: feature:456449-456626:-1:exon

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reference: sequence
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reference: sequence
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urn:…
SIO_000300: 48
SIO_000628: feature:453470-454305:-1:exon

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position: 453470
reference: sequence
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position:454305:-1
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urn:…
SIO_000300: 49
SIO_000628: feature:449252-449499:-1:exon

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position: 449252
reference: sequence
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reference: sequence
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urn:…
SIO_000300: 50
SIO_000628: feature:447754-447892:-1:exon

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reference: sequence
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urn:…
SIO_000300: 51
SIO_000628: feature:446887-446914:-1:exon

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reference: sequence
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reference: sequence
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urn:…
SIO_000300: 52
SIO_000628: feature:446529-446691:-1:exon

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position: 446529
reference: sequence
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position:446691:-1
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reference: sequence
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urn:…
SIO_000300: 53
SIO_000628: feature:446147-446268:-1:exon

position:446147:-1
position: 446147
reference: sequence
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position:446268:-1
position: 446268
reference: sequence
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urn:…
SIO_000300: 54
SIO_000628: feature:444765-444843:-1:exon

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position: 444765
reference: sequence
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reference: sequence
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urn:…
SIO_000300: 55
SIO_000628: feature:442826-443026:-1:exon

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reference: sequence
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position:443026:-1
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reference: sequence
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urn:…
SIO_000300: 56
SIO_000628: feature:439931-440069:-1:exon

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position: 439931
reference: sequence
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position:440069:-1
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reference: sequence
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urn:…
SIO_000300: 57
SIO_000628: feature:437086-439444:-1:exon

position:439444:-1
position: 439444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRIO
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: TRIO
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: triple functional domain protein isoform X1
translation: MSGSSGGAAAPAASSGPAATASAGGSGCGGGAGEGAEEAAKDLADIAAFFRSGFRKNDEMKAMDVLPILKEKVAYLSGGRDKRGGPILTFPARSNHDRIRQEDLRRLISYLACIPSEEVCKRGFTVIVDMRGSKWDSIKPLLKILQESFPCCIHVALIIKPDNFWQKQRTNFGSSKFEFETNMVSLEGLTKVVDPSQLTPEFDGCLEYNHEEWIEIRVAFEDYISNATHMLSRLEELQDILAKKELPQDLEGARNMIEEHSQLKKKVIKAPIEDLDLEGQKLLQRIQSSDSFPKKNSGSGNADLQSLLPKVSAMLDRLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWITHNKGLFLNSYTEIGTSHPHAMELQTQHNHFAMNCMNVYVNINRIMSVANRLVESGHYASQQIKQIANQLEQEWKAFAAALDERSTLLDMSSIFHQKAEKYMSNVDSWCKACGEVDLPSELQDLEDAIHHHQGIYEHITLAYSEVSQDGKSLLDKLQRPLTPGSSDSLTASANYSKAVHHVLDVIHEVLHHQRQLENIWQHRKVRLHQRLQLCVFQQDVQQVLDWIENHGEAFLSKHTGVGKSLHRARALQKRHEDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYQAAHQLEDRIQDFVRRVEQRKILLDMSVSFHSHVKELWTWLEELQKELLDDVYAESVEAVQDLIKRFGQQQQTTLQVTVNVIKEGEDLIQQLRDSAISSNKTPHNSSISHIETVLQQLDEAQAQMEELFQERKIKLELFLQLRIFERDAIDIISDLESWNDELSQQMNDFDTEDLTIAEQRLQHHADKALTMNNLTFDVIHQGQDLLQYVNEVQASGVELLCDRDVDMATRVQDLLEFLHEKQQELDLAAEQHRKHLEQCVQLRHLQAEVKQVLGWIRNGESMLNAGLITASSLQEAEQLQREHEQFQHAIEKTHQSALQVQQKAEAMLQANHYDMDMIRDCAEKVASHWQQLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYKREEDWCGGADKLGPNSETDHVTPMISKHLEQKEAFLKACTLARRNADVFLKYLHRNSVNMPGMVTHIKAPEQQVKNILNELFQRENRVLHYWTMRKRRLDQCQQYVVFERSAKQALEWIHDNGEFYLSTHTSTGSSIQHTQELLKEHEEFQITAKQTKERVKLLIQLADGFCEKGHAHAAEIKKCVTAVDKRYRDFSLRMEKYRTSLEKALGISSDSNKSSKSLQLDIIPASVPGSEVKLRDAAHELNEEKRKSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPAGIVNRELVIFGNMQEIYEFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGSYFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGEIKDGLEVMLSVPKRANDAMHLSMLEGFDENIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPKTAPATRQKGRRDGEDLDSQGDGSSQPDTISIASRTSQNTLDSDKLSGGCELTVVIHDFTACNSTELTIRRGQTVEVLERPHDKPDWCLVRTTDRSPAAEGLVPCGSLCIAHSRSSMEMEGIFNHKDSLSVSSNDASPPASVASLQPHLMGAQSSPGPKRPGNTLRKWLTSPVRRLSSGKADGHVKKLAHKHKKSREVRKSTDAGSQKDSDDSAATPQDETVEERGRNEGLSSGTLSKSSSSGMQSCGEEEGEEGADAVPLPPPMAIQQHSLLQPDSQDDKASSRLLVRPTSSETPSAAELVSAIEELVKSKMALEDRPSSLLVDQGDSSSPSFNPSDNSLLSSSSPIDEMEERKSSSLKRRHYVLQELVETERDYVRDLGYVVEGYMALMK…
SIO_010081: TRIO
subclass of: SO_0000673
so part of: TRIO
location: complement(join(438896..439444,439931..440069,442826..443026,444765..444843,446147..446268,446529..446691,446887..446914,447754..447892,449252..449499,453470..454305,456449..456626,458521..458712,459682..459759,459991..460041,460805..460897,461679..461768,463732..463801,466130..466233,467636..467702,469000..469148,474622..474717,477183..477353,478464..478756,520310..520553,533297..533396,533885..534027,537737..537838,539750..539940,541889..542000,544432..544524,546679..546768,547361..547430,548359..548468,549077..549143,549946..550061,550157..550351,558850..558972,562888..563003,567333..567447,570813..570962,571369..571560,573426..573545,575353..575519,576325..576520,580784..580958,581947..582116,598780..598971,612148..612270,623523..623753,634130..634261,642089..642280,645961..646083,647581..648093,650699..650891,656849..656963,669337..669411,788600..788757))
location: region:438896-788757:-1
so has part: feature:788600-788757:-1:exon
so has part: feature:669337-669411:-1:exon
so has part: feature:656849-656963:-1:exon
so has part: feature:650699-650891:-1:exon
so has part: feature:647581-648093:-1:exon
so has part: feature:645961-646083:-1:exon
so has part: feature:642089-642280:-1:exon
so has part: feature:634130-634261:-1:exon
so has part: feature:623523-623753:-1:exon
so has part: feature:612148-612270:-1:exon
so has part: feature:598780-598971:-1:exon
so has part: feature:581947-582116:-1:exon
so has part: feature:580784-580958:-1:exon
so has part: feature:576325-576520:-1:exon
so has part: feature:575353-575519:-1:exon
so has part: feature:573426-573545:-1:exon
so has part: feature:571369-571560:-1:exon
so has part: feature:570813-570962:-1:exon
so has part: feature:567333-567447:-1:exon
so has part: feature:562888-563003:-1:exon
so has part: feature:558850-558972:-1:exon
so has part: feature:550157-550351:-1:exon
so has part: feature:549946-550061:-1:exon
so has part: feature:549077-549143:-1:exon
so has part: feature:548359-548468:-1:exon
so has part: feature:547361-547430:-1:exon
so has part: feature:546679-546768:-1:exon
so has part: feature:544432-544524:-1:exon
so has part: feature:541889-542000:-1:exon
so has part: feature:539750-539940:-1:exon
so has part: feature:537737-537838:-1:exon
so has part: feature:533885-534027:-1:exon
so has part: feature:533297-533396:-1:exon
so has part: feature:520310-520553:-1:exon
so has part: feature:478464-478756:-1:exon
so has part: feature:477183-477353:-1:exon
so has part: feature:474622-474717:-1:exon
so has part: feature:469000-469148:-1:exon
so has part: feature:467636-467702:-1:exon
so has part: feature:466130-466233:-1:exon
so has part: feature:463732-463801:-1:exon
so has part: feature:461679-461768:-1:exon
so has part: feature:460805-460897:-1:exon
so has part: feature:459991-460041:-1:exon
so has part: feature:459682-459759:-1:exon
so has part: feature:458521-458712:-1:exon
so has part: feature:456449-456626:-1:exon
so has part: feature:453470-454305:-1:exon
so has part: feature:449252-449499:-1:exon
so has part: feature:447754-447892:-1:exon
so has part: feature:446887-446914:-1:exon
so has part: feature:446529-446691:-1:exon
so has part: feature:446147-446268:-1:exon
so has part: feature:444765-444843:-1:exon
so has part: feature:442826-443026:-1:exon
so has part: feature:439931-440069:-1:exon
so has part: feature:438896-439444:-1:exon

XP_038439227.1
type: Protein
SIO_000068: ncbiprotein

position:438896:-1
position: 438896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:788600-788757:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:669337-669411:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:656849-656963:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:650699-650891:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:647581-648093:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:645961-646083:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:642089-642280:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:634130-634261:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:623523-623753:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:612148-612270:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:598780-598971:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:581947-582116:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:580784-580958:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:576325-576520:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:575353-575519:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:573426-573545:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:571369-571560:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:570813-570962:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:567333-567447:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:562888-563003:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:558850-558972:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:550157-550351:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:549946-550061:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:549077-549143:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:548359-548468:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:547361-547430:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:546679-546768:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:544432-544524:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:541889-542000:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:539750-539940:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:537737-537838:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:533885-534027:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:533297-533396:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:520310-520553:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:478464-478756:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:477183-477353:-1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:474622-474717:-1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:469000-469148:-1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:467636-467702:-1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:466130-466233:-1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:463732-463801:-1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:461679-461768:-1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:460805-460897:-1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:459991-460041:-1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:459682-459759:-1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:458521-458712:-1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:456449-456626:-1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:453470-454305:-1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:449252-449499:-1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:447754-447892:-1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:446887-446914:-1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:446529-446691:-1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:446147-446268:-1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:444765-444843:-1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:442826-443026:-1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:439931-440069:-1:exon

urn:…
SIO_000300: 57
SIO_000628: feature:438896-439444:-1:exon

LOC119867541
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867541
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: 468012..468151
location: region:468012-468151:1
so has part: feature:468012-468151:1:exon

119867541
type: Gene
SIO_000068: ncbigene

position:468012:1
position: 468012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:468151:1
position: 468151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468012-468151:1:exon

LOC119867541
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119867541
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00015
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC119867541
subclass of: SO_0000673
so part of: LOC119867541
location: 468012..468151
location: region:468012-468151:1
so has part: feature:468012-468151:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:468012-468151:1:exon

LOC102154030
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102154030
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 666133..666778
location: region:666133-666778:1
so has part: feature:666133-666778:1:exon

102154030
type: Gene
SIO_000068: ncbigene

position:666133:1
position: 666133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:666778:1
position: 666778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:666133-666778:1:exon

LOC102154030
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC102154030
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 4 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC102154030
subclass of: SO_0000673
so part of: LOC102154030
location: 666133..666778
location: region:666133-666778:1
so has part: feature:666133-666778:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:666133-666778:1:exon

LOC119867466
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867466
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(715181..717324)
location: region:715181-717324:-1
so has part: feature:715181-717324:-1:exon
subclass of: SO_0000011

119867466
type: Gene
SIO_000068: ncbigene

position:715181:-1
position: 715181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:717324:-1
position: 717324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:715181-717324:-1:exon

LOC119867466
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867466
product: uncharacterized LOC119867466, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_005383634.1
SIO_010081: LOC119867466
subclass of: SO_0000673
so part of: LOC119867466
location: complement(join(715181..715787,716120..717324))
location: region:715181-717324:-1
so has part: feature:716120-717324:-1:exon
so has part: feature:715181-715787:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:716120-717324:-1:exon

position:716120:-1
position: 716120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:715181-715787:-1:exon

position:715787:-1
position: 715787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093863
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093863
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(731235..748769)
location: region:731235-748769:-1
so has part: feature:731235-748769:-1:exon
subclass of: SO_0000011

111093863
type: Gene
SIO_000068: ncbigene

position:731235:-1
position: 731235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:748769:-1
position: 748769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:731235-748769:-1:exon

LOC111093863
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093863
product: uncharacterized LOC111093863, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005383635.1
SIO_010081: LOC111093863
subclass of: SO_0000673
so part of: LOC111093863
location: complement(join(731235..731526,746550..746676,747121..748769))
location: region:731235-748769:-1
so has part: feature:747121-748769:-1:exon
so has part: feature:746550-746676:-1:exon
so has part: feature:731235-731526:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:747121-748769:-1:exon

position:747121:-1
position: 747121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:746550-746676:-1:exon

position:746550:-1
position: 746550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:746676:-1
position: 746676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:731235-731526:-1:exon

position:731526:-1
position: 731526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DNAH5
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: DNAH5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 904270..1199480
location: region:904270-1199480:1
so has part: feature:904270-1199480:1:exon
subclass of: SO_0000010

606983
type: Gene
SIO_000068: ncbigene

position:904270:1
position: 904270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1199480:1
position: 1199480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:904270-1199480:1:exon

DNAH5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: DNAH5
product: dynein axonemal heavy chain 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038583304.1
SIO_010081: DNAH5
subclass of: SO_0000673
so part of: DNAH5
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type: ExactPosition

urn:…
SIO_000300: 59
SIO_000628: feature:1138550-1138753:1:exon

position:1138550:1
position: 1138550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1138753:1
position: 1138753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 60
SIO_000628: feature:1141247-1141426:1:exon

position:1141247:1
position: 1141247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1141426:1
position: 1141426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 61
SIO_000628: feature:1145158-1145295:1:exon

position:1145158:1
position: 1145158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1145295:1
position: 1145295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 62
SIO_000628: feature:1155424-1155559:1:exon

position:1155424:1
position: 1155424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1155559:1
position: 1155559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 63
SIO_000628: feature:1156113-1156429:1:exon

position:1156113:1
position: 1156113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1156429:1
position: 1156429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 64
SIO_000628: feature:1157001-1157156:1:exon

position:1157001:1
position: 1157001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1157156:1
position: 1157156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 65
SIO_000628: feature:1158064-1158246:1:exon

position:1158064:1
position: 1158064
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1158246:1
position: 1158246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 66
SIO_000628: feature:1164987-1165230:1:exon

position:1164987:1
position: 1164987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1165230:1
position: 1165230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 67
SIO_000628: feature:1166418-1166532:1:exon

position:1166418:1
position: 1166418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1166532:1
position: 1166532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 68
SIO_000628: feature:1167022-1167212:1:exon

position:1167022:1
position: 1167022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1167212:1
position: 1167212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 69
SIO_000628: feature:1170228-1170349:1:exon

position:1170228:1
position: 1170228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1170349:1
position: 1170349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 70
SIO_000628: feature:1172125-1172274:1:exon

position:1172125:1
position: 1172125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1172274:1
position: 1172274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 71
SIO_000628: feature:1176490-1176735:1:exon

position:1176490:1
position: 1176490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1176735:1
position: 1176735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 72
SIO_000628: feature:1179791-1180010:1:exon

position:1179791:1
position: 1179791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1180010:1
position: 1180010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 73
SIO_000628: feature:1181158-1181363:1:exon

position:1181158:1
position: 1181158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1181363:1
position: 1181363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 74
SIO_000628: feature:1181959-1182162:1:exon

position:1181959:1
position: 1181959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1182162:1
position: 1182162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 75
SIO_000628: feature:1184381-1184596:1:exon

position:1184381:1
position: 1184381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1184596:1
position: 1184596
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 76
SIO_000628: feature:1186175-1186387:1:exon

position:1186175:1
position: 1186175
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1186387:1
position: 1186387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 77
SIO_000628: feature:1188969-1189121:1:exon

position:1188969:1
position: 1188969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1189121:1
position: 1189121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 78
SIO_000628: feature:1189531-1189762:1:exon

position:1189531:1
position: 1189531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1189762:1
position: 1189762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 79
SIO_000628: feature:1197988-1199480:1:exon

position:1197988:1
position: 1197988
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DNAH5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: DNAH5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: dynein heavy chain 5, axonemal
translation: MEPRQRLKEEKEAKRACLDGRHDYLFAIVASCIDLDKTEVEDAILEGNQIERIDQLFAAGGLRHLIFYYQDMEVAETGQLGSPGGVNPISEKIKKPKVFVTEGKDVALTGVCVFFIRTDPSRAITPENIHWEVSFNMLDTTDGGLLNSMRRLLSDIFIPALRATSHGWSELEGLQEASSIQQEFLSSLEGFVSVLSSAQQSLKEKVNLQKCDIFDLKTLKEPIDYLTLANNPETLEKIEGCMRVWIRQTEQVLAENNQLRREADDLGPRAELEHWKKRLSKFNYLLDQLKSPDVKAVLAVLAAARSKLLKTWREVDIRVTDAANEAKDNVKYLYTLEKCCVPLYSTDPISMIDAIPTLINAIKMIYSISHYYNTSEKIISLFVKVTNQMISACKAYITNNGTASIWSQPQDVVMEKILSAIKLKQEYQHCFHKMKQKLKQDPSEKQFEFSEMYIFGKFETFHRRLAKIMDIFTTFKTYSVLQDSKIEGLEDMVTRYQSMVATIKKKEYNFLDQRKMDFDQDYEEFCKQTCDLHNELQKFMDVTFERIQNTNQALRMLKKFERLNIPNLGIDDKYRHILANYGADIDMISKLYTKQKCDPPLARDQPPIAGKILWARQLFHRIQQPMQLFQQHPTVLQTAEAKPVIRNYNRVAKVLLEFEVLYHRAWLEQIEEIHIGLEASLLVKSPCMGELFVNFDPQILTLFRETECMSQMGLEVSPFAAALFQKRDVYKKNFSNVKMMLAEYQRVKSKMPPTIEQLMVHHLAKVDEALQPGLAAITWASLNIETYLKNAFAKIKDLELLLDRVNDLMEFRIDAVLEEMSSTPLCQLPQEEPLTCAEFLQMTKDLCVKGAQILNFKSSLVEEAVNELINMLLDGEVLSKEESDKVSDANRADSKTESSAKTEEGKSDTLTSPLRAPAGLLPLTTILRKKKEMEMLEEEACGLLSHFNHQNVDALLRVTRNALEAIRRRIHSSNTMNFLDSKSTSRIKQNSLPIFRASITLAIPNIAMAPALEDIQQTLNKAVECIVHVTKGVRQWSSELLSKKKMEERKMTALQDNDSDSEIEMEENEPPDTFEIASVNLPIPVQIRNYYKNVSDNKEIVKLVSVLSTIINSTKKEVITSMDCFKRYNHIWQKEKEEMVMMFITKTPLLSEFESQILYFQKLEQEINAEAECICVGAIALYTADLKFTLTAETKAWMVVIGRHCNKKYRSEMENIFTLVEEFNKKLNRQIKDLDDIRIAMAALKEIREQQISIDFQVGPIEESYALLNKYGLLIAKEEMDKVDTLRYSWEKLLARASEVQNELVSLQPSFRKELISTVEIFLQDCHQFYLDYDLNGPMASGLKPQEASDRLIIFQNQFDNIYRKYITYTGGEELFGLPVTQYPQLLEIKKQLNLLQKIYTLYNSVIETVNSYHDILWSEVNIEKINNELSEFQNRCRKLPRALKDWQAFLDLKKTIDDFSECCPLLEHMASKAMMERHWKAIAALTGHTMDVGKETFKLRNIMEAPLLKYKDEIEDICISAMKERDIEQKLKQVTNEWDSKAFTFGSFKTRGELLLRGDSTSEIIASMEDSLMLLGSLLSNRYNVPFKAQIQKWVQCLSNSTDIIENWMMVQNLWIYLEAVFVGGDIAKQLPKEAKRFSTIDKSWVKIMTRAHEMPNVVQCCVGDETMGQLLPHLLDQLEMCQKSLTGYLEKKRLCFPRFFFVSDPALLEILGQASDTHTIQAHLVNVFDNIKTVKFHEKIYDRILSISSREGETIELDKPVMAEGNVEIWLNSLLEESQSSLHLVIRQAAANIQETGFQLIEFLSSFPAQVGLLGIQMIWTRDSEEALRNAKYDKKIMQKTNQSFLELLNTLIGITTKDLSSMERVKYETLITIHVHQRDIFDDLCHMHIKSPTDFEWLKQCRFYFNEDSDKMMIHITDVAFIYQNEFLGCTDRLVITPLTDRCYITLAQALGMSMGGAPAGPAGTGKTETTKDMGRCLGKYVVVFNCSDQMDFRGLG…
SIO_010081: DNAH5
subclass of: SO_0000673
so part of: DNAH5
location: join(904355..904366,978386..978520,985284..985368,988261..988421,989576..989797,991579..991716,992463..992639,993590..993703,994845..994952,997151..997273,997805..998020,1001093..1001200,1006812..1006897,1007706..1008027,1009142..1009348,1015274..1015445,1020389..1020534,1022969..1023134,1025792..1026031,1027765..1027955,1028043..1028127,1031152..1031285,1035592..1035793,1036540..1036775,1040245..1040463,1041491..1041553,1041842..1042080,1043243..1043483,1045634..1045833,1048716..1048869,1050938..1051101,1054118..1054274,1057749..1057961,1058737..1058961,1060338..1060510,1067296..1067474,1067861..1068048,1068381..1068575,1072359..1072493,1073569..1073676,1075198..1075351,1076481..1076627,1079016..1079257,1082699..1082875,1083292..1083493,1085401..1085543,1086167..1086301,1102005..1102127,1102316..1102529,1103838..1104061,1105840..1106038,1108629..1108801,1113391..1113521,1117071..1117224,1118387..1118654,1133658..1133889,1135040..1135154,1135390..1135566,1138550..1138753,1141247..1141426,1145158..1145295,1155424..1155559,1156113..1156429,1157001..1157156,1158064..1158246,1164987..1165230,1166418..1166532,1167022..1167212,1170228..1170349,1172125..1172274,1176490..1176735,1179791..1180010,1181158..1181363,1181959..1182162,1184381..1184596,1186175..1186387,1188969..1189121,1189531..1189762,1197988..1198139)
location: region:904355-1198139:1
so has part: feature:904355-904366:1:exon
so has part: feature:978386-978520:1:exon
so has part: feature:985284-985368:1:exon
so has part: feature:988261-988421:1:exon
so has part: feature:989576-989797:1:exon
so has part: feature:991579-991716:1:exon
so has part: feature:992463-992639:1:exon
so has part: feature:993590-993703:1:exon
so has part: feature:994845-994952:1:exon
so has part: feature:997151-997273:1:exon
so has part: feature:997805-998020:1:exon
so has part: feature:1001093-1001200:1:exon
so has part: feature:1006812-1006897:1:exon
so has part: feature:1007706-1008027:1:exon
so has part: feature:1009142-1009348:1:exon
so has part: feature:1015274-1015445:1:exon
so has part: feature:1020389-1020534:1:exon
so has part: feature:1022969-1023134:1:exon
so has part: feature:1025792-1026031:1:exon
so has part: feature:1027765-1027955:1:exon
so has part: feature:1028043-1028127:1:exon
so has part: feature:1031152-1031285:1:exon
so has part: feature:1035592-1035793:1:exon
so has part: feature:1036540-1036775:1:exon
so has part: feature:1040245-1040463:1:exon
so has part: feature:1041491-1041553:1:exon
so has part: feature:1041842-1042080:1:exon
so has part: feature:1043243-1043483:1:exon
so has part: feature:1045634-1045833:1:exon
so has part: feature:1048716-1048869:1:exon
so has part: feature:1050938-1051101:1:exon
so has part: feature:1054118-1054274:1:exon
so has part: feature:1057749-1057961:1:exon
so has part: feature:1058737-1058961:1:exon
so has part: feature:1060338-1060510:1:exon
so has part: feature:1067296-1067474:1:exon
so has part: feature:1067861-1068048:1:exon
so has part: feature:1068381-1068575:1:exon
so has part: feature:1072359-1072493:1:exon
so has part: feature:1073569-1073676:1:exon
so has part: feature:1075198-1075351:1:exon
so has part: feature:1076481-1076627:1:exon
so has part: feature:1079016-1079257:1:exon
so has part: feature:1082699-1082875:1:exon
so has part: feature:1083292-1083493:1:exon
so has part: feature:1085401-1085543:1:exon
so has part: feature:1086167-1086301:1:exon
so has part: feature:1102005-1102127:1:exon
so has part: feature:1102316-1102529:1:exon
so has part: feature:1103838-1104061:1:exon
so has part: feature:1105840-1106038:1:exon
so has part: feature:1108629-1108801:1:exon
so has part: feature:1113391-1113521:1:exon
so has part: feature:1117071-1117224:1:exon
so has part: feature:1118387-1118654:1:exon
so has part: feature:1133658-1133889:1:exon
so has part: feature:1135040-1135154:1:exon
so has part: feature:1135390-1135566:1:exon
so has part: feature:1138550-1138753:1:exon
so has part: feature:1141247-1141426:1:exon
so has part: feature:1145158-1145295:1:exon
so has part: feature:1155424-1155559:1:exon
so has part: feature:1156113-1156429:1:exon
so has part: feature:1157001-1157156:1:exon
so has part: feature:1158064-1158246:1:exon
so has part: feature:1164987-1165230:1:exon

XP_038439232.1
type: Protein
SIO_000068: ncbiprotein

position:904355:1
position: 904355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1198139:1
position: 1198139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:904355-904366:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:978386-978520:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:985284-985368:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:988261-988421:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:989576-989797:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:991579-991716:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:992463-992639:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:993590-993703:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:994845-994952:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:997151-997273:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:997805-998020:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:1001093-1001200:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:1006812-1006897:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:1007706-1008027:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:1009142-1009348:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:1015274-1015445:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:1020389-1020534:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:1022969-1023134:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:1025792-1026031:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:1027765-1027955:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:1028043-1028127:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:1031152-1031285:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:1035592-1035793:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:1036540-1036775:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:1040245-1040463:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:1041491-1041553:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:1041842-1042080:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:1043243-1043483:1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:1045634-1045833:1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:1048716-1048869:1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:1050938-1051101:1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:1054118-1054274:1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:1057749-1057961:1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:1058737-1058961:1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:1060338-1060510:1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:1067296-1067474:1:exon

urn:…
SIO_000300: 37
SIO_000628: feature:1067861-1068048:1:exon

urn:…
SIO_000300: 38
SIO_000628: feature:1068381-1068575:1:exon

urn:…
SIO_000300: 39
SIO_000628: feature:1072359-1072493:1:exon

urn:…
SIO_000300: 40
SIO_000628: feature:1073569-1073676:1:exon

urn:…
SIO_000300: 41
SIO_000628: feature:1075198-1075351:1:exon

urn:…
SIO_000300: 42
SIO_000628: feature:1076481-1076627:1:exon

urn:…
SIO_000300: 43
SIO_000628: feature:1079016-1079257:1:exon

urn:…
SIO_000300: 44
SIO_000628: feature:1082699-1082875:1:exon

urn:…
SIO_000300: 45
SIO_000628: feature:1083292-1083493:1:exon

urn:…
SIO_000300: 46
SIO_000628: feature:1085401-1085543:1:exon

urn:…
SIO_000300: 47
SIO_000628: feature:1086167-1086301:1:exon

urn:…
SIO_000300: 48
SIO_000628: feature:1102005-1102127:1:exon

urn:…
SIO_000300: 49
SIO_000628: feature:1102316-1102529:1:exon

urn:…
SIO_000300: 50
SIO_000628: feature:1103838-1104061:1:exon

urn:…
SIO_000300: 51
SIO_000628: feature:1105840-1106038:1:exon

urn:…
SIO_000300: 52
SIO_000628: feature:1108629-1108801:1:exon

urn:…
SIO_000300: 53
SIO_000628: feature:1113391-1113521:1:exon

urn:…
SIO_000300: 54
SIO_000628: feature:1117071-1117224:1:exon

urn:…
SIO_000300: 55
SIO_000628: feature:1118387-1118654:1:exon

urn:…
SIO_000300: 56
SIO_000628: feature:1133658-1133889:1:exon

urn:…
SIO_000300: 57
SIO_000628: feature:1135040-1135154:1:exon

urn:…
SIO_000300: 58
SIO_000628: feature:1135390-1135566:1:exon

urn:…
SIO_000300: 59
SIO_000628: feature:1138550-1138753:1:exon

urn:…
SIO_000300: 60
SIO_000628: feature:1141247-1141426:1:exon

urn:…
SIO_000300: 61
SIO_000628: feature:1145158-1145295:1:exon

urn:…
SIO_000300: 62
SIO_000628: feature:1155424-1155559:1:exon

urn:…
SIO_000300: 63
SIO_000628: feature:1156113-1156429:1:exon

urn:…
SIO_000300: 64
SIO_000628: feature:1157001-1157156:1:exon

urn:…
SIO_000300: 65
SIO_000628: feature:1158064-1158246:1:exon

urn:…
SIO_000300: 66
SIO_000628: feature:1164987-1165230:1:exon

urn:…
SIO_000300: 67
SIO_000628: feature:1166418-1166532:1:exon

urn:…
SIO_000300: 68
SIO_000628: feature:1167022-1167212:1:exon

urn:…
SIO_000300: 69
SIO_000628: feature:1170228-1170349:1:exon

urn:…
SIO_000300: 70
SIO_000628: feature:1172125-1172274:1:exon

urn:…
SIO_000300: 71
SIO_000628: feature:1176490-1176735:1:exon

urn:…
SIO_000300: 72
SIO_000628: feature:1179791-1180010:1:exon

urn:…
SIO_000300: 73
SIO_000628: feature:1181158-1181363:1:exon

urn:…
SIO_000300: 74
SIO_000628: feature:1181959-1182162:1:exon

urn:…
SIO_000300: 75
SIO_000628: feature:1184381-1184596:1:exon

urn:…
SIO_000300: 76
SIO_000628: feature:1186175-1186387:1:exon

urn:…
SIO_000300: 77
SIO_000628: feature:1188969-1189121:1:exon

urn:…
SIO_000300: 78
SIO_000628: feature:1189531-1189762:1:exon

urn:…
SIO_000300: 79
SIO_000628: feature:1197988-1198139:1:exon

LOC606802
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC606802
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(1018697..1020109)
location: region:1018697-1020109:-1
so has part: feature:1018697-1020109:-1:exon

606802
type: Gene
SIO_000068: ncbigene

position:1018697:-1
position: 1018697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1020109:-1
position: 1020109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1018697-1020109:-1:exon

LOC606802
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC606802
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC606802
subclass of: SO_0000673
so part of: LOC606802
location: complement(1018697..1020109)
location: region:1018697-1020109:-1
so has part: feature:1018697-1020109:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1018697-1020109:-1:exon

LOC119867416
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1588675..1592748
location: region:1588675-1592748:1
so has part: feature:1588675-1592748:1:exon
subclass of: SO_0000011

119867416
type: Gene
SIO_000068: ncbigene

position:1588675:1
position: 1588675
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1592748:1
position: 1592748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1588675-1592748:1:exon

LOC119867416
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867416
product: uncharacterized LOC119867416, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005383483.1
SIO_010081: LOC119867416
subclass of: SO_0000673
so part of: LOC119867416
location: join(1588675..1588974,1589044..1589137,1592654..1592748)
location: region:1588675-1592748:1
so has part: feature:1588675-1588974:1:exon
so has part: feature:1589044-1589137:1:exon
so has part: feature:1592654-1592748:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1588675-1588974:1:exon

position:1588974:1
position: 1588974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1589044-1589137:1:exon

position:1589044:1
position: 1589044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1589137:1
position: 1589137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1592654-1592748:1:exon

position:1592654:1
position: 1592654
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119867416
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867416
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1621490..1625862
location: region:1621490-1625862:1
so has part: feature:1621490-1625862:1:exon
subclass of: SO_0000011

position:1621490:1
position: 1621490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1625862:1
position: 1625862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1621490-1625862:1:exon

LOC119867416
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867416
product: uncharacterized LOC119867416, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383484.1
SIO_010081: LOC119867416
subclass of: SO_0000673
so part of: LOC119867416
location: join(1621490..1621733,1623523..1623623,1625060..1625862)
location: region:1621490-1625862:1
so has part: feature:1621490-1621733:1:exon
so has part: feature:1623523-1623623:1:exon
so has part: feature:1625060-1625862:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1621490-1621733:1:exon

position:1621733:1
position: 1621733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1623523-1623623:1:exon

position:1623523:1
position: 1623523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1623623:1
position: 1623623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1625060-1625862:1:exon

position:1625060:1
position: 1625060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC111093893
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093893
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1725759..1742355
location: region:1725759-1742355:1
so has part: feature:1725759-1742355:1:exon
subclass of: SO_0000011

111093893
type: Gene
SIO_000068: ncbigene

position:1725759:1
position: 1725759
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1742355:1
position: 1742355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1725759-1742355:1:exon

LOC111093893
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093893
product: uncharacterized LOC111093893
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383485.1
SIO_010081: LOC111093893
subclass of: SO_0000673
so part of: LOC111093893
location: join(1725759..1726051,1731442..1731633,1735252..1735399,1742001..1742355)
location: region:1725759-1742355:1
so has part: feature:1725759-1726051:1:exon
so has part: feature:1731442-1731633:1:exon
so has part: feature:1735252-1735399:1:exon
so has part: feature:1742001-1742355:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1725759-1726051:1:exon

position:1726051:1
position: 1726051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1731442-1731633:1:exon

position:1731442:1
position: 1731442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1731633:1
position: 1731633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1735252-1735399:1:exon

position:1735252:1
position: 1735252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1735399:1
position: 1735399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1742001-1742355:1:exon

position:1742001:1
position: 1742001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC111093928
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093928
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1820388..1913117
location: region:1820388-1913117:1
so has part: feature:1820388-1913117:1:exon
subclass of: SO_0000011

111093928
type: Gene
SIO_000068: ncbigene

position:1820388:1
position: 1820388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1913117:1
position: 1913117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1820388-1913117:1:exon

LOC111093928
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093928
product: uncharacterized LOC111093928, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383636.1
SIO_010081: LOC111093928
subclass of: SO_0000673
so part of: LOC111093928
location: join(1820388..1821189,1903862..1903981,1911802..1911933,1912479..1913117)
location: region:1820388-1913117:1
so has part: feature:1820388-1821189:1:exon
so has part: feature:1903862-1903981:1:exon
so has part: feature:1911802-1911933:1:exon
so has part: feature:1912479-1913117:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1820388-1821189:1:exon

position:1821189:1
position: 1821189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1903862-1903981:1:exon

position:1903862:1
position: 1903862
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1903981:1
position: 1903981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:1911802-1911933:1:exon

position:1911802:1
position: 1911802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1911933:1
position: 1911933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1912479-1913117:1:exon

position:1912479:1
position: 1912479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC111093916
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093916
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1988051..2003636
location: region:1988051-2003636:1
so has part: feature:1988051-2003636:1:exon
subclass of: SO_0000011

111093916
type: Gene
SIO_000068: ncbigene

position:1988051:1
position: 1988051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2003636:1
position: 2003636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1988051-2003636:1:exon

LOC111093916
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093916
product: uncharacterized LOC111093916
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383486.1
SIO_010081: LOC111093916
subclass of: SO_0000673
so part of: LOC111093916
location: join(1988051..1988189,2003249..2003636)
location: region:1988051-2003636:1
so has part: feature:1988051-1988189:1:exon
so has part: feature:2003249-2003636:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1988051-1988189:1:exon

position:1988189:1
position: 1988189
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2003249-2003636:1:exon

position:2003249:1
position: 2003249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119867417
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867417
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 2354092..2354598
location: region:2354092-2354598:1
so has part: feature:2354092-2354598:1:exon

119867417
type: Gene
SIO_000068: ncbigene

position:2354092:1
position: 2354092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2354598:1
position: 2354598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2354092-2354598:1:exon

LOC119867417
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119867417
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 9 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119867417
subclass of: SO_0000673
so part of: LOC119867417
location: 2354092..2354598
location: region:2354092-2354598:1
so has part: feature:2354092-2354598:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2354092-2354598:1:exon

LOC102154585
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102154585
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2379217..2453380)
location: region:2379217-2453380:-1
so has part: feature:2379217-2453380:-1:exon
subclass of: SO_0000011

102154585
type: Gene
SIO_000068: ncbigene

position:2379217:-1
position: 2379217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2453380:-1
position: 2453380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2379217-2453380:-1:exon

LOC102154585
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154585
product: uncharacterized LOC102154585, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383637.1
SIO_010081: LOC102154585
subclass of: SO_0000673
so part of: LOC102154585
location: complement(join(2379217..2380470,2380910..2384436,2424858..2424998,2453266..2453380))
location: region:2379217-2453380:-1
so has part: feature:2453266-2453380:-1:exon
so has part: feature:2424858-2424998:-1:exon
so has part: feature:2380910-2384436:-1:exon
so has part: feature:2379217-2380470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2453266-2453380:-1:exon

position:2453266:-1
position: 2453266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2424858-2424998:-1:exon

position:2424858:-1
position: 2424858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2424998:-1
position: 2424998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2380910-2384436:-1:exon

position:2380910:-1
position: 2380910
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2384436:-1
position: 2384436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2379217-2380470:-1:exon

position:2380470:-1
position: 2380470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102154585
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154585
product: uncharacterized LOC102154585, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383638.1
SIO_010081: LOC102154585
subclass of: SO_0000673
so part of: LOC102154585
location: complement(join(2379217..2380470,2380910..2384436,2420431..2420479,2424858..2424998,2453266..2453380))
location: region:2379217-2453380:-1
so has part: feature:2453266-2453380:-1:exon
so has part: feature:2424858-2424998:-1:exon
so has part: feature:2420431-2420479:-1:exon
so has part: feature:2380910-2384436:-1:exon
so has part: feature:2379217-2380470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2453266-2453380:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2424858-2424998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2420431-2420479:-1:exon

position:2420431:-1
position: 2420431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2420479:-1
position: 2420479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2380910-2384436:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:2379217-2380470:-1:exon

LOC102154585
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154585
product: uncharacterized LOC102154585, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005383639.1
SIO_010081: LOC102154585
subclass of: SO_0000673
so part of: LOC102154585
location: complement(join(2379217..2380470,2380910..2384436,2411459..2411596,2412016..2412129,2420431..2420479,2424858..2424998,2453266..2453380))
location: region:2379217-2453380:-1
so has part: feature:2453266-2453380:-1:exon
so has part: feature:2424858-2424998:-1:exon
so has part: feature:2420431-2420479:-1:exon
so has part: feature:2412016-2412129:-1:exon
so has part: feature:2411459-2411596:-1:exon
so has part: feature:2380910-2384436:-1:exon
so has part: feature:2379217-2380470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2453266-2453380:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2424858-2424998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:2420431-2420479:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:2412016-2412129:-1:exon

position:2412016:-1
position: 2412016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2412129:-1
position: 2412129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:2411459-2411596:-1:exon

position:2411459:-1
position: 2411459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2411596:-1
position: 2411596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:2380910-2384436:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:2379217-2380470:-1:exon

LOC119867418
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867418
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(2639014..2656083)
location: region:2639014-2656083:-1
so has part: feature:2639014-2656083:-1:exon
subclass of: SO_0000011

119867418
type: Gene
SIO_000068: ncbigene

position:2639014:-1
position: 2639014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2656083:-1
position: 2656083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2639014-2656083:-1:exon

LOC119867418
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867418
product: uncharacterized LOC119867418
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383487.1
SIO_010081: LOC119867418
subclass of: SO_0000673
so part of: LOC119867418
location: complement(join(2639014..2639547,2639653..2639800,2651471..2651872,2655369..2656083))
location: region:2639014-2656083:-1
so has part: feature:2655369-2656083:-1:exon
so has part: feature:2651471-2651872:-1:exon
so has part: feature:2639653-2639800:-1:exon
so has part: feature:2639014-2639547:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2655369-2656083:-1:exon

position:2655369:-1
position: 2655369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2651471-2651872:-1:exon

position:2651471:-1
position: 2651471
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2651872:-1
position: 2651872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:2639653-2639800:-1:exon

position:2639653:-1
position: 2639653
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2639800:-1
position: 2639800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:2639014-2639547:-1:exon

position:2639547:-1
position: 2639547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CTNND2
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 2689314..3602824
location: region:2689314-3602824:1
so has part: feature:2689314-3602824:1:exon
subclass of: SO_0000010

488048
type: Gene
SIO_000068: ncbigene

position:2689314:1
position: 2689314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3602824:1
position: 3602824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2689314-3602824:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038583305.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2689314..2689547,2841614..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3500715..3500789,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2689314-3602824:1
so has part: feature:2689314-2689547:1:exon
so has part: feature:2841614-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3500715-3500789:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2689314-2689547:1:exon

position:2689547:1
position: 2689547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2841614-2841750:1:exon

position:2841614:1
position: 2841614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2841750:1
position: 2841750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

position:3025244:1
position: 3025244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3025356:1
position: 3025356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

position:3181367:1
position: 3181367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3181401:1
position: 3181401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

position:3181782:1
position: 3181782
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3181898:1
position: 3181898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

position:3196740:1
position: 3196740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3196918:1
position: 3196918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

position:3210983:1
position: 3210983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3211556:1
position: 3211556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

position:3233860:1
position: 3233860
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3234054:1
position: 3234054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

position:3244935:1
position: 3244935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3245187:1
position: 3245187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

position:3356824:1
position: 3356824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3356956:1
position: 3356956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

position:3389915:1
position: 3389915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3390128:1
position: 3390128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

position:3432660:1
position: 3432660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3432843:1
position: 3432843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

position:3468274:1
position: 3468274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3468391:1
position: 3468391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

position:3473539:1
position: 3473539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3473724:1
position: 3473724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

position:3487517:1
position: 3487517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3487690:1
position: 3487690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:3500715-3500789:1:exon

position:3500715:1
position: 3500715
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3500789:1
position: 3500789
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:3501842-3501992:1:exon

position:3501842:1
position: 3501842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3501992:1
position: 3501992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:3554113-3554323:1:exon

position:3554113:1
position: 3554113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3554323:1
position: 3554323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:3560171-3560255:1:exon

position:3560171:1
position: 3560171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3560255:1
position: 3560255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:3584698-3584824:1:exon

position:3584698:1
position: 3584698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3584824:1
position: 3584824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:3590301-3590432:1:exon

position:3590301:1
position: 3590301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3590432:1
position: 3590432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:3595851-3595924:1:exon

position:3595851:1
position: 3595851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3595924:1
position: 3595924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:3601644-3602824:1:exon

position:3601644:1
position: 3601644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038583308.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2689315..2689547,2841614..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2689315-3602824:1
so has part: feature:2689315-2689547:1:exon
so has part: feature:2841614-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

position:2689315:1
position: 2689315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2689315-2689547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2841614-2841750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X1
translation: MFSRKQSGAAPFGAMPVPDQPSSTSEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMAYALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2689511..2689547,2841614..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3500715..3500789,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:2689511-3601904:1
so has part: feature:2689511-2689547:1:exon
so has part: feature:2841614-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3500715-3500789:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439233.1
type: Protein
SIO_000068: ncbiprotein

position:2689511:1
position: 2689511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3601904:1
position: 3601904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2689511-2689547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2841614-2841750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3500715-3500789:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X3
translation: MFSRKQSGAAPFGAMPVPDQPSSTSEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2689511..2689547,2841614..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:2689511-3601904:1
so has part: feature:2689511-2689547:1:exon
so has part: feature:2841614-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439236.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2689511-2689547:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:2841614-2841750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038583306.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2689701..2689891,2841614..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3500715..3500789,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2689701-3602824:1
so has part: feature:2689701-2689891:1:exon
so has part: feature:2841614-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3500715-3500789:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

position:2689701:1
position: 2689701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2689701-2689891:1:exon

position:2689891:1
position: 2689891
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2841614-2841750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3500715-3500789:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3601644-3602824:1:exon

LOC102154278
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102154278
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <2769296..2771272
location: region:2769296-2771272:1
so has part: feature:2769296-2771272:1:exon
subclass of: SO_0000010

102154278
type: Gene
SIO_000068: ncbigene

position:2769296:1
position: 2769296
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2771272:1
position: 2771272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2769296-2771272:1:exon

LOC102154278
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC102154278
product: developmental pluripotency-associated protein 4-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038583290.1
SIO_010081: LOC102154278
subclass of: SO_0000673
so part of: LOC102154278
location: <2769296..2771272
location: region:2769296-2771272:1
so has part: feature:2769296-2771272:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2769296-2771272:1:exon

LOC102154278
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC102154278
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: developmental pluripotency-associated protein 4-like isoform X1
translation: TKVTRNLSKWDQTEEIYKRRQSFLFRKDGTREYKSKNSKEIPVPPLPLKLPPANLLHQDILWAWCQELQLSTKGQKLDVYKRTCEYAYPDQKKNFPVTSEEPKILTQTQRRLMMDKGEMSLESPGTKIPSDGTYPPEVAAPPEGSDALLEVVNTVVVTTLAPDSMFASWSRIAARAGKMETVASPQEAHGAKWCVVHGRSMPAGTEGWVHLQFHAGQTWVPEKRGRVCALFLLPACNFPPPQLEDNMLCPKCVRRNKVLMKSLQ
SIO_010081: LOC102154278
subclass of: SO_0000673
so part of: LOC102154278
location: <2769296..2770090
location: region:2769296-2770090:1
so has part: feature:2769296-2770090:1:exon

XP_038439218.1
type: Protein
SIO_000068: ncbiprotein

position:2770090:1
position: 2770090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2769296-2770090:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038583307.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2832635..2832655,2841614..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3500715..3500789,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2832635-3602824:1
so has part: feature:2832635-2832655:1:exon
so has part: feature:2841614-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3500715-3500789:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

position:2832635:1
position: 2832635
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2832635-2832655:1:exon

position:2832655:1
position: 2832655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:2841614-2841750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3500715-3500789:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X2
translation: MPVPDQPSSTSEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMAYALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2841619..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3500715..3500789,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:2841619-3601904:1
so has part: feature:2841619-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3500715-3500789:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439234.1
type: Protein
SIO_000068: ncbiprotein

position:2841619:1
position: 2841619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2841619-2841750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3500715-3500789:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X2
translation: MPVPDQPSSTSEKTSSLSPGLTTSNGDGSETETTSAILASVKEQELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKGWAEDVAGMAYALRSLPEGAPCLPQWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2841619..2841750,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3500715..3500789,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:2841619-3601904:1
so has part: feature:2841619-2841750:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3500715-3500789:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439235.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2841619-2841750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3500715-3500789:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_038583313.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2841717..2841750,3001132..3001193,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2841717-3602824:1
so has part: feature:2841717-2841750:1:exon
so has part: feature:3001132-3001193:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

position:2841717:1
position: 2841717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2841717-2841750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3001132-3001193:1:exon

position:3001132:1
position: 3001132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3001193:1
position: 3001193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_038583310.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2841733..2841750,3001132..3001227,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2841733-3602824:1
so has part: feature:2841733-2841750:1:exon
so has part: feature:3001132-3001227:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

position:2841733:1
position: 2841733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2841733-2841750:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3001132-3001227:1:exon

position:3001227:1
position: 3001227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038583309.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2992966..2993298,3001132..3001227,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2992966-3602824:1
so has part: feature:2992966-2993298:1:exon
so has part: feature:3001132-3001227:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

position:2992966:1
position: 2992966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2992966-2993298:1:exon

position:2993298:1
position: 2993298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3001132-3001227:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_038583312.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2992966..2993298,3001132..3001193,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2992966-3602824:1
so has part: feature:2992966-2993298:1:exon
so has part: feature:3001132-3001193:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2992966-2993298:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3001132-3001193:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CTNND2
product: catenin delta 2, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_038583311.1
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(2992966..2993298,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3602824)
location: region:2992966-3602824:1
so has part: feature:2992966-2993298:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3602824:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2992966-2993298:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3601644-3602824:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X4
translation: MPLELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(3001219..3001227,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:3001219-3601904:1
so has part: feature:3001219-3001227:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439237.1
type: Protein
SIO_000068: ncbiprotein

position:3001219:1
position: 3001219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3001219-3001227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X4
translation: MPLELQFERLTRELEAERQIVASQLERCKLGSETGSMSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(3001219..3001227,3025244..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:3001219-3601904:1
so has part: feature:3001219-3001227:1:exon
so has part: feature:3025244-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439238.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3001219-3001227:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3025244-3025356:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X5
translation: MSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(3025343..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:3025343-3601904:1
so has part: feature:3025343-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439239.1
type: Protein
SIO_000068: ncbiprotein

position:3025343:1
position: 3025343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3025343-3025356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X5
translation: MSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(3025343..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:3025343-3601904:1
so has part: feature:3025343-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439240.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3025343-3025356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3601644-3601904:1:exon

CTNND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CTNND2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: catenin delta-2 isoform X5
translation: MSSISSAEEQFHWQSQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQDYSTGERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGETAPSQLPARGAQARGAGAGQSFSQGTSSRAAHLAGPEPAPPPPPPPREPFAPSLGSAFHLPDAPPAAAAAAAAALYYSSSTLPAPPRGGSPLAAPQGGSPTKLQRGGSAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIGTYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLGPELRALQSPEHHIDPIYEDRVYQKPPMRSLSQSQGDPLPPAHSGTYRQSTAPSSPGVDPGPLQRAGSQHGPQSASAAFQRASFAAGPASSYADPYRQLQYCPSVESPYSKSGPALPPEGTLARSPSVDSIQKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKNCGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDTLAVLTNAVIIPHSGWENSPLQDDRKIQLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYRLAAETSQGQHMGTDELDGLLCGEANGKDAESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHPSIVKPYLTLLSECSNADTLEGAAGALQNLAAGSWKWSVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNAASKAMSDDTVTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKDGWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESTGSNATYHGTKGEHASRKDAMTAQNTGISTLYRNSYGAPAEDIKHNQVPAQPVPQEPSRKDYETYQPFQNSTRNYDESFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV
SIO_010081: CTNND2
subclass of: SO_0000673
so part of: CTNND2
location: join(3025343..3025356,3181367..3181401,3181782..3181898,3196740..3196918,3210983..3211556,3233860..3234054,3244935..3245187,3356824..3356956,3389915..3390128,3432660..3432843,3468274..3468391,3473539..3473724,3487517..3487690,3501842..3501992,3554113..3554323,3560171..3560255,3584698..3584824,3590301..3590432,3595851..3595924,3601644..3601904)
location: region:3025343-3601904:1
so has part: feature:3025343-3025356:1:exon
so has part: feature:3181367-3181401:1:exon
so has part: feature:3181782-3181898:1:exon
so has part: feature:3196740-3196918:1:exon
so has part: feature:3210983-3211556:1:exon
so has part: feature:3233860-3234054:1:exon
so has part: feature:3244935-3245187:1:exon
so has part: feature:3356824-3356956:1:exon
so has part: feature:3389915-3390128:1:exon
so has part: feature:3432660-3432843:1:exon
so has part: feature:3468274-3468391:1:exon
so has part: feature:3473539-3473724:1:exon
so has part: feature:3487517-3487690:1:exon
so has part: feature:3501842-3501992:1:exon
so has part: feature:3554113-3554323:1:exon
so has part: feature:3560171-3560255:1:exon
so has part: feature:3584698-3584824:1:exon
so has part: feature:3590301-3590432:1:exon
so has part: feature:3595851-3595924:1:exon
so has part: feature:3601644-3601904:1:exon

XP_038439241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3025343-3025356:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3181367-3181401:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3181782-3181898:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3196740-3196918:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3210983-3211556:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3233860-3234054:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3244935-3245187:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3356824-3356956:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3389915-3390128:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3432660-3432843:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3468274-3468391:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3473539-3473724:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:3487517-3487690:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:3501842-3501992:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3554113-3554323:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:3560171-3560255:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:3584698-3584824:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:3590301-3590432:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:3595851-3595924:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:3601644-3601904:1:exon

LOC119867467
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867467
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3159848..3165186)
location: region:3159848-3165186:-1
so has part: feature:3159848-3165186:-1:exon
subclass of: SO_0000011

119867467
type: Gene
SIO_000068: ncbigene

position:3159848:-1
position: 3159848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3165186:-1
position: 3165186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3159848-3165186:-1:exon

LOC119867467
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867467
product: uncharacterized LOC119867467
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383656.1
SIO_010081: LOC119867467
subclass of: SO_0000673
so part of: LOC119867467
location: complement(join(3159848..3160726,3161286..3161411,3164974..3165186))
location: region:3159848-3165186:-1
so has part: feature:3164974-3165186:-1:exon
so has part: feature:3161286-3161411:-1:exon
so has part: feature:3159848-3160726:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3164974-3165186:-1:exon

position:3164974:-1
position: 3164974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3161286-3161411:-1:exon

position:3161286:-1
position: 3161286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3161411:-1
position: 3161411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3159848-3160726:-1:exon

position:3160726:-1
position: 3160726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102154851
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102154851
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3283770..3335606)
location: region:3283770-3335606:-1
so has part: feature:3283770-3335606:-1:exon
subclass of: SO_0000011

102154851
type: Gene
SIO_000068: ncbigene

position:3283770:-1
position: 3283770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3335606:-1
position: 3335606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3283770-3335606:-1:exon

LOC102154851
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154851
product: uncharacterized LOC102154851, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383655.1
SIO_010081: LOC102154851
subclass of: SO_0000673
so part of: LOC102154851
location: complement(join(3283770..3284093,3297012..3297066,3299920..3299964,3300391..3300526,3300792..3300915,3313031..3313162,3335376..3335606))
location: region:3283770-3335606:-1
so has part: feature:3335376-3335606:-1:exon
so has part: feature:3313031-3313162:-1:exon
so has part: feature:3300792-3300915:-1:exon
so has part: feature:3300391-3300526:-1:exon
so has part: feature:3299920-3299964:-1:exon
so has part: feature:3297012-3297066:-1:exon
so has part: feature:3283770-3284093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3335376-3335606:-1:exon

position:3335376:-1
position: 3335376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3313031-3313162:-1:exon

position:3313031:-1
position: 3313031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3313162:-1
position: 3313162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3300792-3300915:-1:exon

position:3300792:-1
position: 3300792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3300915:-1
position: 3300915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3300391-3300526:-1:exon

position:3300391:-1
position: 3300391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3300526:-1
position: 3300526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3299920-3299964:-1:exon

position:3299920:-1
position: 3299920
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3299964:-1
position: 3299964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3297012-3297066:-1:exon

position:3297012:-1
position: 3297012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3297066:-1
position: 3297066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3283770-3284093:-1:exon

position:3284093:-1
position: 3284093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102154851
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154851
product: uncharacterized LOC102154851, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383654.1
SIO_010081: LOC102154851
subclass of: SO_0000673
so part of: LOC102154851
location: complement(join(3283770..3284093,3297012..3297066,3299920..3299964,3300391..3300526,3313031..3313162,3313298..3313379,3335376..3335606))
location: region:3283770-3335606:-1
so has part: feature:3335376-3335606:-1:exon
so has part: feature:3313298-3313379:-1:exon
so has part: feature:3313031-3313162:-1:exon
so has part: feature:3300391-3300526:-1:exon
so has part: feature:3299920-3299964:-1:exon
so has part: feature:3297012-3297066:-1:exon
so has part: feature:3283770-3284093:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3335376-3335606:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3313298-3313379:-1:exon

position:3313298:-1
position: 3313298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3313379:-1
position: 3313379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3313031-3313162:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3300391-3300526:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3299920-3299964:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3297012-3297066:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3283770-3284093:-1:exon

LOC102154851
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154851
product: uncharacterized LOC102154851, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383653.1
SIO_010081: LOC102154851
subclass of: SO_0000673
so part of: LOC102154851
location: complement(join(3283771..3284093,3297012..3297066,3299920..3299964,3300391..3300526,3313031..3313162,3335376..3335606))
location: region:3283771-3335606:-1
so has part: feature:3335376-3335606:-1:exon
so has part: feature:3313031-3313162:-1:exon
so has part: feature:3300391-3300526:-1:exon
so has part: feature:3299920-3299964:-1:exon
so has part: feature:3297012-3297066:-1:exon
so has part: feature:3283771-3284093:-1:exon

position:3283771:-1
position: 3283771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3335376-3335606:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3313031-3313162:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3300391-3300526:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3299920-3299964:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3297012-3297066:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3283771-3284093:-1:exon

LOC102154640
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102154640
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3503709..3561318)
location: region:3503709-3561318:-1
so has part: feature:3503709-3561318:-1:exon
subclass of: SO_0000011

102154640
type: Gene
SIO_000068: ncbigene

position:3503709:-1
position: 3503709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3561318:-1
position: 3561318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3503709-3561318:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383651.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560946..3561318))
location: region:3503709-3561318:-1
so has part: feature:3560946-3561318:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560946-3561318:-1:exon

position:3560946:-1
position: 3560946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

position:3559818:-1
position: 3559818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3560037:-1
position: 3560037
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

position:3550640:-1
position: 3550640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3550788:-1
position: 3550788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

position:3550233:-1
position: 3550233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3550371:-1
position: 3550371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

position:3525445:-1
position: 3525445
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3525712:-1
position: 3525712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

position:3523866:-1
position: 3523866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3523987:-1
position: 3523987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

position:3521817:-1
position: 3521817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3521900:-1
position: 3521900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3516466-3517349:-1:exon

position:3516466:-1
position: 3516466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3517349:-1
position: 3517349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3507755-3510430:-1:exon

position:3507755:-1
position: 3507755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3510430:-1
position: 3510430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:3506988-3507157:-1:exon

position:3506988:-1
position: 3506988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3507157:-1
position: 3507157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:3503709-3503996:-1:exon

position:3503996:-1
position: 3503996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383647.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

position:3560298:-1
position: 3560298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

position:3560143:-1
position: 3560143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005383652.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383648.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525707,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525707:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525707:-1:exon

position:3525707:-1
position: 3525707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383646.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3516638,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3516466-3516638:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3516466-3516638:-1:exon

position:3516638:-1
position: 3516638
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383641.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383643.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3516638,3517135..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3517135-3517349:-1:exon
so has part: feature:3516466-3516638:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3517135-3517349:-1:exon

position:3517135:-1
position: 3517135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3516466-3516638:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005383644.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3516638,3516966..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516966-3517349:-1:exon
so has part: feature:3516466-3516638:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3516966-3517349:-1:exon

position:3516966:-1
position: 3516966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:3516466-3516638:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383649.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383650.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383640.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X24
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XR_005383645.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3551208..3551291,3559818..3560037,3560143..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560143-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3551208-3551291:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560143-3560298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3551208-3551291:-1:exon

position:3551208:-1
position: 3551208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3551291:-1
position: 3551291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:3503709-3503996:-1:exon

LOC102154640
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102154640
product: uncharacterized LOC102154640, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383642.1
SIO_010081: LOC102154640
subclass of: SO_0000673
so part of: LOC102154640
location: complement(join(3503709..3503996,3506988..3507157,3507755..3510430,3516466..3517349,3521817..3521900,3523866..3523987,3525445..3525712,3550233..3550371,3550640..3550788,3559818..3560037,3560140..3560298))
location: region:3503709-3560298:-1
so has part: feature:3560140-3560298:-1:exon
so has part: feature:3559818-3560037:-1:exon
so has part: feature:3550640-3550788:-1:exon
so has part: feature:3550233-3550371:-1:exon
so has part: feature:3525445-3525712:-1:exon
so has part: feature:3523866-3523987:-1:exon
so has part: feature:3521817-3521900:-1:exon
so has part: feature:3516466-3517349:-1:exon
so has part: feature:3507755-3510430:-1:exon
so has part: feature:3506988-3507157:-1:exon
so has part: feature:3503709-3503996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3560140-3560298:-1:exon

position:3560140:-1
position: 3560140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3559818-3560037:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3550640-3550788:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3550233-3550371:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3525445-3525712:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3523866-3523987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:3521817-3521900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:3516466-3517349:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:3507755-3510430:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:3506988-3507157:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:3503709-3503996:-1:exon

LOC119867544
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867544
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 3747949..3748055
location: region:3747949-3748055:1
so has part: feature:3747949-3748055:1:exon
subclass of: SO_0000623

119867544
type: Gene
SIO_000068: ncbigene

position:3747949:1
position: 3747949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3748055:1
position: 3748055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3747949-3748055:1:exon

LOC119867544
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: snRNA
gene: LOC119867544
product: U6 spliceosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005384063.1
SIO_010081: LOC119867544
subclass of: SO_0000673
so part of: LOC119867544
location: 3747949..3748055
location: region:3747949-3748055:1
so has part: feature:3747949-3748055:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3747949-3748055:1:exon

LOC111093891
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093891
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3750545..3765528
location: region:3750545-3765528:1
so has part: feature:3750545-3765528:1:exon
subclass of: SO_0000011

111093891
type: Gene
SIO_000068: ncbigene

position:3750545:1
position: 3750545
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3765528:1
position: 3765528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3750545-3765528:1:exon

LOC111093891
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093891
product: uncharacterized LOC111093891
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383657.1
SIO_010081: LOC111093891
subclass of: SO_0000673
so part of: LOC111093891
location: join(3750545..3750662,3763012..3765528)
location: region:3750545-3765528:1
so has part: feature:3750545-3750662:1:exon
so has part: feature:3763012-3765528:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3750545-3750662:1:exon

position:3750662:1
position: 3750662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3763012-3765528:1:exon

position:3763012:1
position: 3763012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC607300
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC607300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3781767..3847273
location: region:3781767-3847273:1
so has part: feature:3781767-3847273:1:exon
subclass of: SO_0000010

607300
type: Gene
SIO_000068: ncbigene

position:3781767:1
position: 3781767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3847273:1
position: 3847273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781767-3847273:1:exon

LOC607300
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC607300
product: death associated protein, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583314.1
SIO_010081: LOC607300
subclass of: SO_0000673
so part of: LOC607300
location: join(3781767..3781940,3793830..3793926,3843832..3843874,3845384..3847273)
location: region:3781767-3847273:1
so has part: feature:3781767-3781940:1:exon
so has part: feature:3793830-3793926:1:exon
so has part: feature:3843832-3843874:1:exon
so has part: feature:3845384-3847273:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3781767-3781940:1:exon

position:3781940:1
position: 3781940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3793830-3793926:1:exon

position:3793830:1
position: 3793830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3793926:1
position: 3793926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3843832-3843874:1:exon

position:3843832:1
position: 3843832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3843874:1
position: 3843874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3845384-3847273:1:exon

position:3845384:1
position: 3845384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC607300
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC607300
product: death associated protein, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038583315.1
SIO_010081: LOC607300
subclass of: SO_0000673
so part of: LOC607300
location: join(3781767..3781940,3793830..3793926,3810167..3810200,3843832..3843874,3845384..3845469)
location: region:3781767-3845469:1
so has part: feature:3781767-3781940:1:exon
so has part: feature:3793830-3793926:1:exon
so has part: feature:3810167-3810200:1:exon
so has part: feature:3843832-3843874:1:exon
so has part: feature:3845384-3845469:1:exon

position:3845469:1
position: 3845469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781767-3781940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3793830-3793926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3810167-3810200:1:exon

position:3810167:1
position: 3810167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3810200:1
position: 3810200
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3843832-3843874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3845384-3845469:1:exon

LOC607300
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC607300
product: death associated protein, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_038583316.1
SIO_010081: LOC607300
subclass of: SO_0000673
so part of: LOC607300
location: join(3781767..3781940,3793830..3793926,3810167..3810200,3843832..3843874,3845294..3845419)
location: region:3781767-3845419:1
so has part: feature:3781767-3781940:1:exon
so has part: feature:3793830-3793926:1:exon
so has part: feature:3810167-3810200:1:exon
so has part: feature:3843832-3843874:1:exon
so has part: feature:3845294-3845419:1:exon

position:3845419:1
position: 3845419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781767-3781940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3793830-3793926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3810167-3810200:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3843832-3843874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3845294-3845419:1:exon

position:3845294:1
position: 3845294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC607300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC607300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein 1 isoform X1
translation: MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTKEERDKDDQEWESPSPPKPTVFISGVIARGDKDFPPAAAQVAHQKPHASIDKHPSPRTQHIQQPRK
SIO_010081: LOC607300
subclass of: SO_0000673
so part of: LOC607300
location: join(3781886..3781940,3793830..3793926,3843832..3843874,3845384..3845497)
location: region:3781886-3845497:1
so has part: feature:3781886-3781940:1:exon
so has part: feature:3793830-3793926:1:exon
so has part: feature:3843832-3843874:1:exon
so has part: feature:3845384-3845497:1:exon

XP_038439242.1
type: Protein
SIO_000068: ncbiprotein

position:3781886:1
position: 3781886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3845497:1
position: 3845497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781886-3781940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3793830-3793926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3843832-3843874:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3845384-3845497:1:exon

LOC607300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC607300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein 1 isoform X2
translation: MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTKEERDKDDQEWESPRGPWRQRLARPQPPQADRVHLRSDRPGRQRLPTSSRPGGSPEAPRLH
SIO_010081: LOC607300
subclass of: SO_0000673
so part of: LOC607300
location: join(3781886..3781940,3793830..3793926,3810167..3810200,3843832..3843874,3845384..3845448)
location: region:3781886-3845448:1
so has part: feature:3781886-3781940:1:exon
so has part: feature:3793830-3793926:1:exon
so has part: feature:3810167-3810200:1:exon
so has part: feature:3843832-3843874:1:exon
so has part: feature:3845384-3845448:1:exon

XP_038439243.1
type: Protein
SIO_000068: ncbiprotein

position:3845448:1
position: 3845448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781886-3781940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3793830-3793926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3810167-3810200:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3843832-3843874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3845384-3845448:1:exon

LOC607300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC607300
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: death-associated protein 1 isoform X3
translation: MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHSGDTKEERDKDDQEWESPRGPWRQRLARPQPPQADRVHLRSDRPGKPVDRALGTLPSCHRAVRG
SIO_010081: LOC607300
subclass of: SO_0000673
so part of: LOC607300
location: join(3781886..3781940,3793830..3793926,3810167..3810200,3843832..3843874,3845294..3845355)
location: region:3781886-3845355:1
so has part: feature:3781886-3781940:1:exon
so has part: feature:3793830-3793926:1:exon
so has part: feature:3810167-3810200:1:exon
so has part: feature:3843832-3843874:1:exon
so has part: feature:3845294-3845355:1:exon

XP_038439244.1
type: Protein
SIO_000068: ncbiprotein

position:3845355:1
position: 3845355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3781886-3781940:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3793830-3793926:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3810167-3810200:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3843832-3843874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:3845294-3845355:1:exon

LOC119867468
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867468
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3803357..3858973)
location: region:3803357-3858973:-1
so has part: feature:3803357-3858973:-1:exon
subclass of: SO_0000011

119867468
type: Gene
SIO_000068: ncbigene

position:3803357:-1
position: 3803357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3858973:-1
position: 3858973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3803357-3858973:-1:exon

LOC119867468
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867468
product: uncharacterized LOC119867468
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383658.1
SIO_010081: LOC119867468
subclass of: SO_0000673
so part of: LOC119867468
location: complement(join(3803357..3808013,3819403..3819460,3857797..3858973))
location: region:3803357-3858973:-1
so has part: feature:3857797-3858973:-1:exon
so has part: feature:3819403-3819460:-1:exon
so has part: feature:3803357-3808013:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3857797-3858973:-1:exon

position:3857797:-1
position: 3857797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3819403-3819460:-1:exon

position:3819403:-1
position: 3819403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3819460:-1
position: 3819460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3803357-3808013:-1:exon

position:3808013:-1
position: 3808013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ANKRD33B
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: ANKRD33B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3863692..3945438)
location: region:3863692-3945438:-1
so has part: feature:3863692-3945438:-1:exon
subclass of: SO_0000010

488049
type: Gene
SIO_000068: ncbigene

position:3863692:-1
position: 3863692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3945438:-1
position: 3945438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3863692-3945438:-1:exon

ANKRD33B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: ANKRD33B
product: ankyrin repeat domain 33B, transcript variant X11
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XR_005383659.1
SIO_010081: ANKRD33B
so part of: ANKRD33B
location: complement(join(3863692..3866918,3867773..3870442,3879133..3879273,3897223..3897352,3945078..3945438))
location: region:3863692-3945438:-1
so has part: feature:3945078-3945438:-1:exon
so has part: feature:3897223-3897352:-1:exon
so has part: feature:3879133-3879273:-1:exon
so has part: feature:3867773-3870442:-1:exon
so has part: feature:3863692-3866918:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3945078-3945438:-1:exon

position:3945078:-1
position: 3945078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3897223-3897352:-1:exon

position:3897223:-1
position: 3897223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3897352:-1
position: 3897352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3879133-3879273:-1:exon

position:3879133:-1
position: 3879133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3879273:-1
position: 3879273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:3867773-3870442:-1:exon

position:3867773:-1
position: 3867773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3870442:-1
position: 3870442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3863692-3866918:-1:exon

position:3866918:-1
position: 3866918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ANKRD33B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: ANKRD33B
product: ankyrin repeat domain 33B, transcript variant X13
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_005383661.1
SIO_010081: ANKRD33B
so part of: ANKRD33B
location: complement(join(3863692..3865825,3865999..3870442,3879133..3879273,3897223..3897352,3945078..3945438))
location: region:3863692-3945438:-1
so has part: feature:3945078-3945438:-1:exon
so has part: feature:3897223-3897352:-1:exon
so has part: feature:3879133-3879273:-1:exon
so has part: feature:3865999-3870442:-1:exon
so has part: feature:3863692-3865825:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3945078-3945438:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3897223-3897352:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3879133-3879273:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3865999-3870442:-1:exon

position:3865999:-1
position: 3865999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3863692-3865825:-1:exon

position:3865825:-1
position: 3865825
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ANKRD33B
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: ANKRD33B
product: ankyrin repeat domain 33B, transcript variant X12
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XR_005383660.1
SIO_010081: ANKRD33B
so part of: ANKRD33B
location: complement(join(3863692..3865825,3865990..3870442,3879133..3879273,3897223..3897352,3945078..3945438))
location: region:3863692-3945438:-1
so has part: feature:3945078-3945438:-1:exon
so has part: feature:3897223-3897352:-1:exon
so has part: feature:3879133-3879273:-1:exon
so has part: feature:3865990-3870442:-1:exon
so has part: feature:3863692-3865825:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3945078-3945438:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3897223-3897352:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3879133-3879273:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3865990-3870442:-1:exon

position:3865990:-1
position: 3865990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:3863692-3865825:-1:exon

ANKRD33B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: ANKRD33B
product: ankyrin repeat domain 33B, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_038583317.1
SIO_010081: ANKRD33B
subclass of: SO_0000673
so part of: ANKRD33B
location: complement(join(3863692..3870442,3879133..3879273,3897223..3897352,3945078..3945438))
location: region:3863692-3945438:-1
so has part: feature:3945078-3945438:-1:exon
so has part: feature:3897223-3897352:-1:exon
so has part: feature:3879133-3879273:-1:exon
so has part: feature:3863692-3870442:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3945078-3945438:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3897223-3897352:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3879133-3879273:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3863692-3870442:-1:exon

ANKRD33B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: ANKRD33B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ankyrin repeat domain-containing protein 33B isoform X2
translation: MVLLAGPGPEGGGARRVSPQTPSPPRDAQAGEDPADYEEYEDFSCLPDTRSIASDDSFYPLGGEEEHGTASAESVPEGVPEEATLLRAACANDVGLLRALVRRGPSVEEVQETDRNGRTGLIVACYHGFVDTVVVLAECPHVDVNWQDKEGNTALITAAQAGHVTITNYLLNYFPGLDLERRNVFGFTALMKAAMQGRTECIRALMLAGADVHARDPRRGMAPQEWAAYTGRLEAVRLIQRLLERPCPEQFGERYKPELPLPAEAVLKPSGSKSCLQRLAELVRATLTSRSRQGPEDGGVLDHMVRMTTSLYSPAVAIVCQTVCPEDAPCVGKRRLAVQEILEARGSRDTRAQEGDKIEGPEPPFRTSRAVGVSREGAPRAGLPSPQQPGAPRRASLLPLQLLRRSSVRPGVVIPRVRISKAPAPTFQPERAAARGSTKDSAHLQLPKWRYKEAKEEKRRAAAQKDKRAPSWRKRT
SIO_010081: ANKRD33B
subclass of: SO_0000673
so part of: ANKRD33B
location: complement(join(3869637..3870442,3879133..3879273,3897223..3897352,3945078..3945431))
location: region:3869637-3945431:-1
so has part: feature:3945078-3945431:-1:exon
so has part: feature:3897223-3897352:-1:exon
so has part: feature:3879133-3879273:-1:exon
so has part: feature:3869637-3870442:-1:exon

XP_038439245.1
type: Protein
SIO_000068: ncbiprotein

position:3869637:-1
position: 3869637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3945431:-1
position: 3945431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3945078-3945431:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3897223-3897352:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:3879133-3879273:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:3869637-3870442:-1:exon

LOC119867564
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867564
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
so part of: sequence
location: complement(3884924..3885021)
location: region:3884924-3885021:-1
so has part: feature:3884924-3885021:-1:exon

119867564
type: Gene
SIO_000068: ncbigene

position:3884924:-1
position: 3884924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3885021:-1
position: 3885021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3884924-3885021:-1:exon

LOC119867564
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119867564
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00026
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
pseudo: true
SIO_010081: LOC119867564
subclass of: SO_0000673
so part of: LOC119867564
location: complement(3884924..3885021)
location: region:3884924-3885021:-1
so has part: feature:3884924-3885021:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3884924-3885021:-1:exon

LOC106558190
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC106558190
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3931202..3932814
location: region:3931202-3932814:1
so has part: feature:3931202-3932814:1:exon
subclass of: SO_0000011

106558190
type: Gene
SIO_000068: ncbigene

position:3931202:1
position: 3931202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3932814:1
position: 3932814
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3931202-3932814:1:exon

LOC106558190
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC106558190
product: uncharacterized LOC106558190
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XR_005383662.1
SIO_010081: LOC106558190
subclass of: SO_0000673
so part of: LOC106558190
location: join(3931202..3931673,3932640..3932814)
location: region:3931202-3932814:1
so has part: feature:3931202-3931673:1:exon
so has part: feature:3932640-3932814:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3931202-3931673:1:exon

position:3931673:1
position: 3931673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3932640-3932814:1:exon

position:3932640:1
position: 3932640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102155183
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102155183
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 3972361..3979223
location: region:3972361-3979223:1
so has part: feature:3972361-3979223:1:exon
subclass of: SO_0000011

102155183
type: Gene
SIO_000068: ncbigene

position:3972361:1
position: 3972361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3979223:1
position: 3979223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3972361-3979223:1:exon

LOC102155183
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102155183
product: uncharacterized LOC102155183, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383488.1
SIO_010081: LOC102155183
subclass of: SO_0000673
so part of: LOC102155183
location: join(3972361..3972498,3975400..3975619,3975729..3979223)
location: region:3972361-3979223:1
so has part: feature:3972361-3972498:1:exon
so has part: feature:3975400-3975619:1:exon
so has part: feature:3975729-3979223:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3972361-3972498:1:exon

position:3972498:1
position: 3972498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3975400-3975619:1:exon

position:3975400:1
position: 3975400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3975619:1
position: 3975619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:3975729-3979223:1:exon

position:3975729:1
position: 3975729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102155232
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102155232
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4001812..4003630)
location: region:4001812-4003630:-1
so has part: feature:4001812-4003630:-1:exon
subclass of: SO_0000011

102155232
type: Gene
SIO_000068: ncbigene

position:4001812:-1
position: 4001812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4003630:-1
position: 4003630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4001812-4003630:-1:exon

LOC102155232
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102155232
product: uncharacterized LOC102155232
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
transcript id: XR_005383489.1
SIO_010081: LOC102155232
subclass of: SO_0000673
so part of: LOC102155232
location: complement(join(4001812..4002331,4003474..4003630))
location: region:4001812-4003630:-1
so has part: feature:4003474-4003630:-1:exon
so has part: feature:4001812-4002331:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4003474-4003630:-1:exon

position:4003474:-1
position: 4003474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4001812-4002331:-1:exon

position:4002331:-1
position: 4002331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ROPN1L
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: ROPN1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4021371..4038833)
location: region:4021371-4038833:-1
so has part: feature:4021371-4038833:-1:exon
subclass of: SO_0000010

478616
type: Gene
SIO_000068: ncbigene

position:4021371:-1
position: 4021371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4038833:-1
position: 4038833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4021371-4038833:-1:exon

ROPN1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: ROPN1L
product: rhophilin associated tail protein 1 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_038583324.1
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: complement(join(4021371..4021552,4025446..4025621,4032502..4032663,4034291..4034414,4038369..4038522,4038674..4038832))
location: region:4021371-4038832:-1
so has part: feature:4038674-4038832:-1:exon
so has part: feature:4038369-4038522:-1:exon
so has part: feature:4034291-4034414:-1:exon
so has part: feature:4032502-4032663:-1:exon
so has part: feature:4025446-4025621:-1:exon
so has part: feature:4021371-4021552:-1:exon

position:4038832:-1
position: 4038832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4038674-4038832:-1:exon

position:4038674:-1
position: 4038674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4038369-4038522:-1:exon

position:4038369:-1
position: 4038369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4038522:-1
position: 4038522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4034291-4034414:-1:exon

position:4034291:-1
position: 4034291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4034414:-1
position: 4034414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4032502-4032663:-1:exon

position:4032502:-1
position: 4032502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4032663:-1
position: 4032663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4025446-4025621:-1:exon

position:4025446:-1
position: 4025446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4025621:-1
position: 4025621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4021371-4021552:-1:exon

position:4021552:-1
position: 4021552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ROPN1L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: ROPN1L
product: rhophilin associated tail protein 1 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_038583323.1
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: complement(join(4021434..4021552,4022362..4022506,4025446..4025621,4032502..4032663,4034291..4034414,4038369..4038522,4038674..4038833))
location: region:4021434-4038833:-1
so has part: feature:4038674-4038833:-1:exon
so has part: feature:4038369-4038522:-1:exon
so has part: feature:4034291-4034414:-1:exon
so has part: feature:4032502-4032663:-1:exon
so has part: feature:4025446-4025621:-1:exon
so has part: feature:4022362-4022506:-1:exon
so has part: feature:4021434-4021552:-1:exon

position:4021434:-1
position: 4021434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4038674-4038833:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4038369-4038522:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4034291-4034414:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4032502-4032663:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4025446-4025621:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4022362-4022506:-1:exon

position:4022362:-1
position: 4022362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4022506:-1
position: 4022506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4021434-4021552:-1:exon

ROPN1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: ROPN1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ropporin-1-like protein isoform X2
translation: MPLPDTMFCAQQIQIPPELPDILKQFTKAAIRTQPADVLQWSAGYFSALSRGDPLPVKDRIEMPVATQKTDTGLTQGLLKVLHKQCSHKQYVELADLEQKWKNLCLPIENFRALLQLDPCEDKIEWIKFLALGCSMLGGSLNSSMKHLCEILTTDPEGGPARIPFETFSYVYRYLSRMDSDIHEVDTESYLATLKDTLESRKNGMIGLSDFFVLTRKV
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: complement(join(4021489..4021552,4025446..4025621,4032502..4032663,4034291..4034414,4038369..4038499))
location: region:4021489-4038499:-1
so has part: feature:4038369-4038499:-1:exon
so has part: feature:4034291-4034414:-1:exon
so has part: feature:4032502-4032663:-1:exon
so has part: feature:4025446-4025621:-1:exon
so has part: feature:4021489-4021552:-1:exon

XP_038439252.1
type: Protein
SIO_000068: ncbiprotein

position:4021489:-1
position: 4021489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4038499:-1
position: 4038499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4038369-4038499:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4034291-4034414:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4032502-4032663:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4025446-4025621:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4021489-4021552:-1:exon

ROPN1L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: ROPN1L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ropporin-1-like protein isoform X1
translation: MPLPDTMFCAQQIQIPPELPDILKQFTKAAIRTQPADVLQWSAGYFSALSRGDPLPVKDRIEMPVATQKTDTGLTQGLLKVLHKQCSHKQYVELADLEQKWKNLCLPIENFRALLQLDPCEDKIEWIKFLALGCSMLGGSLNSSMKHLCEILTTDPEGGPARIPFETFSYVYRYLSRMDSDIHEVDTESYLATLKDTLDLAREAWEAPGRLEWPLPVSRRIWHPAFMARFVLQPLVAA
SIO_010081: ROPN1L
subclass of: SO_0000673
so part of: ROPN1L
location: complement(join(4022383..4022506,4025446..4025621,4032502..4032663,4034291..4034414,4038369..4038499))
location: region:4022383-4038499:-1
so has part: feature:4038369-4038499:-1:exon
so has part: feature:4034291-4034414:-1:exon
so has part: feature:4032502-4032663:-1:exon
so has part: feature:4025446-4025621:-1:exon
so has part: feature:4022383-4022506:-1:exon

XP_038439251.1
type: Protein
SIO_000068: ncbiprotein

position:4022383:-1
position: 4022383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4038369-4038499:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4034291-4034414:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4032502-4032663:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4025446-4025621:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4022383-4022506:-1:exon

LOC119867469
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867469
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4039158..4044902
location: region:4039158-4044902:1
so has part: feature:4039158-4044902:1:exon
subclass of: SO_0000011

119867469
type: Gene
SIO_000068: ncbigene

position:4039158:1
position: 4039158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4044902:1
position: 4044902
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4039158-4044902:1:exon

LOC119867469
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867469
product: uncharacterized LOC119867469, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383663.1
SIO_010081: LOC119867469
subclass of: SO_0000673
so part of: LOC119867469
location: join(4039158..4039644,4042580..4042621,4043603..4044902)
location: region:4039158-4044902:1
so has part: feature:4039158-4039644:1:exon
so has part: feature:4042580-4042621:1:exon
so has part: feature:4043603-4044902:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4039158-4039644:1:exon

position:4039644:1
position: 4039644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4042580-4042621:1:exon

position:4042580:1
position: 4042580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4042621:1
position: 4042621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4043603-4044902:1:exon

position:4043603:1
position: 4043603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119867469
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867469
product: uncharacterized LOC119867469, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005383664.1
SIO_010081: LOC119867469
subclass of: SO_0000673
so part of: LOC119867469
location: join(4040497..4041167,4042580..4042621,4043603..4044902)
location: region:4040497-4044902:1
so has part: feature:4040497-4041167:1:exon
so has part: feature:4042580-4042621:1:exon
so has part: feature:4043603-4044902:1:exon

position:4040497:1
position: 4040497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4040497-4041167:1:exon

position:4041167:1
position: 4041167
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4042580-4042621:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4043603-4044902:1:exon

MARCHF6
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: MARCHF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4044972..4127896)
location: region:4044972-4127896:-1
so has part: feature:4044972-4127896:-1:exon
subclass of: SO_0000010

478617
type: Gene
SIO_000068: ncbigene

position:4044972:-1
position: 4044972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4127896:-1
position: 4127896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4044972-4127896:-1:exon

MARCHF6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: MARCHF6
product: membrane associated ring-CH-type finger 6, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583321.1
SIO_010081: MARCHF6
subclass of: SO_0000673
so part of: MARCHF6
location: complement(join(4044972..4048753,4051626..4051761,4052791..4052923,4055223..4055312,4061394..4061528,4063531..4063727,4066842..4066911,4068712..4068916,4070113..4070250,4073550..4073650,4074438..4074557,4077396..4077530,4078814..4078888,4078965..4079033,4079276..4079356,4080560..4080618,4085169..4085220,4086325..4086357,4086901..4086962,4088357..4088546,4091115..4091283,4095543..4095615,4102173..4102316,4106286..4106359,4106986..4107082,4127786..4127896))
location: region:4044972-4127896:-1
so has part: feature:4127786-4127896:-1:exon
so has part: feature:4106986-4107082:-1:exon
so has part: feature:4106286-4106359:-1:exon
so has part: feature:4102173-4102316:-1:exon
so has part: feature:4095543-4095615:-1:exon
so has part: feature:4091115-4091283:-1:exon
so has part: feature:4088357-4088546:-1:exon
so has part: feature:4086901-4086962:-1:exon
so has part: feature:4086325-4086357:-1:exon
so has part: feature:4085169-4085220:-1:exon
so has part: feature:4080560-4080618:-1:exon
so has part: feature:4079276-4079356:-1:exon
so has part: feature:4078965-4079033:-1:exon
so has part: feature:4078814-4078888:-1:exon
so has part: feature:4077396-4077530:-1:exon
so has part: feature:4074438-4074557:-1:exon
so has part: feature:4073550-4073650:-1:exon
so has part: feature:4070113-4070250:-1:exon
so has part: feature:4068712-4068916:-1:exon
so has part: feature:4066842-4066911:-1:exon
so has part: feature:4063531-4063727:-1:exon
so has part: feature:4061394-4061528:-1:exon
so has part: feature:4055223-4055312:-1:exon
so has part: feature:4052791-4052923:-1:exon
so has part: feature:4051626-4051761:-1:exon
so has part: feature:4044972-4048753:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4127786-4127896:-1:exon

position:4127786:-1
position: 4127786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4106986-4107082:-1:exon

position:4106986:-1
position: 4106986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4107082:-1
position: 4107082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4106286-4106359:-1:exon

position:4106286:-1
position: 4106286
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4106359:-1
position: 4106359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4102173-4102316:-1:exon

position:4102173:-1
position: 4102173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4102316:-1
position: 4102316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4095543-4095615:-1:exon

position:4095543:-1
position: 4095543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4095615:-1
position: 4095615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4091115-4091283:-1:exon

position:4091115:-1
position: 4091115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4091283:-1
position: 4091283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4088357-4088546:-1:exon

position:4088357:-1
position: 4088357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4088546:-1
position: 4088546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4086901-4086962:-1:exon

position:4086901:-1
position: 4086901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4086962:-1
position: 4086962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4086325-4086357:-1:exon

position:4086325:-1
position: 4086325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4086357:-1
position: 4086357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4085169-4085220:-1:exon

position:4085169:-1
position: 4085169
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4085220:-1
position: 4085220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4080560-4080618:-1:exon

position:4080560:-1
position: 4080560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4080618:-1
position: 4080618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4079276-4079356:-1:exon

position:4079276:-1
position: 4079276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4079356:-1
position: 4079356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:4078965-4079033:-1:exon

position:4078965:-1
position: 4078965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4079033:-1
position: 4079033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:4078814-4078888:-1:exon

position:4078814:-1
position: 4078814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4078888:-1
position: 4078888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:4077396-4077530:-1:exon

position:4077396:-1
position: 4077396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4077530:-1
position: 4077530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:4074438-4074557:-1:exon

position:4074438:-1
position: 4074438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4074557:-1
position: 4074557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:4073550-4073650:-1:exon

position:4073550:-1
position: 4073550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4073650:-1
position: 4073650
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:4070113-4070250:-1:exon

position:4070113:-1
position: 4070113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4070250:-1
position: 4070250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:4068712-4068916:-1:exon

position:4068712:-1
position: 4068712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4068916:-1
position: 4068916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
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MARCHF6
type: Messenger RNA
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gene: MARCHF6
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note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_038583322.1
SIO_010081: MARCHF6
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MARCHF6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: MARCHF6
product: membrane associated ring-CH-type finger 6, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_038583320.1
SIO_010081: MARCHF6
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MARCHF6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: MARCHF6
product: membrane associated ring-CH-type finger 6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_038583319.1
SIO_010081: MARCHF6
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MARCHF6
type: Messenger RNA
subclass of: SO_0000234
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product: membrane associated ring-CH-type finger 6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
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SIO_010081: MARCHF6
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urn:…
SIO_000300: 22
SIO_000628: feature:4061394-4061528:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4055223-4055312:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4052791-4052923:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4051626-4051761:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4044972-4048753:-1:exon

MARCHF6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: MARCHF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MARCHF6 isoform X4
translation: MDTAEEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTDNLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAENVAPDQPANPPAENAVVGENPDAQDEQAEEEEEDNEEEDDAGGEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSLLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPAFLFSVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIIRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMGILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGTSPPPPQSSQE
SIO_010081: MARCHF6
subclass of: SO_0000673
so part of: MARCHF6
location: complement(join(4048663..4048753,4051626..4051761,4052791..4052923,4055223..4055312,4061394..4061528,4063531..4063727,4066842..4066911,4068712..4068916,4070113..4070250,4073550..4073650,4074438..4074557,4077396..4077530,4078814..4078888,4078965..4079033,4079276..4079356,4080560..4080618,4085169..4085220,4086325..4086357,4086901..4086962,4088357..4088546,4091115..4091283,4095543..4095615,4102173..4102316,4106286..4106359,4106986..4107082,4127786..4127804))
location: region:4048663-4127804:-1
so has part: feature:4127786-4127804:-1:exon
so has part: feature:4106986-4107082:-1:exon
so has part: feature:4106286-4106359:-1:exon
so has part: feature:4102173-4102316:-1:exon
so has part: feature:4095543-4095615:-1:exon
so has part: feature:4091115-4091283:-1:exon
so has part: feature:4088357-4088546:-1:exon
so has part: feature:4086901-4086962:-1:exon
so has part: feature:4086325-4086357:-1:exon
so has part: feature:4085169-4085220:-1:exon
so has part: feature:4080560-4080618:-1:exon
so has part: feature:4079276-4079356:-1:exon
so has part: feature:4078965-4079033:-1:exon
so has part: feature:4078814-4078888:-1:exon
so has part: feature:4077396-4077530:-1:exon
so has part: feature:4074438-4074557:-1:exon
so has part: feature:4073550-4073650:-1:exon
so has part: feature:4070113-4070250:-1:exon
so has part: feature:4068712-4068916:-1:exon
so has part: feature:4066842-4066911:-1:exon
so has part: feature:4063531-4063727:-1:exon
so has part: feature:4061394-4061528:-1:exon
so has part: feature:4055223-4055312:-1:exon
so has part: feature:4052791-4052923:-1:exon
so has part: feature:4051626-4051761:-1:exon
so has part: feature:4048663-4048753:-1:exon

XP_038439249.1
type: Protein
SIO_000068: ncbiprotein

position:4048663:-1
position: 4048663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4127804:-1
position: 4127804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4127786-4127804:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4106986-4107082:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4106286-4106359:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4102173-4102316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4095543-4095615:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4091115-4091283:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4088357-4088546:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4086901-4086962:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4086325-4086357:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4085169-4085220:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4080560-4080618:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4079276-4079356:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4078965-4079033:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4078814-4078888:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4077396-4077530:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4074438-4074557:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4073550-4073650:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4070113-4070250:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4068712-4068916:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4066842-4066911:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4063531-4063727:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4061394-4061528:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4055223-4055312:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4052791-4052923:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4051626-4051761:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4048663-4048753:-1:exon

MARCHF6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: MARCHF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MARCHF6 isoform X3
translation: MFSLIKDEDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTDNLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAENVAPDQPANPPAENAVVGENPDAQDEQAEEEEEDNEEEDDAGGEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSLLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPAFLFSVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIIRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMGILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGTSPPPPQSSQE
SIO_010081: MARCHF6
subclass of: SO_0000673
so part of: MARCHF6
location: complement(join(4048663..4048753,4051626..4051761,4052791..4052923,4055223..4055312,4061394..4061528,4063531..4063727,4066842..4066911,4068712..4068916,4070113..4070250,4073550..4073650,4074438..4074557,4077396..4077530,4078814..4078888,4078965..4079033,4079276..4079356,4080560..4080618,4085169..4085220,4086325..4086357,4086901..4086962,4088357..4088546,4091115..4091283,4095543..4095615,4102173..4102316,4106286..4106359,4106986..4107082,4108057..4108081))
location: region:4048663-4108081:-1
so has part: feature:4108057-4108081:-1:exon
so has part: feature:4106986-4107082:-1:exon
so has part: feature:4106286-4106359:-1:exon
so has part: feature:4102173-4102316:-1:exon
so has part: feature:4095543-4095615:-1:exon
so has part: feature:4091115-4091283:-1:exon
so has part: feature:4088357-4088546:-1:exon
so has part: feature:4086901-4086962:-1:exon
so has part: feature:4086325-4086357:-1:exon
so has part: feature:4085169-4085220:-1:exon
so has part: feature:4080560-4080618:-1:exon
so has part: feature:4079276-4079356:-1:exon
so has part: feature:4078965-4079033:-1:exon
so has part: feature:4078814-4078888:-1:exon
so has part: feature:4077396-4077530:-1:exon
so has part: feature:4074438-4074557:-1:exon
so has part: feature:4073550-4073650:-1:exon
so has part: feature:4070113-4070250:-1:exon
so has part: feature:4068712-4068916:-1:exon
so has part: feature:4066842-4066911:-1:exon
so has part: feature:4063531-4063727:-1:exon
so has part: feature:4061394-4061528:-1:exon
so has part: feature:4055223-4055312:-1:exon
so has part: feature:4052791-4052923:-1:exon
so has part: feature:4051626-4051761:-1:exon
so has part: feature:4048663-4048753:-1:exon

XP_038439248.1
type: Protein
SIO_000068: ncbiprotein

position:4108081:-1
position: 4108081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4108057-4108081:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4106986-4107082:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4106286-4106359:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4102173-4102316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4095543-4095615:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4091115-4091283:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4088357-4088546:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4086901-4086962:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4086325-4086357:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4085169-4085220:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4080560-4080618:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4079276-4079356:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4078965-4079033:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4078814-4078888:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4077396-4077530:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4074438-4074557:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4073550-4073650:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4070113-4070250:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4068712-4068916:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4066842-4066911:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4063531-4063727:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4061394-4061528:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4055223-4055312:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4052791-4052923:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4051626-4051761:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4048663-4048753:-1:exon

MARCHF6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: MARCHF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MARCHF6 isoform X2
translation: MTLRLLPGNQSSSDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTDNLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAENVAPDQPANPPAENAVVGENPDAQDEQAEEEEEDNEEEDDAGGEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSLLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIIRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMGILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGTSPPPPQSSQE
SIO_010081: MARCHF6
subclass of: SO_0000673
so part of: MARCHF6
location: complement(join(4048663..4048753,4051626..4051761,4052791..4052923,4055223..4055312,4061394..4061528,4063531..4063712,4066842..4066911,4068712..4068916,4070113..4070250,4073550..4073650,4074438..4074557,4077396..4077530,4078814..4078888,4078965..4079033,4079276..4079356,4080560..4080618,4085169..4085220,4086325..4086357,4086901..4086962,4088357..4088546,4091115..4091283,4095543..4095615,4102173..4102316,4106286..4106359,4106986..4107082,4107929..4107968))
location: region:4048663-4107968:-1
so has part: feature:4107929-4107968:-1:exon
so has part: feature:4106986-4107082:-1:exon
so has part: feature:4106286-4106359:-1:exon
so has part: feature:4102173-4102316:-1:exon
so has part: feature:4095543-4095615:-1:exon
so has part: feature:4091115-4091283:-1:exon
so has part: feature:4088357-4088546:-1:exon
so has part: feature:4086901-4086962:-1:exon
so has part: feature:4086325-4086357:-1:exon
so has part: feature:4085169-4085220:-1:exon
so has part: feature:4080560-4080618:-1:exon
so has part: feature:4079276-4079356:-1:exon
so has part: feature:4078965-4079033:-1:exon
so has part: feature:4078814-4078888:-1:exon
so has part: feature:4077396-4077530:-1:exon
so has part: feature:4074438-4074557:-1:exon
so has part: feature:4073550-4073650:-1:exon
so has part: feature:4070113-4070250:-1:exon
so has part: feature:4068712-4068916:-1:exon
so has part: feature:4066842-4066911:-1:exon
so has part: feature:4063531-4063712:-1:exon
so has part: feature:4061394-4061528:-1:exon
so has part: feature:4055223-4055312:-1:exon
so has part: feature:4052791-4052923:-1:exon
so has part: feature:4051626-4051761:-1:exon
so has part: feature:4048663-4048753:-1:exon

XP_038439247.1
type: Protein
SIO_000068: ncbiprotein

position:4107968:-1
position: 4107968
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4107929-4107968:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4106986-4107082:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4106286-4106359:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4102173-4102316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4095543-4095615:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4091115-4091283:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4088357-4088546:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4086901-4086962:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4086325-4086357:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4085169-4085220:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4080560-4080618:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4079276-4079356:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4078965-4079033:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4078814-4078888:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4077396-4077530:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4074438-4074557:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4073550-4073650:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4070113-4070250:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4068712-4068916:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4066842-4066911:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4063531-4063712:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4061394-4061528:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4055223-4055312:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4052791-4052923:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4051626-4051761:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4048663-4048753:-1:exon

MARCHF6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: MARCHF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MARCHF6 isoform X1
translation: MTLRLLPGNQSSSDICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPDMPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTDNLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAENVAPDQPANPPAENAVVGENPDAQDEQAEEEEEDNEEEDDAGGEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSLLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPAFLFSVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIIRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMGILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGTSPPPPQSSQE
SIO_010081: MARCHF6
subclass of: SO_0000673
so part of: MARCHF6
location: complement(join(4048663..4048753,4051626..4051761,4052791..4052923,4055223..4055312,4061394..4061528,4063531..4063727,4066842..4066911,4068712..4068916,4070113..4070250,4073550..4073650,4074438..4074557,4077396..4077530,4078814..4078888,4078965..4079033,4079276..4079356,4080560..4080618,4085169..4085220,4086325..4086357,4086901..4086962,4088357..4088546,4091115..4091283,4095543..4095615,4102173..4102316,4106286..4106359,4106986..4107082,4107929..4107968))
location: region:4048663-4107968:-1
so has part: feature:4107929-4107968:-1:exon
so has part: feature:4106986-4107082:-1:exon
so has part: feature:4106286-4106359:-1:exon
so has part: feature:4102173-4102316:-1:exon
so has part: feature:4095543-4095615:-1:exon
so has part: feature:4091115-4091283:-1:exon
so has part: feature:4088357-4088546:-1:exon
so has part: feature:4086901-4086962:-1:exon
so has part: feature:4086325-4086357:-1:exon
so has part: feature:4085169-4085220:-1:exon
so has part: feature:4080560-4080618:-1:exon
so has part: feature:4079276-4079356:-1:exon
so has part: feature:4078965-4079033:-1:exon
so has part: feature:4078814-4078888:-1:exon
so has part: feature:4077396-4077530:-1:exon
so has part: feature:4074438-4074557:-1:exon
so has part: feature:4073550-4073650:-1:exon
so has part: feature:4070113-4070250:-1:exon
so has part: feature:4068712-4068916:-1:exon
so has part: feature:4066842-4066911:-1:exon
so has part: feature:4063531-4063727:-1:exon
so has part: feature:4061394-4061528:-1:exon
so has part: feature:4055223-4055312:-1:exon
so has part: feature:4052791-4052923:-1:exon
so has part: feature:4051626-4051761:-1:exon
so has part: feature:4048663-4048753:-1:exon

XP_038439246.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4107929-4107968:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4106986-4107082:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4106286-4106359:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4102173-4102316:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4095543-4095615:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4091115-4091283:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4088357-4088546:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4086901-4086962:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4086325-4086357:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4085169-4085220:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4080560-4080618:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4079276-4079356:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4078965-4079033:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4078814-4078888:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4077396-4077530:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4074438-4074557:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4073550-4073650:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4070113-4070250:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4068712-4068916:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4066842-4066911:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4063531-4063727:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4061394-4061528:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4055223-4055312:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:4052791-4052923:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:4051626-4051761:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:4048663-4048753:-1:exon

MARCHF6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: MARCHF6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: E3 ubiquitin-protein ligase MARCHF6 isoform X5
translation: MPSRLPIQDIFAGLVTSIGTAIRYWFHYTLVAFAWLGVVPLTACRIYKCLFTGSVSSLLTLPLDMLSTDNLLADCLQGCFVVTCTLCAFISLVWLREQIVHGGAPIWLEHAAPPFNAAGHHQNEAPAGGNGAENVAPDQPANPPAENAVVGENPDAQDEQAEEEEEDNEEEDDAGGEDAADANNGAQDDMNWNALEWDRAAEELTWERMLGLDGSLVFLEHVFWVVSLNTLFILVFAFCPYHIGHFSLVGLGFEEHVQASHFEGLITTIVGYILLAITLIICHGLATLVKFHRSRRLLGVCYIVVKVSLLVVVEIGVFPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMVYVFYFASFILLLREVLRPGVLWFLRNLNDPDFNPVQEMIHLPIYRHLRRFILSVIVFGSIVLLMLWLPIRIIKSLLPNFLPYNVMLYSDAPVSELSLELLLLQVVLPALLEQGHTRQWLKGLVRAWTVTAGYLLDLHSYLLGDQEENENSANQQVNNNQHARNNNAIPVVGEGLHAAHQAILQQGGPVGFQPYRRPLNFPLRIFLLIVFMCITLLIASLICLTLPAFLFSVFAGRWLMSFWTGTAKIHELYTAACGLYVCWLTIRAVTVLVAWMPQGRRVIFQKVKEWSLMIMKTLIVAVLLAGVVPLLLGLLFELVIVAPLRVPLDQTPLFYPWQDWALGVLHAKIIAAITLMGPQWWLKTVIEQVYANGIRNIDLHYIIRKLAAPVISVLLLSLCVPYVIASGVVPLLGVTAEMQNLVHRRIYPFLLMVVVLMGILSFQVRQFKRLYEHIKNDKYLVGQRLVNYERKSGKQGTSPPPPQSSQE
SIO_010081: MARCHF6
subclass of: SO_0000673
so part of: MARCHF6
location: complement(join(4048663..4048753,4051626..4051761,4052791..4052923,4055223..4055312,4061394..4061528,4063531..4063727,4066842..4066911,4068712..4068916,4070113..4070250,4073550..4073650,4074438..4074557,4077396..4077530,4078814..4078888,4078965..4079033,4079276..4079356,4080560..4080618,4085169..4085220,4086325..4086357,4086901..4086962,4088357..4088546,4091115..4091283,4095543..4095615,4102173..4102302))
location: region:4048663-4102302:-1
so has part: feature:4102173-4102302:-1:exon
so has part: feature:4095543-4095615:-1:exon
so has part: feature:4091115-4091283:-1:exon
so has part: feature:4088357-4088546:-1:exon
so has part: feature:4086901-4086962:-1:exon
so has part: feature:4086325-4086357:-1:exon
so has part: feature:4085169-4085220:-1:exon
so has part: feature:4080560-4080618:-1:exon
so has part: feature:4079276-4079356:-1:exon
so has part: feature:4078965-4079033:-1:exon
so has part: feature:4078814-4078888:-1:exon
so has part: feature:4077396-4077530:-1:exon
so has part: feature:4074438-4074557:-1:exon
so has part: feature:4073550-4073650:-1:exon
so has part: feature:4070113-4070250:-1:exon
so has part: feature:4068712-4068916:-1:exon
so has part: feature:4066842-4066911:-1:exon
so has part: feature:4063531-4063727:-1:exon
so has part: feature:4061394-4061528:-1:exon
so has part: feature:4055223-4055312:-1:exon
so has part: feature:4052791-4052923:-1:exon
so has part: feature:4051626-4051761:-1:exon
so has part: feature:4048663-4048753:-1:exon

XP_038439250.1
type: Protein
SIO_000068: ncbiprotein

position:4102302:-1
position: 4102302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4102173-4102302:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4095543-4095615:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4091115-4091283:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4088357-4088546:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4086901-4086962:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4086325-4086357:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4085169-4085220:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4080560-4080618:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4079276-4079356:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4078965-4079033:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4078814-4078888:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:4077396-4077530:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:4074438-4074557:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:4073550-4073650:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4070113-4070250:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:4068712-4068916:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:4066842-4066911:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:4063531-4063727:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:4061394-4061528:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:4055223-4055312:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:4052791-4052923:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:4051626-4051761:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:4048663-4048753:-1:exon

LOC119877857
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119877857
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4083267..4083983
location: region:4083267-4083983:1
so has part: feature:4083267-4083983:1:exon
subclass of: SO_0000010

119877857
type: Gene
SIO_000068: ncbigene

position:4083267:1
position: 4083267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4083983:1
position: 4083983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4083267-4083983:1:exon

LOC119877857
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC119877857
product: 60S ribosomal protein L27a-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XM_038583325.1
SIO_010081: LOC119877857
subclass of: SO_0000673
so part of: LOC119877857
location: join(4083267..4083494,4083700..4083983)
location: region:4083267-4083983:1
so has part: feature:4083267-4083494:1:exon
so has part: feature:4083700-4083983:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4083267-4083494:1:exon

position:4083494:1
position: 4083494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4083700-4083983:1:exon

position:4083700:1
position: 4083700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119877857
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC119877857
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 60S ribosomal protein L27a-like
translation: MPSRLGKTRKLRGHVSHGHSRIGKHWKHPGGQGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNATKNKTGAAPIIDVVRSGYYKVLGKGKHPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA
SIO_010081: LOC119877857
subclass of: SO_0000673
so part of: LOC119877857
location: join(4083286..4083494,4083700..4083937)
location: region:4083286-4083937:1
so has part: feature:4083286-4083494:1:exon
so has part: feature:4083700-4083937:1:exon

XP_038439253.1
type: Protein
SIO_000068: ncbiprotein

position:4083286:1
position: 4083286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4083937:1
position: 4083937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4083286-4083494:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4083700-4083937:1:exon

LOC119877854
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119877854
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4138614..4143997)
location: region:4138614-4143997:-1
so has part: feature:4138614-4143997:-1:exon
subclass of: SO_0000011

119877854
type: Gene
SIO_000068: ncbigene

position:4138614:-1
position: 4138614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4143997:-1
position: 4143997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4138614-4143997:-1:exon

LOC119877854
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119877854
product: uncharacterized LOC119877854
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383490.1
SIO_010081: LOC119877854
subclass of: SO_0000673
so part of: LOC119877854
location: complement(join(4138614..4138840,4140484..4140701,4143877..4143997))
location: region:4138614-4143997:-1
so has part: feature:4143877-4143997:-1:exon
so has part: feature:4140484-4140701:-1:exon
so has part: feature:4138614-4138840:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4143877-4143997:-1:exon

position:4143877:-1
position: 4143877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4140484-4140701:-1:exon

position:4140484:-1
position: 4140484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4140701:-1
position: 4140701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4138614-4138840:-1:exon

position:4138840:-1
position: 4138840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119867419
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867419
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4164866..4166054)
location: region:4164866-4166054:-1
so has part: feature:4164866-4166054:-1:exon
subclass of: SO_0000011

119867419
type: Gene
SIO_000068: ncbigene

position:4164866:-1
position: 4164866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4166054:-1
position: 4166054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4164866-4166054:-1:exon

LOC119867419
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867419
product: uncharacterized LOC119867419
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383491.1
SIO_010081: LOC119867419
subclass of: SO_0000673
so part of: LOC119867419
location: complement(join(4164866..4165134,4165592..4166054))
location: region:4164866-4166054:-1
so has part: feature:4165592-4166054:-1:exon
so has part: feature:4164866-4165134:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4165592-4166054:-1:exon

position:4165592:-1
position: 4165592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4164866-4165134:-1:exon

position:4165134:-1
position: 4165134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CMBL
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: CMBL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4172202..4195845
location: region:4172202-4195845:1
so has part: feature:4172202-4195845:1:exon
subclass of: SO_0000010

478619
type: Gene
SIO_000068: ncbigene

position:4172202:1
position: 4172202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4195845:1
position: 4195845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4172202-4195845:1:exon

CMBL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CMBL
product: carboxymethylenebutenolidase homolog, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_038583326.1
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4172202..4172292,4185310..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4195099..4195485)
location: region:4172202-4195485:1
so has part: feature:4172202-4172292:1:exon
so has part: feature:4185310-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4195099-4195485:1:exon

position:4195485:1
position: 4195485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4172202-4172292:1:exon

position:4172292:1
position: 4172292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4185310-4185543:1:exon

position:4185310:1
position: 4185310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4185543:1
position: 4185543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4187555-4187662:1:exon

position:4187555:1
position: 4187555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4187662:1
position: 4187662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4191540-4191682:1:exon

position:4191540:1
position: 4191540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4191682:1
position: 4191682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4193987-4194078:1:exon

position:4193987:1
position: 4193987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4194078:1
position: 4194078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4195099-4195485:1:exon

position:4195099:1
position: 4195099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CMBL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CMBL
product: carboxymethylenebutenolidase homolog, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583327.1
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4172219..4172314,4185310..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4195099..4195845)
location: region:4172219-4195845:1
so has part: feature:4172219-4172314:1:exon
so has part: feature:4185310-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4195099-4195845:1:exon

position:4172219:1
position: 4172219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4172219-4172314:1:exon

position:4172314:1
position: 4172314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4185310-4185543:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4195099-4195845:1:exon

CMBL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CMBL
product: carboxymethylenebutenolidase homolog, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_038583329.1
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4172219..4172314,4185310..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4194373..4194952)
location: region:4172219-4194952:1
so has part: feature:4172219-4172314:1:exon
so has part: feature:4185310-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4194373-4194952:1:exon

position:4194952:1
position: 4194952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4172219-4172314:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4185310-4185543:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4194373-4194952:1:exon

position:4194373:1
position: 4194373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CMBL
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CMBL
product: carboxymethylenebutenolidase homolog, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_038583328.1
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4172384..4172532,4185310..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4195099..4195485)
location: region:4172384-4195485:1
so has part: feature:4172384-4172532:1:exon
so has part: feature:4185310-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4195099-4195485:1:exon

position:4172384:1
position: 4172384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4172384-4172532:1:exon

position:4172532:1
position: 4172532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4185310-4185543:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4195099-4195485:1:exon

TRNAE-CUC
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: TRNAE-CUC
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(4175924..4175996)
location: region:4175924-4175996:-1
so has part: feature:4175924-4175996:-1:exon
subclass of: SO_0000663

119867584
type: Gene
SIO_000068: ncbigene

position:4175924:-1
position: 4175924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4175996:-1
position: 4175996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4175924-4175996:-1:exon

TRNAE-CUC
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 9615
gene: TRNAE-CUC
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(4175961..4175963),aa:Glu, seq:ctc)
SIO_010081: TRNAE-CUC
subclass of: SO_0000673
so part of: TRNAE-CUC
location: complement(4175924..4175996)
location: region:4175924-4175996:-1
so has part: feature:4175924-4175996:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4175924-4175996:-1:exon

CMBL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CMBL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carboxymethylenebutenolidase homolog isoform X1
translation: MANEAYPCPCDIGHKLEYGGMGREVQVEHIKAYVTKPPFDTGKAVIVIQDIFGWQLPNTRYMADMIAGNGYTAIVPDFFVGQEPWHPSGDWSTFPEWLKTRDARKIDKEVDAVLKYLKQQCHAQKIGIVGFCWGGVAVHHVMMKYPEFRAGVSVYGIIKDSEDVHSLKNPTLFIFAENDAVIPLEQVSLLTQKLKKHCKVEYQIKTFSGQTHGFVHRKREDCSAEDKPYIDEARRNLIEWLHKYV
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4185329..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4195099..4195278)
location: region:4185329-4195278:1
so has part: feature:4185329-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4195099-4195278:1:exon

XP_038439254.1
type: Protein
SIO_000068: ncbiprotein

position:4185329:1
position: 4185329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4195278:1
position: 4195278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4185329-4185543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4195099-4195278:1:exon

CMBL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CMBL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carboxymethylenebutenolidase homolog isoform X1
translation: MANEAYPCPCDIGHKLEYGGMGREVQVEHIKAYVTKPPFDTGKAVIVIQDIFGWQLPNTRYMADMIAGNGYTAIVPDFFVGQEPWHPSGDWSTFPEWLKTRDARKIDKEVDAVLKYLKQQCHAQKIGIVGFCWGGVAVHHVMMKYPEFRAGVSVYGIIKDSEDVHSLKNPTLFIFAENDAVIPLEQVSLLTQKLKKHCKVEYQIKTFSGQTHGFVHRKREDCSAEDKPYIDEARRNLIEWLHKYV
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4185329..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4195099..4195278)
location: region:4185329-4195278:1
so has part: feature:4185329-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4195099-4195278:1:exon

XP_038439255.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4185329-4185543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4195099-4195278:1:exon

CMBL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CMBL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carboxymethylenebutenolidase homolog isoform X1
translation: MANEAYPCPCDIGHKLEYGGMGREVQVEHIKAYVTKPPFDTGKAVIVIQDIFGWQLPNTRYMADMIAGNGYTAIVPDFFVGQEPWHPSGDWSTFPEWLKTRDARKIDKEVDAVLKYLKQQCHAQKIGIVGFCWGGVAVHHVMMKYPEFRAGVSVYGIIKDSEDVHSLKNPTLFIFAENDAVIPLEQVSLLTQKLKKHCKVEYQIKTFSGQTHGFVHRKREDCSAEDKPYIDEARRNLIEWLHKYV
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4185329..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4195099..4195278)
location: region:4185329-4195278:1
so has part: feature:4185329-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4195099-4195278:1:exon

XP_038439256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4185329-4185543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4195099-4195278:1:exon

CMBL
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CMBL
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: carboxymethylenebutenolidase homolog isoform X2
translation: MANEAYPCPCDIGHKLEYGGMGREVQVEHIKAYVTKPPFDTGKAVIVIQDIFGWQLPNTRYMADMIAGNGYTAIVPDFFVGQEPWHPSGDWSTFPEWLKTRDARKIDKEVDAVLKYLKQQCHAQKIGIVGFCWGGVAVHHVMMKYPEFRAGVSVYGIIKDSEDVHSLKNPTLFIFAENDAVIPLEQGKCSKGFICCSKYFSTLKF
SIO_010081: CMBL
subclass of: SO_0000673
so part of: CMBL
location: join(4185329..4185543,4187555..4187662,4191540..4191682,4193987..4194078,4194373..4194432)
location: region:4185329-4194432:1
so has part: feature:4185329-4185543:1:exon
so has part: feature:4187555-4187662:1:exon
so has part: feature:4191540-4191682:1:exon
so has part: feature:4193987-4194078:1:exon
so has part: feature:4194373-4194432:1:exon

XP_038439257.1
type: Protein
SIO_000068: ncbiprotein

position:4194432:1
position: 4194432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4185329-4185543:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4187555-4187662:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4191540-4191682:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4193987-4194078:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4194373-4194432:1:exon

CCT5
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: CCT5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4200135..4213334)
location: region:4200135-4213334:-1
so has part: feature:4200135-4213334:-1:exon
subclass of: SO_0000010

606873
type: Gene
SIO_000068: ncbigene

position:4200135:-1
position: 4200135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4213334:-1
position: 4213334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4200135-4213334:-1:exon

CCT5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: CCT5
product: chaperonin containing TCP1 subunit 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_038583330.1
SIO_010081: CCT5
subclass of: SO_0000673
so part of: CCT5
location: complement(join(4200135..4200414,4201435..4201615,4202087..4202224,4202819..4203004,4203669..4203788,4206053..4206202,4206283..4206475,4208082..4208280,4209760..4209924,4210418..4210478,4212745..4213096,4213190..4213334))
location: region:4200135-4213334:-1
so has part: feature:4213190-4213334:-1:exon
so has part: feature:4212745-4213096:-1:exon
so has part: feature:4210418-4210478:-1:exon
so has part: feature:4209760-4209924:-1:exon
so has part: feature:4208082-4208280:-1:exon
so has part: feature:4206283-4206475:-1:exon
so has part: feature:4206053-4206202:-1:exon
so has part: feature:4203669-4203788:-1:exon
so has part: feature:4202819-4203004:-1:exon
so has part: feature:4202087-4202224:-1:exon
so has part: feature:4201435-4201615:-1:exon
so has part: feature:4200135-4200414:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4213190-4213334:-1:exon

position:4213190:-1
position: 4213190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4212745-4213096:-1:exon

position:4212745:-1
position: 4212745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4213096:-1
position: 4213096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4210418-4210478:-1:exon

position:4210418:-1
position: 4210418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4210478:-1
position: 4210478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4209760-4209924:-1:exon

position:4209760:-1
position: 4209760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4209924:-1
position: 4209924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4208082-4208280:-1:exon

position:4208082:-1
position: 4208082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4208280:-1
position: 4208280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4206283-4206475:-1:exon

position:4206283:-1
position: 4206283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4206475:-1
position: 4206475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4206053-4206202:-1:exon

position:4206053:-1
position: 4206053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4206202:-1
position: 4206202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4203669-4203788:-1:exon

position:4203669:-1
position: 4203669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4203788:-1
position: 4203788
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4202819-4203004:-1:exon

position:4202819:-1
position: 4202819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4203004:-1
position: 4203004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4202087-4202224:-1:exon

position:4202087:-1
position: 4202087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4202224:-1
position: 4202224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4201435-4201615:-1:exon

position:4201435:-1
position: 4201435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4201615:-1
position: 4201615
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:4200135-4200414:-1:exon

position:4200414:-1
position: 4200414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCT5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: CCT5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: T-complex protein 1 subunit epsilon
translation: MASVGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVENAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTVFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGESEE
SIO_010081: CCT5
subclass of: SO_0000673
so part of: CCT5
location: complement(join(4200287..4200414,4201435..4201615,4202087..4202224,4202819..4203004,4203669..4203788,4206053..4206202,4206283..4206475,4208082..4208280,4209760..4209924,4210418..4210478,4212745..4212849))
location: region:4200287-4212849:-1
so has part: feature:4212745-4212849:-1:exon
so has part: feature:4210418-4210478:-1:exon
so has part: feature:4209760-4209924:-1:exon
so has part: feature:4208082-4208280:-1:exon
so has part: feature:4206283-4206475:-1:exon
so has part: feature:4206053-4206202:-1:exon
so has part: feature:4203669-4203788:-1:exon
so has part: feature:4202819-4203004:-1:exon
so has part: feature:4202087-4202224:-1:exon
so has part: feature:4201435-4201615:-1:exon
so has part: feature:4200287-4200414:-1:exon

XP_038439258.1
type: Protein
SIO_000068: ncbiprotein

position:4200287:-1
position: 4200287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4212849:-1
position: 4212849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4212745-4212849:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4210418-4210478:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4209760-4209924:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4208082-4208280:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4206283-4206475:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4206053-4206202:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4203669-4203788:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4202819-4203004:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:4202087-4202224:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:4201435-4201615:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:4200287-4200414:-1:exon

ATPSCKMT
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: ATPSCKMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4213142..4411648
location: region:4213142-4411648:1
so has part: feature:4213142-4411648:1:exon
subclass of: SO_0000010

478620
type: Gene
SIO_000068: ncbigene

position:4213142:1
position: 4213142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4411648:1
position: 4411648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213142-4411648:1:exon

ATPSCKMT
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: ATPSCKMT
product: ATP synthase c subunit lysine N-methyltransferase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
transcript id: XR_005383665.1
SIO_010081: ATPSCKMT
so part of: ATPSCKMT
location: join(4213142..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4225331..4225678,4230479..4230616)
location: region:4213142-4230616:1
so has part: feature:4213142-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4225331-4225678:1:exon
so has part: feature:4230479-4230616:1:exon

position:4230616:1
position: 4230616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213142-4213330:1:exon

position:4213330:1
position: 4213330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

position:4217689:1
position: 4217689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4217975:1
position: 4217975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

position:4221907:1
position: 4221907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4222044:1
position: 4222044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

position:4223265:1
position: 4223265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4223315:1
position: 4223315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4225331-4225678:1:exon

position:4225331:1
position: 4225331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4225678:1
position: 4225678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4230479-4230616:1:exon

position:4230479:1
position: 4230479
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATPSCKMT
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: ATPSCKMT
product: ATP synthase c subunit lysine N-methyltransferase, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383666.1
SIO_010081: ATPSCKMT
so part of: ATPSCKMT
location: join(4213143..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4287128..4287169,4390136..4390510,4403312..4403404,4405583..4405687,4407608..4407661,4408528..4408660,4411402..4411648)
location: region:4213143-4411648:1
so has part: feature:4213143-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4287128-4287169:1:exon
so has part: feature:4390136-4390510:1:exon
so has part: feature:4403312-4403404:1:exon
so has part: feature:4405583-4405687:1:exon
so has part: feature:4407608-4407661:1:exon
so has part: feature:4408528-4408660:1:exon
so has part: feature:4411402-4411648:1:exon

position:4213143:1
position: 4213143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213143-4213330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4287128-4287169:1:exon

position:4287128:1
position: 4287128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4287169:1
position: 4287169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4390136-4390510:1:exon

position:4390136:1
position: 4390136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4390510:1
position: 4390510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4403312-4403404:1:exon

position:4403312:1
position: 4403312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4403404:1
position: 4403404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4405583-4405687:1:exon

position:4405583:1
position: 4405583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4405687:1
position: 4405687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:4407608-4407661:1:exon

position:4407608:1
position: 4407608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4407661:1
position: 4407661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4408528-4408660:1:exon

position:4408528:1
position: 4408528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4408660:1
position: 4408660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:4411402-4411648:1:exon

position:4411402:1
position: 4411402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATPSCKMT
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: ATPSCKMT
product: ATP synthase c subunit lysine N-methyltransferase, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005383667.1
SIO_010081: ATPSCKMT
so part of: ATPSCKMT
location: join(4213143..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4287128..4287169,4390136..4390510,4403312..4403404,4405583..4406202)
location: region:4213143-4406202:1
so has part: feature:4213143-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4287128-4287169:1:exon
so has part: feature:4390136-4390510:1:exon
so has part: feature:4403312-4403404:1:exon
so has part: feature:4405583-4406202:1:exon

position:4406202:1
position: 4406202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213143-4213330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4287128-4287169:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4390136-4390510:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:4403312-4403404:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:4405583-4406202:1:exon

ATPSCKMT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: ATPSCKMT
product: ATP synthase c subunit lysine N-methyltransferase, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_038583332.1
SIO_010081: ATPSCKMT
subclass of: SO_0000673
so part of: ATPSCKMT
location: join(4213144..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4225680..4225998)
location: region:4213144-4225998:1
so has part: feature:4213144-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4225680-4225998:1:exon

position:4213144:1
position: 4213144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4225998:1
position: 4225998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213144-4213330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4225680-4225998:1:exon

position:4225680:1
position: 4225680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ATPSCKMT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: ATPSCKMT
product: ATP synthase c subunit lysine N-methyltransferase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583331.1
SIO_010081: ATPSCKMT
subclass of: SO_0000673
so part of: ATPSCKMT
location: join(4213174..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4230479..4231179)
location: region:4213174-4231179:1
so has part: feature:4213174-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4230479-4231179:1:exon

position:4213174:1
position: 4213174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4231179:1
position: 4231179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213174-4213330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4230479-4231179:1:exon

ATPSCKMT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: ATPSCKMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase subunit C lysine N-methyltransferase isoform X1
translation: MARGGGTSPEILEETQLGCVLPTSLGTNSLKKSSWGVLITGIVGGTLVAVYAVATPFLTPALRKICLPFVPATTKQIANVVKMLHCRRGSLVDIGSGDGRIVIAAAKEGFTAVGYELNPWLVWYSRYRAWREGVQDSAKFYISDLWKVTFSQYSNVVIFGVPQMMLRLKEKLALELEDDARVIACRFPFPGWTPDHVTGEGVDTVWAYDISTLRGKRPQGPAHTQSVTQM
SIO_010081: ATPSCKMT
subclass of: SO_0000673
so part of: ATPSCKMT
location: join(4213315..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4230479..4230679)
location: region:4213315-4230679:1
so has part: feature:4213315-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4230479-4230679:1:exon

XP_038439259.1
type: Protein
SIO_000068: ncbiprotein

position:4213315:1
position: 4213315
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4230679:1
position: 4230679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213315-4213330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4230479-4230679:1:exon

ATPSCKMT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: ATPSCKMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase subunit C lysine N-methyltransferase isoform X2
translation: MARGGGTSPEILEETQLGCVLPTSLGTNSLKKSSWGVLITGIVGGTLVAVYAVATPFLTPALRKICLPFVPATTKQIANVVKMLHCRRGSLVDIGSGDGRIVIAAAKEGFTAVGYELNPWLVWYSRYRAWREGVQDSAKFYISDLWKVTFSQYSNVVIFGVPQM
SIO_010081: ATPSCKMT
subclass of: SO_0000673
so part of: ATPSCKMT
location: join(4213315..4213330,4217689..4217975,4221907..4222044,4223265..4223315,4225680..4225682)
location: region:4213315-4225682:1
so has part: feature:4213315-4213330:1:exon
so has part: feature:4217689-4217975:1:exon
so has part: feature:4221907-4222044:1:exon
so has part: feature:4223265-4223315:1:exon
so has part: feature:4225680-4225682:1:exon

XP_038439260.1
type: Protein
SIO_000068: ncbiprotein

position:4225682:1
position: 4225682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4213315-4213330:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4217689-4217975:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4221907-4222044:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4223265-4223315:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4225680-4225682:1:exon

LOC119877858
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119877858
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: complement(4350982..4382463)
location: region:4350982-4382463:-1
so has part: feature:4350982-4382463:-1:exon

119877858
type: Gene
SIO_000068: ncbigene

position:4350982:-1
position: 4350982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4382463:-1
position: 4382463
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4350982-4382463:-1:exon

LOC119877858
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119877858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC119877858
subclass of: SO_0000673
so part of: LOC119877858
location: complement(4350982..4351023)
location: region:4350982-4351023:-1
so has part: feature:4350982-4351023:-1:exon

position:4351023:-1
position: 4351023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4350982-4351023:-1:exon

LOC119877858
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119877858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC119877858
subclass of: SO_0000673
so part of: LOC119877858
location: complement(4351231..4351602)
location: region:4351231-4351602:-1
so has part: feature:4351231-4351602:-1:exon

position:4351231:-1
position: 4351231
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4351602:-1
position: 4351602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4351231-4351602:-1:exon

LOC119877858
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119877858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC119877858
subclass of: SO_0000673
so part of: LOC119877858
location: complement(4351876..4352408)
location: region:4351876-4352408:-1
so has part: feature:4351876-4352408:-1:exon

position:4351876:-1
position: 4351876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4352408:-1
position: 4352408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4351876-4352408:-1:exon

LOC119877858
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119877858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC119877858
subclass of: SO_0000673
so part of: LOC119877858
location: complement(4381060..4381291)
location: region:4381060-4381291:-1
so has part: feature:4381060-4381291:-1:exon

position:4381060:-1
position: 4381060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4381291:-1
position: 4381291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4381060-4381291:-1:exon

LOC119877858
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119877858
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
pseudo: true
SIO_010081: LOC119877858
subclass of: SO_0000673
so part of: LOC119877858
location: complement(4382429..4382463)
location: region:4382429-4382463:-1
so has part: feature:4382429-4382463:-1:exon

position:4382429:-1
position: 4382429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4382429-4382463:-1:exon

LOC111093897
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093897
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4415064..4429719)
location: region:4415064-4429719:-1
so has part: feature:4415064-4429719:-1:exon
subclass of: SO_0000011

111093897
type: Gene
SIO_000068: ncbigene

position:4415064:-1
position: 4415064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4429719:-1
position: 4429719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4415064-4429719:-1:exon

LOC111093897
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093897
product: uncharacterized LOC111093897
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005383670.1
SIO_010081: LOC111093897
subclass of: SO_0000673
so part of: LOC111093897
location: complement(join(4415064..4416022,4417314..4417418,4417627..4417682,4429646..4429719))
location: region:4415064-4429719:-1
so has part: feature:4429646-4429719:-1:exon
so has part: feature:4417627-4417682:-1:exon
so has part: feature:4417314-4417418:-1:exon
so has part: feature:4415064-4416022:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4429646-4429719:-1:exon

position:4429646:-1
position: 4429646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4417627-4417682:-1:exon

position:4417627:-1
position: 4417627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4417682:-1
position: 4417682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4417314-4417418:-1:exon

position:4417314:-1
position: 4417314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4417418:-1
position: 4417418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4415064-4416022:-1:exon

position:4416022:-1
position: 4416022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119867470
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867470
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4435723..4452150
location: region:4435723-4452150:1
so has part: feature:4435723-4452150:1:exon
subclass of: SO_0000011

119867470
type: Gene
SIO_000068: ncbigene

position:4435723:1
position: 4435723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4452150:1
position: 4452150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4435723-4452150:1:exon

LOC119867470
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867470
product: uncharacterized LOC119867470, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383669.1
SIO_010081: LOC119867470
subclass of: SO_0000673
so part of: LOC119867470
location: join(4435723..4435865,4436836..4437079,4441607..4441722,4452103..4452150)
location: region:4435723-4452150:1
so has part: feature:4435723-4435865:1:exon
so has part: feature:4436836-4437079:1:exon
so has part: feature:4441607-4441722:1:exon
so has part: feature:4452103-4452150:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4435723-4435865:1:exon

position:4435865:1
position: 4435865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4436836-4437079:1:exon

position:4436836:1
position: 4436836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4437079:1
position: 4437079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4441607-4441722:1:exon

position:4441607:1
position: 4441607
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4441722:1
position: 4441722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4452103-4452150:1:exon

position:4452103:1
position: 4452103
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC111093915
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093915
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4506448..4515522
location: region:4506448-4515522:1
so has part: feature:4506448-4515522:1:exon
subclass of: SO_0000011

111093915
type: Gene
SIO_000068: ncbigene

position:4506448:1
position: 4506448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4515522:1
position: 4515522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4506448-4515522:1:exon

LOC111093915
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093915
product: uncharacterized LOC111093915, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383668.1
SIO_010081: LOC111093915
subclass of: SO_0000673
so part of: LOC111093915
location: join(4506448..4510391,4512244..4512413,4514908..4515522)
location: region:4506448-4515522:1
so has part: feature:4506448-4510391:1:exon
so has part: feature:4512244-4512413:1:exon
so has part: feature:4514908-4515522:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4506448-4510391:1:exon

position:4510391:1
position: 4510391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4512244-4512413:1:exon

position:4512244:1
position: 4512244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4512413:1
position: 4512413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4514908-4515522:1:exon

position:4514908:1
position: 4514908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC102155897
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102155897
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4518499..4533572)
location: region:4518499-4533572:-1
so has part: feature:4518499-4533572:-1:exon
subclass of: SO_0000011

102155897
type: Gene
SIO_000068: ncbigene

position:4518499:-1
position: 4518499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4533572:-1
position: 4533572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4518499-4533572:-1:exon

LOC102155897
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC102155897
product: uncharacterized LOC102155897
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_005383492.1
SIO_010081: LOC102155897
subclass of: SO_0000673
so part of: LOC102155897
location: complement(join(4518499..4519507,4532072..4532211,4533458..4533572))
location: region:4518499-4533572:-1
so has part: feature:4533458-4533572:-1:exon
so has part: feature:4532072-4532211:-1:exon
so has part: feature:4518499-4519507:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4533458-4533572:-1:exon

position:4533458:-1
position: 4533458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4532072-4532211:-1:exon

position:4532072:-1
position: 4532072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4532211:-1
position: 4532211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4518499-4519507:-1:exon

position:4519507:-1
position: 4519507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093882
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093882
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4593684..4615181
location: region:4593684-4615181:1
so has part: feature:4593684-4615181:1:exon
subclass of: SO_0000011

111093882
type: Gene
SIO_000068: ncbigene

position:4593684:1
position: 4593684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4615181:1
position: 4615181
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4593684-4615181:1:exon

LOC111093882
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093882
product: uncharacterized LOC111093882
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383671.1
SIO_010081: LOC111093882
subclass of: SO_0000673
so part of: LOC111093882
location: join(4593684..4593841,4594890..4595037,4610160..4610349,4614618..4615181)
location: region:4593684-4615181:1
so has part: feature:4593684-4593841:1:exon
so has part: feature:4594890-4595037:1:exon
so has part: feature:4610160-4610349:1:exon
so has part: feature:4614618-4615181:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4593684-4593841:1:exon

position:4593841:1
position: 4593841
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4594890-4595037:1:exon

position:4594890:1
position: 4594890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4595037:1
position: 4595037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4610160-4610349:1:exon

position:4610160:1
position: 4610160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4610349:1
position: 4610349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4614618-4615181:1:exon

position:4614618:1
position: 4614618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC606906
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC606906
note: nucleophosmin (nucleolar phosphoprotein B23, numatrin) pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
pseudo: true
so part of: sequence
location: complement(4605860..4607039)
location: region:4605860-4607039:-1
so has part: feature:4605860-4607039:-1:exon

606906
type: Gene
SIO_000068: ncbigene

position:4605860:-1
position: 4605860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4607039:-1
position: 4607039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4605860-4607039:-1:exon

LOC606906
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC606906
note: Derived by automated computational analysis using gene prediction method: Curated Genomic.
pseudo: true
SIO_010081: LOC606906
subclass of: SO_0000673
so part of: LOC606906
location: complement(4605860..4607039)
location: region:4605860-4607039:-1
so has part: feature:4605860-4607039:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4605860-4607039:-1:exon

LOC111093931
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093931
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4632109..4643190)
location: region:4632109-4643190:-1
so has part: feature:4632109-4643190:-1:exon
subclass of: SO_0000011

111093931
type: Gene
SIO_000068: ncbigene

position:4632109:-1
position: 4632109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4643190:-1
position: 4643190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4632109-4643190:-1:exon

LOC111093931
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093931
product: uncharacterized LOC111093931, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383673.1
SIO_010081: LOC111093931
subclass of: SO_0000673
so part of: LOC111093931
location: complement(join(4632109..4632551,4639316..4639465,4642639..4643190))
location: region:4632109-4643190:-1
so has part: feature:4642639-4643190:-1:exon
so has part: feature:4639316-4639465:-1:exon
so has part: feature:4632109-4632551:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4642639-4643190:-1:exon

position:4642639:-1
position: 4642639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4639316-4639465:-1:exon

position:4639316:-1
position: 4639316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4639465:-1
position: 4639465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4632109-4632551:-1:exon

position:4632551:-1
position: 4632551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093931
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093931
product: uncharacterized LOC111093931, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383672.1
SIO_010081: LOC111093931
subclass of: SO_0000673
so part of: LOC111093931
location: complement(join(4632109..4632551,4639316..4639503))
location: region:4632109-4639503:-1
so has part: feature:4639316-4639503:-1:exon
so has part: feature:4632109-4632551:-1:exon

position:4639503:-1
position: 4639503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4639316-4639503:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4632109-4632551:-1:exon

LOC111093932
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093932
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4646785..4649368
location: region:4646785-4649368:1
so has part: feature:4646785-4649368:1:exon
subclass of: SO_0000011

111093932
type: Gene
SIO_000068: ncbigene

position:4646785:1
position: 4646785
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4649368:1
position: 4649368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4646785-4649368:1:exon

LOC111093932
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093932
product: uncharacterized LOC111093932
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383674.1
SIO_010081: LOC111093932
subclass of: SO_0000673
so part of: LOC111093932
location: join(4646785..4647821,4647928..4647993,4649227..4649368)
location: region:4646785-4649368:1
so has part: feature:4646785-4647821:1:exon
so has part: feature:4647928-4647993:1:exon
so has part: feature:4649227-4649368:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4646785-4647821:1:exon

position:4647821:1
position: 4647821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4647928-4647993:1:exon

position:4647928:1
position: 4647928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4647993:1
position: 4647993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4649227-4649368:1:exon

position:4649227:1
position: 4649227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TAS2R1
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
alternative label: CAFA-T2R1
gene: TAS2R1
gene synonym: CAFA-T2R1
note: taste 2 receptor member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
so part of: sequence
location: 4701177..4702070
location: region:4701177-4702070:1
so has part: feature:4701177-4702070:1:exon
subclass of: SO_0000010

100271742
type: Gene
SIO_000068: ncbigene

position:4701177:1
position: 4701177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4702070:1
position: 4702070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4701177-4702070:1:exon

TAS2R1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
alternative label: CAFA-T2R1
gene: TAS2R1
gene synonym: CAFA-T2R1
product: taste 2 receptor member 1
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
transcript id: NM_001145505.1
SIO_010081: TAS2R1
subclass of: SO_0000673
so part of: TAS2R1
location: 4701177..4702070
location: region:4701177-4702070:1
so has part: feature:4701177-4702070:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4701177-4702070:1:exon

TAS2R1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
alternative label: CAFA-T2R1
gene: TAS2R1
gene synonym: CAFA-T2R1
note: Derived by automated computational analysis using gene prediction method: BestRefSeq.
codon start: 1
product: taste receptor type 2 member 1
translation: MLEFYLIIHFLFTVMQFLIGVLANGIIVVVNGTELIKQRKMIPLALLLCCLAISRICLQLIIFFMNLGTLFLIEVPLLADNFVIFVFVNELGLWFATWLGVYYCAKIAPITHSFFFWLKIRISKWMPWLILGSMMYASVPSVFCSKQIWVYSQNVLSSLFSPNATQIKETSALQIAFLIRLLLPLLIFLGSTLLLIFSLGRHTWQMRNTATGPRDPSTGVHVSTILSVLSFLVLCLSHYMAAALLSFQIFQLRSLVFLICLWVFGSYPSGHSMILILGNPKLKQNAKKLLLHGKCCQ
SIO_010081: TAS2R1
subclass of: SO_0000673
so part of: TAS2R1
location: 4701177..4702070
location: region:4701177-4702070:1
so has part: feature:4701177-4702070:1:exon

NP_001138977.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4701177-4702070:1:exon

LOC119867461
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867461
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4727935..4775069)
location: region:4727935-4775069:-1
so has part: feature:4727935-4775069:-1:exon
subclass of: SO_0000010

119867461
type: Gene
SIO_000068: ncbigene

position:4727935:-1
position: 4727935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4775069:-1
position: 4775069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4727935-4775069:-1:exon

LOC119867461
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC119867461
product: uncharacterized LOC119867461
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038583951.1
SIO_010081: LOC119867461
subclass of: SO_0000673
so part of: LOC119867461
location: complement(join(4727935..4728067,4728346..4728469,4729447..4729578,4739382..4739447,4745715..4745865,4749532..4749624,4772011..4772108,4774781..4775069))
location: region:4727935-4775069:-1
so has part: feature:4774781-4775069:-1:exon
so has part: feature:4772011-4772108:-1:exon
so has part: feature:4749532-4749624:-1:exon
so has part: feature:4745715-4745865:-1:exon
so has part: feature:4739382-4739447:-1:exon
so has part: feature:4729447-4729578:-1:exon
so has part: feature:4728346-4728469:-1:exon
so has part: feature:4727935-4728067:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4774781-4775069:-1:exon

position:4774781:-1
position: 4774781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4772011-4772108:-1:exon

position:4772011:-1
position: 4772011
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4772108:-1
position: 4772108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4749532-4749624:-1:exon

position:4749532:-1
position: 4749532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4749624:-1
position: 4749624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4745715-4745865:-1:exon

position:4745715:-1
position: 4745715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4745865:-1
position: 4745865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:4739382-4739447:-1:exon

position:4739382:-1
position: 4739382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4739447:-1
position: 4739447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:4729447-4729578:-1:exon

position:4729447:-1
position: 4729447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4729578:-1
position: 4729578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:4728346-4728469:-1:exon

position:4728346:-1
position: 4728346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4728469:-1
position: 4728469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:4727935-4728067:-1:exon

position:4728067:-1
position: 4728067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119867461
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC119867461
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC119867461
translation: MKIHEADPPMTLTEKYLKVPAMALVYFHVQVDQTGLKAHSGRTYRSSRSYSKLLGWRRIIHYKEWTSCMVKHTMGWDCQLLCCREAHPFVGTVLFPSWMLKKYDLMINLPIISRCLASPPVASSALAREGKGTLGWKAEFLQKKKSKEGVVEESRATHTDRCHWGWAGPEGSTGLHTIYASSHTPRAENRQRWQGLKYLLSGSSPKKRALSPEL
SIO_010081: LOC119867461
subclass of: SO_0000673
so part of: LOC119867461
location: complement(join(4727935..4728067,4728346..4728469,4729447..4729578,4739382..4739447,4745715..4745865,4749532..4749570))
location: region:4727935-4749570:-1
so has part: feature:4749532-4749570:-1:exon
so has part: feature:4745715-4745865:-1:exon
so has part: feature:4739382-4739447:-1:exon
so has part: feature:4729447-4729578:-1:exon
so has part: feature:4728346-4728469:-1:exon
so has part: feature:4727935-4728067:-1:exon

XP_038439879.1
type: Protein
SIO_000068: ncbiprotein

position:4749570:-1
position: 4749570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4749532-4749570:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4745715-4745865:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:4739382-4739447:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:4729447-4729578:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:4728346-4728469:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:4727935-4728067:-1:exon

LOC119867575
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867575
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(4772208..4772276)
location: region:4772208-4772276:-1
so has part: feature:4772208-4772276:-1:exon
subclass of: SO_0000578

119867575
type: Gene
SIO_000068: ncbigene

position:4772208:-1
position: 4772208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4772276:-1
position: 4772276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4772208-4772276:-1:exon

LOC119867575
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: snoRNA
gene: LOC119867575
product: small nucleolar RNA SNORD123
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF01156
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005384089.1
SIO_010081: LOC119867575
subclass of: SO_0000673
so part of: LOC119867575
location: complement(4772208..4772276)
location: region:4772208-4772276:-1
so has part: feature:4772208-4772276:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4772208-4772276:-1:exon

SEMA5A
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: SEMA5A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4776835..5250400
location: region:4776835-5250400:1
so has part: feature:4776835-5250400:1:exon
subclass of: SO_0000010

478622
type: Gene
SIO_000068: ncbigene

position:4776835:1
position: 4776835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5250400:1
position: 5250400
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4776835-5250400:1:exon

SEMA5A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: SEMA5A
product: semaphorin 5A, transcript variant X7
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 ESTs, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_038583333.1
SIO_010081: SEMA5A
subclass of: SO_0000673
so part of: SEMA5A
location: join(4776835..4776962,4879296..4879387,4946610..4946807,4992233..4992332,5008566..5008611,5070748..5070810,5082590..5082689,5084673..5084886,5100151..5100436,5103485..5103620,5110709..5110913,5138486..5138693,5155043..5155160,5165419..5165600,5171396..5171539,5181914..5182061,5219708..5219933,5223332..5223550,5232406..5232576,5234111..5234266,5235637..5235684,5240155..5240366,5243307..5250400)
location: region:4776835-5250400:1
so has part: feature:4776835-4776962:1:exon
so has part: feature:4879296-4879387:1:exon
so has part: feature:4946610-4946807:1:exon
so has part: feature:4992233-4992332:1:exon
so has part: feature:5008566-5008611:1:exon
so has part: feature:5070748-5070810:1:exon
so has part: feature:5082590-5082689:1:exon
so has part: feature:5084673-5084886:1:exon
so has part: feature:5100151-5100436:1:exon
so has part: feature:5103485-5103620:1:exon
so has part: feature:5110709-5110913:1:exon
so has part: feature:5138486-5138693:1:exon
so has part: feature:5155043-5155160:1:exon
so has part: feature:5165419-5165600:1:exon
so has part: feature:5171396-5171539:1:exon
so has part: feature:5181914-5182061:1:exon
so has part: feature:5219708-5219933:1:exon
so has part: feature:5223332-5223550:1:exon
so has part: feature:5232406-5232576:1:exon
so has part: feature:5234111-5234266:1:exon
so has part: feature:5235637-5235684:1:exon
so has part: feature:5240155-5240366:1:exon
so has part: feature:5243307-5250400:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4776835-4776962:1:exon

position:4776962:1
position: 4776962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4879296-4879387:1:exon

position:4879296:1
position: 4879296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4879387:1
position: 4879387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:4946610-4946807:1:exon

position:4946610:1
position: 4946610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4946807:1
position: 4946807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:4992233-4992332:1:exon

position:4992233:1
position: 4992233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4992332:1
position: 4992332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5008566-5008611:1:exon

position:5008566:1
position: 5008566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5008611:1
position: 5008611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:5070748-5070810:1:exon

position:5070748:1
position: 5070748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5070810:1
position: 5070810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:5082590-5082689:1:exon

position:5082590:1
position: 5082590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5082689:1
position: 5082689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:5084673-5084886:1:exon

position:5084673:1
position: 5084673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5084886:1
position: 5084886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:5100151-5100436:1:exon

position:5100151:1
position: 5100151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5100436:1
position: 5100436
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:5103485-5103620:1:exon

position:5103485:1
position: 5103485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5103620:1
position: 5103620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:5110709-5110913:1:exon

position:5110709:1
position: 5110709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5110913:1
position: 5110913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:5138486-5138693:1:exon

position:5138486:1
position: 5138486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5138693:1
position: 5138693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:5155043-5155160:1:exon

position:5155043:1
position: 5155043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5155160:1
position: 5155160
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:5165419-5165600:1:exon

position:5165419:1
position: 5165419
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5165600:1
position: 5165600
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:5171396-5171539:1:exon

position:5171396:1
position: 5171396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5171539:1
position: 5171539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:5181914-5182061:1:exon

position:5181914:1
position: 5181914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5182061:1
position: 5182061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:5219708-5219933:1:exon

position:5219708:1
position: 5219708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5219933:1
position: 5219933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:5223332-5223550:1:exon

position:5223332:1
position: 5223332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5223550:1
position: 5223550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:5232406-5232576:1:exon

position:5232406:1
position: 5232406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5232576:1
position: 5232576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:5234111-5234266:1:exon

position:5234111:1
position: 5234111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5234266:1
position: 5234266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:5235637-5235684:1:exon

position:5235637:1
position: 5235637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5235684:1
position: 5235684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:5240155-5240366:1:exon

position:5240155:1
position: 5240155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5240366:1
position: 5240366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:5243307-5250400:1:exon

position:5243307:1
position: 5243307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

SEMA5A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: SEMA5A
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: semaphorin-5A isoform X7
translation: MKGTCVIAWLFSSLGWWRLAQPETDTSQCQRAEHPVTSYKEIGPWLREFRAKNAVDFSQLTFDPGQKELVVGARNYLFRLQLEDLSLIQAVEWECDEATKKACYSKGKSKEECQNYIRVLLVSGDWLFTCGTNAFTPVCTNRTLSNLTEIHDQISGMARCPYSPQHNSTALLTAGGELYAATAMDFPGRDPAIYRSLGILPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEHDCGKTVFSRAARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSTFFLAELDLIYGIFTTNVNSIAASAVCVFNLSAISQAFNGPFKYQENSRSAWLPYPNPNPNFQCGTVDQGLYMNLTERNLQDAQKFILMHEVVQPVTSVPSFMEDSSRFFHMVVDVVQGRDTLIHVIYLATGYGTIKKVRAPLTPAAGSCLLEEIEIFPEQRAEPIRSLQILHSQSALFVGLQEHVAKIQLKRCQFYRTRSACIGAQDPYCGWDMVMKKCTSLEDSLNMTQWEQITSTCPIRNLTVDGHFGAWSPWTPCTHTDGSAGGSCLCRTRTCDSPAPQCGGWQCEGPRMEIANCSRNGGWTPWTSWSPCSTTCGIGFQVRQRSCSNPTPRHGGRVCVGQNREERYCNEHLLCPPHMFWTGWGPWERCTAQCGGGIQARRRTCENGPDCAGCNVEYQPCNTNPCPELKKTTPWTPWTPVNISDNGGHYEQRFRYTCKARLPDPNLLEVGRQRIEMRYCSSDGTSGCSTDGLSGDFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPCLGPSLEYQECNILPCPVDGVWSCWSPWSKCSATCGGGHYMRTRSCTNPAPAYGGDICLGLHTEEAVCNTDPCPESWSEWSDWSECAVSGVQVRARQCILLFPVGSQCSGNTTESRPCVFDSNFVPEVSVARSSSVEEKRCGEFNLFHMLAVGLSSSILGCLLTLLVYTYCQRYQQQSHDATVIHPVAPAPLNTSITNHINKLDKYDSVEAIKAFNKNNLILEERNKYFNPHLSGKTYSNAYFTDLNNYDEY
SIO_010081: SEMA5A
subclass of: SO_0000673
so part of: SEMA5A
location: join(4946687..4946807,4992233..4992332,5008566..5008611,5070748..5070810,5082590..5082689,5084673..5084886,5100151..5100436,5103485..5103620,5110709..5110913,5138486..5138693,5155043..5155160,5165419..5165600,5171396..5171539,5181914..5182061,5219708..5219933,5223332..5223550,5232406..5232576,5234111..5234266,5235637..5235684,5240155..5240366,5243307..5243426)
location: region:4946687-5243426:1
so has part: feature:4946687-4946807:1:exon
so has part: feature:4992233-4992332:1:exon
so has part: feature:5008566-5008611:1:exon
so has part: feature:5070748-5070810:1:exon
so has part: feature:5082590-5082689:1:exon
so has part: feature:5084673-5084886:1:exon
so has part: feature:5100151-5100436:1:exon
so has part: feature:5103485-5103620:1:exon
so has part: feature:5110709-5110913:1:exon
so has part: feature:5138486-5138693:1:exon
so has part: feature:5155043-5155160:1:exon
so has part: feature:5165419-5165600:1:exon
so has part: feature:5171396-5171539:1:exon
so has part: feature:5181914-5182061:1:exon
so has part: feature:5219708-5219933:1:exon
so has part: feature:5223332-5223550:1:exon
so has part: feature:5232406-5232576:1:exon
so has part: feature:5234111-5234266:1:exon
so has part: feature:5235637-5235684:1:exon
so has part: feature:5240155-5240366:1:exon
so has part: feature:5243307-5243426:1:exon

XP_038439261.1
type: Protein
SIO_000068: ncbiprotein

position:4946687:1
position: 4946687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5243426:1
position: 5243426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4946687-4946807:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4992233-4992332:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5008566-5008611:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5070748-5070810:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5082590-5082689:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:5084673-5084886:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:5100151-5100436:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:5103485-5103620:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:5110709-5110913:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:5138486-5138693:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:5155043-5155160:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:5165419-5165600:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:5171396-5171539:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:5181914-5182061:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:5219708-5219933:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:5223332-5223550:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:5232406-5232576:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:5234111-5234266:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:5235637-5235684:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:5240155-5240366:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:5243307-5243426:1:exon

LOC111093959
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093959
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5370925..5396909)
location: region:5370925-5396909:-1
so has part: feature:5370925-5396909:-1:exon
subclass of: SO_0000011

111093959
type: Gene
SIO_000068: ncbigene

position:5370925:-1
position: 5370925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5396909:-1
position: 5396909
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5370925-5396909:-1:exon

LOC111093959
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093959
product: uncharacterized LOC111093959, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383493.1
SIO_010081: LOC111093959
subclass of: SO_0000673
so part of: LOC111093959
location: complement(join(5370925..5371131,5392845..5393002,5394264..5394326,5396418..5396909))
location: region:5370925-5396909:-1
so has part: feature:5396418-5396909:-1:exon
so has part: feature:5394264-5394326:-1:exon
so has part: feature:5392845-5393002:-1:exon
so has part: feature:5370925-5371131:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5396418-5396909:-1:exon

position:5396418:-1
position: 5396418
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5394264-5394326:-1:exon

position:5394264:-1
position: 5394264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5394326:-1
position: 5394326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5392845-5393002:-1:exon

position:5392845:-1
position: 5392845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5393002:-1
position: 5393002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5370925-5371131:-1:exon

position:5371131:-1
position: 5371131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119867422
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867422
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5396967..5399743)
location: region:5396967-5399743:-1
so has part: feature:5396967-5399743:-1:exon
subclass of: SO_0000011

119867422
type: Gene
SIO_000068: ncbigene

position:5396967:-1
position: 5396967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5399743:-1
position: 5399743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5396967-5399743:-1:exon

LOC119867422
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867422
product: uncharacterized LOC119867422
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383494.1
SIO_010081: LOC119867422
subclass of: SO_0000673
so part of: LOC119867422
location: complement(join(5396967..5397160,5397723..5397853,5399104..5399743))
location: region:5396967-5399743:-1
so has part: feature:5399104-5399743:-1:exon
so has part: feature:5397723-5397853:-1:exon
so has part: feature:5396967-5397160:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5399104-5399743:-1:exon

position:5399104:-1
position: 5399104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5397723-5397853:-1:exon

position:5397723:-1
position: 5397723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5397853:-1
position: 5397853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5396967-5397160:-1:exon

position:5397160:-1
position: 5397160
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093884
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093884
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5399831..5411150)
location: region:5399831-5411150:-1
so has part: feature:5399831-5411150:-1:exon
subclass of: SO_0000011

111093884
type: Gene
SIO_000068: ncbigene

position:5399831:-1
position: 5399831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5411150:-1
position: 5411150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5399831-5411150:-1:exon

LOC111093884
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093884
product: uncharacterized LOC111093884
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383495.1
SIO_010081: LOC111093884
subclass of: SO_0000673
so part of: LOC111093884
location: complement(join(5399831..5400515,5405780..5405871,5411054..5411150))
location: region:5399831-5411150:-1
so has part: feature:5411054-5411150:-1:exon
so has part: feature:5405780-5405871:-1:exon
so has part: feature:5399831-5400515:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5411054-5411150:-1:exon

position:5411054:-1
position: 5411054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5405780-5405871:-1:exon

position:5405780:-1
position: 5405780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5405871:-1
position: 5405871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5399831-5400515:-1:exon

position:5400515:-1
position: 5400515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093954
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093954
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(5702484..5704505)
location: region:5702484-5704505:-1
so has part: feature:5702484-5704505:-1:exon
subclass of: SO_0000011

111093954
type: Gene
SIO_000068: ncbigene

position:5702484:-1
position: 5702484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5704505:-1
position: 5704505
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5702484-5704505:-1:exon

LOC111093954
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093954
product: uncharacterized LOC111093954
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383496.1
SIO_010081: LOC111093954
subclass of: SO_0000673
so part of: LOC111093954
location: complement(join(5702484..5703417,5703800..5703976,5704317..5704505))
location: region:5702484-5704505:-1
so has part: feature:5704317-5704505:-1:exon
so has part: feature:5703800-5703976:-1:exon
so has part: feature:5702484-5703417:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5704317-5704505:-1:exon

position:5704317:-1
position: 5704317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5703800-5703976:-1:exon

position:5703800:-1
position: 5703800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5703976:-1
position: 5703976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5702484-5703417:-1:exon

position:5703417:-1
position: 5703417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119867462
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867462
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 5738771..5773826
location: region:5738771-5773826:1
so has part: feature:5738771-5773826:1:exon

119867462
type: Gene
SIO_000068: ncbigene

position:5738771:1
position: 5738771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5773826:1
position: 5773826
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5738771-5773826:1:exon

LOC119867462
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119867462
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119867462
subclass of: SO_0000673
so part of: LOC119867462
location: 5738771..5738947
location: region:5738771-5738947:1
so has part: feature:5738771-5738947:1:exon

position:5738947:1
position: 5738947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5738771-5738947:1:exon

LOC119867462
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119867462
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119867462
subclass of: SO_0000673
so part of: LOC119867462
location: 5741461..5741649
location: region:5741461-5741649:1
so has part: feature:5741461-5741649:1:exon

position:5741461:1
position: 5741461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5741649:1
position: 5741649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5741461-5741649:1:exon

LOC119867462
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119867462
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 18% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119867462
subclass of: SO_0000673
so part of: LOC119867462
location: 5772968..5773826
location: region:5772968-5773826:1
so has part: feature:5772968-5773826:1:exon

position:5772968:1
position: 5772968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5772968-5773826:1:exon

MTRR
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: MTRR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6217429..6249109)
location: region:6217429-6249109:-1
so has part: feature:6217429-6249109:-1:exon
subclass of: SO_0000010

478623
type: Gene
SIO_000068: ncbigene

position:6217429:-1
position: 6217429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6249109:-1
position: 6249109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6217429-6249109:-1:exon

MTRR
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: MTRR
product: 5-methyltetrahydrofolate-homocysteine methyltransferase reductase, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583334.1
SIO_010081: MTRR
subclass of: SO_0000673
so part of: MTRR
location: complement(join(6217429..6219287,6221701..6221883,6222002..6222094,6223123..6223241,6225769..6225955,6226527..6226569,6228868..6229048,6231415..6231503,6232429..6232582,6234593..6234715,6239879..6240254,6242777..6242894,6245298..6245451,6247057..6247219,6248996..6249109))
location: region:6217429-6249109:-1
so has part: feature:6248996-6249109:-1:exon
so has part: feature:6247057-6247219:-1:exon
so has part: feature:6245298-6245451:-1:exon
so has part: feature:6242777-6242894:-1:exon
so has part: feature:6239879-6240254:-1:exon
so has part: feature:6234593-6234715:-1:exon
so has part: feature:6232429-6232582:-1:exon
so has part: feature:6231415-6231503:-1:exon
so has part: feature:6228868-6229048:-1:exon
so has part: feature:6226527-6226569:-1:exon
so has part: feature:6225769-6225955:-1:exon
so has part: feature:6223123-6223241:-1:exon
so has part: feature:6222002-6222094:-1:exon
so has part: feature:6221701-6221883:-1:exon
so has part: feature:6217429-6219287:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6248996-6249109:-1:exon

position:6248996:-1
position: 6248996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6247057-6247219:-1:exon

position:6247057:-1
position: 6247057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6247219:-1
position: 6247219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6245298-6245451:-1:exon

position:6245298:-1
position: 6245298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6245451:-1
position: 6245451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6242777-6242894:-1:exon

position:6242777:-1
position: 6242777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6242894:-1
position: 6242894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6239879-6240254:-1:exon

position:6239879:-1
position: 6239879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6240254:-1
position: 6240254
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6234593-6234715:-1:exon

position:6234593:-1
position: 6234593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6234715:-1
position: 6234715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6232429-6232582:-1:exon

position:6232429:-1
position: 6232429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6232582:-1
position: 6232582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6231415-6231503:-1:exon

position:6231415:-1
position: 6231415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6231503:-1
position: 6231503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6228868-6229048:-1:exon

position:6228868:-1
position: 6228868
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6229048:-1
position: 6229048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6226527-6226569:-1:exon

position:6226527:-1
position: 6226527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6226569:-1
position: 6226569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6225769-6225955:-1:exon

position:6225769:-1
position: 6225769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6225955:-1
position: 6225955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6223123-6223241:-1:exon

position:6223123:-1
position: 6223123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6223241:-1
position: 6223241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6222002-6222094:-1:exon

position:6222002:-1
position: 6222002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6222094:-1
position: 6222094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6221701-6221883:-1:exon

position:6221701:-1
position: 6221701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6221883:-1
position: 6221883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6217429-6219287:-1:exon

position:6219287:-1
position: 6219287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MTRR
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: MTRR
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: methionine synthase reductase
translation: MRRFLLLYATQKGQAKAIAEEICEKAFAHGFSADLHCISESDKYDLKTETAPLVVVVSTTGTGDPPDTARKFVKEIQDKALPIDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQELGAQHFYDTGHADDCVGLELVVEPWINGLWAALTKHFMSSREKERNEALKMASNASQRMEPVKPELLYIESQVELLRLDDPGRKDSEVQEQNAVNRDQSSAPTAESQSSLTHSIPPLSQASLSIPALPPEYLQVHLQESVGQEESQASVTSVDPIFQVPISKAVQLTTNDAIKTTLLVELDISKTDFSYQPGDAFNVICPNSDSEVQNLLERLQLTDRREYCVLLKIKADTKKKGAALPQHIPEGRSLQFILTWCLEIRAVPKKALLRALVDYTSDGIEKRRLQELCSRQGAADYSRFVRDAHASVLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSNLSHPGKLHFIFNIVEFLSNTTVEVLRKGVCTGWLAMVVAPILHPNTRVSPAEDGKAPAPEISICPRTTNFFHLPSDPSAPIIMVGPGTGIAPFIGFLQHREKLQEQHPEGHFGATWLFFGCRHKDRDYLFREELRHFHKRGILTHLKVSFSRDAPVGEEAAPVKYVQDNIQLHSEQVARVLLNESGYIYVCGDAKNMAKDVNDTLVEIISKQAGVEKLEAMKRLATLKEEKRYLQDIWS
SIO_010081: MTRR
subclass of: SO_0000673
so part of: MTRR
location: complement(join(6219143..6219287,6221701..6221883,6222002..6222094,6223123..6223241,6225769..6225955,6226527..6226569,6228868..6229048,6231415..6231503,6232429..6232582,6234593..6234715,6239879..6240254,6242777..6242894,6245298..6245451,6247057..6247185))
location: region:6219143-6247185:-1
so has part: feature:6247057-6247185:-1:exon
so has part: feature:6245298-6245451:-1:exon
so has part: feature:6242777-6242894:-1:exon
so has part: feature:6239879-6240254:-1:exon
so has part: feature:6234593-6234715:-1:exon
so has part: feature:6232429-6232582:-1:exon
so has part: feature:6231415-6231503:-1:exon
so has part: feature:6228868-6229048:-1:exon
so has part: feature:6226527-6226569:-1:exon
so has part: feature:6225769-6225955:-1:exon
so has part: feature:6223123-6223241:-1:exon
so has part: feature:6222002-6222094:-1:exon
so has part: feature:6221701-6221883:-1:exon
so has part: feature:6219143-6219287:-1:exon

XP_038439262.1
type: Protein
SIO_000068: ncbiprotein

position:6219143:-1
position: 6219143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6247185:-1
position: 6247185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6247057-6247185:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6245298-6245451:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6242777-6242894:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6239879-6240254:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6234593-6234715:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6232429-6232582:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6231415-6231503:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6228868-6229048:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6226527-6226569:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6225769-6225955:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6223123-6223241:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6222002-6222094:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6221701-6221883:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6219143-6219287:-1:exon

MTRR
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: MTRR
product: 5-methyltetrahydrofolate-homocysteine methyltransferase reductase, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XR_005383675.1
SIO_010081: MTRR
so part of: MTRR
location: complement(join(6219149..6219287,6220210..6220374,6221701..6221883,6222002..6222094,6223123..6223241,6225769..6225955,6226527..6226569,6228868..6229048,6231415..6231503,6232429..6232582,6234593..6234715,6239879..6240254,6242777..6242894,6245298..6245451,6247057..6247219,6248996..6249109))
location: region:6219149-6249109:-1
so has part: feature:6248996-6249109:-1:exon
so has part: feature:6247057-6247219:-1:exon
so has part: feature:6245298-6245451:-1:exon
so has part: feature:6242777-6242894:-1:exon
so has part: feature:6239879-6240254:-1:exon
so has part: feature:6234593-6234715:-1:exon
so has part: feature:6232429-6232582:-1:exon
so has part: feature:6231415-6231503:-1:exon
so has part: feature:6228868-6229048:-1:exon
so has part: feature:6226527-6226569:-1:exon
so has part: feature:6225769-6225955:-1:exon
so has part: feature:6223123-6223241:-1:exon
so has part: feature:6222002-6222094:-1:exon
so has part: feature:6221701-6221883:-1:exon
so has part: feature:6220210-6220374:-1:exon
so has part: feature:6219149-6219287:-1:exon

position:6219149:-1
position: 6219149
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6248996-6249109:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6247057-6247219:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6245298-6245451:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6242777-6242894:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6239879-6240254:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6234593-6234715:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6232429-6232582:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6231415-6231503:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6228868-6229048:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6226527-6226569:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6225769-6225955:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6223123-6223241:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6222002-6222094:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6221701-6221883:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6220210-6220374:-1:exon

position:6220210:-1
position: 6220210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6220374:-1
position: 6220374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6219149-6219287:-1:exon

FASTKD3
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: FASTKD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6249220..6258702
location: region:6249220-6258702:1
so has part: feature:6249220-6258702:1:exon
subclass of: SO_0000010

488053
type: Gene
SIO_000068: ncbigene

position:6249220:1
position: 6249220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6258702:1
position: 6258702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6249220-6258702:1:exon

FASTKD3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: FASTKD3
product: FAST kinase domains 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583335.1
SIO_010081: FASTKD3
subclass of: SO_0000673
so part of: FASTKD3
location: join(6249220..6249294,6249823..6251296,6252010..6252095,6254282..6254456,6255667..6255736,6257042..6257156,6258196..6258702)
location: region:6249220-6258702:1
so has part: feature:6249220-6249294:1:exon
so has part: feature:6249823-6251296:1:exon
so has part: feature:6252010-6252095:1:exon
so has part: feature:6254282-6254456:1:exon
so has part: feature:6255667-6255736:1:exon
so has part: feature:6257042-6257156:1:exon
so has part: feature:6258196-6258702:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6249220-6249294:1:exon

position:6249294:1
position: 6249294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6249823-6251296:1:exon

position:6249823:1
position: 6249823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6251296:1
position: 6251296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6252010-6252095:1:exon

position:6252010:1
position: 6252010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6252095:1
position: 6252095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6254282-6254456:1:exon

position:6254282:1
position: 6254282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6254456:1
position: 6254456
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6255667-6255736:1:exon

position:6255667:1
position: 6255667
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6255736:1
position: 6255736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6257042-6257156:1:exon

position:6257042:1
position: 6257042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6257156:1
position: 6257156
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6258196-6258702:1:exon

position:6258196:1
position: 6258196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FASTKD3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: FASTKD3
product: FAST kinase domains 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583336.1
SIO_010081: FASTKD3
subclass of: SO_0000673
so part of: FASTKD3
location: join(6249220..6249294,6249823..6251296,6252010..6252095,6254282..6254456,6255547..6255683)
location: region:6249220-6255683:1
so has part: feature:6249220-6249294:1:exon
so has part: feature:6249823-6251296:1:exon
so has part: feature:6252010-6252095:1:exon
so has part: feature:6254282-6254456:1:exon
so has part: feature:6255547-6255683:1:exon

position:6255683:1
position: 6255683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6249220-6249294:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6249823-6251296:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6252010-6252095:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6254282-6254456:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6255547-6255683:1:exon

position:6255547:1
position: 6255547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

FASTKD3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: FASTKD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FAST kinase domain-containing protein 3, mitochondrial isoform X1
translation: MALITLRRNLCHLSDFRIHGALAALRNHPVSRVHKIAEERRPPWFCPLPSEPVRVRFHHACGQKFHSENGNDLLHPAGELVFPPAHDWDTPEQNPSRVDEQTFYERLNHLTSSEEVLSFVSTLQALPDTLAAGALQRICDMERKDGDQKLPKEILKNSVFQALCVQLERESSSLPDPVLVTALQALTLLHADPQSSLLLNLVAECQRRLQRGGLEVHSLCILGESLIKLQGPGCATLELIICQLQGEKLEEFTPEDIVTLYRILQACTVKVNQHQAFLNRINTFSLSVVYSLSPALMSQMLGALVVLDQTQALPLFIKLGKSVVKHIPHFTNEELRKVLEAFIYFGHNDRFFTKALEQHVASACLTLGPDVVSKVMEYCSRKRILSKPILDAVAETFICQSEKFSPHQISELIEPFGKLNYLPPNASTLFRKLENMLLTHFHYFPPKTLLKILHSCSLIECHPVNFMAKIFSPHFLQKLQGEELYLDRLSLAQLTQLFLTSVLECPFYKGQKLLSKYQVRSFLTPCCSLETPVDFQLFRSVKTGLIDLLGARVYFASKVLTPYCYTIDVEIKLDEEGLVLPSAVHEDVHKRVALCIDDPKRFSLNSKHLLGKEAIKQRHLRLLGYQVVQIPYYEIEVLKSRGELVEYLQRKLFPQSTGVCW
SIO_010081: FASTKD3
subclass of: SO_0000673
so part of: FASTKD3
location: join(6249856..6251296,6252010..6252095,6254282..6254456,6255667..6255736,6257042..6257156,6258196..6258294)
location: region:6249856-6258294:1
so has part: feature:6249856-6251296:1:exon
so has part: feature:6252010-6252095:1:exon
so has part: feature:6254282-6254456:1:exon
so has part: feature:6255667-6255736:1:exon
so has part: feature:6257042-6257156:1:exon
so has part: feature:6258196-6258294:1:exon

XP_038439263.1
type: Protein
SIO_000068: ncbiprotein

position:6249856:1
position: 6249856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6258294:1
position: 6258294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6249856-6251296:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6252010-6252095:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6254282-6254456:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6255667-6255736:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6257042-6257156:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6258196-6258294:1:exon

FASTKD3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: FASTKD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FAST kinase domain-containing protein 3, mitochondrial isoform X2
translation: MALITLRRNLCHLSDFRIHGALAALRNHPVSRVHKIAEERRPPWFCPLPSEPVRVRFHHACGQKFHSENGNDLLHPAGELVFPPAHDWDTPEQNPSRVDEQTFYERLNHLTSSEEVLSFVSTLQALPDTLAAGALQRICDMERKDGDQKLPKEILKNSVFQALCVQLERESSSLPDPVLVTALQALTLLHADPQSSLLLNLVAECQRRLQRGGLEVHSLCILGESLIKLQGPGCATLELIICQLQGEKLEEFTPEDIVTLYRILQACTVKVNQHQAFLNRINTFSLSVVYSLSPALMSQMLGALVVLDQTQALPLFIKLGKSVVKHIPHFTNEELRKVLEAFIYFGHNDRFFTKALEQHVASACLTLGPDVVSKVMEYCSRKRILSKPILDAVAETFICQSEKFSPHQISELIEPFGKLNYLPPNASTLFRKLENMLLTHFHYFPPKTLLKILHSCSLIECHPVNFMAKIFSPHFLQKLQGEELYLDRLSLAQLTQLFLTSVLECPFYKGQKLLSKYQVRSFLTPCCSLETPVDFQLFRSVKTGLIDLLGARVYFASKVLTPYCYTIASSAAGTLHCGRIQNRRRRRTGA
SIO_010081: FASTKD3
subclass of: SO_0000673
so part of: FASTKD3
location: join(6249856..6251296,6252010..6252095,6254282..6254456,6255547..6255617)
location: region:6249856-6255617:1
so has part: feature:6249856-6251296:1:exon
so has part: feature:6252010-6252095:1:exon
so has part: feature:6254282-6254456:1:exon
so has part: feature:6255547-6255617:1:exon

XP_038439264.1
type: Protein
SIO_000068: ncbiprotein

position:6255617:1
position: 6255617
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6249856-6251296:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6252010-6252095:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6254282-6254456:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6255547-6255617:1:exon

LOC119867423
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867423
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6265270..6268102)
location: region:6265270-6268102:-1
so has part: feature:6265270-6268102:-1:exon
subclass of: SO_0000011

119867423
type: Gene
SIO_000068: ncbigene

position:6265270:-1
position: 6265270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6268102:-1
position: 6268102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6265270-6268102:-1:exon

LOC119867423
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867423
product: uncharacterized LOC119867423, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XR_005383498.1
SIO_010081: LOC119867423
subclass of: SO_0000673
so part of: LOC119867423
location: complement(join(6265270..6266058,6266206..6266287,6266499..6267101,6267193..6268102))
location: region:6265270-6268102:-1
so has part: feature:6267193-6268102:-1:exon
so has part: feature:6266499-6267101:-1:exon
so has part: feature:6266206-6266287:-1:exon
so has part: feature:6265270-6266058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6267193-6268102:-1:exon

position:6267193:-1
position: 6267193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6266499-6267101:-1:exon

position:6266499:-1
position: 6266499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6267101:-1
position: 6267101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6266206-6266287:-1:exon

position:6266206:-1
position: 6266206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6266287:-1
position: 6266287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6265270-6266058:-1:exon

position:6266058:-1
position: 6266058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC119867423
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867423
product: uncharacterized LOC119867423, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383499.1
SIO_010081: LOC119867423
subclass of: SO_0000673
so part of: LOC119867423
location: complement(join(6265271..6266058,6266206..6266287,6266499..6266750,6266947..6268102))
location: region:6265271-6268102:-1
so has part: feature:6266947-6268102:-1:exon
so has part: feature:6266499-6266750:-1:exon
so has part: feature:6266206-6266287:-1:exon
so has part: feature:6265271-6266058:-1:exon

position:6265271:-1
position: 6265271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6266947-6268102:-1:exon

position:6266947:-1
position: 6266947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6266499-6266750:-1:exon

position:6266750:-1
position: 6266750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6266206-6266287:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6265271-6266058:-1:exon

LOC119867423
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867423
product: uncharacterized LOC119867423, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XR_005383497.1
SIO_010081: LOC119867423
subclass of: SO_0000673
so part of: LOC119867423
location: complement(join(6265271..6266058,6266206..6266287,6266499..6268102))
location: region:6265271-6268102:-1
so has part: feature:6266499-6268102:-1:exon
so has part: feature:6266206-6266287:-1:exon
so has part: feature:6265271-6266058:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6266499-6268102:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6266206-6266287:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6265271-6266058:-1:exon

C34H5orf49
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: C34H5orf49
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6268962..6285310
location: region:6268962-6285310:1
so has part: feature:6268962-6285310:1:exon
subclass of: SO_0000010

607810
type: Gene
SIO_000068: ncbigene

position:6268962:1
position: 6268962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6285310:1
position: 6285310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6268962-6285310:1:exon

C34H5orf49
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: C34H5orf49
product: chromosome 34 C5orf49 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_038583337.1
SIO_010081: C34H5orf49
subclass of: SO_0000673
so part of: C34H5orf49
location: join(6268962..6269135,6283121..6283237,6284834..6285310)
location: region:6268962-6285310:1
so has part: feature:6268962-6269135:1:exon
so has part: feature:6283121-6283237:1:exon
so has part: feature:6284834-6285310:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6268962-6269135:1:exon

position:6269135:1
position: 6269135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6283121-6283237:1:exon

position:6283121:1
position: 6283121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6283237:1
position: 6283237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6284834-6285310:1:exon

position:6284834:1
position: 6284834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C34H5orf49
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: C34H5orf49
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein C5orf49 homolog
translation: MEDDDEEITAGTLRGRPRPLPLSALSAFSYVPPRRLDPTEHSYYHRRGRTGIISLYDCIFKRNPGYNQKLHRDDREHAKSLGLHVNEEERQRPVGVLMSSVYGRRIHQPVEPLNRDHGRASHVKADFYRKNDIPSIKAPSFGHISPA
SIO_010081: C34H5orf49
subclass of: SO_0000673
so part of: C34H5orf49
location: join(6268989..6269135,6283121..6283237,6284834..6285013)
location: region:6268989-6285013:1
so has part: feature:6268989-6269135:1:exon
so has part: feature:6283121-6283237:1:exon
so has part: feature:6284834-6285013:1:exon

XP_038439265.1
type: Protein
SIO_000068: ncbiprotein

position:6268989:1
position: 6268989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6285013:1
position: 6285013
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6268989-6269135:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6283121-6283237:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6284834-6285013:1:exon

ADCY2
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: ADCY2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6288901..6677489)
location: region:6288901-6677489:-1
so has part: feature:6288901-6677489:-1:exon
subclass of: SO_0000010

478624
type: Gene
SIO_000068: ncbigene

position:6288901:-1
position: 6288901
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6677489:-1
position: 6677489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6288901-6677489:-1:exon

ADCY2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: ADCY2
product: adenylate cyclase 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 ESTs, 6 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038583952.1
SIO_010081: ADCY2
subclass of: SO_0000673
so part of: ADCY2
location: complement(join(6288901..6289730,6293961..6294085,6298291..6298405,6309927..6310034,6311741..6311887,6321592..6321750,6326472..6326556,6339420..6339589,6346138..6346257,6352866..6353003,6366171..6366255,6374976..6375073,6377940..6378009,6385602..6385685,6389154..6389197,6393261..6393434,6394366..6394498,6395304..6395462,6400897..6401024,6405449..6405560,6411887..6412035,6475157..6475306,6567698..6567859,6655142..6655339,6677253..6677489))
location: region:6288901-6677489:-1
so has part: feature:6677253-6677489:-1:exon
so has part: feature:6655142-6655339:-1:exon
so has part: feature:6567698-6567859:-1:exon
so has part: feature:6475157-6475306:-1:exon
so has part: feature:6411887-6412035:-1:exon
so has part: feature:6405449-6405560:-1:exon
so has part: feature:6400897-6401024:-1:exon
so has part: feature:6395304-6395462:-1:exon
so has part: feature:6394366-6394498:-1:exon
so has part: feature:6393261-6393434:-1:exon
so has part: feature:6389154-6389197:-1:exon
so has part: feature:6385602-6385685:-1:exon
so has part: feature:6377940-6378009:-1:exon
so has part: feature:6374976-6375073:-1:exon
so has part: feature:6366171-6366255:-1:exon
so has part: feature:6352866-6353003:-1:exon
so has part: feature:6346138-6346257:-1:exon
so has part: feature:6339420-6339589:-1:exon
so has part: feature:6326472-6326556:-1:exon
so has part: feature:6321592-6321750:-1:exon
so has part: feature:6311741-6311887:-1:exon
so has part: feature:6309927-6310034:-1:exon
so has part: feature:6298291-6298405:-1:exon
so has part: feature:6293961-6294085:-1:exon
so has part: feature:6288901-6289730:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6677253-6677489:-1:exon

position:6677253:-1
position: 6677253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6655142-6655339:-1:exon

position:6655142:-1
position: 6655142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6655339:-1
position: 6655339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6567698-6567859:-1:exon

position:6567698:-1
position: 6567698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6567859:-1
position: 6567859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:6475157-6475306:-1:exon

position:6475157:-1
position: 6475157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6475306:-1
position: 6475306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:6411887-6412035:-1:exon

position:6411887:-1
position: 6411887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6412035:-1
position: 6412035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:6405449-6405560:-1:exon

position:6405449:-1
position: 6405449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6405560:-1
position: 6405560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:6400897-6401024:-1:exon

position:6400897:-1
position: 6400897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6401024:-1
position: 6401024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:6395304-6395462:-1:exon

position:6395304:-1
position: 6395304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6395462:-1
position: 6395462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:6394366-6394498:-1:exon

position:6394366:-1
position: 6394366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6394498:-1
position: 6394498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:6393261-6393434:-1:exon

position:6393261:-1
position: 6393261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6393434:-1
position: 6393434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:6389154-6389197:-1:exon

position:6389154:-1
position: 6389154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6389197:-1
position: 6389197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:6385602-6385685:-1:exon

position:6385602:-1
position: 6385602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6385685:-1
position: 6385685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:6377940-6378009:-1:exon

position:6377940:-1
position: 6377940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6378009:-1
position: 6378009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:6374976-6375073:-1:exon

position:6374976:-1
position: 6374976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6375073:-1
position: 6375073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:6366171-6366255:-1:exon

position:6366171:-1
position: 6366171
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6366255:-1
position: 6366255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:6352866-6353003:-1:exon

position:6352866:-1
position: 6352866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6353003:-1
position: 6353003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:6346138-6346257:-1:exon

position:6346138:-1
position: 6346138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6346257:-1
position: 6346257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:6339420-6339589:-1:exon

position:6339420:-1
position: 6339420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6339589:-1
position: 6339589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:6326472-6326556:-1:exon

position:6326472:-1
position: 6326472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6326556:-1
position: 6326556
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:6321592-6321750:-1:exon

position:6321592:-1
position: 6321592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6321750:-1
position: 6321750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:6311741-6311887:-1:exon

position:6311741:-1
position: 6311741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6311887:-1
position: 6311887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:6309927-6310034:-1:exon

position:6309927:-1
position: 6309927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6310034:-1
position: 6310034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:6298291-6298405:-1:exon

position:6298291:-1
position: 6298291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6298405:-1
position: 6298405
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:6293961-6294085:-1:exon

position:6293961:-1
position: 6293961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6294085:-1
position: 6294085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:6288901-6289730:-1:exon

position:6289730:-1
position: 6289730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ADCY2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: ADCY2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: adenylate cyclase type 2 isoform X2
translation: MWRGGDAARRYLRDRAEGGERRGGAADGGGGGGGLPAVRDWLYESYYCMSQQHPLIVFLLLIVMGACLALLAVFFALRLEVEDHVAFLITVPTALAIFFAIFILVCIESVFKKLLRLFSLVIWICLVAMGYLFMCFGGTVSPWDQVSFFLFIIFVVYTMLPFNMRDAIIASVLTSASHTIVLSVCLSATPGAKEHLVWQILANVIIFICGNLAGAYHKHLMELALQQTYQDTCNCIKSRIKLEFEKRQQERLLLSLLPAHIAMEMKAEIIQRLQGPKAGQMENTNNFHNLYVKRHTNVSILYADIVGFTRLASDCSPGELVHMLNELFGKFDQIAKENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDATGVDINMRVGVHSGNVLCGVIGLQKWQYDVWSHDVTLANHMEAGGVPGRVHISSVTLEHLNGAYKVEEGDGDIRDPYLKQHLVKTYFVINPKGERRSPHLFRPRHTLDGAKMRASVRMTRYLESWGAAKPFAHLHHRDSMTTENGKISTTDVPMGQHNFQNRTLRTKSQKKRFEEELNERMIQAIDGINAQSEQWLKSEDIQRISLLFYNKILEKEYRATALPAFKYYVTCACLIFFCIFIVQILVLPKTSILGISFGAAFLLLAFILFICFAGQLLQCSKKASASLLWLLKSSGIIADRPWPRVSLTVLTTAIILTMAVFNMFFLSDPEETIPPTANTSNMSLSALSNQAAILRAQNLFFLPYFIYSCILGLISCSVFLRVNYELKMLIMMVALVAYNTILLHTHAHVLDDYSQVLFERPGIWKDLKTMGSVSLFIFFITLLVLGRQNEYYCRLDFLWKNKFKKEREEIETMENLNRVLLENVLPAHVAEHFLARSLKNEDLYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAVPSQEHAQEPERQYMHIGTMVEFAFALVAKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSVILQTLGYACTCRGIINVKGKGELKTYFVNTEMSRSLSQSNLAS
SIO_010081: ADCY2
subclass of: SO_0000673
so part of: ADCY2
location: complement(join(6289578..6289730,6293961..6294085,6298291..6298405,6309927..6310034,6311741..6311887,6321592..6321750,6326472..6326556,6339420..6339589,6346138..6346257,6352866..6353003,6366171..6366255,6374976..6375073,6377940..6378009,6385602..6385685,6389154..6389197,6393261..6393434,6394366..6394498,6395304..6395462,6400897..6401024,6405449..6405560,6411887..6412035,6475157..6475306,6567698..6567859,6655142..6655339,6677253..6677489))
location: region:6289578-6677489:-1
so has part: feature:6677253-6677489:-1:exon
so has part: feature:6655142-6655339:-1:exon
so has part: feature:6567698-6567859:-1:exon
so has part: feature:6475157-6475306:-1:exon
so has part: feature:6411887-6412035:-1:exon
so has part: feature:6405449-6405560:-1:exon
so has part: feature:6400897-6401024:-1:exon
so has part: feature:6395304-6395462:-1:exon
so has part: feature:6394366-6394498:-1:exon
so has part: feature:6393261-6393434:-1:exon
so has part: feature:6389154-6389197:-1:exon
so has part: feature:6385602-6385685:-1:exon
so has part: feature:6377940-6378009:-1:exon
so has part: feature:6374976-6375073:-1:exon
so has part: feature:6366171-6366255:-1:exon
so has part: feature:6352866-6353003:-1:exon
so has part: feature:6346138-6346257:-1:exon
so has part: feature:6339420-6339589:-1:exon
so has part: feature:6326472-6326556:-1:exon
so has part: feature:6321592-6321750:-1:exon
so has part: feature:6311741-6311887:-1:exon
so has part: feature:6309927-6310034:-1:exon
so has part: feature:6298291-6298405:-1:exon
so has part: feature:6293961-6294085:-1:exon
so has part: feature:6289578-6289730:-1:exon

XP_038439880.1
type: Protein
SIO_000068: ncbiprotein

position:6289578:-1
position: 6289578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6677253-6677489:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6655142-6655339:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6567698-6567859:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:6475157-6475306:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:6411887-6412035:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:6405449-6405560:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:6400897-6401024:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:6395304-6395462:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:6394366-6394498:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:6393261-6393434:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:6389154-6389197:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:6385602-6385685:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:6377940-6378009:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:6374976-6375073:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:6366171-6366255:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:6352866-6353003:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:6346138-6346257:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:6339420-6339589:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:6326472-6326556:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:6321592-6321750:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:6311741-6311887:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:6309927-6310034:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:6298291-6298405:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:6293961-6294085:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:6289578-6289730:-1:exon

LOC119867471
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867471
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6331796..6333736
location: region:6331796-6333736:1
so has part: feature:6331796-6333736:1:exon
subclass of: SO_0000011

119867471
type: Gene
SIO_000068: ncbigene

position:6331796:1
position: 6331796
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6333736:1
position: 6333736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6331796-6333736:1:exon

LOC119867471
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867471
product: uncharacterized LOC119867471, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383681.1
SIO_010081: LOC119867471
subclass of: SO_0000673
so part of: LOC119867471
location: join(6331796..6332650,6333119..6333317,6333682..6333736)
location: region:6331796-6333736:1
so has part: feature:6331796-6332650:1:exon
so has part: feature:6333119-6333317:1:exon
so has part: feature:6333682-6333736:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6331796-6332650:1:exon

position:6332650:1
position: 6332650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6333119-6333317:1:exon

position:6333119:1
position: 6333119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6333317:1
position: 6333317
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6333682-6333736:1:exon

position:6333682:1
position: 6333682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119867471
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867471
product: uncharacterized LOC119867471, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383676.1
SIO_010081: LOC119867471
subclass of: SO_0000673
so part of: LOC119867471
location: join(6331796..6332650,6333150..6333642)
location: region:6331796-6333642:1
so has part: feature:6331796-6332650:1:exon
so has part: feature:6333150-6333642:1:exon

position:6333642:1
position: 6333642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6331796-6332650:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6333150-6333642:1:exon

position:6333150:1
position: 6333150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119867471
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867471
product: uncharacterized LOC119867471, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005383677.1
SIO_010081: LOC119867471
subclass of: SO_0000673
so part of: LOC119867471
location: join(6331803..6331856,6332409..6332650,6333150..6333642)
location: region:6331803-6333642:1
so has part: feature:6331803-6331856:1:exon
so has part: feature:6332409-6332650:1:exon
so has part: feature:6333150-6333642:1:exon

position:6331803:1
position: 6331803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6331803-6331856:1:exon

position:6331856:1
position: 6331856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6332409-6332650:1:exon

position:6332409:1
position: 6332409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6333150-6333642:1:exon

LOC119867471
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867471
product: uncharacterized LOC119867471, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005383678.1
SIO_010081: LOC119867471
subclass of: SO_0000673
so part of: LOC119867471
location: join(6331803..6331856,6332442..6332650,6333150..6333642)
location: region:6331803-6333642:1
so has part: feature:6331803-6331856:1:exon
so has part: feature:6332442-6332650:1:exon
so has part: feature:6333150-6333642:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6331803-6331856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6332442-6332650:1:exon

position:6332442:1
position: 6332442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6333150-6333642:1:exon

LOC119867471
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867471
product: uncharacterized LOC119867471, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383680.1
SIO_010081: LOC119867471
subclass of: SO_0000673
so part of: LOC119867471
location: join(6331804..6331856,6332437..6332650,6333119..6333642)
location: region:6331804-6333642:1
so has part: feature:6331804-6331856:1:exon
so has part: feature:6332437-6332650:1:exon
so has part: feature:6333119-6333642:1:exon

position:6331804:1
position: 6331804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6331804-6331856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6332437-6332650:1:exon

position:6332437:1
position: 6332437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6333119-6333642:1:exon

LOC119867471
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867471
product: uncharacterized LOC119867471, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383679.1
SIO_010081: LOC119867471
subclass of: SO_0000673
so part of: LOC119867471
location: join(6331804..6331856,6332437..6332650,6333150..6333642)
location: region:6331804-6333642:1
so has part: feature:6331804-6331856:1:exon
so has part: feature:6332437-6332650:1:exon
so has part: feature:6333150-6333642:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6331804-6331856:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:6332437-6332650:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6333150-6333642:1:exon

LOC119867424
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119867424
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 6722413..6742280
location: region:6722413-6742280:1
so has part: feature:6722413-6742280:1:exon
subclass of: SO_0000011

119867424
type: Gene
SIO_000068: ncbigene

position:6722413:1
position: 6722413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6742280:1
position: 6742280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6722413-6742280:1:exon

LOC119867424
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867424
product: uncharacterized LOC119867424, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005383500.1
SIO_010081: LOC119867424
subclass of: SO_0000673
so part of: LOC119867424
location: join(6722413..6722534,6738206..6738341,6739145..6742280)
location: region:6722413-6742280:1
so has part: feature:6722413-6722534:1:exon
so has part: feature:6738206-6738341:1:exon
so has part: feature:6739145-6742280:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6722413-6722534:1:exon

position:6722534:1
position: 6722534
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6738206-6738341:1:exon

position:6738206:1
position: 6738206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6738341:1
position: 6738341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6739145-6742280:1:exon

position:6739145:1
position: 6739145
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC119867424
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC119867424
product: uncharacterized LOC119867424, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005383501.1
SIO_010081: LOC119867424
subclass of: SO_0000673
so part of: LOC119867424
location: join(6731196..6731664,6738206..6738341,6739145..6742280)
location: region:6731196-6742280:1
so has part: feature:6731196-6731664:1:exon
so has part: feature:6738206-6738341:1:exon
so has part: feature:6739145-6742280:1:exon

position:6731196:1
position: 6731196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6731196-6731664:1:exon

position:6731664:1
position: 6731664
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6738206-6738341:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6739145-6742280:1:exon

LOC111093963
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC111093963
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(6753146..6761941)
location: region:6753146-6761941:-1
so has part: feature:6753146-6761941:-1:exon
subclass of: SO_0000011

111093963
type: Gene
SIO_000068: ncbigene

position:6753146:-1
position: 6753146
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6761941:-1
position: 6761941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6753146-6761941:-1:exon

LOC111093963
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093963
product: uncharacterized LOC111093963, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_005383502.1
SIO_010081: LOC111093963
subclass of: SO_0000673
so part of: LOC111093963
location: complement(join(6753146..6753456,6756829..6756998,6761800..6761941))
location: region:6753146-6761941:-1
so has part: feature:6761800-6761941:-1:exon
so has part: feature:6756829-6756998:-1:exon
so has part: feature:6753146-6753456:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6761800-6761941:-1:exon

position:6761800:-1
position: 6761800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6756829-6756998:-1:exon

position:6756829:-1
position: 6756829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6756998:-1
position: 6756998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:6753146-6753456:-1:exon

position:6753456:-1
position: 6753456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC111093963
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 9615
nc RNA class: lncRNA
gene: LOC111093963
product: uncharacterized LOC111093963, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XR_005383503.1
SIO_010081: LOC111093963
subclass of: SO_0000673
so part of: LOC111093963
location: complement(join(6753146..6753456,6756829..6756998,6761759..6761941))
location: region:6753146-6761941:-1
so has part: feature:6761759-6761941:-1:exon
so has part: feature:6756829-6756998:-1:exon
so has part: feature:6753146-6753456:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6761759-6761941:-1:exon

position:6761759:-1
position: 6761759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:6756829-6756998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:6753146-6753456:-1:exon

LOC119877855
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC119877855
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 6928385..6929935
location: region:6928385-6929935:1
so has part: feature:6928385-6929935:1:exon

119877855
type: Gene
SIO_000068: ncbigene

position:6928385:1
position: 6928385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6929935:1
position: 6929935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6928385-6929935:1:exon

LOC119877855
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC119877855
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
SIO_010081: LOC119877855
subclass of: SO_0000673
so part of: LOC119877855
location: 6928385..6929935
location: region:6928385-6929935:1
so has part: feature:6928385-6929935:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6928385-6929935:1:exon

LOC102154747
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102154747
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7025149..7025392
location: region:7025149-7025392:1
so has part: feature:7025149-7025392:1:exon

102154747
type: Gene
SIO_000068: ncbigene

position:7025149:1
position: 7025149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7025392:1
position: 7025392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7025149-7025392:1:exon

LOC102154747
type: Exon
subclass of: SO_0000147
RO_0002162: 9615
gene: LOC102154747
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pseudo: true
SIO_010081: LOC102154747
subclass of: SO_0000673
so part of: LOC102154747
location: 7025149..7025392
location: region:7025149-7025392:1
so has part: feature:7025149-7025392:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7025149-7025392:1:exon

LOC102156905
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC102156905
note: Derived by automated computational analysis using gene prediction method: Gnomon.
pseudo: true
so part of: sequence
location: 7111637..7112332
location: region:7111637-7112332:1
so has part: feature:7111637-7112332:1:exon

102156905
type: Gene
SIO_000068: ncbigene

position:7111637:1
position: 7111637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7112332:1
position: 7112332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7111637-7112332:1:exon

LOC102156905
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 9615
gene: LOC102156905
product: transcription factor BTF3-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 80% coverage of the annotated genomic feature by RNAseq alignments
pseudo: true
transcript id: XR_005383504.1
SIO_010081: LOC102156905
so part of: LOC102156905
location: 7111637..7112332
location: region:7111637-7112332:1
so has part: feature:7111637-7112332:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7111637-7112332:1:exon

LOC607847
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: LOC607847
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7157350..7158062)
location: region:7157350-7158062:-1
so has part: feature:7157350-7158062:-1:exon
subclass of: SO_0000010

607847
type: Gene
SIO_000068: ncbigene

position:7157350:-1
position: 7157350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7158062:-1
position: 7158062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7157350-7158062:-1:exon

LOC607847
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: LOC607847
product: glucose-induced degradation protein 8 homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_038583256.1
SIO_010081: LOC607847
subclass of: SO_0000673
so part of: LOC607847
location: complement(7157350..7158062)
location: region:7157350-7158062:-1
so has part: feature:7157350-7158062:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7157350-7158062:-1:exon

LOC607847
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 9615
gene: LOC607847
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
transl except: (pos:complement(7157533..7157535),aa:OTHER)
product: LOW QUALITY PROTEIN: glucose-induced degradation protein 8 homolog
translation: MSYAERPDEITKDEWMEKLNNLHVQRADMNRLIMNYLVTEGFKEAAEKSRMESGIEPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLATNRYLYFHLQQQHLIELIRQRETKAALEFAQTQLAEQGEESRECLTETERTLALLALDNPEELPFGDLLHMMQRXKVWSEVNQAVLDYENHESIPKLAKLLKLLLWAQNELDQKKVKYPKMTDLSKGVIEEPK
SIO_010081: LOC607847
subclass of: SO_0000673
so part of: LOC607847
location: complement(7157356..7158042)
location: region:7157356-7158042:-1
so has part: feature:7157356-7158042:-1:exon

XP_038439184.1
type: Protein
SIO_000068: ncbiprotein

position:7157356:-1
position: 7157356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7158042:-1
position: 7158042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7157356-7158042:-1:exon

TENT4A
type: Gene
subclass of: SO_0000704
RO_0002162: 9615
gene: TENT4A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(7171096..7214777)
location: region:7171096-7214777:-1
so has part: feature:7171096-7214777:-1:exon
subclass of: SO_0000010

488057
type: Gene
SIO_000068: ncbigene

position:7171096:-1
position: 7171096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7214777:-1
position: 7214777
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7171096-7214777:-1:exon

TENT4A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 9615
gene: TENT4A
product: terminal nucleotidyltransferase 4A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
transcript id: XM_038583339.1
SIO_010081: TENT4A
subclass of: SO_0000673
so part of: TENT4A
location: complement(join(7171096..7173407,7174828..7174992,7176284..7176442,7176863..7177035,7177674..7177774,7178784..7178910,7180873..7181086,7183423..7183551,7184689..7184796,7186512..7186632,7187579..7187625,7188988..7189111,7214002..7214777))
location: region:7171096-7214777:-1
so has part: feature:7214002-7214777:-1:exon
so has part: feature:7188988-7189111:-1:exon
so has part: feature:7187579-7187625:-1:exon
so has part: feature:7186512-7186632:-1:exon
so has part: feature:7184689-7184796:-1:exon
so has part: feature:7183423-7183551:-1:exon
so has part: feature:7180873-7181086:-1:exon
so has part: feature:7178784-7178910:-1:exon
so has part: feature:7177674-7177774:-1:exon
so has part: feature:7176863-7177035:-1:exon
so has part: feature:7176284-7176442:-1:exon
so has part: feature:7174828-7174992:-1:exon
so has part: feature:7171096-7173407:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7214002-7214777:-1:exon