Homo sapiens chromosome Y, GRCh38.p14 Primary Assembly.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Finishing the euchromatic sequence of the human genome
The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes
Initial sequencing and analysis of the human genome
REFSEQ INFORMATION: The reference sequence is identical to\nCM000686.2.\n\nOn Feb 3, 2014 this sequence version replaced NC_000024.9.\nAssembly Name: GRCh38.p14 Primary Assembly\nThe DNA sequence is composed of genomic sequence, primarily\nfinished clones that were sequenced as part of the Human Genome\nProject. PCR products and WGS shotgun sequence have been added\nwhere necessary to fill gaps or correct errors. All such additions\nare manually curated by GRC staff. For more information see:\nhttps://genomereference.org.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Updated annotation\nAnnotation Name :: GCF_000001405.40-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n RefSeqFE; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/15/2023\n##Genome-Annotation-Data-END##
H3K4me1 hESC enhancer GRCh37_chrX:187587-188168
Region: biological region; Derived by automated computational analysis using gene prediction method: RefSeqFE.
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:30033119]
H3K4me1 hESC enhancer chrX:187587-188168 (GRCh37/hg19 assembly coordinates)
activates a minimal SCP1, AML or CMV promoter by ChIP-STARR-seq in naive H9 embyronic stem cells {active_cell/tissue: H9 hESC(naive)}
vegetative cell wall protein gp1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol specific phospholipase C X domain containing 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 3
Derived by automated computational analysis using gene prediction method: BestRefSeq.
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 2
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 6
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 4
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X3
COORDINATES: polyA evidence [ECO:0006239]
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X1
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 1
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 7
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant 5
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X4
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X2
PI-PLC X domain-containing protein 1 isoform X1
isoform 1 is encoded by transcript variant 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
PI-PLC X domain-containing protein 1 isoform 1
isoform 1 is encoded by transcript variant 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 1 is encoded by transcript variant 5; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 1 is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 2 is encoded by transcript variant 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
PI-PLC X domain-containing protein 1 isoform 2
GTP binding protein 6 (putative); Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
GTP binding protein 6 (putative), transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 110 ESTs, 202 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 88 samples with support for all annotated introns
GTP binding protein 6 (putative), transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 101 ESTs, 160 long SRA reads, 1 Protein, and 87% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
GTP binding protein 6 (putative), transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 101 ESTs, 160 long SRA reads, 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
GTP binding protein 6 (putative), transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 101 ESTs, 153 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
propagated from UniProtKB/Swiss-Prot (O43824.4); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
putative GTP-binding protein 6 isoform X1
putative GTP-binding protein 6 isoform X2
putative GTP-binding protein 6 isoform X3
long intergenic non-protein coding RNA 685; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 685, transcript variant 1
similar to RNA sequence (same species):RefSeq:NR_027232.1
annotated by transcript or proteomic data
The RefSeq transcript has 4 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 685, transcript variant 2
similar to RNA sequence (same species):RefSeq:NR_027231.1
The RefSeq transcript has 3 substitutions compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
protein phosphatase 2 regulatory subunit B''beta; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
protein phosphatase 2 regulatory subunit B''beta
protein phosphatase 2 regulatory subunit B''beta, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 26 ESTs, 54 long SRA reads, 10 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
protein phosphatase 2 regulatory subunit B''beta, transcript variant X2
protein phosphatase 2 regulatory subunit B''beta, transcript variant X6
protein phosphatase 2 regulatory subunit B''beta, transcript variant X1
protein phosphatase 2 regulatory subunit B''beta, transcript variant X3
protein phosphatase 2 regulatory subunit B''beta, transcript variant X5
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta
propagated from UniProtKB/Swiss-Prot (Q9Y5P8.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X5
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X4
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X3
protein phosphatase 2 regulatory subunit B''beta, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 6 long SRA reads, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X2
H3K27ac-H3K4me1 hESC enhancer chrY:273658-274173 (GRCh37/hg19 assembly coordinates)
activates a minimal SCP1, AML or CMV promoter by ChIP-STARR-seq in primed H9 embyronic stem cells {active_cell/tissue: H9 hESC(primed)}
H3K27ac-H3K4me1 hESC enhancer chrX:323668-324173 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:274174-274688
H3K27ac-H3K4me1 hESC enhancer chrY:274174-274688 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:335885-336775
H3K27ac-H3K4me1 hESC enhancer chrX:335885-336775 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:357819-358704
H3K27ac-H3K4me1 hESC enhancer chrX:357819-358704 (GRCh37/hg19 assembly coordinates)
uncharacterized LOC102724521; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC102724521, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 83% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC102724521, transcript variant X1
H3K4me1 hESC enhancer GRCh37_chrX:396687-397186
H3K4me1 hESC enhancer chrX:396687-397186 (GRCh37/hg19 assembly coordinates)
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:26631348]
CNE-5 PCR-amplified reporter construct fragment
enhancer in human U2OS osteosarcoma cells
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:19997128]
EXISTENCE:sequence alignment evidence [ECO:0000200][PMID:21731768]
conserved region; CRCNE00011074 more deeply conserved sub-region
conserved region; CRCNE00011082 more deeply conserved sub-region
OCT4-NANOG hESC enhancers GRCh37_chrX:406609-407442 and GRCh37_chrY:356916-357447
OCT4-NANOG hESC enhancer chrX:406609-407442 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer chrY:356916-357447 (GRCh37/hg19 assembly coordinates)
CNE-3 PCR-amplified reporter construct fragment
activates a SHOX promoter by reporter assays in human U2OS osteosarcoma cells {active_cell/tissue: U2OS}
activates a beta-globin promoter by in ovo reporter assays in chicken limb buds {active_cell/tissue: limb bud}
H3K27ac-H3K4me1 hESC enhancer chrX:460511-461078 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:461079-461645
H3K27ac-H3K4me1 hESC enhancer chrX:461079-461645 (GRCh37/hg19 assembly coordinates)
fatty acid binding protein 5 pseudogene 13; Derived by automated computational analysis using gene prediction method: Curated Genomic.
keratin 18 pseudogene 53; Derived by automated computational analysis using gene prediction method: Curated Genomic.
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:19997128, PMID:26631348]
CNE-2 PCR-amplified reporter construct fragment
enhancer in ovo in chicken limb buds, and in human U2OS osteosarcoma cells
conserved region; CRCNE00011089 more deeply conserved sub-region
OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrY:534047-534914
OCT4-NANOG-H3K4me1 hESC enhancer chrY:534047-534914 (GRCh37/hg19 assembly coordinates)
short stature homeobox; Derived by automated computational analysis using gene prediction method: BestRefSeq.
short stature homeobox, transcript variant 2
short stature homeobox, transcript variant 1
isoform SHOXb is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
short stature homeobox protein isoform SHOXb
propagated from UniProtKB/Swiss-Prot (O15266.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
isoform SHOXa is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
short stature homeobox protein isoform SHOXa
propagated from UniProtKB/Swiss-Prot (O15266.1); Region: SH3-binding. /evidence=ECO:0000255
propagated from UniProtKB/Swiss-Prot (O15266.1); Region: OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138
EXISTENCE:chromatin immunoprecipitation-seq evidence [ECO:0000229][PMID:25395542]
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing in the germ cells of some male individuals with the PRDM9 A/A, PRDM9 A/B and PRDM9 A/C genotypes
EXISTENCE:DNA detection assay evidence [ECO:0005519][PMID:12089524]
crossovers mapped in sperm cells of males of northern European ancestry
nucleotide motif; similarity to the predicted 16-mer PRDM9 C-type binding motif, CCNCNNTNNNCNTNNC; Derived by automated computational analysis using gene prediction method: RefSeqFE.
H3K4me1 hESC enhancer GRCh37_chrY:639405-639905
H3K4me1 hESC enhancer chrY:639405-639905 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrY:644837-645338
H3K4me1 hESC enhancer chrY:644837-645338 (GRCh37/hg19 assembly coordinates)
EXISTENCE:transgenic organism evidence [ECO:0001131][PMID:21731768]
enhancer in day 2 and day 3 zebrafish embryo fin, cardiovascular system, brain, skin, muscle, notochord and ear
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:17200153, PMID:26631348, PMID:22791839]
CNE4 PCR-amplified reporter construct fragment
conserved region; CRCNE00011095 more deeply conserved sub-region
CRCNE00011095 PCR-amplified transgene fragment
enhancer in day 2 and day 3 zebrafish embryo skin, with some activity in fin, muscle and heart
EXISTENCE:transgenic organism evidence [ECO:0001131][PMID:23575226]
activates a beta-globin promoter in mouse E11.5-E12.5 neural tissue, especially in hindbrain {active_cell/tissue: hindbrain(E11.5-E12.5) | neural(E11.5-E12.5)}
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:17200153, PMID:22791839, PMID:26631348]
activates a SHOX or beta-globin promoter in ovo in chicken limb buds, in day 2 and day 3 zebrafish embryo brain, skin, heart, fins, muscle, notochord and eye, and in human U2OS osteosarcoma cells {active_cell/tissue: limb bud | brain(d2-d3) | skin(d2-d3) | heart(d2-d3) | fin(d2-d3) | muscle(d2-d3) | notochord(d2-d3) | eye(d2-d3) | U2OS}
conserved region; CRCNE00011075 more deeply conserved sub-region
conserved region; CRCNE00011096 more deeply conserved sub-region
conserved region; CRCNE00011097 more deeply conserved sub-region
NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:701295-702011 (GRCh37/hg19 assembly coordinates)
conserved region; CRCNE00011098 more deeply conserved sub-region
conserved region; CRCNE00011099 more deeply conserved sub-region
H3K4me1 hESC enhancer GRCh37_chrX:753798-754298
H3K4me1 hESC enhancer chrX:753798-754298 (GRCh37/hg19 assembly coordinates)
enhancer in diverse tissues in zebrafish embryos, especially heart and ear at day 2, and muscle, ear, eye and heart at day 3
conserved region; CRCNE00011100 more deeply conserved sub-region
SHOX downstream enhancer, distal recombination region
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing on the X chromosome in the germ cells of some male individuals with the PRDM9 A/A genotype
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing on the Y chromosome in the germ cells of some male individuals with the PRDM9 A/A and PRDM9 A/B genotypes
EXISTENCE:nucleotide sequencing assay evidence [ECO:0000219][PMID:22791839]
distal breakpoint sub-region, recombines with the proximal breakpoint sub-region within the SHOX downstream enhancer, proximal recombination region, resulting in a recurrent 47.5 kb deletion
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:22791839]
ECR1 PCR-amplified reporter construct fragment
enhancer in zebrafish embryos in day 2 skin, and in day 2 and day 3 brain, fin and cardiovascular system
conserved region; CRCNE00011101 more deeply conserved sub-region
conserved region; CRCNE00011102 more deeply conserved sub-region
enhancer in day 2 and day 3 zebrafish embryo skin, fin, central nervous system, muscle and heart
conserved region; CRCNE00011103 more deeply conserved sub-region
18796 nt extended CNE9 fragment from 19kbCNE9-betalacZ transgene
enhancer in mouse E13.5 embryo fore and hind limbs, mostly restricted to the zeugopodium, also weakly in hindbrain, and in E13.5-14.5 radius and ulna mesenchyme
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing on the Y chromosome in the germ cells of some male individuals with the PRDM9 A/A genotype
SHOX downstream enhancer, proximal recombination region
direction; reverse; Derived by automated computational analysis using gene prediction method: RefSeqFE.
proximal breakpoint sub-region, recombines with the distal breakpoint sub-region within the SHOX downstream enhancer, distal recombination region, resulting in a recurrent 47.5 kb deletion
nucleotide motif; similarity to the predicted 13-mer PRDM9 A binding motif (LD hotspot motif), CCNCCNTNNCCNC; Derived by automated computational analysis using gene prediction method: RefSeqFE.
enhancer in day 2 and day 3 zebrafish embryo eye, fin and blood
CNE9 fragment from short CNE9-betalacZ transgene
enhancer in mouse E12.5 neural tissues, including hindbrain and neural tube
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:16385461, PMID:17200153, PMID:22791839, PMID:26631348]
CNE9 or ECS4 reporter construct fragment
conserved region; CRCNE00011104 more deeply conserved sub-region
conserved region; CRCNE00011105 more deeply conserved sub-region
H3K4me1 hESC enhancer GRCh37_chrX:941763-942262
H3K4me1 hESC enhancer chrX:941763-942262 (GRCh37/hg19 assembly coordinates)
H3K27ac hESC enhancer chrY:908292-908926 (GRCh37/hg19 assembly coordinates)
H3K27ac hESC enhancer chrX:958477-959001 (GRCh37/hg19 assembly coordinates)
H3K27ac hESC enhancer GRCh37_chrX:959002-959525
H3K27ac hESC enhancer chrX:959002-959525 (GRCh37/hg19 assembly coordinates)
ribosomal protein L14 pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
NANOG hESC enhancer GRCh37_chrX:1104952-1105491
NANOG hESC enhancer chrX:1104952-1105491 (GRCh37/hg19 assembly coordinates)
repetin pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
H3K4me1 hESC enhancer GRCh37_chrX:1252013-1252514
H3K4me1 hESC enhancer chrX:1252013-1252514 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrX:1252515-1253014
H3K4me1 hESC enhancer chrX:1252515-1253014 (GRCh37/hg19 assembly coordinates)
60S ribosomal protein L6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
cytokine receptor like factor 2; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
cytokine receptor like factor 2, transcript variant 2
cytokine receptor like factor 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
cytokine receptor like factor 2, transcript variant 3
cytokine receptor like factor 2, transcript variant 1
cytokine receptor-like factor 2 isoform X1
isoform 1 precursor is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
cytokine receptor-like factor 2 isoform 1 precursor
COORDINATES: ab initio prediction:SignalP:4.0
Cytokine receptor-like factor 2. /id=PRO_0000011041
propagated from UniProtKB/Swiss-Prot (Q9HC73.1)
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q9HC73.1); glycosylation site
propagated from UniProtKB/Swiss-Prot (Q9HC73.1); Region: WSXWS motif
propagated from UniProtKB/Swiss-Prot (Q9HC73.1); transmembrane region
propagated from UniProtKB/Swiss-Prot (Q9HC73.1); Region: Box 1 motif
propagated from UniProtKB/Swiss-Prot (Q9HC73.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
isoform 2 is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
cytokine receptor-like factor 2 isoform 2
NANOG-H3K4me1 hESC enhancer chrY:1273405-1274254 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer chrX:1324089-1324592 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K4me1 hESC enhancer chrY:1274255-1275102 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer chrX:1367406-1367922 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer chrY:1317424-1317933 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:1330085-1330594
NANOG hESC enhancer chrY:1330085-1330594 (GRCh37/hg19 assembly coordinates)
alphaGMR; CD116; CDw116; CSF2R; CSF2RAX; CSF2RAY; CSF2RX; CSF2RY; GM-CSF-R-alpha; GMCSFR; GMCSFR-alpha; GMR; GMR-alpha; SMDP4
colony stimulating factor 2 receptor subunit alpha; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
colony stimulating factor 2 receptor subunit alpha, transcript variant 21
colony stimulating factor 2 receptor subunit alpha, transcript variant 17
colony stimulating factor 2 receptor subunit alpha, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 19 long SRA reads, 3 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant 20
colony stimulating factor 2 receptor subunit alpha, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 9 long SRA reads, 1 Protein, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant 22
colony stimulating factor 2 receptor subunit alpha, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 ESTs, 28 long SRA reads, 3 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant 23
colony stimulating factor 2 receptor subunit alpha, transcript variant 19
colony stimulating factor 2 receptor subunit alpha, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 14 long SRA reads, 3 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 9 long SRA reads, 1 Protein, and 74% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 9 long SRA reads, 1 Protein, and 74% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 ESTs, 25 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 20 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 13 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 13 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
colony stimulating factor 2 receptor subunit alpha, transcript variant 25
colony stimulating factor 2 receptor subunit alpha, transcript variant 13
colony stimulating factor 2 receptor subunit alpha, transcript variant 1
colony stimulating factor 2 receptor subunit alpha, transcript variant 27
colony stimulating factor 2 receptor subunit alpha, transcript variant 3
colony stimulating factor 2 receptor subunit alpha, transcript variant 11
colony stimulating factor 2 receptor subunit alpha, transcript variant 6
colony stimulating factor 2 receptor subunit alpha, transcript variant 7
colony stimulating factor 2 receptor subunit alpha, transcript variant 8
colony stimulating factor 2 receptor subunit alpha, transcript variant 2
colony stimulating factor 2 receptor subunit alpha, transcript variant 4
colony stimulating factor 2 receptor subunit alpha, transcript variant 18
colony stimulating factor 2 receptor subunit alpha, transcript variant 24
colony stimulating factor 2 receptor subunit alpha, transcript variant 16
colony stimulating factor 2 receptor subunit alpha, transcript variant 12
colony stimulating factor 2 receptor subunit alpha, transcript variant 15
colony stimulating factor 2 receptor subunit alpha, transcript variant 26
colony stimulating factor 2 receptor subunit alpha, transcript variant 10
colony stimulating factor 2 receptor subunit alpha, transcript variant 9
colony stimulating factor 2 receptor subunit alpha, transcript variant 14
colony stimulating factor 2 receptor subunit alpha, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 13 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
isoform l precursor is encoded by transcript variant 21; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform l precursor
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (P15509.1); glycosylation site
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:18692472; propagated from UniProtKB/Swiss-Prot (P15509.1); glycosylation site
propagated from UniProtKB/Swiss-Prot (P15509.1); Region: WSXWS motif
propagated from UniProtKB/Swiss-Prot (P15509.1); transmembrane region
propagated from UniProtKB/Swiss-Prot (P15509.1); Region: Box 1 motif
isoform l precursor is encoded by transcript variant 20; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X6
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X3
isoform k precursor is encoded by transcript variant 19; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform k precursor
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2
isoform m precursor is encoded by transcript variant 22; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform m precursor
isoform m precursor is encoded by transcript variant 23; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform i precursor is encoded by transcript variant 17; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform i precursor
isoform b precursor is encoded by transcript variant 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform b precursor
propagated from UniProtKB/Swiss-Prot (P15509.1)
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform b
isoform f precursor is encoded by transcript variant 13; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform f precursor
isoform f precursor is encoded by transcript variant 12; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform f precursor is encoded by transcript variant 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform f
isoform a precursor is encoded by transcript variant 16; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform a precursor
Granulocyte-macrophage colony-stimulating factor receptor subunit alpha. /id=PRO_0000010872
isoform a precursor is encoded by transcript variant 15; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform a precursor is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform a
isoform a precursor is encoded by transcript variant 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform a precursor is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform j precursor is encoded by transcript variant 18; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform j precursor
isoform n precursor is encoded by transcript variant 24; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform n precursor
isoform g precursor is encoded by transcript variant 14; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform g precursor
isoform g precursor is encoded by transcript variant 9; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform g
isoform c precursor is encoded by transcript variant 27; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform c precursor
isoform c precursor is encoded by transcript variant 25; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform c precursor is encoded by transcript variant 26; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X5
isoform c precursor is encoded by transcript variant 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform c
isoform e precursor is encoded by transcript variant 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform e precursor
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform e
colony stimulating factor 2 receptor subunit alpha, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 8 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X4
isoform h is encoded by transcript variant 10; Derived by automated computational analysis using gene prediction method: BestRefSeq.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform h
uncharacterized LOC124905238; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
microRNA 3690; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA, 5S ribosomal pseudogene 498; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CD123; hIL-3Ra; IL3R; IL3RAY; IL3RX; IL3RY
interleukin 3 receptor subunit alpha; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
interleukin 3 receptor subunit alpha, transcript variant 1
interleukin 3 receptor subunit alpha, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, 36 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
interleukin 3 receptor subunit alpha, transcript variant 2
interleukin 3 receptor subunit alpha, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 30 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 108 samples with support for all annotated introns
interleukin 3 receptor subunit alpha, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 25 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 111 samples with support for all annotated introns
uncharacterized LOC101928032; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC101928032, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC101928032, transcript variant X10
uncharacterized LOC101928032, transcript variant X7
uncharacterized LOC101928032, transcript variant X1
uncharacterized LOC101928032, transcript variant X2
uncharacterized LOC101928032, transcript variant X3
uncharacterized LOC101928032, transcript variant X16
uncharacterized LOC101928032, transcript variant X11
uncharacterized LOC101928032, transcript variant X8
uncharacterized LOC101928032, transcript variant X12
uncharacterized LOC101928032, transcript variant X5
uncharacterized LOC101928032, transcript variant X6
uncharacterized LOC101928032, transcript variant X13
uncharacterized LOC101928032, transcript variant X4
interleukin 3 receptor subunit alpha, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 ESTs, 24 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 109 samples with support for all annotated introns
interleukin 3 receptor subunit alpha, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 23 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 112 samples with support for all annotated introns
interleukin-3 receptor subunit alpha isoform X1
interleukin-3 receptor subunit alpha isoform X2
interleukin-3 receptor subunit alpha isoform 1 precursor
Interleukin-3 receptor subunit alpha. /id=PRO_0000010883
propagated from UniProtKB/Swiss-Prot (P26951.1)
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:25043189, ECO:0007744|PDB:4JZJ; propagated from UniProtKB/Swiss-Prot (P26951.1); glycosylation site
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (P26951.1); glycosylation site
propagated from UniProtKB/Swiss-Prot (P26951.1); Region: WSXWS motif
propagated from UniProtKB/Swiss-Prot (P26951.1); transmembrane region
propagated from UniProtKB/Swiss-Prot (P26951.1); Region: Box 1 motif
interleukin-3 receptor subunit alpha isoform X3
interleukin-3 receptor subunit alpha isoform X4
isoform 2 precursor is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
interleukin-3 receptor subunit alpha isoform 2 precursor
interleukin-3 receptor subunit alpha isoform 2
uncharacterized LOC101928032, transcript variant X14
uncharacterized LOC101928032, transcript variant X15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC101928032, transcript variant X18
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 65% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC101928032, transcript variant X17
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
solute carrier family 25 member 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
N-acetylmethionine. /evidence=ECO:0007744|PubMed:22223895; propagated from UniProtKB/Swiss-Prot (P12236.4); acetylation site
N-acetylthreonine, in ADP/ATP translocase 3, N-terminally processed. /evidence=ECO:0000269|Ref.4, ECO:0007744|PubMed:19413330, ECO:0007744|PubMed:22223895, ECO:0007744|PubMed:25944712; propagated from UniProtKB/Swiss-Prot (P12236.4); acetylation site
propagated from UniProtKB/Swiss-Prot (P12236.4); Region: Solcar 1
propagated from UniProtKB/Swiss-Prot (P12236.4); transmembrane region
N6,N6,N6-trimethyllysine. /evidence=ECO:0000269|PubMed:31213526, ECO:0007744|PubMed:24129315; propagated from UniProtKB/Swiss-Prot (P12236.4); methylation site
N6-acetyllysine. /evidence=ECO:0007744|PubMed:19608861; propagated from UniProtKB/Swiss-Prot (P12236.4); acetylation site
propagated from UniProtKB/Swiss-Prot (P12236.4); Region: Solcar 2
propagated from UniProtKB/Swiss-Prot (P12236.4); Region: Solcar 3
propagated from UniProtKB/Swiss-Prot (P12236.4); Region: Important for transport activity. /evidence=ECO:0000250|UniProtKB:P12235
propagated from UniProtKB/Swiss-Prot (P12236.4); Region: Nucleotide carrier signature motif. /evidence=ECO:0000250|UniProtKB:P02722
NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:1510270-1510865
NANOG-H3K27ac-H3K4me1 hESC enhancer chrX:1510270-1510865 (GRCh37/hg19 assembly coordinates)
activates a minimal SCP1, AML or CMV promoter by ChIP-STARR-seq in naive and primed H9 embyronic stem cells {active_cell/tissue: H9 hESC(naive and primed)}
NANOG-H3K27ac-H3K4me1 hESC enhancer chrX:1510866-1511460 (GRCh37/hg19 assembly coordinates)
serine/arginine repetitive matrix protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/arginine repetitive matrix protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
serine/arginine repetitive matrix protein 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized protein LOC124900597 isoform X2
NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:1460904-1461506 (GRCh37/hg19 assembly coordinates)
long intergenic non-protein coding RNA 106; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 106
ASMTL antisense RNA 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
ASMTL antisense RNA 1, transcript variant 1
ASMTL antisense RNA 1, transcript variant 2
acetylserotonin O-methyltransferase like; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
acetylserotonin O-methyltransferase like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78 ESTs, 434 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
acetylserotonin O-methyltransferase like, transcript variant 2
acetylserotonin O-methyltransferase like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 152 ESTs, 1372 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
acetylserotonin O-methyltransferase like, transcript variant 3
acetylserotonin O-methyltransferase like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78 ESTs, 433 long SRA reads, 1 Protein, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
acetylserotonin O-methyltransferase like, transcript variant 1
acetylserotonin O-methyltransferase like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 80 ESTs, 473 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
acetylserotonin O-methyltransferase like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 79 ESTs, 461 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
isoform 3 is encoded by transcript variant 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform 3
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform 1
propagated from UniProtKB/Swiss-Prot (O95671.3); Region: MAF-like
Phosphoserine. /evidence=ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569; propagated from UniProtKB/Swiss-Prot (O95671.3); phosphorylation site
Important for substrate specificity, for pyrophosphatase activity. /evidence=ECO:0000305|PubMed:24210219; propagated from UniProtKB/Swiss-Prot (O95671.3); other site
Phosphoserine. /evidence=ECO:0007744|PubMed:24275569; propagated from UniProtKB/Swiss-Prot (O95671.3); phosphorylation site
Phosphothreonine. /evidence=ECO:0007744|PubMed:24275569; propagated from UniProtKB/Swiss-Prot (O95671.3); phosphorylation site
propagated from UniProtKB/Swiss-Prot (O95671.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
propagated from UniProtKB/Swiss-Prot (O95671.3); Region: ASMT-like
Phosphoserine. /evidence=ECO:0007744|PubMed:23186163; propagated from UniProtKB/Swiss-Prot (O95671.3); phosphorylation site
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X3
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform 2
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X4
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X2
P2Y receptor family member 8; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
P2Y receptor family member 8, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 538 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
P2Y receptor family member 8, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 521 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
P2Y receptor family member 8, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 521 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
P2Y receptor family member 8, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 521 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000269|PubMed:19349973; propagated from UniProtKB/Swiss-Prot (Q86VZ1.1); glycosylation site
propagated from UniProtKB/Swiss-Prot (Q86VZ1.1); transmembrane region
propagated from UniProtKB/Swiss-Prot (Q86VZ1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
H3K4me1 hESC enhancer GRCh37_chrX:1585389-1585889
H3K4me1 hESC enhancer chrX:1585389-1585889 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrX:1600455-1601166 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer chrY:1550663-1551162 (GRCh37/hg19 assembly coordinates)
721P; AKAP-17A; CCDC133; CXYorf3; DXYS155E; PRKA17A; SFRS17A; XE7; XE7Y
A-kinase anchoring protein 17A; Derived by automated computational analysis using gene prediction method: BestRefSeq.
A-kinase anchoring protein 17A, transcript variant 2
A-kinase anchoring protein 17A, transcript variant 1
propagated from UniProtKB/Swiss-Prot (Q02040.2); Region: PKA-RI and PKA-RII subunit binding domain
propagated from UniProtKB/Swiss-Prot (Q02040.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
propagated from UniProtKB/Swiss-Prot (Q02040.2); Region: PKA-RI-alpha subunit binding domain
Phosphoserine. /evidence=ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569; propagated from UniProtKB/Swiss-Prot (Q02040.2); phosphorylation site
Phosphoserine. /evidence=ECO:0007744|PubMed:21406692; propagated from UniProtKB/Swiss-Prot (Q02040.2); phosphorylation site
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:1678358-1678942
H3K27ac-H3K4me1 hESC enhancer chrY:1678358-1678942 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:1678943-1679525
H3K27ac-H3K4me1 hESC enhancer chrY:1678943-1679525 (GRCh37/hg19 assembly coordinates)
acetylserotonin O-methyltransferase; Derived by automated computational analysis using gene prediction method: BestRefSeq.
acetylserotonin O-methyltransferase, transcript variant 1
acetylserotonin O-methyltransferase, transcript variant 4
acetylserotonin O-methyltransferase, transcript variant 3
acetylserotonin O-methyltransferase isoform 1
isoform 3 is encoded by transcript variant 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
acetylserotonin O-methyltransferase isoform 3
isoform 2 is encoded by transcript variant 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
acetylserotonin O-methyltransferase isoform 2
OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrX:1737403-1738040
OCT4-NANOG-H3K4me1 hESC enhancer chrX:1737403-1738040 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:1718443-1718962
OCT4-NANOG-H3K27ac hESC enhancer chrY:1718443-1718962 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrX:1776191-1776692
H3K4me1 hESC enhancer chrX:1776191-1776692 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrX:1776693-1777192
H3K4me1 hESC enhancer chrX:1776693-1777192 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:1747612-1748179
OCT4-NANOG hESC enhancer chrY:1747612-1748179 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrY:1778143-1778642
H3K4me1 hESC enhancer chrY:1778143-1778642 (GRCh37/hg19 assembly coordinates)
long intergenic non-protein coding RNA 2968; Derived by automated computational analysis using gene prediction method: Gnomon.
long intergenic non-protein coding RNA 2968, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 long SRA reads, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
long intergenic non-protein coding RNA 2968, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 long SRA reads, and 93% coverage of the annotated genomic feature by RNAseq alignments
long intergenic non-protein coding RNA 2968, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 4 long SRA reads, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
long intergenic non-protein coding RNA 2968, transcript variant X1
long intergenic non-protein coding RNA 2968, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 3 long SRA reads, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
long intergenic non-protein coding RNA 2968, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 long SRA reads, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
H3K4me1 hESC enhancer GRCh37_chrX:1883833-1884333
H3K4me1 hESC enhancer chrX:1883833-1884333 (GRCh37/hg19 assembly coordinates)
uncharacterized LOC105379413; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105379413, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 long SRA reads, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC105379413, transcript variant X2
H3K4me1 hESC enhancer GRCh37_chrY:1935791-1936290
H3K4me1 hESC enhancer chrY:1935791-1936290 (GRCh37/hg19 assembly coordinates)
uncharacterized LOC107985677; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 83% coverage of the annotated genomic feature by RNAseq alignments
H3K27ac hESC enhancer GRCh37_chrY:1956524-1957311
H3K27ac hESC enhancer chrY:1956524-1957311 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrX:2035872-2036372
H3K4me1 hESC enhancer chrX:2035872-2036372 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:1993758-1994466
OCT4-NANOG-H3K27ac hESC enhancer chrY:1993758-1994466 (GRCh37/hg19 assembly coordinates)
NANOG-H3K4me1 hESC enhancer GRCh37_chrY:2010123-2010650
NANOG-H3K4me1 hESC enhancer chrY:2010123-2010650 (GRCh37/hg19 assembly coordinates)
CXorf11; DHRS5X; DHRS5Y; DHRSXY; DHRSY; SDR46C1; SDR7C6
dehydrogenase/reductase X-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
dehydrogenase/reductase SDR family member on chromosome X
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:2170834-2171344
H3K27ac-H3K4me1 hESC enhancer chrX:2170834-2171344 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:2171345-2171853
H3K27ac-H3K4me1 hESC enhancer chrX:2171345-2171853 (GRCh37/hg19 assembly coordinates)
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:2180646-2181480
H3K27ac-H3K4me1 hESC enhancer chrX:2180646-2181480 (GRCh37/hg19 assembly coordinates)
uncharacterized LOC124905239; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
NANOG-H3K27ac hESC enhancer chrX:2309773-2310384 (GRCh37/hg19 assembly coordinates)
NANOG-H3K27ac hESC enhancer chrY:2259846-2260410 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrX:2311094-2311904
H3K4me1 hESC enhancer chrX:2311094-2311904 (GRCh37/hg19 assembly coordinates)
zinc finger BED-type containing 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger BED-type containing 1, transcript variant 2
zinc finger BED-type containing 1, transcript variant 1
zinc finger BED-type containing 1, transcript variant 3
propagated from UniProtKB/Swiss-Prot (O96006.1); Region: Required for interaction with human adenovirus early E1A protein. /evidence=ECO:0000269|PubMed:25210186
propagated from UniProtKB/Swiss-Prot (O96006.1); Region: Nuclear localization signal. /evidence=ECO:0000269|PubMed:17209048
propagated from UniProtKB/Swiss-Prot (O96006.1); Region: Required for DNA binding. /evidence=ECO:0000269|PubMed:17209048
propagated from UniProtKB/Swiss-Prot (O96006.1); Region: Required for nuclear localization and homodimerization. /evidence=ECO:0000269|PubMed:17209048
propagated from UniProtKB/Swiss-Prot (O96006.1); Region: Required for the formation of higher order complexes of ZBED1 with consensus DNA binding sequences. /evidence=ECO:0000269|PubMed:17209048
H3K4me1 hESC enhancer GRCh37_chrX:2467730-2468457
H3K4me1 hESC enhancer chrX:2467730-2468457 (GRCh37/hg19 assembly coordinates)
uncharacterized LOC101928092; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC101928092, transcript variant X4
uncharacterized LOC101928092, transcript variant X1
uncharacterized LOC101928092, transcript variant X5
uncharacterized LOC101928092, transcript variant X3
uncharacterized LOC101928092, transcript variant X2
H3K4me1 hESC enhancer GRCh37_chrX:2501116-2501616
H3K4me1 hESC enhancer chrX:2501116-2501616 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer chrX:2501617-2502117 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer chrY:2451809-2452308 (GRCh37/hg19 assembly coordinates)
H3K4me1 hESC enhancer GRCh37_chrY:2476579-2477103
H3K4me1 hESC enhancer chrY:2476579-2477103 (GRCh37/hg19 assembly coordinates)
microRNA 6089; Derived by automated computational analysis using gene prediction method: BestRefSeq.
CD99 molecule pseudogene 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
CD99 molecule pseudogene 1, transcript variant 1
CD99 molecule pseudogene 1, transcript variant 2
long intergenic non-protein coding RNA 102; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 102
CD99 molecule (Xg blood group); Derived by automated computational analysis using gene prediction method: BestRefSeq.
CD99 molecule (Xg blood group), transcript variant 3
CD99 molecule (Xg blood group), transcript variant 1
CD99 molecule (Xg blood group), transcript variant 5
CD99 molecule (Xg blood group), transcript variant 7
CD99 molecule (Xg blood group), transcript variant 2
CD99 molecule (Xg blood group), transcript variant 6
CD99 molecule (Xg blood group), transcript variant 4
isoform d precursor is encoded by transcript variant 5; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform f precursor is encoded by transcript variant 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform b precursor is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
XG pseudogene, Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA, U6 small nuclear 1334, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sex determining region Y; Derived by automated computational analysis using gene prediction method: BestRefSeq.
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Sufficient for interaction with KPNB1. /evidence=ECO:0000269|PubMed:15297880
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Required for nuclear localization. /evidence=ECO:0000269|PubMed:12764225, ECO:0000269|PubMed:15746192
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Sufficient for interaction with EP300. /evidence=ECO:0000269|PubMed:15297880
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Required for nuclear localization. /evidence=ECO:0000269|PubMed:15297880
N6-acetyllysine. /evidence=ECO:0000269|PubMed:15297880; propagated from UniProtKB/Swiss-Prot (Q05066.1); acetylation site
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Necessary for interaction with ZNF208 isoform KRAB-O. /evidence=ECO:0000269|PubMed:15469996
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
propagated from UniProtKB/Swiss-Prot (Q05066.1); Region: Necessary for interaction with SLC9A3R2. /evidence=ECO:0000269|PubMed:9054412
EXISTENCE:transgenic organism evidence [ECO:0001131][PMID:16411204, PMID:22539273]
drives expression in the genital ridge, migrating truncal neural crest cells, and epiblast
EXISTENCE:protein binding evidence [ECO:0000024][PMID:19902333]
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:8434602]
EXISTENCE:protein binding evidence [ECO:0000024][PMID:9815658]
EXISTENCE:nuclease protection assay evidence [ECO:0001106][PMID:9582429]
EXISTENCE:protein binding evidence [ECO:0000024][PMID:9582429]
EXISTENCE:protein binding evidence [ECO:0000024][PMID:11207191]
NHR1 (nuclear hormone receptor site 1); -327 to -298 SF1 site
nuclear receptor subfamily 5 group A member 1
positive regulation of transcription; antagonized by cyclic AMP
ribonuclease H2 subunit C pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
Derived by automated computational analysis using gene prediction method: Curated Genomic.
EXISTENCE:transgenic organism evidence [ECO:0001131][PMID:16411204]
required for expression in the genital ridge
TOMM22 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ribosomal protein S4 Y-linked 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
ribosomal protein S4 Y-linked 1, transcript variant X1
heat shock transcription factor Y-linked 3, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
nucleosome assembly protein 1 like 1 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
zinc finger protein Y-linked, transcript variant 1
zinc finger protein Y-linked, transcript variant 8
zinc finger protein Y-linked, transcript variant 5
zinc finger protein Y-linked, transcript variant 2
zinc finger protein Y-linked, transcript variant 12
zinc finger protein Y-linked, transcript variant X1
zinc finger protein Y-linked, transcript variant 7
zinc finger protein Y-linked, transcript variant 4
zinc finger protein Y-linked, transcript variant 9
zinc finger protein Y-linked, transcript variant 3
zinc finger protein Y-linked, transcript variant 11
zinc finger protein Y-linked, transcript variant 6
zinc finger protein Y-linked, transcript variant 10
zinc finger protein Y-linked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 2 ESTs, 260 long SRA reads, 166 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
zinc finger Y-chromosomal protein isoform X1
zinc finger Y-chromosomal protein isoform 1
Phosphoserine. /evidence=ECO:0000250|UniProtKB:P17012; propagated from UniProtKB/Swiss-Prot (P08048.3); phosphorylation site
isoform 5 is encoded by transcript variant 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger Y-chromosomal protein isoform 5
isoform 5 is encoded by transcript variant 9; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger Y-chromosomal protein isoform 3
isoform 6 is encoded by transcript variant 11; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger Y-chromosomal protein isoform 6
isoform 4 is encoded by transcript variant 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger Y-chromosomal protein isoform 4
isoform 4 is encoded by transcript variant 5; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 4 is encoded by transcript variant 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 2 is encoded by transcript variant 10; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger Y-chromosomal protein isoform 2
ZFY antisense RNA 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 7 is encoded by transcript variant 12; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger Y-chromosomal protein isoform 7
eukaryotic translation elongation factor 1 alpha 1 pseudogene 41; Derived by automated computational analysis using gene prediction method: Curated Genomic.
long intergenic non-protein coding RNA 278; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 278
OCT4-NANOG hESC enhancer GRCh37_chrY:2956017-2956558
OCT4-NANOG hESC enhancer chrY:2956017-2956558 (GRCh37/hg19 assembly coordinates)
1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG hESC enhancer GRCh37_chrY:3293771-3294308
OCT4-NANOG hESC enhancer chrY:3293771-3294308 (GRCh37/hg19 assembly coordinates)
proline rich coiled-coil 2C pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
TGFB induced factor homeobox 2 like Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
TGFB induced factor homeobox 2 like Y-linked
propagated from UniProtKB/Swiss-Prot (Q8IUE0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
USP12 pseudogene Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ring finger protein 19B pseudogene Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377227; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377227, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, and 15% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC105377227, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 long SRA reads, and 29% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC105377227, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 long SRA reads, and 44% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
HERV-FRD provirus ancestral Env polyprotein pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
UBE2V1 pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U6 small nuclear 303, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
microRNA 9985; Derived by automated computational analysis using gene prediction method: BestRefSeq.
SERPINE1 mRNA binding protein 1 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:4822044-4822666
NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:4822044-4822666 (GRCh37/hg19 assembly coordinates)
protocadherin 11 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
protocadherin 11 Y-linked, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 mRNAs, 1 EST, 46 long SRA reads, 19 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
protocadherin 11 Y-linked, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 mRNAs, 1 EST, 43 long SRA reads, 19 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
protocadherin 11 Y-linked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 mRNAs, 1 EST, 43 long SRA reads, 19 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
protocadherin 11 Y-linked, transcript variant e
protocadherin 11 Y-linked, transcript variant d
protocadherin 11 Y-linked, transcript variant a
RNA, U2 small nuclear 57, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
isoform a is encoded by transcript variant a; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform a is encoded by transcript variant d; Derived by automated computational analysis using gene prediction method: BestRefSeq.
protocadherin 11 Y-linked, transcript variant b
protocadherin 11 Y-linked, transcript variant c
isoform c precursor is encoded by transcript variant c; Derived by automated computational analysis using gene prediction method: BestRefSeq.
protocadherin-11 Y-linked isoform c precursor
/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q9BZA8.1)
Protocadherin-11 Y-linked. /id=PRO_0000232764
propagated from UniProtKB/Swiss-Prot (Q9BZA8.1)
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q9BZA8.1); glycosylation site
propagated from UniProtKB/Swiss-Prot (Q9BZA8.1); transmembrane region
propagated from UniProtKB/Swiss-Prot (Q9BZA8.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
isoform b precursor is encoded by transcript variant b; Derived by automated computational analysis using gene prediction method: BestRefSeq.
protocadherin-11 Y-linked isoform b precursor
isoform d is encoded by transcript variant e; Derived by automated computational analysis using gene prediction method: BestRefSeq.
voltage dependent anion channel 1 pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
NANOG hESC enhancer GRCh37_chrY:5192864-5193440
NANOG hESC enhancer chrY:5192864-5193440 (GRCh37/hg19 assembly coordinates)
eukaryotic translation initiation factor 4A1 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
keratin 18 pseudogene 10; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sorting nexin 3 pseudogene 1 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG hESC enhancer GRCh37_chrY:5577568-5578528
OCT4-NANOG hESC enhancer chrY:5577568-5578528 (GRCh37/hg19 assembly coordinates)
ribosomal protein L26 pseudogene 37; Derived by automated computational analysis using gene prediction method: Curated Genomic.
TUSC2 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
DLGAP5 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 23B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 23B
testis specific protein Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 80% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
testis-specific Y-encoded protein 2 isoform X1
testis-specific Y-encoded protein 2 isoform X2
family with sequence similarity 197 Y-linked member 9; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 9
testis specific protein Y-linked 11, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 19, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member G, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
long intergenic non-protein coding RNA 280; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 280
uncharacterized LOC107987353; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987353, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 65% coverage of the annotated genomic feature by RNAseq alignments
testis-specific transcript, Y-linked 1B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 2B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 21B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 21B
CLONE795723; LINC00129; NCRNA00129; TTTY7A; TTTY7B; TTY7
testis-specific transcript, Y-linked 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 8B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis specific protein Y-linked 17, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sorcin pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
GOT2 pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
amelogenin Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
amelogenin Y-linked, transcript variant 1
amelogenin Y-linked, transcript variant 2
amelogenin, Y isoform isoform 1 precursor
amelogenin, Y isoform isoform 2 precursor
propagated from UniProtKB/Swiss-Prot (Q99218.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
ATP synthase peripheral stalk subunit F6 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
transducin beta like 1 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
transducin beta like 1 Y-linked, transcript variant 1
transducin beta like 1 Y-linked, transcript variant 3
transducin beta like 1 Y-linked, transcript variant 2
family with sequence similarity 199, Y-linked, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
F-box-like/WD repeat-containing protein TBL1Y
N-acetylserine. /evidence=ECO:0000250|UniProtKB:Q9BZK7; propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); acetylation site
N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:Q8BHJ5; propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); acetylation site
Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9BZK7; propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); phosphorylation site
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 1
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 2
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 3
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 4
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 5
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 6
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 7
propagated from UniProtKB/Swiss-Prot (Q9BQ87.1); Region: WD 8
P300/CBP strongly-dependent group 1 enhancer GRCh37_chrY:6931456-6932655
EXISTENCE:reporter gene assay evidence [ECO:0000049][PMID:35650434]
P300/CBP strongly-dependent group 1 enhancer chrY:6931456-6932655 (GRCh37/hg19 assembly coordinates)
activates an origin of replication core promoter dependent on BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP, by STARR-seq in HCT116 cells {active_cell/tissue: HCT116}
G protein-coupled receptor 143 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MED14-independent group 3 enhancer GRCh37_chrY:6975278-6976477
MED14-independent group 3 enhancer chrY:6975278-6976477 (GRCh37/hg19 assembly coordinates)
activates an origin of replication core promoter dependent on BRD2, BRD4, P300/CBP and CDK7 cofactors, and independent of MED14, by STARR-seq in HCT116 cells {active_cell/tissue: HCT116}
protein kinase Y-linked (pseudogene); Derived by automated computational analysis using gene prediction method: BestRefSeq.
RN7SK pseudogene 282; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U6 small nuclear 941, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U6 small nuclear 521, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987338; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: cap analysis [ECO:0007248] and polyA evidence [ECO:0006239]
testis-specific transcript, Y-linked 26, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member H, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 12, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 16; Derived by automated computational analysis using gene prediction method: BestRefSeq.
raftlin, lipid raft linker 1 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987339; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
testis-specific transcript, Y-linked 12; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 12, transcript variant 2
testis-specific transcript, Y-linked 12, transcript variant 1
uncharacterized LOC105377229; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 52% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
tripartite motif containing 60 pseudogene 1, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 92 pseudogene 1, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tripartite motif containing 60 pseudogene 2, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 8, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
basic charge Y-linked 2D, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 7, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 9, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member J, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 8 member A7, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 30, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member K, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 24, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 6, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-ND6 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-CYB pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-ND1 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
nuclear-encoded mitochondrial tRNA-Gln (TTG) 8-1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-ND2 pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377231; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377231, transcript variant X1
uncharacterized LOC105377231, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
tripartite motif containing 60 pseudogene 3, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 10, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 27, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377232; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987354; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 82% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
long intergenic non-protein coding RNA 279; Derived by automated computational analysis using gene prediction method: BestRefSeq.
long intergenic non-protein coding RNA 279
uncharacterized LOC107987340; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific transcript, Y-linked 18; Derived by automated computational analysis using gene prediction method: BestRefSeq.
uncharacterized LOC105377234; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377234, transcript variant X1
testis-specific transcript, Y-linked 19; Derived by automated computational analysis using gene prediction method: BestRefSeq.
uncharacterized LOC105377235; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
testis-specific transcript, Y-linked 11; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 2 member M, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 31, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 24, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1P19; OFD1P19Y; OFD1P3; OFD1PY19; OFD1PY3; OFDYP3
OFD1 pseudogene 3 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing in the germ cells of some male individuals with PRDM9 AA and PRDM9 AB genotypes
EXISTENCE:fluorescence in situ hybridization evidence [ECO:0001047][PMID:23643616]
EXISTENCE:nucleotide sequencing assay evidence [ECO:0000219][PMID:23643616]
sub-region WHT5557, recombines with sub-region WHT5557' within the IR4 Yq recombination region
chromodomain Y-linked 3 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 22; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105379264; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105379265; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105379266; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105379267; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif protein Y-linked family 1 member A3, pseudogene; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 1 member A3, pseudogene
RNA binding motif protein Y-linked family 1 member G, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 20; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis specific protein Y-linked 4; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 4, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 30 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 4, transcript variant X3
testis specific protein Y-linked 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
testis-specific Y-encoded protein 4 isoform X1
testis-specific Y-encoded protein 4 isoform X2
family with sequence similarity 197 Y-linked member 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 8
testis specific protein Y-linked 8; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 8, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 30 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 8, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 81% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 8, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis-specific Y-encoded protein 8 isoform X1
testis-specific Y-encoded protein 8 isoform X2
family with sequence similarity 197 Y-linked member 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 7
testis specific protein Y-linked 7, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 197 Y-linked member 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 6
testis specific protein Y-linked 3; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 35 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 3, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 81% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis-specific Y-encoded protein 3 isoform X1
testis-specific Y-encoded protein 3 isoform X2
family with sequence similarity 197 Y-linked member 5; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 5
testis specific protein Y-linked 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 1, transcript variant 2
testis specific protein Y-linked 1, transcript variant 1
testis specific protein Y-linked 1, transcript variant X2
testis specific protein Y-linked 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis specific protein Y-linked 1, transcript variant 3
isoform TSPY-S is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific Y-encoded protein 1 isoform TSPY-S
testis-specific Y-encoded protein 1 isoform 3
isoform TSPY-L is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific Y-encoded protein 1 isoform TSPY-L
testis-specific Y-encoded protein 1 isoform X1
family with sequence similarity 197 Y-linked member 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 4
testis specific protein Y-linked 9; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 9, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 75% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis-specific Y-encoded protein 9 isoform X1
family with sequence similarity 197 Y-linked member 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 3
testis specific protein Y-linked 6, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 197 Y-linked member 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 197 Y-linked member 2
testis specific protein Y-linked 10; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
testis specific protein Y-linked 10, transcript variant 2
testis specific protein Y-linked 10, transcript variant 1
testis specific protein Y-linked 10, transcript variant X2
testis specific protein Y-linked 10, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 81% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
testis-specific Y-encoded protein 10 isoform 1
testis-specific Y-encoded protein 10 isoform 2
testis-specific Y-encoded protein 10 isoform X1
testis specific protein Y-linked 15, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 3 member A, pseudogene; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 3 member A, pseudogene
testis specific protein Y-linked 25, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 16, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 7B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 21; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
uncharacterized LOC107987342; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987342, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, and 77% coverage of the annotated genomic feature by RNAseq alignments
testis-specific transcript, Y-linked 22; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 2 member N, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 18, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 13, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 23; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 2 member O, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member Q, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 20, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 5, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG hESC enhancer GRCh37_chrY:9908937-9909527
OCT4-NANOG hESC enhancer chrY:9908937-9909527 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:9920919-9921420
NANOG hESC enhancer chrY:9920919-9921420 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:9923678-9924274
OCT4-NANOG hESC enhancer chrY:9923678-9924274 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:9924275-9924871
OCT4-NANOG hESC enhancer chrY:9924275-9924871 (GRCh37/hg19 assembly coordinates)
RNA, 5S ribosomal pseudogene 518; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, 5S ribosomal pseudogene 519; Derived by automated computational analysis using gene prediction method: Curated Genomic.
NANOG hESC enhancer GRCh37_chrY:9953369-9953870
NANOG hESC enhancer chrY:9953369-9953870 (GRCh37/hg19 assembly coordinates)
mitochondrial ribosomal protein L57 pseudogene 10; Derived by automated computational analysis using gene prediction method: Curated Genomic.
double homeobox 4 like 31 (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
cell division cycle 27 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
serine/threonine-protein phosphatase 1 regulatory subunit 10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
RNA, 18S ribosomal pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, 5.8S ribosomal pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG hESC enhancer GRCh37_chrY:10042185-10043105
OCT4-NANOG hESC enhancer chrY:10042185-10043105 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:10043106-10044025
OCT4-NANOG hESC enhancer chrY:10043106-10044025 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:10044179-10044680
NANOG hESC enhancer chrY:10044179-10044680 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:10066524-10067025
NANOG hESC enhancer chrY:10066524-10067025 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:10067975-10068955
OCT4-NANOG hESC enhancer chrY:10067975-10068955 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:10070642-10071143
NANOG hESC enhancer chrY:10070642-10071143 (GRCh37/hg19 assembly coordinates)
Linear centromere model derived predominantly from reads generated in PMID: 17803354. This region does not represent an actual centromere sequence, as long-range ordering of repeats and unmapped WGS contigs is not provided by the model. For details of model production, see http://arxiv.org/abs/1307.0035.
OCT4-NANOG hESC enhancer GRCh37_chrY:13137114-13137752
OCT4-NANOG hESC enhancer chrY:13137114-13137752 (GRCh37/hg19 assembly coordinates)
CDRT15 pseudogene 10; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC100419952; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987335; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
MT-CO3 pseudogene 37; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-CO1 pseudogene 37; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tektin 4 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
SOWAHC pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
long intergenic non-protein coding RNA 268-2, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ankyrin repeat domain 20 family member A6, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sorting nexin 18 pseudogene 1, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105379273; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105379273, transcript variant X1
OCT4 hESC enhancer GRCh37_chrY:13420602-13421103
OCT4 hESC enhancer chrY:13420602-13421103 (GRCh37/hg19 assembly coordinates)
OCT4 hESC enhancer GRCh37_chrY:13437625-13438126
OCT4 hESC enhancer chrY:13437625-13438126 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:13451421-13451922
NANOG hESC enhancer chrY:13451421-13451922 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13452784-13453400
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13452784-13453400 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13453401-13454018
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13453401-13454018 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13454019-13454634
OCT4-NANOG hESC enhancer chrY:13454019-13454634 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13455253-13455869
OCT4-NANOG hESC enhancer chrY:13455253-13455869 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13455870-13456486
OCT4-NANOG hESC enhancer chrY:13455870-13456486 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13457795-13458468
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13457795-13458468 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13458469-13459144
OCT4-NANOG-H3K27ac hESC enhancer chrY:13458469-13459144 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13459145-13459818
OCT4-NANOG-H3K27ac hESC enhancer chrY:13459145-13459818 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13460644-13461144
OCT4-NANOG-H3K27ac hESC enhancer chrY:13460644-13461144 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13461145-13461645
OCT4-NANOG-H3K27ac hESC enhancer chrY:13461145-13461645 (GRCh37/hg19 assembly coordinates)
double homeobox 4 like 16 (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4 hESC enhancer GRCh37_chrY:13464807-13465308
OCT4 hESC enhancer chrY:13464807-13465308 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13467551-13468052
OCT4-NANOG-H3K27ac hESC enhancer chrY:13467551-13468052 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13468053-13468552
OCT4-NANOG-H3K27ac hESC enhancer chrY:13468053-13468552 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13468738-13469298
OCT4-NANOG hESC enhancer chrY:13468738-13469298 (GRCh37/hg19 assembly coordinates)
double homeobox 4 like 17 (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4 hESC enhancer GRCh37_chrY:13474202-13474721
OCT4 hESC enhancer chrY:13474202-13474721 (GRCh37/hg19 assembly coordinates)
OCT4 hESC enhancer GRCh37_chrY:13476301-13476802
OCT4 hESC enhancer chrY:13476301-13476802 (GRCh37/hg19 assembly coordinates)
double homeobox 4 like 18 (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13481354-13482029
OCT4-NANOG-H3K27ac hESC enhancer chrY:13481354-13482029 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13482030-13482704
OCT4-NANOG-H3K27ac hESC enhancer chrY:13482030-13482704 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13483089-13483606
OCT4-NANOG hESC enhancer chrY:13483089-13483606 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:13483918-13484419
NANOG hESC enhancer chrY:13483918-13484419 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13485338-13485872
OCT4-NANOG hESC enhancer chrY:13485338-13485872 (GRCh37/hg19 assembly coordinates)
double homeobox 4 like 19 (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13488397-13488934
H3K27ac-H3K4me1 hESC enhancer chrY:13488397-13488934 (GRCh37/hg19 assembly coordinates)
poly(A) binding protein cytoplasmic 1 pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
solute carrier family 9 member B1 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ACTR3B pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CHEK2 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-ND1 pseudogene 12; Derived by automated computational analysis using gene prediction method: Curated Genomic.
immunoglobulin kappa variable 1/ORY-1 (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG hESC enhancer GRCh37_chrY:13643820-13644423
OCT4-NANOG hESC enhancer chrY:13643820-13644423 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13648683-13649233
OCT4-NANOG hESC enhancer chrY:13648683-13649233 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13649367-13649930
OCT4-NANOG hESC enhancer chrY:13649367-13649930 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13650329-13651026
OCT4-NANOG hESC enhancer chrY:13650329-13651026 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13658561-13659553
OCT4-NANOG hESC enhancer chrY:13658561-13659553 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13705193-13705723
OCT4-NANOG hESC enhancer chrY:13705193-13705723 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13705724-13706253
OCT4-NANOG hESC enhancer chrY:13705724-13706253 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13717077-13717586
OCT4-NANOG hESC enhancer chrY:13717077-13717586 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13800862-13801435
OCT4-NANOG hESC enhancer chrY:13800862-13801435 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13801979-13802577
OCT4-NANOG hESC enhancer chrY:13801979-13802577 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13802634-13803513
OCT4-NANOG hESC enhancer chrY:13802634-13803513 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13804526-13805100
OCT4-NANOG hESC enhancer chrY:13804526-13805100 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13808039-13808988
OCT4-NANOG hESC enhancer chrY:13808039-13808988 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13809373-13809948
OCT4-NANOG hESC enhancer chrY:13809373-13809948 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13809949-13810523
OCT4-NANOG hESC enhancer chrY:13809949-13810523 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13842212-13842741
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13842212-13842741 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13842742-13843270
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13842742-13843270 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13843290-13844258
OCT4-NANOG hESC enhancer chrY:13843290-13844258 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13850673-13851318
OCT4-NANOG hESC enhancer chrY:13850673-13851318 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13851319-13851964
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13851319-13851964 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:13851965-13852609
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:13851965-13852609 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13856042-13857000
OCT4-NANOG hESC enhancer chrY:13856042-13857000 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13857207-13857742
OCT4-NANOG hESC enhancer chrY:13857207-13857742 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:13857743-13858278
OCT4-NANOG hESC enhancer chrY:13857743-13858278 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13866363-13867346
OCT4-NANOG-H3K27ac hESC enhancer chrY:13866363-13867346 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13867347-13868330
OCT4-NANOG-H3K27ac hESC enhancer chrY:13867347-13868330 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:13868331-13869314
OCT4-NANOG-H3K27ac hESC enhancer chrY:13868331-13869314 (GRCh37/hg19 assembly coordinates)
regulator of chromosome condensation 2 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
argininosuccinate synthetase 1 pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
matrix remodeling associated 5 Y-linked (pseudogene); Derived by automated computational analysis using gene prediction method: Curated Genomic.
ribosomal protein S24 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
arylsulfatase F pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, 7SL, cytoplasmic 702, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
direction; forward; Derived by automated computational analysis using gene prediction method: RefSeqFE.
meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing in the germ cells of some male individuals with PRDM9 A/A, PRDM9 A/B and PRDM9 A/C genotypes
EXISTENCE:DNA dot blot assay evidence [ECO:0005522][PMID:1634226]
EXISTENCE:nucleotide sequencing assay evidence [ECO:0000219][PMID:11030762, PMID:11001932, PMID:12554687]
sub-region ID1 (identical sequence 1), recombines with sub-region ID1' (identical sequence 1') within the AZFa HERV15yq2 recombination region
EXISTENCE:nucleotide sequencing assay evidence [ECO:0000219][PMID:11030762, PMID:11001932]
sub-region ID2 (identical sequence 2), recombines with sub-region ID2' (identical sequence 2') within the AZFa HERV15yq2 recombination region
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing in the germ cells of some male individuals with PRDM9 A/A and PRDM9 A/B genotypes
family with sequence similarity 8 member A4, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
arylsulfatase L pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
arylsulfatase D pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987343; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
glycogenin 2 pseudogene 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
glycoprotein Xg-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
XG pseudogene, Y-linked 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
shroom family member 2 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
mediator complex subunit 14 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC112268311; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC112268311, transcript variant X2
uncharacterized LOC112268311, transcript variant X1
testis-specific transcript, Y-linked 15; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 15, transcript variant 1
testis-specific transcript, Y-linked 15, transcript variant 4
testis-specific transcript, Y-linked 15, transcript variant 5
testis-specific transcript, Y-linked 15, transcript variant 2
testis-specific transcript, Y-linked 15, transcript variant 3
ubiquitin specific peptidase 9 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
ubiquitin specific peptidase 9 Y-linked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs, 674 long SRA reads, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
probable ubiquitin carboxyl-terminal hydrolase FAF-Y isoform X2
probable ubiquitin carboxyl-terminal hydrolase FAF-Y
propagated from UniProtKB/Swiss-Prot (O00507.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q93008; propagated from UniProtKB/Swiss-Prot (O00507.2); phosphorylation site
Phosphothreonine. /evidence=ECO:0000250|UniProtKB:Q93008; propagated from UniProtKB/Swiss-Prot (O00507.2); phosphorylation site
Phosphotyrosine. /evidence=ECO:0000250|UniProtKB:Q93008; propagated from UniProtKB/Swiss-Prot (O00507.2); phosphorylation site
ubiquitin specific peptidase 9 Y-linked, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 ESTs, 667 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
probable ubiquitin carboxyl-terminal hydrolase FAF-Y isoform X1
chromodomain Y-linked 4 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
DEAD-box helicase 3 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
DEAD-box helicase 3 Y-linked, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 116 ESTs, 2895 long SRA reads, 20 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
DEAD-box helicase 3 Y-linked, transcript variant 1
DEAD-box helicase 3 Y-linked, transcript variant 7
DEAD-box helicase 3 Y-linked, transcript variant 6
DEAD-box helicase 3 Y-linked, transcript variant 5
DEAD-box helicase 3 Y-linked, transcript variant 9
DEAD-box helicase 3 Y-linked, transcript variant 2
DEAD-box helicase 3 Y-linked, transcript variant 4
DEAD-box helicase 3 Y-linked, transcript variant 10
DEAD-box helicase 3 Y-linked, transcript variant 8
DEAD-box helicase 3 Y-linked, transcript variant X3
isoform 1 is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
ATP-dependent RNA helicase DDX3Y isoform 1
propagated from UniProtKB/Swiss-Prot (O15523.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
N-acetylserine. /evidence=ECO:0000250|UniProtKB:O00571; propagated from UniProtKB/Swiss-Prot (O15523.2); acetylation site
N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:Q62167; propagated from UniProtKB/Swiss-Prot (O15523.2); acetylation site
Phosphoserine. /evidence=ECO:0000250|UniProtKB:O00571; propagated from UniProtKB/Swiss-Prot (O15523.2); phosphorylation site
Omega-N-methylarginine. /evidence=ECO:0000250|UniProtKB:Q62167; propagated from UniProtKB/Swiss-Prot (O15523.2); methylation site
Phosphotyrosine. /evidence=ECO:0000250|UniProtKB:Q62167; propagated from UniProtKB/Swiss-Prot (O15523.2); phosphorylation site
propagated from UniProtKB/Swiss-Prot (O15523.2); Region: Q motif
propagated from UniProtKB/Swiss-Prot (O15523.2); Region: DEAD box
Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q62095; propagated from UniProtKB/Swiss-Prot (O15523.2); phosphorylation site
Omega-N-methylarginine. /evidence=ECO:0000250|UniProtKB:O00571; propagated from UniProtKB/Swiss-Prot (O15523.2); methylation site
ATP-dependent RNA helicase DDX3Y isoform X1
ATP-dependent RNA helicase DDX3Y isoform 3
ATP-dependent RNA helicase DDX3Y isoform X3
DEAD-box helicase 3 Y-linked, transcript variant 12
DEAD-box helicase 3 Y-linked, transcript variant 11
DEAD-box helicase 3 Y-linked, transcript variant 13
DEAD-box helicase 3 Y-linked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 891 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns
DEAD-box helicase 3 Y-linked, transcript variant 3
ATP-dependent RNA helicase DDX3Y isoform 2
ATP-dependent RNA helicase DDX3Y isoform X2
DEAD-box helicase 3 Y-linked, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 ESTs, 1375 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
ATP-dependent RNA helicase DDX3Y isoform X4
calcium/calmodulin dependent serine protein kinase pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
splicing factor proline and glutamine rich pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC112268312; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC112268312, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC112268312, transcript variant X2
uncharacterized LOC112268312, transcript variant X3
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing in the germ cells of some male individuals with PRDM9 A/A, PRDM9 A/B and PRDM9 A/C genotypes
sub-region ID1' (identical sequence 1'), recombines with sub-region ID1 (identical sequence 1) within the AZFa HERV15yq1 recombination region
sub-region ID2' (identical sequence 2'), recombines with sub-region ID2 (identical sequence 2) within the AZFa HERV15yq1 recombination region
TGF-beta activated kinase 1/MAP3K7 binding protein 3 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
developmental pluripotency associated 2 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 21 ESTs, 555 long SRA reads, 100 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 532 long SRA reads, 85 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 552 long SRA reads, 89 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 533 long SRA reads, 85 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 21 ESTs, 539 long SRA reads, 93 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 585 long SRA reads, 84 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 535 long SRA reads, 84 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 ESTs, 576 long SRA reads, 90 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 534 long SRA reads, 86 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 80
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 79
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 92
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 78
isoform 28 is encoded by transcript variant 80; Derived by automated computational analysis using gene prediction method: BestRefSeq.
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 1
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 2
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 3
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 4
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 5
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 6
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 7
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: TPR 8
propagated from UniProtKB/Swiss-Prot (O14607.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
Phosphothreonine. /evidence=ECO:0000269|PubMed:24798337; propagated from UniProtKB/Swiss-Prot (O14607.2); phosphorylation site
27 is encoded by transcript variant 79; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 26 is encoded by transcript variant 78; Derived by automated computational analysis using gene prediction method: BestRefSeq.
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X18
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X20
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X17
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X15
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X14
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 20
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 43
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 57
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 32
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 64
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 30
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 69
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 65
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 55
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 76
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 16
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 52
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 5
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 35
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 14
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 38
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 19
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 77
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 34
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 12
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 25
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 60
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 26
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 56
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 61
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 40
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 59
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 18
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 3
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 22
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 72
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 71
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 29
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 58
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 8
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 6
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 39
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 36
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 49
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 45
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 67
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 15
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 66
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 13
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 534 long SRA reads, 86 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 9
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 10
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 23
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 50
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 41
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 53
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 31
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 73
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 21
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 11
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 7
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 74
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 37
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 24
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 63
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 17
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 48
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 42
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 ESTs, 533 long SRA reads, 87 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 502 long SRA reads, 87 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 46
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 44
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 68
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 75
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 51
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 28
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 70
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 27
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 47
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 54
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 62
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 33
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X19
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 21 ESTs, 568 long SRA reads, 101 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 545 long SRA reads, 90 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 508 long SRA reads, 86 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 84
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 83
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 81
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 82
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 4
isoform 32 is encoded by transcript variant 84; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 29 is encoded by transcript variant 81; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 20 is encoded by transcript variant 20; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 16 is encoded by transcript variant 16; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 5 is encoded by transcript variant 5; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 14 is encoded by transcript variant 14; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 19 is encoded by transcript variant 19; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 12 is encoded by transcript variant 12; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 18 is encoded by transcript variant 18; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 8 is encoded by transcript variant 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 6 is encoded by transcript variant 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 15 is encoded by transcript variant 15; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 13 is encoded by transcript variant 13; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 9 is encoded by transcript variant 9; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 10 is encoded by transcript variant 10; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 21 is encoded by transcript variant 21; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 11 is encoded by transcript variant 11; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 7 is encoded by transcript variant 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 30 is encoded by transcript variant 82; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 17 is encoded by transcript variant 17; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 4 is encoded by transcript variant 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 25 is encoded by transcript variant 25; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 22 is encoded by transcript variant 22; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 23 is encoded by transcript variant 23; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 31 is encoded by transcript variant 83; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 24 is encoded by transcript variant 24; Derived by automated computational analysis using gene prediction method: BestRefSeq.
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 489 long SRA reads, 84 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X21
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 465 long SRA reads, 84 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
proteasome subunit alpha 6 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 2
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X27
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 514 long SRA reads, 90 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X24
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 465 long SRA reads, 84 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 93
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X23
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 465 long SRA reads, 85 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X25
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 13 ESTs, 488 long SRA reads, 85 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X29
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 464 long SRA reads, 84 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X30
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 478 long SRA reads, 97 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 1
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X28
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 466 long SRA reads, 83 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant X26
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 464 long SRA reads, 85 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 91
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 90
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 88
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 89
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 87
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 86
ubiquitously transcribed tetratricopeptide repeat containing, Y-linked, transcript variant 85
isoform 39 is encoded by transcript variant 91; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 38 is encoded by transcript variant 90; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 36 is encoded by transcript variant 88; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 37 is encoded by transcript variant 89; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 35 is encoded by transcript variant 87; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 34 is encoded by transcript variant 86; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 33 is encoded by transcript variant 85; Derived by automated computational analysis using gene prediction method: BestRefSeq.
microRNA 12120; Derived by automated computational analysis using gene prediction method: BestRefSeq.
H3K27ac hESC enhancer GRCh37_chrY:15676931-15677431
H3K27ac hESC enhancer chrY:15676931-15677431 (GRCh37/hg19 assembly coordinates)
thymosin beta 4 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
propagated from UniProtKB/Swiss-Prot (O14604.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
PSIP1 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
anosmin 2, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
variable charge Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
Region: putative bipartite nuclear localization signal
variable charge Y-linked 1B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
patatin like phospholipase domain containing 4 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
patatin-like phospholipase domain containing 4 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MED14-independent group 3 enhancer GRCh37_chrY:16452370-16453569
MED14-independent group 3 enhancer chrY:16452370-16453569 (GRCh37/hg19 assembly coordinates)
neuroligin 4 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
neuroligin 4 Y-linked, transcript variant 13
neuroligin 4 Y-linked, transcript variant 7
neuroligin 4 Y-linked, transcript variant 10
neuroligin 4 Y-linked, transcript variant 3
neuroligin 4 Y-linked, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 95 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neuroligin 4 Y-linked, transcript variant 1
neuroligin 4 Y-linked, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 225 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 219 long SRA reads, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 220 long SRA reads, 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 217 long SRA reads, 18 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neuroligin 4 Y-linked, transcript variant 9
neuroligin 4 Y-linked, transcript variant 6
neuroligin 4 Y-linked, transcript variant 14
neuroligin 4 Y-linked, transcript variant 8
neuroligin 4 Y-linked, transcript variant 11
neuroligin 4 Y-linked, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 251 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant 12
neuroligin 4 Y-linked, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 42 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 93 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 261 long SRA reads, 17 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 239 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 230 long SRA reads, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 224 long SRA reads, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
neuroligin 4 Y-linked, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 217 long SRA reads, 6 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
neuroligin 4 Y-linked, transcript variant 2
isoform 4 is encoded by transcript variant 8; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 4 is encoded by transcript variant 13; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 1 precursor is encoded by transcript variant 9; Derived by automated computational analysis using gene prediction method: BestRefSeq.
neuroligin-4, Y-linked isoform 1 precursor
/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1)
Neuroligin-4, Y-linked. /id=PRO_0000008649
propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1)
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1); glycosylation site
propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1); Region: Interaction with NRXN1. /evidence=ECO:0000250
propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1); transmembrane region
Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q62889; propagated from UniProtKB/Swiss-Prot (Q8NFZ3.1); phosphorylation site
isoform 1 precursor is encoded by transcript variant 10; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 1 precursor is encoded by transcript variant 11; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 1 precursor is encoded by transcript variant 12; Derived by automated computational analysis using gene prediction method: BestRefSeq.
isoform 1 precursor is encoded by transcript variant 14; Derived by automated computational analysis using gene prediction method: BestRefSeq.
The cleavage site of the signal peptide has not been experimentally determined.
neuroligin-4, Y-linked isoform 2 precursor
AGK pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
neuroligin 4 Y-linked, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 214 long SRA reads, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
NLGN4Y antisense RNA 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
mediator complex subunit 13 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CYCS pseudogene 46; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987355; Derived by automated computational analysis using gene prediction method: Gnomon.
pseudouridine 5'-phosphatase pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
steroid sulfatase (microsomal) pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
small nucleolar RNA SNORA20; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00401
Derived by automated computational analysis using gene prediction method: cmsearch.
RNA, U6 small nuclear 109, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U6 small nuclear 184, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MED14-independent group 3 enhancer GRCh37_chrY:19155795-19156994
MED14-independent group 3 enhancer chrY:19155795-19156994 (GRCh37/hg19 assembly coordinates)
NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:19177943-19178550
NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:19177943-19178550 (GRCh37/hg19 assembly coordinates)
NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:19178551-19179158
NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:19178551-19179158 (GRCh37/hg19 assembly coordinates)
surfeit 6 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 35; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 41 member A, Y-linked 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 41 member A, Y-linked 1
tubulin beta 1 class VI pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377217; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
RNA, 5S ribosomal pseudogene 520; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, 5S ribosomal pseudogene 521; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 224 member B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 224 member B
clustered mitochondria homolog pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
TATA-box binding protein associated factor 9 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377218; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC124905302; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 11% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
chromodomain Y-linked 5 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 36; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
actin gamma 1 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked, pseudogene; Derived by automated computational analysis using gene prediction method: BestRefSeq.
USP9Y pseudogene 23; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 27; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U1 small nuclear 128, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 1 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 2B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific chromodomain protein Y 2
propagated from UniProtKB/Swiss-Prot (Q9Y6F7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
chromodomain Y-linked 6 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 7; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
EXISTENCE:nucleotide sequencing assay evidence [ECO:0000219][PMID:12297986]
sub-region AMC0110, recombines with sub-region AMC0110' within the AZFb P1.2 recombination region
sub-region WHT4396, recombines with sub-region WHT4396' within the AZFb P1.2 recombination region
chromodomain Y-linked 7 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
recombines with the AZFb P1.2 recombination region
USP9Y pseudogene 34; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 32; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 8 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 2A; Derived by automated computational analysis using gene prediction method: BestRefSeq.
elongin C pseudogene 12; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 2 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 8; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 15; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U1 small nuclear 95, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 16; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked pseudogene 7; Derived by automated computational analysis using gene prediction method: BestRefSeq.
actin gamma 1 pseudogene 11; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 26; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 9 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC124905303; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 12% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC105377219; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, and 57% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
TATA-box binding protein associated factor 9 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
clustered mitochondria homolog pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 224 member A; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 224 member A
RNA, 5S ribosomal pseudogene 522; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377220; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377220, transcript variant X1
RNA, 5S ribosomal pseudogene 523; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tubulin beta 1 class VI pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 41 member A, Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
family with sequence similarity 41 member A, Y-linked 2
elongin C pseudogene 13; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 4 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 14; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC124905304; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC124905304, transcript variant X1
USP9Y pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
heat shock transcription factor Y-linked 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
heat shock transcription factor Y-linked 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
heat shock transcription factor, Y-linked isoform X1
elongin C pseudogene 7; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
heat shock transcription factor Y-linked 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
heat shock transcription factor Y-linked 1, transcript variant 3
heat shock transcription factor Y-linked 1, transcript variant 2
heat shock transcription factor Y-linked 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
heat shock transcription factor Y-linked 1, transcript variant 1
heat shock transcription factor, Y-linked isoform 2
propagated from UniProtKB/Swiss-Prot (Q96LI6.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
heat shock transcription factor, Y-linked isoform 1
heat shock transcription factor, Y-linked isoform X2
glycoprotein M6B pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 9B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
OFD1 pseudogene 5 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
EXISTENCE:polymerase chain reaction evidence [ECO:0000082][PMID:17877719]
recombination_hotspot; A01756/A01184 sub-region, recombines with A01756/A01184' sub-region within the AZFc P1.1b recombination region
recombination_hotspot; WHT2825 sub-region, recombines with the WHT2825' sub-region within the AZFc P1.1b recombination region, resulting in a large deletion together with a 31 nt insertion
RAB9A, member RAS oncogene family pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 7; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 6 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 9A; Derived by automated computational analysis using gene prediction method: BestRefSeq.
heat shock transcription factor Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
heat shock transcription factor Y-linked 2, transcript variant 2
heat shock transcription factor Y-linked 2, transcript variant 3
glycoprotein M6B pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
heat shock transcription factor Y-linked 2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
heat shock transcription factor, Y-linked isoform X3
heat shock transcription factor Y-linked 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
heat shock transcription factor Y-linked 2, transcript variant 1
heat shock transcription factor Y-linked 2, transcript variant X2
USP9Y pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 14; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC124905305; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC124905305, transcript variant X2
uncharacterized LOC124905305, transcript variant X1
XK related, Y-linked pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 10; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 28; Derived by automated computational analysis using gene prediction method: Curated Genomic.
U1 spliceosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00003
OFD1 pseudogene 7 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
MT-CYB pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 14; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 14, transcript variant 3
testis-specific transcript, Y-linked 14, transcript variant 2
testis-specific transcript, Y-linked 14, transcript variant 1
testis-specific transcript, Y-linked 14, transcript variant 7
testis-specific transcript, Y-linked 14, transcript variant 4
testis-specific transcript, Y-linked 14, transcript variant 8
testis-specific transcript, Y-linked 14, transcript variant 5
testis-specific transcript, Y-linked 14, transcript variant 6
zinc finger protein 839 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CD24 molecule pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U6 small nuclear 255, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC124905306; Derived by automated computational analysis using gene prediction method: Gnomon.
glyceraldehyde 3 phosphate dehydrogenase pseudogene 19; Derived by automated computational analysis using gene prediction method: Curated Genomic.
BCL6 corepressor pseudogene 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
BCL6 corepressor pseudogene 1, transcript variant 2
BCL6 corepressor pseudogene 1, transcript variant 1
BCL-6 corepressor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 57% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC105377223; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377223, transcript variant X4
uncharacterized LOC105377223, transcript variant X7
uncharacterized LOC105377223, transcript variant X3
uncharacterized LOC105377223, transcript variant X5
uncharacterized LOC105377223, transcript variant X6
uncharacterized LOC105377223, transcript variant X2
uncharacterized LOC105377223, transcript variant X1
taxilin gamma pseudogene, Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
taxilin gamma pseudogene, Y-linked, transcript variant 1
taxilin gamma pseudogene, Y-linked, transcript variant 2
lysine demethylase 5D; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
lysine demethylase 5D, transcript variant 3
lysine demethylase 5D, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 ESTs, 311 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
lysine demethylase 5D, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 40 ESTs, 428 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 50 samples with support for all annotated introns
lysine demethylase 5D, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 ESTs, 309 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
lysine demethylase 5D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 ESTs, 589 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
lysine demethylase 5D, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 36 ESTs, 496 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
lysine demethylase 5D, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 39 ESTs, 818 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
lysine demethylase 5D, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs, 511 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
lysine demethylase 5D, transcript variant 2
lysine demethylase 5D, transcript variant 1
lysine-specific demethylase 5D isoform 3
lysine-specific demethylase 5D isoform X7
lysine-specific demethylase 5D isoform X6
lysine-specific demethylase 5D isoform X3
lysine-specific demethylase 5D isoform X2
lysine-specific demethylase 5D isoform X5
lysine-specific demethylase 5D isoform X4
lysine-specific demethylase 5D isoform X1
lysine-specific demethylase 5D isoform 2
propagated from UniProtKB/Swiss-Prot (Q9BY66.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
Phosphoserine. /evidence=ECO:0000250|UniProtKB:P41229; propagated from UniProtKB/Swiss-Prot (Q9BY66.2); phosphorylation site
lysine-specific demethylase 5D isoform 1
lysine demethylase 5D, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 29 ESTs, 288 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
lysine-specific demethylase 5D isoform X8
lysine demethylase 5D, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 19 ESTs, 310 long SRA reads, 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
lysine-specific demethylase 5D isoform X9
lysine demethylase 5D, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 260 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
lysine-specific demethylase 5D isoform X10
lysine demethylase 5D, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 14 ESTs, 230 long SRA reads, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
lysine-specific demethylase 5D isoform X11
uncharacterized LOC105377224; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377224, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 7 long SRA reads, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC105377224, transcript variant X1
uncharacterized LOC105377224, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 long SRA reads, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
regulator of chromosome condensation 2 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 886, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
BRD4-independent group 4 enhancer GRCh37_chrY:22253264-22254463
BRD4-independent group 4 enhancer chrY:22253264-22254463 (GRCh37/hg19 assembly coordinates)
activates an origin of replication core promoter dependent on BRD2, P300/CBP, MED14 and CDK7 cofactors, and independent of BRD4, by STARR-seq in HCT116 cells {active_cell/tissue: HCT116}
BRD4-independent group 4 enhancer GRCh37_chrY:22277369-22278568
BRD4-independent group 4 enhancer chrY:22277369-22278568 (GRCh37/hg19 assembly coordinates)
BRD4-independent group 4 enhancer GRCh37_chrY:22280323-22281522
BRD4-independent group 4 enhancer chrY:22280323-22281522 (GRCh37/hg19 assembly coordinates)
BRD4-independent group 4 enhancer GRCh37_chrY:22299473-22300672
BRD4-independent group 4 enhancer chrY:22299473-22300672 (GRCh37/hg19 assembly coordinates)
BRD4-independent group 4 enhancer GRCh37_chrY:22316202-22317401
BRD4-independent group 4 enhancer chrY:22316202-22317401 (GRCh37/hg19 assembly coordinates)
MED14-independent group 3 enhancer GRCh37_chrY:22339850-22341049
MED14-independent group 3 enhancer chrY:22339850-22341049 (GRCh37/hg19 assembly coordinates)
zinc finger protein 884, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 885, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 10; Derived by automated computational analysis using gene prediction method: BestRefSeq.
lysine demethylase 5D pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
eukaryotic translation initiation factor 1A Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
eukaryotic translation initiation factor 1A Y-linked, transcript variant 1
eukaryotic translation initiation factor 1A Y-linked, transcript variant 2
eukaryotic translation initiation factor 1A, Y-chromosomal isoform 1
propagated from UniProtKB/Swiss-Prot (O14602.4); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
eukaryotic translation initiation factor 1A, Y-chromosomal isoform 2
family with sequence similarity 8 member A9, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
transducin beta like 1 Y-linked pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ribosomal protein S4 Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
heat shock transcription factor Y-linked 4, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
glyceraldehyde-3-phosphate dehydrogenase pseudogene 17; Derived by automated computational analysis using gene prediction method: Curated Genomic.
transmembrane protein 167A pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
TOMM22 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377225; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377225, transcript variant X1
uncharacterized LOC105377225, transcript variant X3
uncharacterized LOC105377225, transcript variant X4
uncharacterized LOC105377225, transcript variant X6
uncharacterized LOC105377225, transcript variant X7
uncharacterized LOC105377225, transcript variant X2
uncharacterized LOC105377225, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
neurofilament light pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987346; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987346, transcript variant X1
uncharacterized LOC107987346, transcript variant X2
uncharacterized LOC107987347; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA binding motif protein Y-linked family 2 member S, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PRORY Y-linked lncRNA; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 2 member E, pseudogene; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 2 member E, pseudogene
RNA binding motif protein Y-linked family 2 member T, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 14, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 1 member H, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 1 member B; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
RNA binding motif protein Y-linked family 1 member B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
RNA binding motif protein Y-linked family 1 member B, transcript variant 1
RNA binding motif protein Y-linked family 1 member B, transcript variant 2
RNA-binding motif protein, Y chromosome, family 1 member B isoform X1
RNA-binding motif protein, Y chromosome, family 1 member B isoform 1
propagated from UniProtKB/Swiss-Prot (A6NDE4.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
RNA-binding motif protein, Y chromosome, family 1 member B isoform 2
RNA binding motif protein Y-linked family 1 member B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member B isoform X2
RBM; RBM1; RBM2; RBMY; RBMY1C; YRRM1; YRRM2
RNA binding motif protein Y-linked family 1 member A1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
RNA binding motif protein Y-linked family 1 member A1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA binding motif protein Y-linked family 1 member A1, transcript variant 1
RNA binding motif protein Y-linked family 1 member A1, transcript variant 2
RNA binding motif protein Y-linked family 1 member A1, transcript variant 3
RNA-binding motif protein, Y chromosome, family 1 member A1 isoform X1
RNA-binding motif protein, Y chromosome, family 1 member A1 isoform 1
propagated from UniProtKB/Swiss-Prot (P0DJD3.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
RNA-binding motif protein, Y chromosome, family 1 member A1 isoform 2
RNA-binding motif protein, Y chromosome, family 1 member A1 isoform 3
testis-specific transcript, Y-linked 13; Derived by automated computational analysis using gene prediction method: BestRefSeq.
elongin C pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 10 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 8; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain protein Y-linked 11 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sub-region WHT5557', recombines with sub-region WHT5557 within the IR4 Yp recombination region
uncharacterized LOC105377236; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377236, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC105377236, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC105377236, transcript variant X1
OFD1 pseudogene 16 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377237; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377237, transcript variant X1
hRBMY; RBM1; RBM2; RBMY1A1; YRRM1; YRRM2
RNA binding motif protein Y-linked family 1 member D; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
RNA binding motif protein Y-linked family 1 member D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member D isoform X2
RNA binding motif protein Y-linked family 1 member D, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member D isoform X3
RNA binding motif protein Y-linked family 1 member D, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
RNA binding motif protein Y-linked family 1 member D, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA binding motif protein Y-linked family 1 member D, transcript variant 2
RNA binding motif protein Y-linked family 1 member D, transcript variant 1
RNA binding motif protein Y-linked family 1 member D, transcript variant 3
RNA binding motif protein Y-linked family 1 member D, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member D isoform X4
RNA-binding motif protein, Y chromosome, family 1 member D isoform 2
RNA-binding motif protein, Y chromosome, family 1 member D isoform 1
propagated from UniProtKB/Swiss-Prot (P0C7P1.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
RNA-binding motif protein, Y chromosome, family 1 member D isoform X1
RNA-binding motif protein, Y chromosome, family 1 member D isoform 3
RNA-binding motif protein, Y chromosome, family 1 member D isoform X5
RNA binding motif protein Y-linked family 1 member E; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
RNA binding motif protein Y-linked family 1 member E, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member E isoform X2
RNA binding motif protein Y-linked family 1 member E, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA binding motif protein Y-linked family 1 member E, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA binding motif protein Y-linked family 1 member E
RNA binding motif protein Y-linked family 1 member E, transcript variant X4
RNA-binding motif protein, Y chromosome, family 1 member E isoform X3
RNA-binding motif protein, Y chromosome, family 1 member E isoform X1
RNA-binding motif protein, Y chromosome, family 1 member E
propagated from UniProtKB/Swiss-Prot (A6NEQ0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
RNA-binding motif protein, Y chromosome, family 1 member E isoform X4
RNA binding motif protein Y-linked family 2 member A, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 8 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987356; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987356, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heat shock transcription factor Y-linked 5, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 17; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 12 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 15; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
uncharacterized LOC102725532; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific transcript, Y-linked 6B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 1 member F; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 1 member F, transcript variant 6
RNA binding motif protein Y-linked family 1 member F, transcript variant 5
RNA binding motif protein Y-linked family 1 member F, transcript variant 4
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform 6
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform 5
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform 4
propagated from UniProtKB/Swiss-Prot (Q15415.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
RNA binding motif protein Y-linked family 1 member F, transcript variant 3
RNA binding motif protein Y-linked family 1 member F, transcript variant 2
RNA binding motif protein Y-linked family 1 member F, transcript variant 1
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform 3
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform 1
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform 2
testis specific protein Y-linked 23, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member U, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 1 member K, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 5; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis specific protein Y-linked 22, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member F, pseudogene; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 2 member F, pseudogene
RNA binding motif protein Y-linked family 1 member A1 pseudogene; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA binding motif protein Y-linked family 1 member A1 pseudogene
testis-specific transcript, Y-linked 25, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member V, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis specific protein Y-linked 21, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 1 member J; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
RNA binding motif protein Y-linked family 1 member J, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
RNA binding motif protein Y-linked family 1 member J
RNA binding motif protein Y-linked family 1 member J, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 1 long SRA read, 6 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform X3
RNA-binding motif protein, Y chromosome, family 1 member F/J
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform X1
RNA binding motif protein Y-linked family 1 member J, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
RNA-binding motif protein, Y chromosome, family 1 member F/J isoform X2
uncharacterized LOC101929148; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 6; Derived by automated computational analysis using gene prediction method: BestRefSeq.
PTPN13 like Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
elongin C pseudogene 8; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 13 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 24; Derived by automated computational analysis using gene prediction method: Curated Genomic.
heat shock transcription factor Y-linked 7, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987357; Derived by automated computational analysis using gene prediction method: Gnomon.
OFD1 pseudogene 9 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member B, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
family with sequence similarity 8 member A10, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member W, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987348; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987348, transcript variant X2
uncharacterized LOC107987348, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis-specific transcript, Y-linked 17A; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 17A
tripartite motif containing 60 pseudogene 4, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 11, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
basic charge Y-linked 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
tripartite motif containing 60 pseudogene 8, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 3, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tripartite motif containing 60 pseudogene 9, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377238; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377238, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC105377238, transcript variant X1
deleted in azoospermia 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
deleted in azoospermia 1, transcript variant 2
deleted in azoospermia 1, transcript variant 1
deleted in azoospermia protein 1 isoform 2
deleted in azoospermia protein 1 isoform 1
deleted in azoospermia 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
deleted in azoospermia 2, transcript variant 1
deleted in azoospermia 2, transcript variant 2
deleted in azoospermia 2, transcript variant 3
deleted in azoospermia 2, transcript variant 7
deleted in azoospermia 2, transcript variant 5
deleted in azoospermia 2, transcript variant 4
deleted in azoospermia 2, transcript variant 6
deleted in azoospermia protein 2 isoform 7
deleted in azoospermia protein 2 isoform 5
deleted in azoospermia protein 2 isoform 4
deleted in azoospermia protein 2 isoform 1
propagated from UniProtKB/Swiss-Prot (Q13117.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
deleted in azoospermia protein 2 isoform 2
deleted in azoospermia protein 2 isoform 3
deleted in azoospermia protein 2 isoform 6
uncharacterized LOC105377239; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377239, transcript variant X1
uncharacterized LOC105377239, transcript variant X2
protein phosphatase 1 regulatory subunit 12B pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
small nucleolar RNA SNORA70; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00156
arginine-glutamic acid dipeptide repeats pseudogene 1 Y-linked; Derived by automated computational analysis using gene prediction method: Gnomon.
arginine-glutamic acid dipeptide repeats pseudogene 1 Y-linked
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, and 80% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
RNA binding motif protein Y-linked family 2 member C, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 10 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987349; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 66% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heat shock transcription factor Y-linked 6, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 18; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain protein Y-linked 14 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 16; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 25; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 29; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U1 small nuclear 97, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RAB9A, member RAS oncogene family pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 9; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 11 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 9; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 15 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 16 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 13; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 11; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 3B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA, U1 small nuclear 86, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 12; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RAB9A, member RAS oncogene family pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 10; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 12 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 10; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 1B; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
chromodomain Y-linked 1B, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 2 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
chromodomain Y-linked 1B, transcript variant 2
chromodomain Y-linked 1B, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 2 long SRA reads, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
isoform b is encoded by transcript variant 2; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific chromodomain protein Y 1 isoform b
propagated from UniProtKB/Swiss-Prot (Q9Y6F8.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
testis-specific chromodomain protein Y 1 isoform X1
chromodomain Y-linked 1B, transcript variant 1
isoform a is encoded by transcript variant 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific chromodomain protein Y 1 isoform a
chromodomain Y-linked 17 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 35; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 31; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sub-region AMC0110', recombines with sub-region AMC0110 within the AZFb P5.1 recombination region
sub-region WHT4396', recombines with sub-region WHT4396 within the AZFb P5.1 recombination region
chromodomain Y-linked 18 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
golgin A6 family like 11, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
dynamin 1 pseudogene 24; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CSPG4 pseudogene 2 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CSPG4 pseudogene 3 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CHRFAM7A pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
GOLGA2 pseudogene 2 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA, 7SL, cytoplasmic 818, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
UBE2Q2 pseudogene 4, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
dynamin 1 pseudogene 25; Derived by automated computational analysis using gene prediction method: Curated Genomic.
golgin A6 family like 12, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
long intergenic non-protein coding RNA 265-2, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
capicua transcriptional repressor pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
long intergenic non-protein coding RNA 266-2, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
septin 14 pseudogene 22; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ribosomal protein L41 pseudogene 7; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member X, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987350; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC107987350, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC107987350, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
testis-specific transcript, Y-linked 17B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 17B
tripartite motif containing 60 pseudogene 5, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 12, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 4B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
basic charge Y-linked 2B; Derived by automated computational analysis using gene prediction method: BestRefSeq.
tripartite motif containing 60 pseudogene 10, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 2, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tripartite motif containing 60 pseudogene 11, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377241; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377241, transcript variant X2
uncharacterized LOC105377241, transcript variant X1
deleted in azoospermia 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
deleted in azoospermia 4; Derived by automated computational analysis using gene prediction method: BestRefSeq.
deleted in azoospermia 4, transcript variant 1
deleted in azoospermia 4, transcript variant 2
deleted in azoospermia 4, transcript variant 3
deleted in azoospermia protein 4 isoform 3
propagated from UniProtKB/Swiss-Prot (Q86SG3.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
deleted in azoospermia protein 4 isoform 1
deleted in azoospermia protein 4 isoform 2
uncharacterized LOC105377242; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC105377242, transcript variant X1
uncharacterized LOC105377242, transcript variant X2
tripartite motif containing 60 pseudogene 6, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 1, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tripartite motif containing 60 pseudogene 7, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
zinc finger protein 736 pseudogene 5, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
basic charge Y-linked 2C; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 4C; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger protein 736 pseudogene 4, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
tripartite motif containing 60 pseudogene 12, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 17C; Derived by automated computational analysis using gene prediction method: BestRefSeq.
testis-specific transcript, Y-linked 17C
RNA binding motif protein Y-linked family 2 member Y, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
ribosomal protein L41 pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
septin 14 pseudogene 23; Derived by automated computational analysis using gene prediction method: BestRefSeq.
capicua transcriptional repressor pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
long intergenic non-protein coding RNA 265-3, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
golgin A6 family like 13, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
dynamin 1 pseudogene 27; Derived by automated computational analysis using gene prediction method: Curated Genomic.
UBE2Q2 pseudogene 5, Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
GOLGA2 pseudogene 3 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
RNA, 7SL, cytoplasmic 725, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CHRFAM7A pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CSPG4 pseudogene 4 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CSPG4 pseudogene 1 Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
dynamin 1 pseudogene 48; Derived by automated computational analysis using gene prediction method: Curated Genomic.
dynamin 1 pseudogene 26; Derived by automated computational analysis using gene prediction method: Curated Genomic.
golgin A6 family like 14, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
golgin A6 family like 16, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
recombination_hotspot; A01756/A01184' sub-region, recombines with A01756/A01184 sub-region within the AZFb P4.1 recombination region
recombination_hotspot; WHT2825' sub-region, recombines with the WHT2825 sub-region within the AZFb P4.1 recombination region, resulting in a large deletion together with a 31 nt insertion
chromodomain Y-linked 19 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
recombines with the AZFb P5.2 recombination region
USP9Y pseudogene 36; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 33; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 20 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
chromodomain Y-linked 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 1 long SRA read, and 83% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
chromodomain Y-linked 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 1 long SRA read, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
chromodomain Y-linked 1, transcript variant 2
chromodomain Y-linked 1, transcript variant 1
elongin C pseudogene 34; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 13 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RAB9A, member RAS oncogene family pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 30; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U1 small nuclear 107, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
testis-specific transcript, Y-linked 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
USP9Y pseudogene 9; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 19; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked pseudogene 5; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 21 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 22 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 17; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 14 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OFD1 pseudogene 18 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
trafficking protein particle complex 2 pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RAB9A, member RAS oncogene family pseudogene 3; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 20; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U1 small nuclear 40, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 21; Derived by automated computational analysis using gene prediction method: Curated Genomic.
XK related, Y-linked pseudogene 6; Derived by automated computational analysis using gene prediction method: Curated Genomic.
PTPN13 like Y-linked pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
elongin C pseudogene 11; Derived by automated computational analysis using gene prediction method: Curated Genomic.
chromodomain Y-linked 23 pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
USP9Y pseudogene 26; Derived by automated computational analysis using gene prediction method: Curated Genomic.
heat shock transcription factor Y-linked 8, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC107987352; Derived by automated computational analysis using gene prediction method: Gnomon.
OFD1 pseudogene 15 Y-linked; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA binding motif protein Y-linked family 2 member D, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
arginine-glutamic acid dipeptide repeats pseudogene 2 Y-linked; Derived by automated computational analysis using gene prediction method: Gnomon.
arginine-glutamic acid dipeptide repeats pseudogene 2 Y-linked
protein phosphatase 1 regulatory subunit 12B pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
RNA, U6 small nuclear 1314, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CYCS pseudogene 48; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC105377244; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 long SRA reads, and 77% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ankyrin repeat domain 36 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
uncharacterized LOC124905308; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
CYCS pseudogene 49; Derived by automated computational analysis using gene prediction method: Curated Genomic.
TPTE2 pseudogene 4; Derived by automated computational analysis using gene prediction method: Curated Genomic.
solute carrier family 25 member 15 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
poly(ADP-ribose) polymerase family member 4 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
CCNQ pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
OCT4-NANOG hESC enhancer GRCh37_chrY:28797811-28798580
OCT4-NANOG hESC enhancer chrY:28797811-28798580 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:28798753-28799442
OCT4-NANOG hESC enhancer chrY:28798753-28799442 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58862425-58862968
OCT4-NANOG hESC enhancer chrY:58862425-58862968 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58861881-58862424
OCT4-NANOG hESC enhancer chrY:58861881-58862424 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58971453-58972198
OCT4-NANOG hESC enhancer chrY:58971453-58972198 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chrY:58975179-58975922
OCT4-NANOG-H3K4me1 hESC enhancer chrY:58975179-58975922 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58975923-58976666
OCT4-NANOG hESC enhancer chrY:58975923-58976666 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58976667-58977410
OCT4-NANOG hESC enhancer chrY:58976667-58977410 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58977411-58978156
OCT4-NANOG-H3K27ac hESC enhancer chrY:58977411-58978156 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58978157-58978900
OCT4-NANOG-H3K27ac hESC enhancer chrY:58978157-58978900 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58978901-58979644
OCT4-NANOG-H3K27ac hESC enhancer chrY:58978901-58979644 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrY:58979645-58980388
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer chrY:58979645-58980388 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrY:58981135-58981878
OCT4-NANOG-H3K27ac hESC enhancer chrY:58981135-58981878 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58981879-58982622
OCT4-NANOG hESC enhancer chrY:58981879-58982622 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58982623-58983366
OCT4-NANOG hESC enhancer chrY:58982623-58983366 (GRCh37/hg19 assembly coordinates)
OCT4-NANOG hESC enhancer GRCh37_chrY:58985458-58986055
OCT4-NANOG hESC enhancer chrY:58985458-58986055 (GRCh37/hg19 assembly coordinates)
OCT4 hESC enhancer GRCh37_chrY:58987057-58987801
OCT4 hESC enhancer chrY:58987057-58987801 (GRCh37/hg19 assembly coordinates)
OCT4 hESC enhancer GRCh37_chrY:58988210-58988711
OCT4 hESC enhancer chrY:58988210-58988711 (GRCh37/hg19 assembly coordinates)
OCT4 hESC enhancer GRCh37_chrY:58991323-58991865
OCT4 hESC enhancer chrY:58991323-58991865 (GRCh37/hg19 assembly coordinates)
OCT4 hESC enhancer GRCh37_chrY:58993067-58993568
OCT4 hESC enhancer chrY:58993067-58993568 (GRCh37/hg19 assembly coordinates)
H3K27ac hESC enhancer GRCh37_chrY:58996593-58997092
H3K27ac hESC enhancer chrY:58996593-58997092 (GRCh37/hg19 assembly coordinates)
CTBP2 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
sprouty RTK signaling antagonist 3; Derived by automated computational analysis using gene prediction method: BestRefSeq.
sprouty RTK signaling antagonist 3, transcript variant 4
similar to RNA sequence, mRNA (same species):RefSeq:NM_001394354.1
The RefSeq transcript has 1 substitution and aligns at 99% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
meiotic double-strand break mapped by DNA meiotic recombinase 1 chromatin immunoprecipitation followed by single-stranded DNA enrichment and sequencing in the germ cells of a male individual with the PRDM9 A/C genotype
EXISTENCE:DNA detection assay evidence [ECO:0005519][PMID:21750151]
crossovers mapped in sperm cells of males of African ancestry with hotspot activity specific to PRDM9 C-type alleles
COORDINATES:motif similarity evidence [ECO:0000028][PMID:21750151]
nucleotide motif; similarity, but not exact identity (6/7 nucleotides), to the predicted 16-mer PRDM9 C-type binding motif, CCNCNNTNNNCNTNNC, found close to the center of the hotspot
nucleotide motif; similarity to the predicted 16-mer PRDM9 C-type binding motif, CCNCNNTNNNCNTNNC
EXISTENCE:DNA detection assay evidence [ECO:0005519][PMID:20818382]
crossovers mapped in sperm cells of males of European and African ancestries; recombination frequencies vary with PRDM9 genotypes, with higher recombination frequencies in individuals with the PRDM9 A allele, and little recombination in some individuals with other PRDM9 alleles
sprouty RTK signaling antagonist 3, transcript variant 3
similar to RNA sequence, mRNA (same species):RefSeq:NM_001394353.1
The RefSeq transcript has 6 substitutions, 1 non-frameshifting indel and aligns at 97% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
COORDINATES:motif similarity evidence [ECO:0000028][PMID:20818382, PMID:19165926]
nucleotide motif; similarity to the predicted 13-mer PRDM9 A binding motif (LD hotspot motif), CCNCCNTNNCCNC, found near the center of the hotspot
sprouty RTK signaling antagonist 3, transcript variant 1
sprouty RTK signaling antagonist 3, transcript variant 5
similar to RNA sequence, mRNA (same species):RefSeq:NM_001394355.1
The RefSeq transcript aligns at 99% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
adenosylmethionine decarboxylase 1 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
diphthamide biosynthesis 3 pseudogene 2; Derived by automated computational analysis using gene prediction method: Curated Genomic.
vesicle associated membrane protein 7; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
vesicle associated membrane protein 7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, 915 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 102 samples with support for all annotated introns
vesicle associated membrane protein 7, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 714 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
vesicle associated membrane protein 7, transcript variant 1
vesicle associated membrane protein 7, transcript variant 3
vesicle associated membrane protein 7, transcript variant 4
vesicle associated membrane protein 7, transcript variant 5
vesicle associated membrane protein 7, transcript variant 2
vesicle-associated membrane protein 7 isoform 3
N-acetylalanine, partial. /evidence=ECO:0000269|Ref.8; propagated from UniProtKB/Swiss-Prot (P51809.3); acetylation site
vesicle-associated membrane protein 7 isoform 1
Phosphoserine. /evidence=ECO:0007744|PubMed:23186163; propagated from UniProtKB/Swiss-Prot (P51809.3); phosphorylation site
Phosphoserine. /evidence=ECO:0000250|UniProtKB:P70280; propagated from UniProtKB/Swiss-Prot (P51809.3); phosphorylation site
propagated from UniProtKB/Swiss-Prot (P51809.3); transmembrane region
vesicle-associated membrane protein 7 isoform 2
vesicle-associated membrane protein 7 isoform X1
vesicle-associated membrane protein 7 isoform X2
H3K27ac hESC enhancer chrX:155137478-155138029 (GRCh37/hg19 assembly coordinates)
NANOG hESC enhancer GRCh37_chrY:59291828-59292346
NANOG hESC enhancer chrY:59291828-59292346 (GRCh37/hg19 assembly coordinates)
uncharacterized LOC124905309; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00012
elongin C pseudogene 24; Derived by automated computational analysis using gene prediction method: Curated Genomic.
TRPC6 pseudogene 1; Derived by automated computational analysis using gene prediction method: Curated Genomic.
interleukin 9 receptor; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon.
interleukin 9 receptor, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
interleukin 9 receptor, transcript variant X7
interleukin 9 receptor, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 3 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
interleukin 9 receptor, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
interleukin 9 receptor, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 2 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
interleukin 9 receptor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 12 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
interleukin 9 receptor, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 15 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
interleukin 9 receptor, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 14 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
interleukin 9 receptor, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 15 long SRA reads, 2 Proteins, and 90% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
interleukin 9 receptor, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 12 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
interleukin 9 receptor, transcript variant 2
interleukin 9 receptor, transcript variant 1
interleukin-9 receptor isoform 1 precursor
/evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q01113.3)
Interleukin-9 receptor. /id=PRO_0000010911
propagated from UniProtKB/Swiss-Prot (Q01113.3)
N-linked (GlcNAc...) asparagine. /evidence=ECO:0000255; propagated from UniProtKB/Swiss-Prot (Q01113.3); glycosylation site
propagated from UniProtKB/Swiss-Prot (Q01113.3); Region: WSXWS motif
propagated from UniProtKB/Swiss-Prot (Q01113.3); transmembrane region
propagated from UniProtKB/Swiss-Prot (Q01113.3); Region: Box 1 motif
propagated from UniProtKB/Swiss-Prot (Q01113.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite
interleukin 9 receptor, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
WASH and IL9R antisense RNA 1; Derived by automated computational analysis using gene prediction method: BestRefSeq.
WASP family homolog 6, pseudogene; Derived by automated computational analysis using gene prediction method: Curated Genomic.
DEAD/H-box helicase 11 like 16 (pseudogene); Derived by automated computational analysis using gene prediction method: BestRefSeq.
DEAD/H-box helicase 11 like 16 (pseudogene)