Burkholderia stabilis isolate E plasmid IV, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.
Submitted (27-NOV-2017) Functional Genomics Genter Zurich, University Hospital Basel, 4056 Basel, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nLR025745.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/25/2022 04:48:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,864\nCDSs (total) :: 7,772\nGenes (coding) :: 7,694\nCDSs (with protein) :: 7,694\nGenes (RNA) :: 92\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 27 of 78\nPseudo Genes (incomplete) :: 65 of 78\nPseudo Genes (internal stop) :: 7 of 78\nPseudo Genes (multiple problems) :: 17 of 78\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017333734.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: similar to AA sequence:RefSeq:WP_017333738.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_006749840.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333740.1
COORDINATES: similar to AA sequence:RefSeq:WP_007966859.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024755.2
COORDINATES: similar to AA sequence:RefSeq:WP_006749846.1
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: similar to AA sequence:RefSeq:WP_017333749.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_006749851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012493832.1
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009771283.1
COORDINATES: protein motif:HMM:NF023926.2
COORDINATES: similar to AA sequence:RefSeq:WP_006749863.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012735307.1
COORDINATES: similar to AA sequence:RefSeq:WP_006029239.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735312.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_006405228.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402543.1
COORDINATES: similar to AA sequence:RefSeq:WP_006405263.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749788.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010112080.1
COORDINATES: similar to AA sequence:RefSeq:WP_009917391.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218113.1
COORDINATES: similar to AA sequence:RefSeq:WP_012218114.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734092.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012734091.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011695142.1
COORDINATES: similar to AA sequence:RefSeq:WP_011052998.1
COORDINATES: similar to AA sequence:RefSeq:WP_017167886.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: similar to AA sequence:RefSeq:WP_015004614.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012328289.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF022136.2
toxin co-regulated pilus biosynthesis Q family protein
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:TIGR03021.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF018562.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF020384.2
COORDINATES: protein motif:HMM:NF016785.2
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_003274623.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301218.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487995.1
COORDINATES: similar to AA sequence:RefSeq:WP_009771273.1
COORDINATES: similar to AA sequence:RefSeq:WP_018441965.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017333730.1
COORDINATES: similar to AA sequence:RefSeq:WP_006749834.1