Clostridium gasigenes strain CGAS001 plasmid pCGAS001_A, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete assembled genome of Clostridium gasigenes CGAS001
Submitted (02-MAR-2021) Institute for Food Safety and Hygiene, University of Zurich, Winterthurerstrasse 272, Zurich, Zurich 8057, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCP071377.1.\nBacteria and source DNA available from Institute Food Hygiene and\nSafety, University Zurich.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2020\nAssembly Method :: unicycler v. 0.4.9b\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 250.0x\nSequencing Technology :: Illumina MiniSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 04:43:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,891\nCDSs (total) :: 3,773\nGenes (coding) :: 3,727\nCDSs (with protein) :: 3,727\nGenes (RNA) :: 118\nrRNAs :: 12, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 12, 12 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 3\nPseudo Genes (total) :: 46\nCDSs (without protein) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 8 of 46\nPseudo Genes (incomplete) :: 33 of 46\nPseudo Genes (internal stop) :: 12 of 46\nPseudo Genes (multiple problems) :: 6 of 46\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011988962.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: similar to AA sequence:RefSeq:WP_003458984.1