Callithrix jacchus isolate mCalJac1 chromosome Y, mCalJa1.2.pat.X, whole genome shotgun sequence.
Callithrix jacchus (white-tufted-ear marmoset)
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix.
REFSEQ INFORMATION: The reference sequence is identical to\nCM021938.2.\nAssembly name: mCalJa1.2.pat.X\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/04/28. The original whole-genome shotgun project has the\naccession JAALXP000000000.2.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 25-APR-2021\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve solve\n v. 3.2.1_04122018; Salsa2 HiC v. 2.2;\n Arrow polishing and gap filling v.\n smrtlink_6.0.0.47841; Longranger Align v.\n 2.2.2; Freebayes v. 1.3.1; gEVAL manual\n curation v. 2019-12-11; Zhang manual\n curation v. 2021-04-25; VGP assembly\n pipeline v. 1.6\nAssembly Name :: mCalJa1.2.pat.X\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 63.44x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_011100555.1-RS_2023_03\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Best-placed RefSeq; Gnomon;\n cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 03/02/2023\n##Genome-Annotation-Data-END##
phosphatidylinositol specific phospholipase C X domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X7
COORDINATES: polyA evidence [ECO:0006239]
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X1
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X6
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X3
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 ESTs, 1 long SRA read, 2 Proteins
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X5
phosphatidylinositol specific phospholipase C X domain containing 1, transcript variant X4
U7 small nuclear RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00066
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: Gnomon.
PI-PLC X domain-containing protein 1 isoform X1
PI-PLC X domain-containing protein 1 isoform X2
putative GTP-binding protein 6; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta, transcript variant X1
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta, transcript variant X2
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta, transcript variant X3
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta, transcript variant X5
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta, transcript variant X6
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X2
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X3
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X5
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta, transcript variant X4
serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X4
uncharacterized LOC128930725; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128930725, transcript variant X1
uncharacterized LOC128930725, transcript variant X2
uncharacterized LOC128930725, transcript variant X3
uncharacterized LOC128930736; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC128930737; Derived by automated computational analysis using gene prediction method: Gnomon.
short stature homeobox protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
uncharacterized LOC128930734; Derived by automated computational analysis using gene prediction method: Gnomon.
acetylserotonin O-methyltransferase like; Derived by automated computational analysis using gene prediction method: Gnomon.
acetylserotonin O-methyltransferase like, transcript variant X1
acetylserotonin O-methyltransferase like, transcript variant X2
acetylserotonin O-methyltransferase like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 313 ESTs, 1 long SRA read
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X2
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X3
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein; Derived by automated computational analysis using gene prediction method: Gnomon.
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, transcript variant X2
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, transcript variant X1
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein
uncharacterized LOC128930730; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128930730, transcript variant X11
uncharacterized LOC128930730, transcript variant X19
uncharacterized LOC128930730, transcript variant X18
uncharacterized LOC128930730, transcript variant X10
uncharacterized LOC128930730, transcript variant X16
uncharacterized LOC128930730, transcript variant X14
uncharacterized LOC128930730, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST
uncharacterized LOC128930730, transcript variant X17
uncharacterized LOC128930730, transcript variant X15
uncharacterized LOC128930730, transcript variant X12
uncharacterized LOC128930730, transcript variant X9
uncharacterized LOC128930730, transcript variant X6
uncharacterized LOC128930730, transcript variant X5
uncharacterized LOC128930730, transcript variant X13
uncharacterized LOC128930730, transcript variant X7
uncharacterized LOC128930730, transcript variant X2
uncharacterized LOC128930730, transcript variant X8
uncharacterized LOC128930730, transcript variant X4
uncharacterized LOC128930730, transcript variant X3
uncharacterized protein LOC128930730 isoform X2
basic proline-rich protein-like isoform X1
ADP/ATP translocase 3; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin 3 receptor subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin 3 receptor subunit alpha, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, 4 Proteins
interleukin 3 receptor subunit alpha, transcript variant X2
interleukin-3 receptor subunit alpha isoform X1
interleukin-3 receptor subunit alpha isoform X2
uncharacterized LOC128930733; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128930733, transcript variant X2
uncharacterized LOC128930733, transcript variant X1
uncharacterized LOC128930728; Derived by automated computational analysis using gene prediction method: Gnomon.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X3
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X5
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X2
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X4
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X6
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X1
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X7
granulocyte-macrophage colony-stimulating factor receptor subunit alpha, transcript variant X8
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X1
granulocyte-macrophage colony-stimulating factor receptor subunit alpha isoform X2
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, transcript variant X3
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, transcript variant X5
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X4
probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein, transcript variant X4
probable ubiquitin carboxyl-terminal hydrolase FAF-Y; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein
histone demethylase UTY; Derived by automated computational analysis using gene prediction method: Gnomon.
histone demethylase UTY, transcript variant X4
histone demethylase UTY, transcript variant X1
histone demethylase UTY, transcript variant X3
histone demethylase UTY, transcript variant X2
histone demethylase UTY, transcript variant X6
histone demethylase UTY, transcript variant X5
ubiquitin-40S ribosomal protein S27a; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118150939; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC118150939, transcript variant X1
uncharacterized LOC118150939, transcript variant X2
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked; Derived by automated computational analysis using gene prediction method: BestRefSeq.
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
similar to RNA sequence, mRNA (same species):RefSeq:NM_001267761.1
annotated by transcript or proteomic data
The RefSeq transcript has 6 substitutions and aligns at 95% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
similar to AA sequence (same species):RefSeq:NP_001254690.1
The RefSeq protein has 3 substitutions and aligns at 97% coverage compared to this genomic sequence; Derived by automated computational analysis using gene prediction method: BestRefSeq.
zinc finger protein Y-linked; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein Y-linked, transcript variant X18
zinc finger Y-chromosomal protein isoform X6
zinc finger protein Y-linked, transcript variant X12
zinc finger protein Y-linked, transcript variant X1
zinc finger protein Y-linked, transcript variant X14
zinc finger protein Y-linked, transcript variant X5
zinc finger protein Y-linked, transcript variant X6
zinc finger protein Y-linked, transcript variant X11
zinc finger protein Y-linked, transcript variant X4
zinc finger protein Y-linked, transcript variant X16
zinc finger protein Y-linked, transcript variant X13
zinc finger protein Y-linked, transcript variant X15
zinc finger protein Y-linked, transcript variant X2
zinc finger protein Y-linked, transcript variant X3
zinc finger protein Y-linked, transcript variant X10
zinc finger protein Y-linked, transcript variant X8
zinc finger protein Y-linked, transcript variant X9
zinc finger protein Y-linked, transcript variant X7
zinc finger protein Y-linked, transcript variant X17
zinc finger Y-chromosomal protein isoform X4
zinc finger Y-chromosomal protein isoform X2
zinc finger Y-chromosomal protein isoform X3
zinc finger Y-chromosomal protein isoform X1
zinc finger Y-chromosomal protein isoform X5
40S ribosomal protein S4, Y; Derived by automated computational analysis using gene prediction method: Gnomon.
sex determining region Y; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 21 Proteins
uncharacterized LOC128930727; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase DDX3Y-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP-dependent RNA helicase DDX3Y; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX3Y
probable ubiquitin carboxyl-terminal hydrolase FAF-Y
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein
uncharacterized LOC118150910; Derived by automated computational analysis using gene prediction method: Gnomon.
P2Y receptor family member 8; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 2 Proteins
A-kinase anchoring protein 17A; Derived by automated computational analysis using gene prediction method: Gnomon.
acetylserotonin O-methyltransferase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
acetylserotonin O-methyltransferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: acetylserotonin O-methyltransferase-like
dehydrogenase/reductase SDR family member on chromosome X-like; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule-associated protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
translation initiation factor IF-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoproteins C1/C2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 31 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 23 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Xg glycoprotein (Xg blood group); Derived by automated computational analysis using gene prediction method: Gnomon.
Xg glycoprotein (Xg blood group), transcript variant X5
Xg glycoprotein (Xg blood group), transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 EST, 1 long SRA read
Xg glycoprotein (Xg blood group), transcript variant X14
Xg glycoprotein (Xg blood group), transcript variant X12
Xg glycoprotein (Xg blood group), transcript variant X9
Xg glycoprotein (Xg blood group), transcript variant X11
Xg glycoprotein (Xg blood group), transcript variant X4
Xg glycoprotein (Xg blood group), transcript variant X6
Xg glycoprotein (Xg blood group), transcript variant X8
Xg glycoprotein (Xg blood group), transcript variant X1
Xg glycoprotein (Xg blood group), transcript variant X10
Xg glycoprotein (Xg blood group), transcript variant X21
Xg glycoprotein (Xg blood group), transcript variant X23
Xg glycoprotein (Xg blood group), transcript variant X24
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 1 EST
Xg glycoprotein (Xg blood group), transcript variant X25
Xg glycoprotein (Xg blood group), transcript variant X3
Xg glycoprotein (Xg blood group), transcript variant X7
Xg glycoprotein (Xg blood group), transcript variant X16
Xg glycoprotein (Xg blood group), transcript variant X17
Xg glycoprotein (Xg blood group), transcript variant X15
Xg glycoprotein (Xg blood group), transcript variant X18
Xg glycoprotein (Xg blood group), transcript variant X20
Xg glycoprotein (Xg blood group), transcript variant X26
Xg glycoprotein (Xg blood group), transcript variant X2
Xg glycoprotein (Xg blood group), transcript variant X22
Xg glycoprotein (Xg blood group), transcript variant X19
small nucleolar RNA U13; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01210
uncharacterized LOC118150894; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 56 Proteins
uncharacterized LOC128928114; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128930726; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs
lysine demethylase 5D; Derived by automated computational analysis using gene prediction method: Gnomon.
lysine demethylase 5D, transcript variant X1
lysine demethylase 5D, transcript variant X6
lysine demethylase 5D, transcript variant X7
lysine demethylase 5D, transcript variant X5
lysine demethylase 5D, transcript variant X2
lysine demethylase 5D, transcript variant X3
lysine demethylase 5D, transcript variant X4
lysine-specific demethylase 5D isoform X1
lysine-specific demethylase 5D isoform X6
lysine-specific demethylase 5D isoform X7
lysine-specific demethylase 5D isoform X5
lysine-specific demethylase 5D isoform X2
lysine-specific demethylase 5D isoform X3
lysine-specific demethylase 5D isoform X4
lysine demethylase 5D, transcript variant X8
lysine-specific demethylase 5D isoform X8
neuroligin 4 X-linked; Derived by automated computational analysis using gene prediction method: Gnomon.
neuroligin 4 X-linked, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 6 Proteins
neuroligin 4 X-linked, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, 25 Proteins
neuroligin 4 X-linked, transcript variant X2
neuroligin 4 X-linked, transcript variant X1
arylsulfatase H; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128930741; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, Y chromosome, family 1 member B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
RNA-binding motif protein, Y chromosome, family 1 member B-like
uncharacterized LOC118150926; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC128930743; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A, Y-chromosomal-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 30 Proteins
testis-specific chromodomain protein Y 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific chromodomain protein Y 1; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific chromodomain protein Y 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 Protein
THO complex subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 1 long SRA read, 3 Proteins
LOW QUALITY PROTEIN: THO complex subunit 2
procathepsin L-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 2 Proteins
testis-specific chromodomain protein Y 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 1A, Y-chromosomal-like