Lemur catta isolate mLemCat1 chromosome Y, mLemCat1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036500.1.\nAssembly name: mLemCat1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGPY000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2021\nAssembly Method :: hifiasm v. 0.12-r304; purge_dups v.\n 1.2.5; bionano_solve v.\n Solve3.6.1_11162020; salsa2 v. v2.2;\n gEVAL manual curation v. 2021-07-16\nAssembly Name :: mLemCat1.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 20.81x\nSequencing Technology :: Pacbio Sequel II CCS; 10X Genomics linked\n reads; Bionano Genomics DLS; Arima\n Genomics v1 Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Lemur catta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF01210
COORDINATES: nucleotide motif:Rfam:12.0:RF00002
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 3% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
zinc finger protein 736-like, transcript variant X2
zinc finger protein 736-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
testis-specific Y-encoded protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 5% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 4% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: testicular acid phosphatase-like
testis-specific Y-encoded protein 1-like
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 5D, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 5D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 5D, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 5D, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 5D, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 5D isoform X4
lysine-specific demethylase 5D isoform X3
lysine-specific demethylase 5D isoform X2
lysine-specific demethylase 5D isoform X1
lysine-specific demethylase 5D isoform X5
ubiquitin carboxyl-terminal hydrolase 11-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
ubiquitin-like modifier-activating enzyme 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins, and 1% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 11% coverage of the annotated genomic feature by RNAseq alignments
F-box-like/WD repeat-containing protein TBL1X, transcript variant X2
F-box-like/WD repeat-containing protein TBL1X, transcript variant X1
F-box-like/WD repeat-containing protein TBL1X, transcript variant X3
F-box-like/WD repeat-containing protein TBL1X
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 ESTs, 24 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 ESTs, 28 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
haloacid dehalogenase-like hydrolase domain-containing protein 2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: haloacid dehalogenase-like hydrolase domain-containing protein 2
40S ribosomal protein S4, Y-like, transcript variant X1
40S ribosomal protein S4, Y-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 228 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
40S ribosomal protein S4-like isoform X2
40S ribosomal protein S4, Y-like isoform X1
40S ribosomal protein S4, Y-like, transcript variant X3
40S ribosomal protein S4, Y-like, transcript variant X4
40S ribosomal protein S4, Y-like isoform X3
ubiquitin-protein ligase E3C-like, transcript variant X3
ubiquitin-protein ligase E3C-like, transcript variant X4
ubiquitin-protein ligase E3C-like, transcript variant X1
ubiquitin-protein ligase E3C-like isoform X1
ubiquitin-protein ligase E3C-like, transcript variant X2
ubiquitin-protein ligase E3C-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 229 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
testis-specific Y-encoded protein 1-like, transcript variant X1
testis-specific Y-encoded protein 1-like, transcript variant X2
testis-specific Y-encoded protein 1-like isoform X1
testis-specific Y-encoded protein 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 13% coverage of the annotated genomic feature by RNAseq alignments
RNA-binding motif protein, X chromosome-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins, and 16% coverage of the annotated genomic feature by RNAseq alignments
protein Shroom2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
protein Shroom2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 4 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
protein Shroom2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
histone demethylase UTY, transcript variant X2
histone demethylase UTY, transcript variant X4
histone demethylase UTY, transcript variant X3
histone demethylase UTY, transcript variant X1
lysine-specific demethylase 6A isoform X1
histone demethylase UTY, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 51 ESTs, 86 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysine-specific demethylase 6A isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ATP-dependent RNA helicase DDX3X, transcript variant X1
ATP-dependent RNA helicase DDX3X, transcript variant X2
ATP-dependent RNA helicase DDX3X isoform X2
ATP-dependent RNA helicase DDX3X isoform X1
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 350 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X2
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
probable ubiquitin carboxyl-terminal hydrolase FAF-X, transcript variant X3
probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2
neuronal membrane glycoprotein M6-b-like
LOW QUALITY PROTEIN: neuronal membrane glycoprotein M6-b-like
oral-facial-digital syndrome 1 protein-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins, and 64% coverage of the annotated genomic feature by RNAseq alignments
zinc finger X-chromosomal protein, transcript variant X2
zinc finger X-chromosomal protein, transcript variant X3
zinc finger X-chromosomal protein, transcript variant X1
zinc finger X-chromosomal protein, transcript variant X4
zinc finger X-chromosomal protein isoform X2
zinc finger X-chromosomal protein isoform X3
zinc finger X-chromosomal protein isoform X1
zinc finger X-chromosomal protein isoform X4
eukaryotic translation initiation factor 2 subunit 3, X-linked, transcript variant X2
eukaryotic translation initiation factor 2 subunit 3, X-linked, transcript variant X1
eukaryotic translation initiation factor 2 subunit 3, X-linked isoform X1
eukaryotic translation initiation factor 2 subunit 3, X-linked, transcript variant X3
eukaryotic translation initiation factor 2 subunit 3, X-linked isoform X2
membrane-bound transcription factor site-2 protease-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
membrane bound transcription factor peptidase, site 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 32% coverage of the annotated genomic feature by RNAseq alignments
membrane-bound transcription factor site-2 protease
eukaryotic translation initiation factor 1A, X-chromosomal, transcript variant X2
eukaryotic translation initiation factor 1A, X-chromosomal, transcript variant X1
eukaryotic translation initiation factor 1A, X-chromosomal isoform X2
eukaryotic translation initiation factor 1A, X-chromosomal isoform X1
heat shock transcription factor, Y-linked-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 9 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein