Lemur catta isolate mLemCat1 chromosome 24, mLemCat1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Lemuridae; Lemur.
REFSEQ INFORMATION: The reference sequence is identical to\nCM036495.1.\nAssembly name: mLemCat1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/04. The original whole-genome shotgun project has the\naccession JAJGPY000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 16-JUL-2021\nAssembly Method :: hifiasm v. 0.12-r304; purge_dups v.\n 1.2.5; bionano_solve v.\n Solve3.6.1_11162020; salsa2 v. v2.2;\n gEVAL manual curation v. 2021-07-16\nAssembly Name :: mLemCat1.pri\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 20.81x\nSequencing Technology :: Pacbio Sequel II CCS; 10X Genomics linked\n reads; Bionano Genomics DLS; Arima\n Genomics v1 Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Lemur catta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Fraser extracellular matrix complex subunit 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Fraser extracellular matrix complex subunit 1, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
extracellular matrix organizing protein FRAS1 isoform X1
extracellular matrix organizing protein FRAS1 isoform X2
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
progestin and adipoQ receptor family member 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, 17 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
progestin and adipoQ receptor family member 3, transcript variant X1
progestin and adipoQ receptor family member 3, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
progestin and adipoQ receptor family member 3, transcript variant X3
progestin and adipoQ receptor family member 3, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, 17 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
progestin and adipoQ receptor family member 3, transcript variant X6
progestin and adipoQ receptor family member 3, transcript variant X4
progestin and adipoQ receptor family member 3 isoform X2
progestin and adipoQ receptor family member 3 isoform X1
N-alpha-acetyltransferase 11, NatA catalytic subunit
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: N-alpha-acetyltransferase 11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 8% coverage of the annotated genomic feature by RNAseq alignments
ANTXR cell adhesion molecule 2, transcript variant X2
ANTXR cell adhesion molecule 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 25% coverage of the annotated genomic feature by RNAseq alignments
fibroblast growth factor 5, transcript variant X1
fibroblast growth factor 5, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 Proteins, and 32% coverage of the annotated genomic feature by RNAseq alignments
cilia and flagella associated protein 299, transcript variant X1
cilia and flagella associated protein 299, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
cilia- and flagella-associated protein 299
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
protein kinase cGMP-dependent 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 12 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
protein kinase cGMP-dependent 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
cGMP-dependent protein kinase 2 isoform X2
cGMP-dependent protein kinase 2 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
RasGEF domain family member 1B, transcript variant X3
RasGEF domain family member 1B, transcript variant X1
RasGEF domain family member 1B, transcript variant X2
RasGEF domain family member 1B, transcript variant X4
ras-GEF domain-containing family member 1B isoform X2
ras-GEF domain-containing family member 1B isoform X1
uncharacterized LOC123627379, transcript variant X2
uncharacterized LOC123627379, transcript variant X1
heterogeneous nuclear ribonucleoprotein D, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 216 ESTs, 8 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heterogeneous nuclear ribonucleoprotein D, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 220 ESTs, 15 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heterogeneous nuclear ribonucleoprotein D, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 333 ESTs, 10 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heterogeneous nuclear ribonucleoprotein D, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 337 ESTs, 16 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
heterogeneous nuclear ribonucleoprotein D0 isoform X4
heterogeneous nuclear ribonucleoprotein D0 isoform X2
heterogeneous nuclear ribonucleoprotein D0 isoform X3
heterogeneous nuclear ribonucleoprotein D0 isoform X1
heterogeneous nuclear ribonucleoprotein D like, transcript variant X1
heterogeneous nuclear ribonucleoprotein D like, transcript variant X2
heterogeneous nuclear ribonucleoprotein D like, transcript variant X3
heterogeneous nuclear ribonucleoprotein D-like
transmembrane protein 150C, transcript variant X2
transmembrane protein 150C, transcript variant X1
transmembrane protein 150C, transcript variant X4
transmembrane protein 150C, transcript variant X3
uncharacterized LOC123627386, transcript variant X2
uncharacterized LOC123627386, transcript variant X1
SEC31 homolog A, COPII coat complex component, transcript variant X5
SEC31 homolog A, COPII coat complex component, transcript variant X6
SEC31 homolog A, COPII coat complex component, transcript variant X4
SEC31 homolog A, COPII coat complex component, transcript variant X3
SEC31 homolog A, COPII coat complex component, transcript variant X1
SEC31 homolog A, COPII coat complex component, transcript variant X2
SEC31 homolog A, COPII coat complex component, transcript variant X8
SEC31 homolog A, COPII coat complex component, transcript variant X7
protein transport protein Sec31A isoform X7
protein transport protein Sec31A isoform X4
protein transport protein Sec31A isoform X6
protein transport protein Sec31A isoform X5
protein transport protein Sec31A isoform X3
protein transport protein Sec31A isoform X2
protein transport protein Sec31A isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 ESTs, 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: DNA transposase THAP9
lin-54 DREAM MuvB core complex component, transcript variant X2
lin-54 DREAM MuvB core complex component, transcript variant X1
COP9 signalosome subunit 4, transcript variant X1
COP9 signalosome subunit 4, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 219 ESTs, 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
COP9 signalosome complex subunit 4 isoform X1
COP9 signalosome complex subunit 4 isoform X2
placenta associated 8, transcript variant X2
placenta associated 8, transcript variant X1
uncharacterized LOC123627231, transcript variant X3
uncharacterized LOC123627231, transcript variant X1
uncharacterized LOC123627231, transcript variant X5
uncharacterized LOC123627231, transcript variant X2
uncharacterized LOC123627231, transcript variant X4
uncharacterized LOC123627232, transcript variant X2
uncharacterized LOC123627232, transcript variant X1
coenzyme Q2, polyprenyltransferase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 2 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
4-hydroxybenzoate polyprenyltransferase, mitochondrial isoform X2
coenzyme Q2, polyprenyltransferase, transcript variant X4
coenzyme Q2, polyprenyltransferase, transcript variant X1
4-hydroxybenzoate polyprenyltransferase, mitochondrial isoform X1
coenzyme Q2, polyprenyltransferase, transcript variant X3
4-hydroxybenzoate polyprenyltransferase, mitochondrial isoform X3
uncharacterized LOC123627241, transcript variant X2
uncharacterized LOC123627241, transcript variant X1
uncharacterized LOC123627241, transcript variant X3
helicase, POLQ like, transcript variant X1
helicase, POLQ like, transcript variant X3
helicase, POLQ like, transcript variant X2
uncharacterized LOC123627242, transcript variant X3
uncharacterized LOC123627242, transcript variant X2
uncharacterized LOC123627242, transcript variant X1
uncharacterized LOC123627242, transcript variant X5
uncharacterized LOC123627242, transcript variant X4
28S ribosomal protein S18c, mitochondrial
abraxas 1, BRCA1 A complex subunit, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
abraxas 1, BRCA1 A complex subunit, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
BRCA1-A complex subunit Abraxas 1 isoform X1
BRCA1-A complex subunit Abraxas 1 isoform X2
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 10 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
LOW QUALITY PROTEIN: homeobox protein Nkx-6.1
CDP-diacylglycerol synthase 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 ESTs, 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
CDP-diacylglycerol synthase 1, transcript variant X4
CDP-diacylglycerol synthase 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
CDP-diacylglycerol synthase 1, transcript variant X3
phosphatidate cytidylyltransferase 1 isoform X1
phosphatidate cytidylyltransferase 1 isoform X2
CDP-diacylglycerol synthase 1, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
CDP-diacylglycerol synthase 1, transcript variant X6
phosphatidate cytidylyltransferase 1 isoform X3
WD repeat and FYVE domain-containing protein 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
Rho GTPase activating protein 24, transcript variant X1
rho GTPase-activating protein 24 isoform X1
Rho GTPase activating protein 24, transcript variant X4
Rho GTPase activating protein 24, transcript variant X3
Rho GTPase activating protein 24, transcript variant X5
rho GTPase-activating protein 24 isoform X3
Rho GTPase activating protein 24, transcript variant X2
rho GTPase-activating protein 24 isoform X2
mitogen-activated protein kinase 10, transcript variant X4
mitogen-activated protein kinase 10, transcript variant X3
mitogen-activated protein kinase 10, transcript variant X8
mitogen-activated protein kinase 10, transcript variant X2
mitogen-activated protein kinase 10, transcript variant X11
mitogen-activated protein kinase 10, transcript variant X1
mitogen-activated protein kinase 10, transcript variant X10
mitogen-activated protein kinase 10, transcript variant X7
mitogen-activated protein kinase 10, transcript variant X9
mitogen-activated protein kinase 10, transcript variant X6
mitogen-activated protein kinase 10, transcript variant X5
mitogen-activated protein kinase 10 isoform X4
mitogen-activated protein kinase 10 isoform X2
mitogen-activated protein kinase 10 isoform X1
mitogen-activated protein kinase 10 isoform X3
mitogen-activated protein kinase 10 isoform X5
mitogen-activated protein kinase 10 isoform X7
mitogen-activated protein kinase 10 isoform X6
mitogen-activated protein kinase 10, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 286 ESTs, 2 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
mitogen-activated protein kinase 10 isoform X8
protein tyrosine phosphatase non-receptor type 13, transcript variant X1
protein tyrosine phosphatase non-receptor type 13, transcript variant X4
protein tyrosine phosphatase non-receptor type 13, transcript variant X3
protein tyrosine phosphatase non-receptor type 13, transcript variant X6
protein tyrosine phosphatase non-receptor type 13, transcript variant X8
protein tyrosine phosphatase non-receptor type 13, transcript variant X2
protein tyrosine phosphatase non-receptor type 13, transcript variant X7
protein tyrosine phosphatase non-receptor type 13, transcript variant X5
protein tyrosine phosphatase non-receptor type 13, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 59 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
tyrosine-protein phosphatase non-receptor type 13 isoform X1
tyrosine-protein phosphatase non-receptor type 13 isoform X4
tyrosine-protein phosphatase non-receptor type 13 isoform X3
tyrosine-protein phosphatase non-receptor type 13 isoform X6
tyrosine-protein phosphatase non-receptor type 13 isoform X8
tyrosine-protein phosphatase non-receptor type 13 isoform X2
tyrosine-protein phosphatase non-receptor type 13 isoform X7
tyrosine-protein phosphatase non-receptor type 13 isoform X5
tyrosine-protein phosphatase non-receptor type 13 isoform X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 84% coverage of the annotated genomic feature by RNAseq alignments
AF4/FMR2 family member 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
AF4/FMR2 family member 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
AF4/FMR2 family member 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
AF4/FMR2 family member 1, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123627301, transcript variant X2
uncharacterized LOC123627301, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 13 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
ADP-ribose pyrophosphatase, mitochondrial
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 2% coverage of the annotated genomic feature by RNAseq alignments
dentin matrix acidic phosphoprotein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 7% coverage of the annotated genomic feature by RNAseq alignments
dentin matrix acidic phosphoprotein 1, transcript variant X2
dentin matrix acidic phosphoprotein 1 isoform X1
dentin matrix acidic phosphoprotein 1 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
matrix extracellular phosphoglycoprotein, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
matrix extracellular phosphoglycoprotein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 12% coverage of the annotated genomic feature by RNAseq alignments
matrix extracellular phosphoglycoprotein isoform X1
matrix extracellular phosphoglycoprotein isoform X2
RAD9, HUS1, RAD1-interacting nuclear orphan protein 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
LOW QUALITY PROTEIN: RAD9, HUS1, RAD1-interacting nuclear orphan protein 1-like
polycystin 2, transient receptor potential cation channel
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 68% coverage of the annotated genomic feature by RNAseq alignments
ATP binding cassette subfamily G member 2 (Junior blood group), transcript variant X1
ATP binding cassette subfamily G member 2 (Junior blood group), transcript variant X3
ATP binding cassette subfamily G member 2 (Junior blood group), transcript variant X4
ATP binding cassette subfamily G member 2 (Junior blood group), transcript variant X2
broad substrate specificity ATP-binding cassette transporter ABCG2
protein phosphatase, Mg2+/Mn2+ dependent 1K
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 56 ESTs, 7 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
probable E3 ubiquitin-protein ligase HERC6
HECT and RLD domain containing E3 ubiquitin protein ligase 5, transcript variant X2
HECT and RLD domain containing E3 ubiquitin protein ligase 5, transcript variant X1
E3 ISG15--protein ligase HERC5 isoform X1
E3 ISG15--protein ligase HERC5 isoform X2
HECT and RLD domain containing E3 ubiquitin protein ligase 5, transcript variant X3
E3 ISG15--protein ligase HERC5 isoform X3
COORDINATES: nucleotide motif:Rfam:12.0:RF00426
phosphatidylinositol glycan anchor biosynthesis class Y
phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
HECT and RLD domain containing E3 ubiquitin protein ligase 3, transcript variant X1
HECT and RLD domain containing E3 ubiquitin protein ligase 3, transcript variant X2
HECT and RLD domain containing E3 ubiquitin protein ligase 3, transcript variant X3
probable E3 ubiquitin-protein ligase HERC3 isoform X1
probable E3 ubiquitin-protein ligase HERC3 isoform X2
probable E3 ubiquitin-protein ligase HERC3 isoform X3
HECT and RLD domain containing E3 ubiquitin protein ligase 3, transcript variant X4
probable E3 ubiquitin-protein ligase HERC3 isoform X4
family with sequence similarity 13 member A, transcript variant X1
family with sequence similarity 13 member A, transcript variant X9
family with sequence similarity 13 member A, transcript variant X3
family with sequence similarity 13 member A, transcript variant X2
family with sequence similarity 13 member A, transcript variant X4
family with sequence similarity 13 member A, transcript variant X7
family with sequence similarity 13 member A, transcript variant X5
family with sequence similarity 13 member A, transcript variant X8
family with sequence similarity 13 member A, transcript variant X6
tigger transposable element-derived protein 2
G protein-regulated inducer of neurite outgrowth 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
serine-rich coiled-coil domain-containing protein 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins, and 53% coverage of the annotated genomic feature by RNAseq alignments
glutamate ionotropic receptor delta type subunit 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 12 ESTs, 1 Protein, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
glutamate ionotropic receptor delta type subunit 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 12 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, delta-2 isoform X2
glutamate receptor ionotropic, delta-2 isoform X1
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, transcript variant X1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1, transcript variant X2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2
hematopoietic prostaglandin D synthase, transcript variant X2
hematopoietic prostaglandin D synthase, transcript variant X1
hematopoietic prostaglandin D synthase isoform X2
hematopoietic prostaglandin D synthase isoform X1
PDZ and LIM domain 5, transcript variant X1
PDZ and LIM domain 5, transcript variant X9
PDZ and LIM domain 5, transcript variant X11
PDZ and LIM domain 5, transcript variant X3
PDZ and LIM domain 5, transcript variant X4
PDZ and LIM domain 5, transcript variant X12
PDZ and LIM domain 5, transcript variant X6
PDZ and LIM domain 5, transcript variant X10
PDZ and LIM domain 5, transcript variant X5
PDZ and LIM domain 5, transcript variant X8
PDZ and LIM domain 5, transcript variant X2
PDZ and LIM domain 5, transcript variant X7
PDZ and LIM domain protein 5 isoform X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
COORDINATES: nucleotide motif:Rfam:12.0:RF00066
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
bone morphogenetic protein receptor type 1B, transcript variant X1
bone morphogenetic protein receptor type 1B, transcript variant X2
bone morphogenetic protein receptor type-1B
unc-5 netrin receptor C, transcript variant X1
unc-5 netrin receptor C, transcript variant X2
pyruvate dehydrogenase E1 subunit alpha 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
pyruvate dehydrogenase E1 subunit alpha 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X2
pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
sperm-tail PG-rich repeat-containing protein 2
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X2
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X7
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X1
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X3
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X6
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X5
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X4
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 72 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
rap1 GTPase-GDP dissociation stimulator 1 isoform X1
rap1 GTPase-GDP dissociation stimulator 1 isoform X5
rap1 GTPase-GDP dissociation stimulator 1 isoform X3
rap1 GTPase-GDP dissociation stimulator 1 isoform X4
rap1 GTPase-GDP dissociation stimulator 1 isoform X6
rap1 GTPase-GDP dissociation stimulator 1 isoform X2
rap1 GTPase-GDP dissociation stimulator 1 isoform X7
rap1 GTPase-GDP dissociation stimulator 1 isoform X9
Rap1 GTPase-GDP dissociation stimulator 1, transcript variant X8
rap1 GTPase-GDP dissociation stimulator 1 isoform X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 50 ESTs, 2 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
eukaryotic translation initiation factor 4E, transcript variant X1
eukaryotic translation initiation factor 4E, transcript variant X2
eukaryotic translation initiation factor 4E isoform X1
eukaryotic translation initiation factor 4E isoform X2
alcohol dehydrogenase 5 (class III), chi polypeptide, transcript variant X1
alcohol dehydrogenase 5 (class III), chi polypeptide, transcript variant X2
alcohol dehydrogenase class-3 isoform X1
alcohol dehydrogenase class-3 isoform X2
alcohol dehydrogenase 4 (class II), pi polypeptide
all-trans-retinol dehydrogenase [NAD(+)] ADH4
all-trans-retinol dehydrogenase [NAD(+)] ADH4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 24 ESTs, 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123627352, transcript variant X1
uncharacterized LOC123627352, transcript variant X2
alcohol dehydrogenase 1C-like, transcript variant X2
alcohol dehydrogenase 1C-like, transcript variant X1
alcohol dehydrogenase 1C-like, transcript variant X3
alcohol dehydrogenase 1C-like isoform X2
alcohol dehydrogenase 1C-like isoform X1
alcohol dehydrogenase 1C-like isoform X3
alcohol dehydrogenase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 ESTs, 54 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
alcohol dehydrogenase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
all-trans-retinol dehydrogenase [NAD(+)] ADH7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 28% coverage of the annotated genomic feature by RNAseq alignments
tRNA methyltransferase 10A, transcript variant X1
tRNA methyltransferase 10A, transcript variant X3
tRNA methyltransferase 10A, transcript variant X2
microsomal triglyceride transfer protein, transcript variant X1
microsomal triglyceride transfer protein, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
microsomal triglyceride transfer protein large subunit isoform X1
microsomal triglyceride transfer protein large subunit isoform X2
microsomal triglyceride transfer protein, transcript variant X3
microsomal triglyceride transfer protein large subunit isoform X3
chromosome 24 C4orf54 homolog, transcript variant X4
chromosome 24 C4orf54 homolog, transcript variant X3
chromosome 24 C4orf54 homolog, transcript variant X2
chromosome 24 C4orf54 homolog, transcript variant X1
uncharacterized protein C4orf54 homolog isoform X1
uncharacterized protein C4orf54 homolog isoform X2
dual adaptor of phosphotyrosine and 3-phosphoinositides 1, transcript variant X2
dual adaptor of phosphotyrosine and 3-phosphoinositides 1, transcript variant X1
dual adapter for phosphotyrosine and 3-phosphotyrosine and 3-phosphoinositide
late endosomal/lysosomal adaptor, MAPK and MTOR activator 3
DnaJ heat shock protein family (Hsp40) member B14, transcript variant X1
DnaJ heat shock protein family (Hsp40) member B14, transcript variant X2
dnaJ homolog subfamily B member 14 isoform X2
dnaJ homolog subfamily B member 14 isoform X1
DnaJ heat shock protein family (Hsp40) member B14, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
dnaJ homolog subfamily B member 14 isoform X3
sterile alpha motif domain-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 66% coverage of the annotated genomic feature by RNAseq alignments
DNA damage-inducible transcript 4-like protein
protein phosphatase 3 catalytic subunit alpha, transcript variant X2
protein phosphatase 3 catalytic subunit alpha, transcript variant X1
serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X2
serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform isoform X1
B cell scaffold protein with ankyrin repeats 1, transcript variant X1
B cell scaffold protein with ankyrin repeats 1, transcript variant X2
B-cell scaffold protein with ankyrin repeats isoform X1
B-cell scaffold protein with ankyrin repeats isoform X2
solute carrier family 39 member 8, transcript variant X3
solute carrier family 39 member 8, transcript variant X1
solute carrier family 39 member 8, transcript variant X2
nuclear factor kappa B subunit 1, transcript variant X1
nuclear factor kappa B subunit 1, transcript variant X2
nuclear factor NF-kappa-B p105 subunit isoform X1
nuclear factor NF-kappa-B p105 subunit isoform X2
ubiquitin conjugating enzyme E2 D3, transcript variant X2
ubiquitin conjugating enzyme E2 D3, transcript variant X6
ubiquitin conjugating enzyme E2 D3, transcript variant X4
ubiquitin conjugating enzyme E2 D3, transcript variant X7
ubiquitin conjugating enzyme E2 D3, transcript variant X3
ubiquitin conjugating enzyme E2 D3, transcript variant X1
ubiquitin conjugating enzyme E2 D3, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
CDGSH iron-sulfur domain-containing protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 Proteins, and 43% coverage of the annotated genomic feature by RNAseq alignments
solute carrier family 9 member B2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 49 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
solute carrier family 9 member B2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 49 ESTs, 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
sodium/hydrogen exchanger 9B2 isoform X1
solute carrier family 9 member B2, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs, 2 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
sodium/hydrogen exchanger 9B2 isoform X2
3-hydroxybutyrate dehydrogenase 2, transcript variant X3
3-hydroxybutyrate dehydrogenase 2, transcript variant X4
3-hydroxybutyrate dehydrogenase 2, transcript variant X5
3-hydroxybutyrate dehydrogenase 2, transcript variant X1
3-hydroxybutyrate dehydrogenase 2, transcript variant X2
ankyrin repeat domain-containing protein 26-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123627217, transcript variant X1
uncharacterized LOC123627217, transcript variant X4
uncharacterized LOC123627217, transcript variant X2
uncharacterized LOC123627217, transcript variant X3
ATP synthase subunit e, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
COORDINATES: nucleotide motif:Rfam:12.0:RF00015
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 22 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00399
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
LOW QUALITY PROTEIN: TNFAIP3-interacting protein 1-like
pyroglutamylated RF-amide peptide receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 4 Proteins, and 31% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123627269, transcript variant X2
uncharacterized LOC123627269, transcript variant X1
coiled-coil domain-containing protein 144A-like
uncharacterized LOC123627254, transcript variant X1
uncharacterized LOC123627254, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 55% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 4 bases at 4 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: cancer-associated gene 1 protein-like
serine/threonine-protein kinase RIO1-like
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78% coverage of the annotated genomic feature by RNAseq alignments
ankyrin repeat domain-containing protein 26-like, transcript variant X1
ankyrin repeat domain-containing protein 26-like, transcript variant X2
ankyrin repeat domain-containing protein 26-like, transcript variant X3
putative coiled-coil domain-containing protein 144C isoform X1
ankyrin repeat domain-containing protein 26-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123627249, transcript variant X6
uncharacterized LOC123627249, transcript variant X5
uncharacterized LOC123627249, transcript variant X4
uncharacterized LOC123627249, transcript variant X1
uncharacterized LOC123627249, transcript variant X3
uncharacterized LOC123627249, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
zinc finger and BTB domain-containing protein 47-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 3 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 17% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 5 bases in 3 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger and BTB domain-containing protein 47-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 59% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 54% coverage of the annotated genomic feature by RNAseq alignments