Nonomuraea gerenzanensis strain L70 plasmid p2, complete sequence.
type: Entry
definition: Nonomuraea gerenzanensis strain L70 plasmid p2, complete sequence.
sequence version: NZ_CP084060.1
sequence date: 2022-10-21
sequence: sequence
division: CON
label: NZ_CP084060.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN21565625
keyword: RefSeq
source: Nonomuraea gerenzanensis
organism: Nonomuraea gerenzanensis
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Streptosporangiaceae; Nonomuraea.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP084060.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 7.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 87.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 11:47:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 11,242\nCDSs (total) :: 11,151\nGenes (coding) :: 11,023\nCDSs (with protein) :: 11,023\nGenes (RNA) :: 91\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 3\nPseudo Genes (total) :: 128\nCDSs (without protein) :: 128\nPseudo Genes (ambiguous residues) :: 0 of 128\nPseudo Genes (frameshifted) :: 15 of 128\nPseudo Genes (incomplete) :: 119 of 128\nPseudo Genes (internal stop) :: 4 of 128\nPseudo Genes (multiple problems) :: 9 of 128\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 7699
topology: circular
so has quality: SO_0000988
location: 1..7699
location: region:1-7699:1
RO_0002162: 93944

NZ_CP084060
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN21565625
type: BioSample
SIO_000068: biosample

1
title: Redirection of acyl donor metabolic flux for lipopeptide A40926B0 biosynthesis based on the erCRISPR system
author: Xia, T.
journal: Unpublished

2
title: Direct Submission
author: Xia, T.
journal: Submitted (23-SEP-2021) Medicine School, Zhejiang, Yuhangtang, Hangzhou 310058, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7699:1
position: 7699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-7699:1:source
so part of: sequence
organism: Nonomuraea gerenzanensis
mol type: genomic DNA
strain: L70
isolation source: soil
plasmid: p2
country: China:Hangzhou
collection date: 2017-01-21

93944
type: Taxonomy
SIO_000068: taxonomy

LCN96_RS56360
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56360
old locus tag: LCN96_56360
so part of: sequence
location: complement(join(7470..7699,1..298))
location: region:1-7699:-1
so has part: feature:1-298:-1:exon
so has part: feature:7470-7699:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7699:-1
position: 7699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-298:-1:exon

position:298:-1
position: 298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:7470-7699:-1:exon

position:7470:-1
position: 7470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LCN96_RS56360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56360
old locus tag: LCN96_56360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEGRTERSKHLGAGTRVDFQEGMKAADPKRTAVYFIKHGSFAAKEYQNCVPAEWTAPGDGPGRFWGYWKLERRTAAVELTPEQAVRAARIARRWARAQGTTRQAIVTRTQGGRPMQDRPDVMGLAGAQLLAADRRARRRRVRRRVKRFAHGRGFISVNNGQIFAVAMARALSLN
SIO_010081: LCN96_RS56360
subclass of: SO_0000673
so part of: LCN96_RS56360
location: complement(join(7470..7699,1..298))
location: region:1-7699:-1
so has part: feature:1-298:-1:exon
so has part: feature:7470-7699:-1:exon

WP_225276319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-298:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:7470-7699:-1:exon

LCN96_RS56365
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56365
old locus tag: LCN96_56365
so part of: sequence
location: complement(1255..2670)
location: region:1255-2670:-1
so has part: feature:1255-2670:-1:exon
subclass of: SO_0000010

position:1255:-1
position: 1255
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2670:-1
position: 2670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1255-2670:-1:exon

LCN96_RS56365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56365
old locus tag: LCN96_56365
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNFLFSALGKLLVWLAKQLAKLIALLVTQAVLHPRSSASAGVAAAGVAWLGWQLSLVILGGAFTALSTWKTAHPASFAATVGTWTRTWWHKWWIYRRQWNAVLTACGLSTQVKQVVALPKLRSVRSTPYWDHLVVEMQLGQALGGFVKMSDELRLGFKAQRILMKEARPRLLNVALMQRDPLLETVPASAIPASVEAINWRAVPVGIDEFGDPYTVSLLGGCTSCAGTMGAGKAGLEWNILRAIAPGIAAGLVRPVGIDPKLKELSQARQIFADGDYVGLDTPDLPDATLALLERLVEEMGAANAQDGATGERDFTPRPGRPLTLILIDELAPLLKYWPRRTRDKIEDALGLLLTQGRAAGFIVIGLIQEPTKDVFTLRDLFARRIALRLPTESHTEAALIEKATDYGAACHTIPESLPGLLFSLQEGARSTVRARLGYVTNQDIAELVDYLTPSATVVDLAERKNTVAA
SIO_010081: LCN96_RS56365
subclass of: SO_0000673
so part of: LCN96_RS56365
location: complement(1255..2670)
location: region:1255-2670:-1
so has part: feature:1255-2670:-1:exon

WP_192963560.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1255-2670:-1:exon

LCN96_RS56370
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56370
old locus tag: LCN96_56370
so part of: sequence
location: complement(2741..2989)
location: region:2741-2989:-1
so has part: feature:2741-2989:-1:exon
subclass of: SO_0000010

position:2741:-1
position: 2741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2989:-1
position: 2989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2741-2989:-1:exon

LCN96_RS56370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56370
old locus tag: LCN96_56370
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTARIGSRIDDVDVRMERVSRLIDSAARIDRELAAGLGCSASMTAIQGDIDVALAQSDTLQKAVRASLTQERSTRRRTASTS
SIO_010081: LCN96_RS56370
subclass of: SO_0000673
so part of: LCN96_RS56370
location: complement(2741..2989)
location: region:2741-2989:-1
so has part: feature:2741-2989:-1:exon

WP_192963561.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2741-2989:-1:exon

LCN96_RS56375
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56375
old locus tag: LCN96_56375
so part of: sequence
location: complement(2986..3426)
location: region:2986-3426:-1
so has part: feature:2986-3426:-1:exon
subclass of: SO_0000010

position:2986:-1
position: 2986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3426:-1
position: 3426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2986-3426:-1:exon

LCN96_RS56375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56375
old locus tag: LCN96_56375
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADYDKRRKAGEMARSGNVKPLRTVNFEPKRIRKAKRKALVRGYVANKVADVRTEMQDRAEFFRNLRIMKMQRRKIAAEMAFLADDLRALQREVASVERRHPTVDLKLVDETHDLVRDALKAASVAADEYFAFSRQRIYYIKELAA
SIO_010081: LCN96_RS56375
subclass of: SO_0000673
so part of: LCN96_RS56375
location: complement(2986..3426)
location: region:2986-3426:-1
so has part: feature:2986-3426:-1:exon

WP_225276320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2986-3426:-1:exon

LCN96_RS56380
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56380
old locus tag: LCN96_56380
so part of: sequence
location: complement(3621..3800)
location: region:3621-3800:-1
so has part: feature:3621-3800:-1:exon
subclass of: SO_0000010

position:3621:-1
position: 3621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3800:-1
position: 3800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3621-3800:-1:exon

LCN96_RS56380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56380
old locus tag: LCN96_56380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPHDQAYDRAHSRLTRHAAAAYQASRADEIDGYRYNSCGCVWQGDELVERCSAHSRHSS
SIO_010081: LCN96_RS56380
subclass of: SO_0000673
so part of: LCN96_RS56380
location: complement(3621..3800)
location: region:3621-3800:-1
so has part: feature:3621-3800:-1:exon

WP_225276321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3621-3800:-1:exon

LCN96_RS56385
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56385
old locus tag: LCN96_56385
so part of: sequence
location: complement(4192..4581)
location: region:4192-4581:-1
so has part: feature:4192-4581:-1:exon
subclass of: SO_0000010

position:4192:-1
position: 4192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4581:-1
position: 4581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4192-4581:-1:exon

LCN96_RS56385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56385
old locus tag: LCN96_56385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFTNFKIDQAATFRGVAFLSSSPKTAFGSTQQETTKDGTPKWTVEVIGSTVDQFGKPANEVVKIGIASHTDPGKGLTMYTPIELSQFEIGVMEKTRKNPTTGEEKIIGVQVWFRAEAVRPIAAAPPKAA
SIO_010081: LCN96_RS56385
subclass of: SO_0000673
so part of: LCN96_RS56385
location: complement(4192..4581)
location: region:4192-4581:-1
so has part: feature:4192-4581:-1:exon

WP_192963563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4192-4581:-1:exon

LCN96_RS56390
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56390
old locus tag: LCN96_56390
so part of: sequence
location: 4736..5461
location: region:4736-5461:1
so has part: feature:4736-5461:1:exon
subclass of: SO_0000010

position:4736:1
position: 4736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5461:1
position: 5461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4736-5461:1:exon

LCN96_RS56390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56390
old locus tag: LCN96_56390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003952348.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GntR family transcriptional regulator
translation: MEALAPYRRIAEKIKQRITRGDLRPGDQIPSVREIMRTEGVSTATATRVAAVLRAEGFAETVPGIGTVVAQPRNLTTGPDRLQMLRATGDGLRPGERTEIIGASLVPAPRHVADALDLDEGADVVRRQRAYYDDLGVVALSTSWLPGQLASAAPELLEAAPLPKMTFGLVEERTGRRAVKRRDVVAIKPVPEDAAALLDLAAGTPALTMTNYYWDQHGNATEYAEDYLGHDRPLFAEYDLD
SIO_010081: LCN96_RS56390
subclass of: SO_0000673
so part of: LCN96_RS56390
location: 4736..5461
location: region:4736-5461:1
so has part: feature:4736-5461:1:exon

WP_192963556.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4736-5461:1:exon

LCN96_RS56395
type: Gene
subclass of: SO_0000704
RO_0002162: 93944
locus tag: LCN96_RS56395
old locus tag: LCN96_56395
so part of: sequence
location: complement(6737..7357)
location: region:6737-7357:-1
so has part: feature:6737-7357:-1:exon
subclass of: SO_0000010

position:6737:-1
position: 6737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7357:-1
position: 7357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6737-7357:-1:exon

LCN96_RS56395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 93944
locus tag: LCN96_RS56395
old locus tag: LCN96_56395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006601860.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MSLTVALINLKPGTGKTTSAVWLAHAFYELGRPVLLVDADPAASALEWSDLADGFPFRIIGMPSKELHRRVPEVAKPGEIVVIDAPQMEDHKGIARSVLRLADELVIPVAPHGIEINRMAPVADEIDDIQPVRATPARVSVLLNRINRSSTTHVETREDLTEDGWHVLTATVPFVNRYSQSFGLPVKARATEFEALAEELLKRGEG
SIO_010081: LCN96_RS56395
subclass of: SO_0000673
so part of: LCN96_RS56395
location: complement(6737..7357)
location: region:6737-7357:-1
so has part: feature:6737-7357:-1:exon

WP_192963558.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6737-7357:-1:exon