Nonomuraea gerenzanensis strain L70 plasmid p1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Streptosporangiales; Streptosporangiaceae; Nonomuraea.
Redirection of acyl donor metabolic flux for lipopeptide A40926B0 biosynthesis based on the erCRISPR system
Submitted (23-SEP-2021) Medicine School, Zhejiang, Yuhangtang, Hangzhou 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP084059.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 7.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 87.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/21/2022 11:47:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 11,242\nCDSs (total) :: 11,151\nGenes (coding) :: 11,023\nCDSs (with protein) :: 11,023\nGenes (RNA) :: 91\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 73\nncRNAs :: 3\nPseudo Genes (total) :: 128\nCDSs (without protein) :: 128\nPseudo Genes (ambiguous residues) :: 0 of 128\nPseudo Genes (frameshifted) :: 15 of 128\nPseudo Genes (incomplete) :: 119 of 128\nPseudo Genes (internal stop) :: 4 of 128\nPseudo Genes (multiple problems) :: 9 of 128\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012618.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012862.2
COORDINATES: similar to AA sequence:RefSeq:WP_010352900.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014133200.1
COORDINATES: protein motif:HMM:NF021509.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF038156.1
class V lanthionine synthetase subunit LxmK
COORDINATES: protein motif:HMM:NF038146.1
COORDINATES: protein motif:HMM:NF037672.2
COORDINATES: similar to AA sequence:RefSeq:WP_017585902.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007264908.1
COORDINATES: similar to AA sequence:RefSeq:WP_012893754.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:NF013696.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005465208.1
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: similar to AA sequence:RefSeq:WP_017620190.1
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:NF019656.2
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: similar to AA sequence:RefSeq:WP_011212208.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019032874.1
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF012610.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003949541.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF016564.2
GO:0051301 - cell division [Evidence IEA]
SsgA family sporulation/cell division regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012895741.1
COORDINATES: protein motif:HMM:NF024970.2