Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence.
Bacteria; Deinococcota; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.
Complete sequence of plasmid 1 of Deinococcus peraridilitoris DSM 19664
Submitted (07-MAR-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP003383.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087340\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Deinococcus peraridilitoris DSM 19664\ncollection_date :: 2007\nlat_lon :: -24.60 -69.53\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Chile\nenvironment :: Soil\nnum_replicons :: 3\nref_biomaterial :: DSM 19664, CIP 109416, KR-200, LMG 22246\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Aerobe\nisol_growth_condt :: 17625166\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04183\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2009\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Arid soil collected from a coastal desert\n north of Antofagasta in Chile\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nTemperature Range :: Mesophile\nTemperature Optimum :: 30C\npH :: 6.5 - 8.0\nGram Staining :: Gram+\nPhenotypes :: Radiation resistant\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/03/2023 01:25:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,428\nCDSs (total) :: 4,365\nGenes (coding) :: 4,294\nCDSs (with protein) :: 4,294\nGenes (RNA) :: 63\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 71\nCDSs (without protein) :: 71\nPseudo Genes (ambiguous residues) :: 0 of 71\nPseudo Genes (frameshifted) :: 27 of 71\nPseudo Genes (incomplete) :: 51 of 71\nPseudo Genes (internal stop) :: 11 of 71\nPseudo Genes (multiple problems) :: 16 of 71\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Arid soil collected from a coastal desert north of Antofagasta in Chile
type strain of Deinococcus peraridilitoris
COORDINATES: similar to AA sequence:RefSeq:WP_015234562.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011526066.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF038114.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037015.2
COORDINATES: protein motif:HMM:NF022338.2
COORDINATES: similar to AA sequence:RefSeq:WP_019585370.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013555526.1
COORDINATES: protein motif:HMM:NF017416.2
helicase, type I site-specific restriction-modification system restriction subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013841445.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019588181.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530502.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013555452.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013623206.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: similar to AA sequence:RefSeq:WP_013555833.1
GO:0015891 - siderophore transport [Evidence IEA]
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019008442.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015365.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558110.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012694528.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611297.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: similar to AA sequence:RefSeq:WP_020676302.1
COORDINATES: protein motif:HMM:NF012464.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024729.2
integrase core domain-containing protein
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF024803.2
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009283510.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019009648.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012621.2
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020375249.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018991683.1
COORDINATES: similar to AA sequence:RefSeq:WP_014377073.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015231216.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585137.1
COORDINATES: similar to AA sequence:RefSeq:WP_009539693.1
COORDINATES: similar to AA sequence:RefSeq:WP_018991681.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013566719.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012257.2
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015231603.1
COORDINATES: similar to AA sequence:RefSeq:WP_019020697.1
COORDINATES: similar to AA sequence:RefSeq:WP_012645955.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_019143284.1
COORDINATES: protein motif:HMM:NF025004.2
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014253181.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234561.1
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013556076.1
beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase
COORDINATES: protein motif:HMM:NF015791.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02118.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: protein motif:HMM:NF039283.1
COORDINATES: similar to AA sequence:RefSeq:WP_020160124.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013614203.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234090.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008678639.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555535.1
COORDINATES: protein motif:HMM:NF028235.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF013053.2
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_015231463.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_012623604.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013779798.1
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:NF024808.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012692.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024303.2
GO:0033926 - glycopeptide alpha-N-acetylgalactosaminidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015235078.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF012766.2
aminopeptidase P family N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013158607.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_013014708.1
COORDINATES: similar to AA sequence:RefSeq:WP_013157505.1
COORDINATES: similar to AA sequence:RefSeq:WP_019997639.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_013014703.1
COORDINATES: protein motif:HMM:NF013239.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015509.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01439.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015231661.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231360.1
COORDINATES: similar to AA sequence:RefSeq:WP_012693814.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012947834.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019588390.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_012929749.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235706.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611089.1
COORDINATES: protein motif:HMM:NF024673.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611378.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587705.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012116823.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019588524.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588523.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588522.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588521.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00370.1
COORDINATES: similar to AA sequence:RefSeq:WP_018131854.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019007144.1
GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015235547.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007356202.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012693824.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555570.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019586973.1
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF014048.2
GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019011632.1
COORDINATES: protein motif:HMM:NF024092.2
COORDINATES: similar to AA sequence:RefSeq:WP_012216360.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022659.2
COORDINATES: similar to AA sequence:RefSeq:WP_017870389.1
excalibur calcium-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019585342.1
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612053.1
COORDINATES: protein motif:HMM:NF025000.2
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: protein motif:HMM:NF013677.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: similar to AA sequence:RefSeq:WP_015163759.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558197.1
COORDINATES: protein motif:HMM:NF033540.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234638.1
COORDINATES: protein motif:HMM:NF013539.2
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012693185.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530246.1
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: similar to AA sequence:RefSeq:WP_013013707.1
COORDINATES: similar to AA sequence:RefSeq:WP_009673855.1
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: similar to AA sequence:RefSeq:WP_007578484.1
COORDINATES: similar to AA sequence:RefSeq:WP_007921833.1
COORDINATES: similar to AA sequence:RefSeq:WP_012891563.1
COORDINATES: protein motif:HMM:NF040024.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235353.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015235027.1
COORDINATES: similar to AA sequence:RefSeq:WP_006454306.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:TIGR02607.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235340.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231322.1
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: protein motif:HMM:NF025056.2
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF016952.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014682871.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612272.1
COORDINATES: protein motif:HMM:NF024776.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040393.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231687.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236151.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019587685.1
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019069043.1
COORDINATES: protein motif:HMM:NF024980.2
COORDINATES: similar to AA sequence:RefSeq:WP_011529200.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588619.1
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694677.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588623.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694679.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694680.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_012695051.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695052.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695053.1
COORDINATES: similar to AA sequence:RefSeq:WP_013705002.1
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: similar to AA sequence:RefSeq:WP_020620454.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231501.1
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_007913813.1
COORDINATES: similar to AA sequence:RefSeq:WP_019585586.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: protein motif:HMM:NF033527.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235557.1
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011930.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612364.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694535.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694652.1
COORDINATES: similar to AA sequence:RefSeq:WP_012122300.1
COORDINATES: similar to AA sequence:RefSeq:WP_013158977.1
COORDINATES: similar to AA sequence:RefSeq:WP_018466762.1
COORDINATES: similar to AA sequence:RefSeq:WP_018466763.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695159.1
COORDINATES: similar to AA sequence:RefSeq:WP_018467739.1
COORDINATES: similar to AA sequence:RefSeq:WP_013012573.1
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: similar to AA sequence:RefSeq:WP_011525764.1
COORDINATES: protein motif:HMM:NF016894.2
GO:0008671 - 2-dehydro-3-deoxygalactonokinase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018437736.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012093135.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009764165.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014131732.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: similar to AA sequence:RefSeq:WP_020616580.1
COORDINATES: similar to AA sequence:RefSeq:WP_013536569.1
COORDINATES: similar to AA sequence:RefSeq:WP_007081494.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012693647.1
COORDINATES: similar to AA sequence:RefSeq:WP_019008357.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015231512.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010794468.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013319.2
GO:0008452 - RNA ligase activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015237040.1
COORDINATES: similar to AA sequence:RefSeq:WP_018630426.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586930.1
COORDINATES: similar to AA sequence:RefSeq:WP_014003892.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014695520.1
COORDINATES: protein motif:HMM:NF012772.2
GO:0071111 - cyclic-guanylate-specific phosphodiesterase activity [Evidence IEA]; GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_019008661.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587222.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF017183.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588444.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019588443.1
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: protein motif:HMM:NF024831.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: similar to AA sequence:RefSeq:WP_015148907.1
COORDINATES: similar to AA sequence:RefSeq:WP_014067517.1
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: similar to AA sequence:RefSeq:WP_014067514.1
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014067513.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020598570.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234819.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588435.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588434.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555322.1
GO:0016740 - transferase activity [Evidence IEA]
undecaprenyl-phosphate galactose phosphotransferase WbaP
COORDINATES: similar to AA sequence:RefSeq:WP_019586048.1
tyrosine-protein kinase domain-containing protein
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: protein motif:HMM:NF013842.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588710.1
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: protein motif:HMM:NF003915.0
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_009763973.1
COORDINATES: similar to AA sequence:RefSeq:WP_007755650.1
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: protein motif:HMM:NF014522.2
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019585535.1
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_020590588.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694537.1
COORDINATES: similar to AA sequence:RefSeq:WP_018700392.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234554.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183505.1
COORDINATES: similar to AA sequence:RefSeq:WP_019587112.1
vitamin K epoxide reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002628428.1
COORDINATES: protein motif:HMM:NF014471.2
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019588263.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011529973.1
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019010069.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012694845.1
FAD-dependent tricarballylate dehydrogenase TcuA
COORDINATES: similar to AA sequence:RefSeq:WP_012694846.1
COORDINATES: similar to AA sequence:RefSeq:WP_013557018.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01786
cyclic di-GMP riboswitch class II; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530226.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015652.2
COORDINATES: similar to AA sequence:RefSeq:WP_015236252.1
COORDINATES: protein motif:HMM:TIGR00710.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_019588159.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF013228.2
COORDINATES: similar to AA sequence:RefSeq:WP_016744414.1
COORDINATES: similar to AA sequence:RefSeq:WP_013474046.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008381151.1
COORDINATES: protein motif:HMM:NF033543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008492026.1
COORDINATES: protein motif:HMM:NF024784.2
COORDINATES: similar to AA sequence:RefSeq:WP_019011229.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024579.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005554094.1
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231694.1
COORDINATES: similar to AA sequence:RefSeq:WP_002621780.1
COORDINATES: similar to AA sequence:RefSeq:WP_015231388.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235008.1
COORDINATES: similar to AA sequence:RefSeq:WP_015235397.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF039734.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_015235469.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:NF013955.2
COORDINATES: similar to AA sequence:RefSeq:WP_015235251.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438509.1
GO:0006885 - regulation of pH [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234565.1
COORDINATES: similar to AA sequence:RefSeq:WP_010414496.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:TIGR01525.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236286.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695106.1
COORDINATES: similar to AA sequence:RefSeq:WP_013555537.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013555538.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012695113.1
metal-dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012695112.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695110.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695109.1
zinc ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013556888.1
COORDINATES: similar to AA sequence:RefSeq:WP_012695028.1
COORDINATES: similar to AA sequence:RefSeq:WP_019011738.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012694872.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012694878.1
COORDINATES: similar to AA sequence:RefSeq:WP_016861854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694870.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694869.1
COORDINATES: similar to AA sequence:RefSeq:WP_012120215.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115997.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694868.1
COORDINATES: similar to AA sequence:RefSeq:WP_012696331.1
COORDINATES: similar to AA sequence:RefSeq:WP_014684186.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694865.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586670.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694863.1
COORDINATES: similar to AA sequence:RefSeq:WP_019586672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012694861.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588771.1
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013558178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012259421.1
COORDINATES: similar to AA sequence:RefSeq:WP_005206419.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015234555.1
COORDINATES: similar to AA sequence:RefSeq:WP_011311435.1
COORDINATES: similar to AA sequence:RefSeq:WP_015236244.1
COORDINATES: similar to AA sequence:RefSeq:WP_019009353.1
COORDINATES: protein motif:HMM:NF018765.2
COORDINATES: similar to AA sequence:RefSeq:WP_013556196.1
COORDINATES: similar to AA sequence:RefSeq:WP_007865031.1
COORDINATES: similar to AA sequence:RefSeq:WP_011529323.1
COORDINATES: similar to AA sequence:RefSeq:WP_019588480.1
COORDINATES: similar to AA sequence:RefSeq:WP_012086044.1
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: similar to AA sequence:RefSeq:WP_015231201.1
COORDINATES: protein motif:HMM:NF024778.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019009327.1
COORDINATES: similar to AA sequence:RefSeq:WP_013905648.1
COORDINATES: protein motif:HMM:NF024864.2
COORDINATES: similar to AA sequence:RefSeq:WP_010490702.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012695116.1
COORDINATES: similar to AA sequence:RefSeq:WP_010476508.1
COORDINATES: protein motif:HMM:NF016910.2
COORDINATES: protein motif:HMM:NF012299.2
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: similar to AA sequence:RefSeq:WP_020385364.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008946221.1
COORDINATES: similar to AA sequence:RefSeq:WP_012844948.1
COORDINATES: similar to AA sequence:RefSeq:WP_014889625.1
COORDINATES: similar to AA sequence:RefSeq:WP_013457175.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019008660.1
COORDINATES: similar to AA sequence:RefSeq:WP_009676158.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: protein motif:HMM:NF014713.2
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_014376680.1
COORDINATES: similar to AA sequence:RefSeq:WP_015234563.1
COORDINATES: similar to AA sequence:RefSeq:WP_020216693.1
COORDINATES: protein motif:HMM:NF019607.2