Corvus cornix cornix isolate S_Up_H32 chromosome 27, ASM73873v5, whole genome shotgun sequence.
type: Entry
definition: Corvus cornix cornix isolate S_Up_H32 chromosome 27, ASM73873v5, whole genome shotgun sequence.
sequence version: NC_046355.1
sequence date: 2021-02-16
sequence: sequence
division: CON
label: NC_046355.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA258180
dblink: SAMN02143031
keyword: WGS
keyword: RefSeq
source: Corvus cornix cornix
organism: Corvus cornix cornix
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus.
reference: 1
references: 28360231
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM022208.2.\nAssembly name: ASM73873v5\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Uppsala University on\n2021/02/04. The original whole-genome shotgun project has the\naccession JPSR00000000.4.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Uppsala University\nAssembly Method :: FALCON-Unzip v. 0.4.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 150.0x\nSequencing Technology :: PacBio; Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Corvus cornix cornix Annotation\n Release 104\nAnnotation Version :: 104\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 4857840
topology: linear
so has quality: SO_0000987
location: 1..4857840
location: region:1-4857840:1
RO_0002162: 932674

NC_046355
type: RefSeq
SIO_000068: refseq

PRJNA258180
type: BioProject
SIO_000068: bioproject

SAMN02143031
type: BioSample
SIO_000068: biosample

1
title: Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
author: Weissensteiner, M.H.
author: Pang, A.W.C.
author: Bunikis, I.
author: Hoijer, I.
author: Vinnere-Petterson, O.
author: Suh, A.
author: Wolf, J.B.W.
journal: Genome Res.
volume: 27
issue: 5
pages: 697-708
year: 2017
pubmed: 28360231

28360231
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4857840:1
position: 4857840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4857840:1:source
so part of: sequence
organism: Corvus cornix cornix
mol type: genomic DNA
isolate: S_Up_H32
sub species: cornix
chromosome: 27
sex: male
tissue type: blood
country: Sweden: Uppsala
collection date: 2010

932674
type: Taxonomy
SIO_000068: taxonomy

PSMB3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PSMB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 1..3756
location: region:1-3756:1
so has part: feature:1-3756:1:exon
subclass of: SO_0000010

104684184
type: Gene
SIO_000068: ncbigene

position:3756:1
position: 3756
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-3756:1:exon

PSMB3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PSMB3
product: proteasome 20S subunit beta 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 mRNAs, 46 ESTs, 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565876.1
SIO_010081: PSMB3
subclass of: SO_0000673
so part of: PSMB3
location: join(1..81,365..549,887..994,1310..1487,1693..1787,3637..3756)
location: region:1-3756:1
so has part: feature:1-81:1:exon
so has part: feature:365-549:1:exon
so has part: feature:887-994:1:exon
so has part: feature:1310-1487:1:exon
so has part: feature:1693-1787:1:exon
so has part: feature:3637-3756:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1-81:1:exon

position:81:1
position: 81
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:365-549:1:exon

position:365:1
position: 365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:549:1
position: 549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:887-994:1:exon

position:887:1
position: 887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:994:1
position: 994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:1310-1487:1:exon

position:1310:1
position: 1310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1487:1
position: 1487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:1693-1787:1:exon

position:1693:1
position: 1693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1787:1
position: 1787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:3637-3756:1:exon

position:3637:1
position: 3637
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PSMB3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PSMB3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proteasome subunit beta type-3
translation: MSIMSYNGGAVMAMKGKDCVAIAADRRFGIQGQMVTTDFQKIFPMGERLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRFGPYYTEPVIAGLDPLTHEPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPDMEPEHLFETISQAMLNAVDRDAISGMGVVVHVIEKDKITTRTLKARMD
SIO_010081: PSMB3
subclass of: SO_0000673
so part of: PSMB3
location: join(79..81,365..549,887..994,1310..1487,1693..1787,3637..3685)
location: region:79-3685:1
so has part: feature:79-81:1:exon
so has part: feature:365-549:1:exon
so has part: feature:887-994:1:exon
so has part: feature:1310-1487:1:exon
so has part: feature:1693-1787:1:exon
so has part: feature:3637-3685:1:exon

XP_039421810.1
type: Protein
SIO_000068: ncbiprotein

position:79:1
position: 79
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3685:1
position: 3685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:79-81:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:365-549:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:887-994:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:1310-1487:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:1693-1787:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:3637-3685:1:exon

PIP4K2B
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PIP4K2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(4319..27099)
location: region:4319-27099:-1
so has part: feature:4319-27099:-1:exon
subclass of: SO_0000010

104684189
type: Gene
SIO_000068: ncbigene

position:4319:-1
position: 4319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27099:-1
position: 27099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4319-27099:-1:exon

PIP4K2B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PIP4K2B
product: phosphatidylinositol-5-phosphate 4-kinase type 2 beta
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_039565732.1
SIO_010081: PIP4K2B
subclass of: SO_0000673
so part of: PIP4K2B
location: complement(join(4319..8991,9871..9974,11238..11496,11759..11872,13048..13086,13386..13532,14606..14758,17283..17379,18574..18671,26904..27099))
location: region:4319-27099:-1
so has part: feature:26904-27099:-1:exon
so has part: feature:18574-18671:-1:exon
so has part: feature:17283-17379:-1:exon
so has part: feature:14606-14758:-1:exon
so has part: feature:13386-13532:-1:exon
so has part: feature:13048-13086:-1:exon
so has part: feature:11759-11872:-1:exon
so has part: feature:11238-11496:-1:exon
so has part: feature:9871-9974:-1:exon
so has part: feature:4319-8991:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:26904-27099:-1:exon

position:26904:-1
position: 26904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:18574-18671:-1:exon

position:18574:-1
position: 18574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18671:-1
position: 18671
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:17283-17379:-1:exon

position:17283:-1
position: 17283
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17379:-1
position: 17379
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:14606-14758:-1:exon

position:14606:-1
position: 14606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14758:-1
position: 14758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:13386-13532:-1:exon

position:13386:-1
position: 13386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13532:-1
position: 13532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:13048-13086:-1:exon

position:13048:-1
position: 13048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13086:-1
position: 13086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:11759-11872:-1:exon

position:11759:-1
position: 11759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11872:-1
position: 11872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:11238-11496:-1:exon

position:11238:-1
position: 11238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11496:-1
position: 11496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:9871-9974:-1:exon

position:9871:-1
position: 9871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9974:-1
position: 9974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:4319-8991:-1:exon

position:8991:-1
position: 8991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PIP4K2B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PIP4K2B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phosphatidylinositol 5-phosphate 4-kinase type-2 beta
translation: MAANCAGAAGTAAGAVAAVGSALSASKTKTKKKHFVCQKVKLFRASEPLLSVLMWGANHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPLVFRNLRERFGIDDQDYQNSVTRSAPVNSDSQGRCGARFLTTYDRRFVIKAVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVSREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEDRAEDEECENDGLGGNPISSYGTPPDSPGNLLNYPRFFGPGEFDPSVDVYAMKSHESAPRKEVYFMAIIDILTPYDTKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFNEFISNILT
SIO_010081: PIP4K2B
subclass of: SO_0000673
so part of: PIP4K2B
location: complement(join(8911..8991,9871..9974,11238..11496,11759..11872,13048..13086,13386..13532,14606..14758,17283..17379,18574..18671,26904..27083))
location: region:8911-27083:-1
so has part: feature:26904-27083:-1:exon
so has part: feature:18574-18671:-1:exon
so has part: feature:17283-17379:-1:exon
so has part: feature:14606-14758:-1:exon
so has part: feature:13386-13532:-1:exon
so has part: feature:13048-13086:-1:exon
so has part: feature:11759-11872:-1:exon
so has part: feature:11238-11496:-1:exon
so has part: feature:9871-9974:-1:exon
so has part: feature:8911-8991:-1:exon

XP_039421666.1
type: Protein
SIO_000068: ncbiprotein

position:8911:-1
position: 8911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27083:-1
position: 27083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26904-27083:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:18574-18671:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:17283-17379:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:14606-14758:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:13386-13532:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:13048-13086:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:11759-11872:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:11238-11496:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:9871-9974:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:8911-8991:-1:exon

CWC25
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CWC25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(27899..38817)
location: region:27899-38817:-1
so has part: feature:27899-38817:-1:exon
subclass of: SO_0000010

104684183
type: Gene
SIO_000068: ncbigene

position:27899:-1
position: 27899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38817:-1
position: 38817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27899-38817:-1:exon

CWC25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CWC25
product: CWC25 spliceosome associated protein homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
transcript id: XM_039565854.1
SIO_010081: CWC25
subclass of: SO_0000673
so part of: CWC25
location: complement(join(27899..28661,29338..29499,30070..30156,31289..31455,31914..31983,32199..32326,32533..32602,36760..36996,37821..37993,38726..38817))
location: region:27899-38817:-1
so has part: feature:38726-38817:-1:exon
so has part: feature:37821-37993:-1:exon
so has part: feature:36760-36996:-1:exon
so has part: feature:32533-32602:-1:exon
so has part: feature:32199-32326:-1:exon
so has part: feature:31914-31983:-1:exon
so has part: feature:31289-31455:-1:exon
so has part: feature:30070-30156:-1:exon
so has part: feature:29338-29499:-1:exon
so has part: feature:27899-28661:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38726-38817:-1:exon

position:38726:-1
position: 38726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37821-37993:-1:exon

position:37821:-1
position: 37821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37993:-1
position: 37993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:36760-36996:-1:exon

position:36760:-1
position: 36760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36996:-1
position: 36996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:32533-32602:-1:exon

position:32533:-1
position: 32533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32602:-1
position: 32602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:32199-32326:-1:exon

position:32199:-1
position: 32199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32326:-1
position: 32326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:31914-31983:-1:exon

position:31914:-1
position: 31914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31983:-1
position: 31983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:31289-31455:-1:exon

position:31289:-1
position: 31289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31455:-1
position: 31455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:30070-30156:-1:exon

position:30070:-1
position: 30070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30156:-1
position: 30156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:29338-29499:-1:exon

position:29338:-1
position: 29338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29499:-1
position: 29499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:27899-28661:-1:exon

position:28661:-1
position: 28661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CWC25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CWC25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pre-mRNA-splicing factor CWC25 homolog
translation: MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERRKIEELQRELQEERAREEMQRYAEDMGTVRKREEKLEWMYQGPGGMVNREEYLLGRPVDKFILDKVEDKEAGCSGGTGLLPGSIFARSGANSVLDMANKIREDPLFMIRKREEEKKREVLNNPVKMKKIKALLQNSLDKKEKRKKKEKKKKHKKHRRRSSSSDSSSTEEERSRNKAQKRVDNSSWKPAPSKIPGYGLQVRDSEQSHRSRSSPGQDRAPHKHRERSRSPSRSPQRHSSKRNSERGSGSPSKHSKQHSSWSEKGRARSPSPKRSYRRQHPPGYTRKISPEELERKRQEMMENAKWREEERANNLRKHRKEEELERELEKLDTRDGKFFHRLKLESASTSTLEDRVKRNIHSLQRTPAALEKNFMQR
SIO_010081: CWC25
subclass of: SO_0000673
so part of: CWC25
location: complement(join(28547..28661,29338..29499,30070..30156,31289..31455,31914..31983,32199..32326,32533..32602,36760..36996,37821..37993,38726..38743))
location: region:28547-38743:-1
so has part: feature:38726-38743:-1:exon
so has part: feature:37821-37993:-1:exon
so has part: feature:36760-36996:-1:exon
so has part: feature:32533-32602:-1:exon
so has part: feature:32199-32326:-1:exon
so has part: feature:31914-31983:-1:exon
so has part: feature:31289-31455:-1:exon
so has part: feature:30070-30156:-1:exon
so has part: feature:29338-29499:-1:exon
so has part: feature:28547-28661:-1:exon

XP_039421788.1
type: Protein
SIO_000068: ncbiprotein

position:28547:-1
position: 28547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38743:-1
position: 38743
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38726-38743:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37821-37993:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:36760-36996:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:32533-32602:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:32199-32326:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:31914-31983:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:31289-31455:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:30070-30156:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:29338-29499:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:28547-28661:-1:exon

LOC120411377
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411377
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 38844..42321
location: region:38844-42321:1
so has part: feature:38844-42321:1:exon
subclass of: SO_0000011

120411377
type: Gene
SIO_000068: ncbigene

position:38844:1
position: 38844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:42321:1
position: 42321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38844-42321:1:exon

LOC120411377
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411377
product: uncharacterized LOC120411377
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XR_005603698.1
SIO_010081: LOC120411377
subclass of: SO_0000673
so part of: LOC120411377
location: join(38844..39159,39727..42321)
location: region:38844-42321:1
so has part: feature:38844-39159:1:exon
so has part: feature:39727-42321:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38844-39159:1:exon

position:39159:1
position: 39159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:39727-42321:1:exon

position:39727:1
position: 39727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(40058..40129)
location: region:40058-40129:-1
so has part: feature:40058-40129:-1:exon
subclass of: SO_0000663

109143476
type: Gene
SIO_000068: ncbigene

position:40058:-1
position: 40058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40129:-1
position: 40129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40058-40129:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(40095..40097),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(40058..40129)
location: region:40058-40129:-1
so has part: feature:40058-40129:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40058-40129:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(40526..40597)
location: region:40526-40597:-1
so has part: feature:40526-40597:-1:exon
subclass of: SO_0000663

109143475
type: Gene
SIO_000068: ncbigene

position:40526:-1
position: 40526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40597:-1
position: 40597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40526-40597:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(40563..40565),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(40526..40597)
location: region:40526-40597:-1
so has part: feature:40526-40597:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40526-40597:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(40866..40937)
location: region:40866-40937:-1
so has part: feature:40866-40937:-1:exon
subclass of: SO_0000663

109143474
type: Gene
SIO_000068: ncbigene

position:40866:-1
position: 40866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40937:-1
position: 40937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:40866-40937:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(40903..40905),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(40866..40937)
location: region:40866-40937:-1
so has part: feature:40866-40937:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:40866-40937:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(41301..41372)
location: region:41301-41372:-1
so has part: feature:41301-41372:-1:exon
subclass of: SO_0000663

109143473
type: Gene
SIO_000068: ncbigene

position:41301:-1
position: 41301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41372:-1
position: 41372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41301-41372:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(41338..41340),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(41301..41372)
location: region:41301-41372:-1
so has part: feature:41301-41372:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41301-41372:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(41771..41842)
location: region:41771-41842:-1
so has part: feature:41771-41842:-1:exon
subclass of: SO_0000663

109143483
type: Gene
SIO_000068: ncbigene

position:41771:-1
position: 41771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41842:-1
position: 41842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:41771-41842:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(41808..41810),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(41771..41842)
location: region:41771-41842:-1
so has part: feature:41771-41842:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:41771-41842:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(42199..42270)
location: region:42199-42270:-1
so has part: feature:42199-42270:-1:exon
subclass of: SO_0000663

109143482
type: Gene
SIO_000068: ncbigene

position:42199:-1
position: 42199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42270:-1
position: 42270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42199-42270:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(42236..42238),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(42199..42270)
location: region:42199-42270:-1
so has part: feature:42199-42270:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42199-42270:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(42642..42713)
location: region:42642-42713:-1
so has part: feature:42642-42713:-1:exon
subclass of: SO_0000663

109143481
type: Gene
SIO_000068: ncbigene

position:42642:-1
position: 42642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42713:-1
position: 42713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42642-42713:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(42679..42681),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(42642..42713)
location: region:42642-42713:-1
so has part: feature:42642-42713:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42642-42713:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(43652..43723)
location: region:43652-43723:-1
so has part: feature:43652-43723:-1:exon
subclass of: SO_0000663

120411392
type: Gene
SIO_000068: ncbigene

position:43652:-1
position: 43652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:43723:-1
position: 43723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:43652-43723:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(43689..43691),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(43652..43723)
location: region:43652-43723:-1
so has part: feature:43652-43723:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:43652-43723:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(44700..44771)
location: region:44700-44771:-1
so has part: feature:44700-44771:-1:exon
subclass of: SO_0000663

109143480
type: Gene
SIO_000068: ncbigene

position:44700:-1
position: 44700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44771:-1
position: 44771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44700-44771:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(44737..44739),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(44700..44771)
location: region:44700-44771:-1
so has part: feature:44700-44771:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44700-44771:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(45044..45115)
location: region:45044-45115:-1
so has part: feature:45044-45115:-1:exon
subclass of: SO_0000663

109143472
type: Gene
SIO_000068: ncbigene

position:45044:-1
position: 45044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:45115:-1
position: 45115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45044-45115:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(45081..45083),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(45044..45115)
location: region:45044-45115:-1
so has part: feature:45044-45115:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45044-45115:-1:exon

RPL23
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RPL23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(47007..49494)
location: region:47007-49494:-1
so has part: feature:47007-49494:-1:exon
subclass of: SO_0000010

104684182
type: Gene
SIO_000068: ncbigene

position:47007:-1
position: 47007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49494:-1
position: 49494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:47007-49494:-1:exon

RPL23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RPL23
product: ribosomal protein L23
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 61 ESTs, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565872.1
SIO_010081: RPL23
subclass of: SO_0000673
so part of: RPL23
location: complement(join(47007..47158,47496..47609,48421..48549,49091..49174,49408..49494))
location: region:47007-49494:-1
so has part: feature:49408-49494:-1:exon
so has part: feature:49091-49174:-1:exon
so has part: feature:48421-48549:-1:exon
so has part: feature:47496-47609:-1:exon
so has part: feature:47007-47158:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49408-49494:-1:exon

position:49408:-1
position: 49408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:49091-49174:-1:exon

position:49091:-1
position: 49091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49174:-1
position: 49174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:48421-48549:-1:exon

position:48421:-1
position: 48421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48549:-1
position: 48549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:47496-47609:-1:exon

position:47496:-1
position: 47496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47609:-1
position: 47609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:47007-47158:-1:exon

position:47158:-1
position: 47158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPL23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RPL23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 60S ribosomal protein L23
translation: MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA
SIO_010081: RPL23
subclass of: SO_0000673
so part of: RPL23
location: complement(join(47076..47158,47496..47609,48421..48549,49091..49174,49408..49420))
location: region:47076-49420:-1
so has part: feature:49408-49420:-1:exon
so has part: feature:49091-49174:-1:exon
so has part: feature:48421-48549:-1:exon
so has part: feature:47496-47609:-1:exon
so has part: feature:47076-47158:-1:exon

XP_039421806.1
type: Protein
SIO_000068: ncbiprotein

position:47076:-1
position: 47076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49420:-1
position: 49420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49408-49420:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:49091-49174:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:48421-48549:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:47496-47609:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:47076-47158:-1:exon

LOC120411390
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411390
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: complement(48218..48351)
location: region:48218-48351:-1
so has part: feature:48218-48351:-1:exon
subclass of: SO_0000578

120411390
type: Gene
SIO_000068: ncbigene

position:48218:-1
position: 48218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48351:-1
position: 48351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48218-48351:-1:exon

LOC120411390
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: snoRNA
gene: LOC120411390
product: small nucleolar RNA SNORA21
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00412
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005603712.1
SIO_010081: LOC120411390
subclass of: SO_0000673
so part of: LOC120411390
location: complement(48218..48351)
location: region:48218-48351:-1
so has part: feature:48218-48351:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48218-48351:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(49630..49701)
location: region:49630-49701:-1
so has part: feature:49630-49701:-1:exon
subclass of: SO_0000663

120411393
type: Gene
SIO_000068: ncbigene

position:49630:-1
position: 49630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49701:-1
position: 49701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49630-49701:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(49667..49669),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(49630..49701)
location: region:49630-49701:-1
so has part: feature:49630-49701:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49630-49701:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(49876..49947)
location: region:49876-49947:-1
so has part: feature:49876-49947:-1:exon
subclass of: SO_0000663

120411394
type: Gene
SIO_000068: ncbigene

position:49876:-1
position: 49876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49947:-1
position: 49947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:49876-49947:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(49913..49915),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(49876..49947)
location: region:49876-49947:-1
so has part: feature:49876-49947:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:49876-49947:-1:exon

LASP1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LASP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 50233..81034
location: region:50233-81034:1
so has part: feature:50233-81034:1:exon
subclass of: SO_0000010

104684188
type: Gene
SIO_000068: ncbigene

position:50233:1
position: 50233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:81034:1
position: 81034
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50233-81034:1:exon

LASP1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LASP1
product: LIM and SH3 protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565744.1
SIO_010081: LASP1
subclass of: SO_0000673
so part of: LASP1
location: join(50233..50407,55158..55252,70359..70443,74767..74874,78139..78295,78790..78884,79333..81034)
location: region:50233-81034:1
so has part: feature:50233-50407:1:exon
so has part: feature:55158-55252:1:exon
so has part: feature:70359-70443:1:exon
so has part: feature:74767-74874:1:exon
so has part: feature:78139-78295:1:exon
so has part: feature:78790-78884:1:exon
so has part: feature:79333-81034:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:50233-50407:1:exon

position:50407:1
position: 50407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:55158-55252:1:exon

position:55158:1
position: 55158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:55252:1
position: 55252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:70359-70443:1:exon

position:70359:1
position: 70359
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70443:1
position: 70443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:74767-74874:1:exon

position:74767:1
position: 74767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74874:1
position: 74874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:78139-78295:1:exon

position:78139:1
position: 78139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78295:1
position: 78295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:78790-78884:1:exon

position:78790:1
position: 78790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:78884:1
position: 78884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:79333-81034:1:exon

position:79333:1
position: 79333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LASP1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LASP1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LIM and SH3 domain protein 1
translation: MNPNCARCGKIVYPTEKVNCLDKFWHKSCFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMVADTPENLRLKQQSELQSQIRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEFERSRMGPSPSEGSEPERRNSQESSSYRRGAEQQHQPLHHGQPGAPVYQQQQPPSQSYGYKEPAAPASTQRNAPAGGGKRFRAVYDYNAADEDEVSFQDGDTIINVQQIDDGWMYGTVERTGDTGMLPANYVEAI
SIO_010081: LASP1
subclass of: SO_0000673
so part of: LASP1
location: join(50339..50407,55158..55252,70359..70443,74767..74874,78139..78295,78790..78884,79333..79506)
location: region:50339-79506:1
so has part: feature:50339-50407:1:exon
so has part: feature:55158-55252:1:exon
so has part: feature:70359-70443:1:exon
so has part: feature:74767-74874:1:exon
so has part: feature:78139-78295:1:exon
so has part: feature:78790-78884:1:exon
so has part: feature:79333-79506:1:exon

XP_039421678.1
type: Protein
SIO_000068: ncbiprotein

position:50339:1
position: 50339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:79506:1
position: 79506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:50339-50407:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:55158-55252:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:70359-70443:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:74767-74874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:78139-78295:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:78790-78884:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:79333-79506:1:exon

LOC120411358
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411358
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(81081..82605)
location: region:81081-82605:-1
so has part: feature:81081-82605:-1:exon
subclass of: SO_0000011

120411358
type: Gene
SIO_000068: ncbigene

position:81081:-1
position: 81081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:82605:-1
position: 82605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81081-82605:-1:exon

LOC120411358
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411358
product: uncharacterized LOC120411358
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XR_005603690.1
SIO_010081: LOC120411358
subclass of: SO_0000673
so part of: LOC120411358
location: complement(join(81081..81501,81644..81872,82522..82605))
location: region:81081-82605:-1
so has part: feature:82522-82605:-1:exon
so has part: feature:81644-81872:-1:exon
so has part: feature:81081-81501:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:82522-82605:-1:exon

position:82522:-1
position: 82522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:81644-81872:-1:exon

position:81644:-1
position: 81644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:81872:-1
position: 81872
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:81081-81501:-1:exon

position:81501:-1
position: 81501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC120411357
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411357
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 81804..83554
location: region:81804-83554:1
so has part: feature:81804-83554:1:exon
subclass of: SO_0000011

120411357
type: Gene
SIO_000068: ncbigene

position:81804:1
position: 81804
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:83554:1
position: 83554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81804-83554:1:exon

LOC120411357
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411357
product: uncharacterized LOC120411357, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XR_005603689.1
SIO_010081: LOC120411357
subclass of: SO_0000673
so part of: LOC120411357
location: join(81804..81887,82312..82657,83157..83554)
location: region:81804-83554:1
so has part: feature:81804-81887:1:exon
so has part: feature:82312-82657:1:exon
so has part: feature:83157-83554:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:81804-81887:1:exon

position:81887:1
position: 81887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:82312-82657:1:exon

position:82312:1
position: 82312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82657:1
position: 82657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:83157-83554:1:exon

position:83157:1
position: 83157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120411357
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411357
product: uncharacterized LOC120411357, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
transcript id: XR_005603688.1
SIO_010081: LOC120411357
subclass of: SO_0000673
so part of: LOC120411357
location: join(82193..82657,83157..83554)
location: region:82193-83554:1
so has part: feature:82193-82657:1:exon
so has part: feature:83157-83554:1:exon

position:82193:1
position: 82193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:82193-82657:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:83157-83554:1:exon

FBXO47
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: FBXO47
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(86452..96057)
location: region:86452-96057:-1
so has part: feature:86452-96057:-1:exon
subclass of: SO_0000010

104684187
type: Gene
SIO_000068: ncbigene

position:86452:-1
position: 86452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96057:-1
position: 96057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:86452-96057:-1:exon

FBXO47
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXO47
product: F-box protein 47
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_010391383.3
SIO_010081: FBXO47
subclass of: SO_0000673
so part of: FBXO47
location: complement(join(86452..86877,88099..88258,88745..88887,89323..89469,90215..90391,91135..91243,92026..92103,92977..93053,95240..95410,95832..96057))
location: region:86452-96057:-1
so has part: feature:95832-96057:-1:exon
so has part: feature:95240-95410:-1:exon
so has part: feature:92977-93053:-1:exon
so has part: feature:92026-92103:-1:exon
so has part: feature:91135-91243:-1:exon
so has part: feature:90215-90391:-1:exon
so has part: feature:89323-89469:-1:exon
so has part: feature:88745-88887:-1:exon
so has part: feature:88099-88258:-1:exon
so has part: feature:86452-86877:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:95832-96057:-1:exon

position:95832:-1
position: 95832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:95240-95410:-1:exon

position:95240:-1
position: 95240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95410:-1
position: 95410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:92977-93053:-1:exon

position:92977:-1
position: 92977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:93053:-1
position: 93053
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:92026-92103:-1:exon

position:92026:-1
position: 92026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:92103:-1
position: 92103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:91135-91243:-1:exon

position:91135:-1
position: 91135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91243:-1
position: 91243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:90215-90391:-1:exon

position:90215:-1
position: 90215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:90391:-1
position: 90391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:89323-89469:-1:exon

position:89323:-1
position: 89323
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:89469:-1
position: 89469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:88745-88887:-1:exon

position:88745:-1
position: 88745
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88887:-1
position: 88887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:88099-88258:-1:exon

position:88099:-1
position: 88099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:88258:-1
position: 88258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:86452-86877:-1:exon

position:86877:-1
position: 86877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXO47
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXO47
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box only protein 47
translation: MTSSAGSSCTSTLGQKQRRSSRRSCHTPGRDCQALSALGDFQTLPLEIFQMMLNYLSVKDISMLSMVSKTISSRLINYISTSSGTRRLLLQDFHNLELPGRKEGASILEHYKSLGLLLKRCTLLLPTRERLKYVHKVLSGVSCFKLNGCASPLHCLGLQCYGVFLQILTAGWDELECHRVFNFLWELSNLARKVQTVVSSKPGSARRLELRIRLYCRGVLLSPGSHRSDSAFWLTRILKPWPMVNQARLLYIIFGPVSSLDGHVVWQKMIEGPTDETSLKGLADAIKLLYGTEAREWTADDVISLVDELSVIPQEWLMENNARLLLLSGNSICFTFLASKAVNGRAAELARLMVFMALVCEKDLYCMDWAVKMMQKVCRVFSTPWERNNFLQCLENTFAHMLMDMLQAVLAGERDEEDSSFLNLFHLVNAQASFHKEILYLAMSNNSSTT
SIO_010081: FBXO47
subclass of: SO_0000673
so part of: FBXO47
location: complement(join(86759..86877,88099..88258,88745..88887,89323..89469,90215..90391,91135..91243,92026..92103,92977..93053,95240..95410,95832..96003))
location: region:86759-96003:-1
so has part: feature:95832-96003:-1:exon
so has part: feature:95240-95410:-1:exon
so has part: feature:92977-93053:-1:exon
so has part: feature:92026-92103:-1:exon
so has part: feature:91135-91243:-1:exon
so has part: feature:90215-90391:-1:exon
so has part: feature:89323-89469:-1:exon
so has part: feature:88745-88887:-1:exon
so has part: feature:88099-88258:-1:exon
so has part: feature:86759-86877:-1:exon

XP_010389685.2
type: Protein
SIO_000068: ncbiprotein

position:86759:-1
position: 86759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96003:-1
position: 96003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:95832-96003:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:95240-95410:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:92977-93053:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:92026-92103:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:91135-91243:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:90215-90391:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:89323-89469:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:88745-88887:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:88099-88258:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:86759-86877:-1:exon

PLXDC1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PLXDC1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(107944..132335)
location: region:107944-132335:-1
so has part: feature:107944-132335:-1:exon
subclass of: SO_0000010

104684186
type: Gene
SIO_000068: ncbigene

position:107944:-1
position: 107944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132335:-1
position: 132335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:107944-132335:-1:exon

PLXDC1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PLXDC1
product: plexin domain containing 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns
transcript id: XM_039565823.1
SIO_010081: PLXDC1
subclass of: SO_0000673
so part of: PLXDC1
location: complement(join(107944..111198,114141..114304,115951..115986,118589..118725,120622..120679,122688..122769,125014..125109,126398..126497,126644..126762,127026..127148,127707..127776,128000..128143,130698..130822,132162..132335))
location: region:107944-132335:-1
so has part: feature:132162-132335:-1:exon
so has part: feature:130698-130822:-1:exon
so has part: feature:128000-128143:-1:exon
so has part: feature:127707-127776:-1:exon
so has part: feature:127026-127148:-1:exon
so has part: feature:126644-126762:-1:exon
so has part: feature:126398-126497:-1:exon
so has part: feature:125014-125109:-1:exon
so has part: feature:122688-122769:-1:exon
so has part: feature:120622-120679:-1:exon
so has part: feature:118589-118725:-1:exon
so has part: feature:115951-115986:-1:exon
so has part: feature:114141-114304:-1:exon
so has part: feature:107944-111198:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:132162-132335:-1:exon

position:132162:-1
position: 132162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:130698-130822:-1:exon

position:130698:-1
position: 130698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130822:-1
position: 130822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:128000-128143:-1:exon

position:128000:-1
position: 128000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128143:-1
position: 128143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:127707-127776:-1:exon

position:127707:-1
position: 127707
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127776:-1
position: 127776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:127026-127148:-1:exon

position:127026:-1
position: 127026
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:127148:-1
position: 127148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:126644-126762:-1:exon

position:126644:-1
position: 126644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126762:-1
position: 126762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:126398-126497:-1:exon

position:126398:-1
position: 126398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:126497:-1
position: 126497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:125014-125109:-1:exon

position:125014:-1
position: 125014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125109:-1
position: 125109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:122688-122769:-1:exon

position:122688:-1
position: 122688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:122769:-1
position: 122769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:120622-120679:-1:exon

position:120622:-1
position: 120622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:120679:-1
position: 120679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:118589-118725:-1:exon

position:118589:-1
position: 118589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:118725:-1
position: 118725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:115951-115986:-1:exon

position:115951:-1
position: 115951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:115986:-1
position: 115986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:114141-114304:-1:exon

position:114141:-1
position: 114141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:114304:-1
position: 114304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:107944-111198:-1:exon

position:111198:-1
position: 111198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PLXDC1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PLXDC1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: plexin domain-containing protein 1
translation: MRWGGLLLLCLLRGALGAGRPPGSEGRRARDTSEGTRISQDLVGGSLAIDTLPANETRIVEDNHSYYVSRIYGPGDARRRGLWVDMAAANRSQVKIHGILSNTHRQASRIVLSFDFPFYGHLLRQVTIATGGFIFMGDVIHRMLTATQYIAPLMANFNPSYSRNSTVQYLDNGTVFVVQWDKVYLQGKEDMGSFTFQAALHSSGRIVFGYKEIPVPVLQISASQHPVKAGLSDAFMVLNPSPDVPESRRRTIYEYHRVELDTSRISSRSAVEFTPLPTCLQHQSCEMCVTSELTFNCSWCHVLQRCSSGFDRYREEWLSYGCGQPDEKTCEDLAEGGRYSAPPDSSASPQAQDGTSPTASLFIDSLTTEDDTKLNQFAGGEGVGSSSLPSQSSGAPMPTGTIVGIVVAVLLLAGIILAGIYISGHPTSTAALFFIERRPHRWPAMKFRNRSNHASYAEVEAANQEKEGFVEAEQC
SIO_010081: PLXDC1
subclass of: SO_0000673
so part of: PLXDC1
location: complement(join(111079..111198,114141..114304,115951..115986,118589..118725,120622..120679,122688..122769,125014..125109,126398..126497,126644..126762,127026..127148,127707..127776,128000..128143,130698..130822,132162..132216))
location: region:111079-132216:-1
so has part: feature:132162-132216:-1:exon
so has part: feature:130698-130822:-1:exon
so has part: feature:128000-128143:-1:exon
so has part: feature:127707-127776:-1:exon
so has part: feature:127026-127148:-1:exon
so has part: feature:126644-126762:-1:exon
so has part: feature:126398-126497:-1:exon
so has part: feature:125014-125109:-1:exon
so has part: feature:122688-122769:-1:exon
so has part: feature:120622-120679:-1:exon
so has part: feature:118589-118725:-1:exon
so has part: feature:115951-115986:-1:exon
so has part: feature:114141-114304:-1:exon
so has part: feature:111079-111198:-1:exon

XP_039421757.1
type: Protein
SIO_000068: ncbiprotein

position:111079:-1
position: 111079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:132216:-1
position: 132216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:132162-132216:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:130698-130822:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:128000-128143:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:127707-127776:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:127026-127148:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:126644-126762:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:126398-126497:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:125014-125109:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:122688-122769:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:120622-120679:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:118589-118725:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:115951-115986:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:114141-114304:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:111079-111198:-1:exon

TRNAC-GCA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAC-GCA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: complement(133530..133601)
location: region:133530-133601:-1
so has part: feature:133530-133601:-1:exon
subclass of: SO_0000663

120411395
type: Gene
SIO_000068: ncbigene

position:133530:-1
position: 133530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133601:-1
position: 133601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:133530-133601:-1:exon

TRNAC-GCA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAC-GCA
product: tRNA-Cys
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(133567..133569),aa:Cys,seq:gca)
SIO_010081: TRNAC-GCA
subclass of: SO_0000673
so part of: TRNAC-GCA
location: complement(133530..133601)
location: region:133530-133601:-1
so has part: feature:133530-133601:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:133530-133601:-1:exon

LOC120411363
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411363
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 136072..138780
location: region:136072-138780:1
so has part: feature:136072-138780:1:exon
subclass of: SO_0000010

120411363
type: Gene
SIO_000068: ncbigene

position:136072:1
position: 136072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138780:1
position: 138780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136072-138780:1:exon

LOC120411363
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC120411363
product: dickkopf-related protein 3-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 85% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565777.1
SIO_010081: LOC120411363
subclass of: SO_0000673
so part of: LOC120411363
location: join(136072..136143,137820..137997,138154..138347,138472..138780)
location: region:136072-138780:1
so has part: feature:136072-136143:1:exon
so has part: feature:137820-137997:1:exon
so has part: feature:138154-138347:1:exon
so has part: feature:138472-138780:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136072-136143:1:exon

position:136143:1
position: 136143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:137820-137997:1:exon

position:137820:1
position: 137820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137997:1
position: 137997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:138154-138347:1:exon

position:138154:1
position: 138154
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:138347:1
position: 138347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:138472-138780:1:exon

position:138472:1
position: 138472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120411363
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC120411363
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: dickkopf-related protein 3-like
translation: MFSLPPHSPDAAALSRSPGTDLEEVTPCSPATPCAHGHFCDEHFGLCLPTRPAGQFCRHDPHCTSGLVCMFGKCQQPVPPGQDGARCQRDEECGAGGCCARQHGERVCQRRLALAQSCHVPPXGLAFSINQVCPCQPGLVCRPSAPAREKAFEYRPEKSDWRCRQP
SIO_010081: LOC120411363
subclass of: SO_0000673
so part of: LOC120411363
location: join(136072..136143,137820..137997,138154..138347,138472..138526)
location: region:136072-138526:1
so has part: feature:136072-136143:1:exon
so has part: feature:137820-137997:1:exon
so has part: feature:138154-138347:1:exon
so has part: feature:138472-138526:1:exon

XP_039421711.1
type: Protein
SIO_000068: ncbiprotein

position:138526:1
position: 138526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:136072-136143:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:137820-137997:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:138154-138347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:138472-138526:1:exon

TRNAI-UAU
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRNAI-UAU
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 137427..137516
location: region:137427-137516:1
so has part: feature:137427-137516:1:exon
subclass of: SO_0000663

120411391
type: Gene
SIO_000068: ncbigene

position:137427:1
position: 137427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:137516:1
position: 137516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:137427-137516:1:exon

TRNAI-UAU
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
gene: TRNAI-UAU
product: tRNA-Ile
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA isoleucine (anticodon UAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:137461..137463,aa:Ile,seq:tat)
SIO_010081: TRNAI-UAU
subclass of: SO_0000673
so part of: TRNAI-UAU
location: join(137427..137464,137481..137516)
location: region:137427-137516:1
so has part: feature:137427-137464:1:exon
so has part: feature:137481-137516:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:137427-137464:1:exon

position:137464:1
position: 137464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:137481-137516:1:exon

position:137481:1
position: 137481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CACNB1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CACNB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(138871..152120)
location: region:138871-152120:-1
so has part: feature:138871-152120:-1:exon
subclass of: SO_0000010

120411371
type: Gene
SIO_000068: ncbigene

position:138871:-1
position: 138871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:152120:-1
position: 152120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:138871-152120:-1:exon

CACNB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CACNB1
product: calcium voltage-gated channel auxiliary subunit beta 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 30 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565822.1
SIO_010081: CACNB1
subclass of: SO_0000673
so part of: CACNB1
location: complement(join(138871..140661,141952..142156,142605..142700,142822..142973,143691..143800,144582..144640,144739..144819,144996..145015,147458..147534,147635..147771,147866..147988,148527..148646,149974..150060,151337..152120))
location: region:138871-152120:-1
so has part: feature:151337-152120:-1:exon
so has part: feature:149974-150060:-1:exon
so has part: feature:148527-148646:-1:exon
so has part: feature:147866-147988:-1:exon
so has part: feature:147635-147771:-1:exon
so has part: feature:147458-147534:-1:exon
so has part: feature:144996-145015:-1:exon
so has part: feature:144739-144819:-1:exon
so has part: feature:144582-144640:-1:exon
so has part: feature:143691-143800:-1:exon
so has part: feature:142822-142973:-1:exon
so has part: feature:142605-142700:-1:exon
so has part: feature:141952-142156:-1:exon
so has part: feature:138871-140661:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151337-152120:-1:exon

position:151337:-1
position: 151337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:149974-150060:-1:exon

position:149974:-1
position: 149974
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:150060:-1
position: 150060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:148527-148646:-1:exon

position:148527:-1
position: 148527
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:148646:-1
position: 148646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:147866-147988:-1:exon

position:147866:-1
position: 147866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147988:-1
position: 147988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:147635-147771:-1:exon

position:147635:-1
position: 147635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147771:-1
position: 147771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:147458-147534:-1:exon

position:147458:-1
position: 147458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:147534:-1
position: 147534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:144996-145015:-1:exon

position:144996:-1
position: 144996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:145015:-1
position: 145015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:144739-144819:-1:exon

position:144739:-1
position: 144739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144819:-1
position: 144819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:144582-144640:-1:exon

position:144582:-1
position: 144582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:144640:-1
position: 144640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:143691-143800:-1:exon

position:143691:-1
position: 143691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143800:-1
position: 143800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:142822-142973:-1:exon

position:142822:-1
position: 142822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142973:-1
position: 142973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:142605-142700:-1:exon

position:142605:-1
position: 142605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142700:-1
position: 142700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:141952-142156:-1:exon

position:141952:-1
position: 141952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:142156:-1
position: 142156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:138871-140661:-1:exon

position:140661:-1
position: 140661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CACNB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CACNB1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: voltage-dependent L-type calcium channel subunit beta-1
translation: MVREGGMARTPYSSTQDIQMDVLDNAALQGKYSRRKSRFKRSDGSTSSDTTSNSFVRQGSAESYTSRPSDSDVSLEEDREALRKEAERQAMAQLEKAKTKPVAFAVRTNVGYNPSATDDVPVQGMAICFEPKDFLHIKEKYNNDWWIGRLVKEGCEVGFIPSPVKLENMRLLQEQKMRQNRLSSSKSGDNSSSSLGDVVTGTRRPTPPASAKQKQKSTEHVPPYDVVPSMRPIILVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKHTIIERSSTRSSLAEVQSETERIFELARTLQLVALDADTINHPAQLAKTSLAPIIVYIKITSPKVLQRLVKSRGKSQAKHLNVQMVASDKLAQCPPEMFDIVLDENQLEEACEHLAEYLEAYWKATHPPSSNPPNPLLNRTMATAALAASPAPAPTPGTGAHLPHGRLRQGPGDSGGRGQGRPPRRTRPGPRSLSRQDTFDSEPPGSRDSAGTEPGDSCCMDIEMDPVEEEPPGPPGAGPHPPPGAWDGAEPGREGRGLRGRAKGQEPLGQSDGEGWGQDVYMR
SIO_010081: CACNB1
subclass of: SO_0000673
so part of: CACNB1
location: complement(join(140297..140661,141952..142156,142605..142700,142822..142973,143691..143800,144582..144640,144739..144819,144996..145015,147458..147534,147635..147771,147866..147988,148527..148646,149974..150060,151337..151423))
location: region:140297-151423:-1
so has part: feature:151337-151423:-1:exon
so has part: feature:149974-150060:-1:exon
so has part: feature:148527-148646:-1:exon
so has part: feature:147866-147988:-1:exon
so has part: feature:147635-147771:-1:exon
so has part: feature:147458-147534:-1:exon
so has part: feature:144996-145015:-1:exon
so has part: feature:144739-144819:-1:exon
so has part: feature:144582-144640:-1:exon
so has part: feature:143691-143800:-1:exon
so has part: feature:142822-142973:-1:exon
so has part: feature:142605-142700:-1:exon
so has part: feature:141952-142156:-1:exon
so has part: feature:140297-140661:-1:exon

XP_039421756.1
type: Protein
SIO_000068: ncbiprotein

position:140297:-1
position: 140297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:151423:-1
position: 151423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151337-151423:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:149974-150060:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:148527-148646:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:147866-147988:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:147635-147771:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:147458-147534:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:144996-145015:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144739-144819:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:144582-144640:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:143691-143800:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:142822-142973:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:142605-142700:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:141952-142156:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:140297-140661:-1:exon

RPL19
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RPL19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 154598..157331
location: region:154598-157331:1
so has part: feature:154598-157331:1:exon
subclass of: SO_0000010

120411372
type: Gene
SIO_000068: ncbigene

position:154598:1
position: 154598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157331:1
position: 157331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154598-157331:1:exon

RPL19
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RPL19
product: ribosomal protein L19
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 20 ESTs, 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565831.1
SIO_010081: RPL19
subclass of: SO_0000673
so part of: RPL19
location: join(154598..154656,155408..155514,155949..156071,156305..156425,156524..156634,157141..157331)
location: region:154598-157331:1
so has part: feature:154598-154656:1:exon
so has part: feature:155408-155514:1:exon
so has part: feature:155949-156071:1:exon
so has part: feature:156305-156425:1:exon
so has part: feature:156524-156634:1:exon
so has part: feature:157141-157331:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:154598-154656:1:exon

position:154656:1
position: 154656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:155408-155514:1:exon

position:155408:1
position: 155408
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155514:1
position: 155514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:155949-156071:1:exon

position:155949:1
position: 155949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156071:1
position: 156071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:156305-156425:1:exon

position:156305:1
position: 156305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156425:1
position: 156425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:156524-156634:1:exon

position:156524:1
position: 156524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156634:1
position: 156634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:157141-157331:1:exon

position:157141:1
position: 157141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RPL19
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RPL19
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 60S ribosomal protein L19
translation: MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEEAKK
SIO_010081: RPL19
subclass of: SO_0000673
so part of: RPL19
location: join(154652..154656,155408..155514,155949..156071,156305..156425,156524..156634,157141..157264)
location: region:154652-157264:1
so has part: feature:154652-154656:1:exon
so has part: feature:155408-155514:1:exon
so has part: feature:155949-156071:1:exon
so has part: feature:156305-156425:1:exon
so has part: feature:156524-156634:1:exon
so has part: feature:157141-157264:1:exon

XP_039421765.1
type: Protein
SIO_000068: ncbiprotein

position:154652:1
position: 154652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157264:1
position: 157264
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154652-154656:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:155408-155514:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:155949-156071:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:156305-156425:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:156524-156634:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:157141-157264:1:exon

LOC120411373
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411373
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 157714..165558
location: region:157714-165558:1
so has part: feature:157714-165558:1:exon
subclass of: SO_0000010

120411373
type: Gene
SIO_000068: ncbigene

position:157714:1
position: 157714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:165558:1
position: 165558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:157714-165558:1:exon

LOC120411373
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC120411373
product: transcription factor CP2-like protein 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 10 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565832.1
SIO_010081: LOC120411373
subclass of: SO_0000673
so part of: LOC120411373
location: join(157714..158415,158506..158657,158733..158803,159134..159239,159306..159412,159511..159663,159850..159960,160039..160136,160204..160258,160368..160461,160535..160625,160732..160808,160940..161085,161210..161261,161338..165558)
location: region:157714-165558:1
so has part: feature:157714-158415:1:exon
so has part: feature:158506-158657:1:exon
so has part: feature:158733-158803:1:exon
so has part: feature:159134-159239:1:exon
so has part: feature:159306-159412:1:exon
so has part: feature:159511-159663:1:exon
so has part: feature:159850-159960:1:exon
so has part: feature:160039-160136:1:exon
so has part: feature:160204-160258:1:exon
so has part: feature:160368-160461:1:exon
so has part: feature:160535-160625:1:exon
so has part: feature:160732-160808:1:exon
so has part: feature:160940-161085:1:exon
so has part: feature:161210-161261:1:exon
so has part: feature:161338-165558:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:157714-158415:1:exon

position:158415:1
position: 158415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:158506-158657:1:exon

position:158506:1
position: 158506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:158657:1
position: 158657
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:158733-158803:1:exon

position:158733:1
position: 158733
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:158803:1
position: 158803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:159134-159239:1:exon

position:159134:1
position: 159134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159239:1
position: 159239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:159306-159412:1:exon

position:159306:1
position: 159306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159412:1
position: 159412
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:159511-159663:1:exon

position:159511:1
position: 159511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159663:1
position: 159663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:159850-159960:1:exon

position:159850:1
position: 159850
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:159960:1
position: 159960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:160039-160136:1:exon

position:160039:1
position: 160039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160136:1
position: 160136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:160204-160258:1:exon

position:160204:1
position: 160204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160258:1
position: 160258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:160368-160461:1:exon

position:160368:1
position: 160368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160461:1
position: 160461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:160535-160625:1:exon

position:160535:1
position: 160535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160625:1
position: 160625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:160732-160808:1:exon

position:160732:1
position: 160732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:160808:1
position: 160808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:160940-161085:1:exon

position:160940:1
position: 160940
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161085:1
position: 161085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:161210-161261:1:exon

position:161210:1
position: 161210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161261:1
position: 161261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:161338-165558:1:exon

position:161338:1
position: 161338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120411373
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC120411373
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transcription factor CP2-like protein 1
translation: MLFWHGQPDHYWSSPGDMYPLPSSGVLRDPPVLPYLKQEEPNGISTSQPPVPAFQYVLCAPTSPAVRHHEETLTYLNQGQSYEIRMMGTPRGDPAEGRRMVKSVVRVVFHDRRLQYSEQQQLEGWRWSRPGDRILDIDIPVSVGILEPQIHPTLLNTVEFLWDPCRRTSVFVQVHCISTEFTLRKNGGEKGVPFRIQIDTFGAGGKGDPPEHLHSASCLVKVFKPKGADRKQKTDREKVEKQPAPEREKFQPAYESTVLAECPPWPDALGAPHSPPGTPGLPSPHPFKLLSPERVCVSPACAAEGPAESPGEALSPCASPLETQQWLLRRRFSACARVFANFSGADLLKLSRRDLIQICGAPDGIRLCHALAGRCPRPRLTLYVAREPGGAEGAEDAGPGLYQELHLEQLTVAELTAKLAELLGLPPGQILRLSRQGPAGIHVLVSDAMIRNLQDETSFVVAIAKAPGPEGFQLLLR
SIO_010081: LOC120411373
subclass of: SO_0000673
so part of: LOC120411373
location: join(158333..158415,158506..158657,158733..158803,159134..159239,159306..159412,159511..159663,159850..159960,160039..160136,160204..160258,160368..160461,160535..160625,160732..160808,160940..161085,161210..161261,161338..161375)
location: region:158333-161375:1
so has part: feature:158333-158415:1:exon
so has part: feature:158506-158657:1:exon
so has part: feature:158733-158803:1:exon
so has part: feature:159134-159239:1:exon
so has part: feature:159306-159412:1:exon
so has part: feature:159511-159663:1:exon
so has part: feature:159850-159960:1:exon
so has part: feature:160039-160136:1:exon
so has part: feature:160204-160258:1:exon
so has part: feature:160368-160461:1:exon
so has part: feature:160535-160625:1:exon
so has part: feature:160732-160808:1:exon
so has part: feature:160940-161085:1:exon
so has part: feature:161210-161261:1:exon
so has part: feature:161338-161375:1:exon

XP_039421766.1
type: Protein
SIO_000068: ncbiprotein

position:158333:1
position: 158333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:161375:1
position: 161375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158333-158415:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:158506-158657:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:158733-158803:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:159134-159239:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:159306-159412:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:159511-159663:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:159850-159960:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:160039-160136:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:160204-160258:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:160368-160461:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:160535-160625:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:160732-160808:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:160940-161085:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:161210-161261:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:161338-161375:1:exon

FBXL20
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(165683..204266)
location: region:165683-204266:-1
so has part: feature:165683-204266:-1:exon
subclass of: SO_0000010

120411316
type: Gene
SIO_000068: ncbigene

position:165683:-1
position: 165683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:204266:-1
position: 204266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:165683-204266:-1:exon

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 37 samples with support for all annotated introns
transcript id: XM_039565597.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(165683..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,204131..204266))
location: region:165683-204266:-1
so has part: feature:204131-204266:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:165683-166590:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:204131-204266:-1:exon

position:204131:-1
position: 204131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

position:190097:-1
position: 190097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:190158:-1
position: 190158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

position:181112:-1
position: 181112
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181166:-1
position: 181166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

position:179162:-1
position: 179162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179236:-1
position: 179236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

position:176916:-1
position: 176916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177010:-1
position: 177010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

position:175919:-1
position: 175919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:175987:-1
position: 175987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

position:175454:-1
position: 175454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:175549:-1
position: 175549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

position:175090:-1
position: 175090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:175216:-1
position: 175216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

position:174216:-1
position: 174216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:174290:-1
position: 174290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

position:173048:-1
position: 173048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173178:-1
position: 173178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

position:170494:-1
position: 170494
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170554:-1
position: 170554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

position:169579:-1
position: 169579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:169623:-1
position: 169623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

position:168513:-1
position: 168513
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168569:-1
position: 168569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

position:167269:-1
position: 167269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:167481:-1
position: 167481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:165683-166590:-1:exon

position:166590:-1
position: 166590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
transcript id: XM_039565596.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(165683..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,203481..203584))
location: region:165683-203584:-1
so has part: feature:203481-203584:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:165683-166590:-1:exon

position:203584:-1
position: 203584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203481-203584:-1:exon

position:203481:-1
position: 203481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165683-166590:-1:exon

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_039565594.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(165683..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,202369..202599))
location: region:165683-202599:-1
so has part: feature:202369-202599:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:165683-166590:-1:exon

position:202599:-1
position: 202599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202369-202599:-1:exon

position:202369:-1
position: 202369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165683-166590:-1:exon

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
transcript id: XM_039565598.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(165683..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,196524..196627))
location: region:165683-196627:-1
so has part: feature:196524-196627:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:165683-166590:-1:exon

position:196627:-1
position: 196627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:196524-196627:-1:exon

position:196524:-1
position: 196524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165683-166590:-1:exon

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_039565599.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(165683..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,188545..188667,190097..190158))
location: region:165683-190158:-1
so has part: feature:190097-190158:-1:exon
so has part: feature:188545-188667:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:165683-166590:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:188545-188667:-1:exon

position:188545:-1
position: 188545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188667:-1
position: 188667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:165683-166590:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X4
translation: MGAAACGMFSNNDEAAINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(166483..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,204131..204151))
location: region:166483-204151:-1
so has part: feature:204131-204151:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:166483-166590:-1:exon

XP_039421531.1
type: Protein
SIO_000068: ncbiprotein

position:166483:-1
position: 166483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:204151:-1
position: 204151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204131-204151:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:166483-166590:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X3
translation: MRREMNGVTKSRFEMFSNNDEAAINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(166483..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,203481..203522))
location: region:166483-203522:-1
so has part: feature:203481-203522:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:166483-166590:-1:exon

XP_039421530.1
type: Protein
SIO_000068: ncbiprotein

position:203522:-1
position: 203522
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:203481-203522:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:166483-166590:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X1
translation: MAQSGVWSQGDSSRIVVPAVFPGEEEEEGGREEGQQQDLLPIAPRGRGGWKSLPAPSPDCPARVGDKKEPGMMFSNNDEAAINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(166483..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,202369..202584))
location: region:166483-202584:-1
so has part: feature:202369-202584:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:166483-166590:-1:exon

XP_039421528.1
type: Protein
SIO_000068: ncbiprotein

position:202584:-1
position: 202584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202369-202584:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:166483-166590:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X5
translation: MFSNNDEAAINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(166483..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158))
location: region:166483-190158:-1
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:166483-166590:-1:exon

XP_039421532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166483-166590:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X6
translation: MSPGPTGFADLVALIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDRLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(166483..166590,167269..167481,168513..168569,169579..169623,170494..170554,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,188545..188585))
location: region:166483-188585:-1
so has part: feature:188545-188585:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:170494-170554:-1:exon
so has part: feature:169579-169623:-1:exon
so has part: feature:168513-168569:-1:exon
so has part: feature:167269-167481:-1:exon
so has part: feature:166483-166590:-1:exon

XP_039421533.1
type: Protein
SIO_000068: ncbiprotein

position:188585:-1
position: 188585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188545-188585:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:170494-170554:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:169579-169623:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:168513-168569:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:167269-167481:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:166483-166590:-1:exon

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_039565600.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(171158..172243,172368..172455,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,202369..202599))
location: region:171158-202599:-1
so has part: feature:202369-202599:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:172368-172455:-1:exon
so has part: feature:171158-172243:-1:exon

position:171158:-1
position: 171158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202369-202599:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172368-172455:-1:exon

position:172368:-1
position: 172368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172455:-1
position: 172455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:171158-172243:-1:exon

position:172243:-1
position: 172243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

FBXL20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: FBXL20
product: F-box and leucine rich repeat protein 20, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_039565595.1
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(171158..172455,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,202369..202599))
location: region:171158-202599:-1
so has part: feature:202369-202599:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:171158-172455:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:202369-202599:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:171158-172455:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X2
translation: MAQSGVWSQGDSSRIVVPAVFPGEEEEEGGREEGQQQDLLPIAPRGRGGWKSLPAPSPDCPARVGDKKEPGMMFSNNDEAAINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLREKQPPAVPWDVPFKEFGYKVHRKQCGKRKVKSKIDSGGSCVYVQPQRIKLHPVEYKRHFGNMAFFFSSYKGRKIGSNCGGNPCGAAGGARKFLCSHRNEQFTLKGFNLLPWGLKY
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(172107..172455,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,202369..202584))
location: region:172107-202584:-1
so has part: feature:202369-202584:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:172107-172455:-1:exon

XP_039421529.1
type: Protein
SIO_000068: ncbiprotein

position:172107:-1
position: 172107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202369-202584:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172107-172455:-1:exon

FBXL20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: FBXL20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: F-box/LRR-repeat protein 20 isoform X7
translation: MAQSGVWSQGDSSRIVVPAVFPGEEEEEGGREEGQQQDLLPIAPRGRGGWKSLPAPSPDCPARVGDKKEPGMMFSNNDEAAINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKITDTTCTSLSKFCSKLRHLDLASCTSITNLSLKALSEGCPLLEQLIISWCDQVTKDGIQALVRGCGGLRALSLKGCTQLEDEALKFIGAHCPELVTLNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLREKQPPAVPWDVPFKEFGYKVHRKQCGKRKAEKSVQTVEGIPVELQEVPGSFSAPTGMSSSP
SIO_010081: FBXL20
subclass of: SO_0000673
so part of: FBXL20
location: complement(join(172145..172243,172368..172455,173048..173178,174216..174290,175090..175216,175454..175549,175919..175987,176916..177010,179162..179236,181112..181166,190097..190158,202369..202584))
location: region:172145-202584:-1
so has part: feature:202369-202584:-1:exon
so has part: feature:190097-190158:-1:exon
so has part: feature:181112-181166:-1:exon
so has part: feature:179162-179236:-1:exon
so has part: feature:176916-177010:-1:exon
so has part: feature:175919-175987:-1:exon
so has part: feature:175454-175549:-1:exon
so has part: feature:175090-175216:-1:exon
so has part: feature:174216-174290:-1:exon
so has part: feature:173048-173178:-1:exon
so has part: feature:172368-172455:-1:exon
so has part: feature:172145-172243:-1:exon

XP_039421534.1
type: Protein
SIO_000068: ncbiprotein

position:172145:-1
position: 172145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202369-202584:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:190097-190158:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:181112-181166:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:179162-179236:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176916-177010:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:175919-175987:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175454-175549:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175090-175216:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174216-174290:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173048-173178:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172368-172455:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:172145-172243:-1:exon

LOC120411317
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411317
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 188301..189308
location: region:188301-189308:1
so has part: feature:188301-189308:1:exon
subclass of: SO_0000010

120411317
type: Gene
SIO_000068: ncbigene

position:188301:1
position: 188301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:189308:1
position: 189308
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188301-189308:1:exon

LOC120411317
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC120411317
product: E3 ubiquitin-protein ligase RNF113A-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 60% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565602.1
SIO_010081: LOC120411317
subclass of: SO_0000673
so part of: LOC120411317
location: 188301..189308
location: region:188301-189308:1
so has part: feature:188301-189308:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:188301-189308:1:exon

LOC120411317
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC120411317
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF113A-like
translation: MAEESGACSSVLKKRVRAAGRGRQKRPGSDQERESSGEEGSTEVRNERRRDTANPMIRKRERPEYAPSSSEDPAKEMGVTYKATRSAKPVGPGDMGATAVYELDTEKDAQAIFERSQKIQEELREKEDDKIYRGINNYQKYVKPKDTSMGNASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETRFCGFGDSCKFLHDRSDYKHGWQMEQELDKGCYAFNDDKNYEVSSDEEDVPLKCFICRGSFRNPVVTKCRRYSCESCALRRYRKSQRCCVCDKQTNGVFNPAKELTAKLEKHKGEEEEEQQPDRGEDPQ
SIO_010081: LOC120411317
subclass of: SO_0000673
so part of: LOC120411317
location: 188301..189252
location: region:188301-189252:1
so has part: feature:188301-189252:1:exon

XP_039421536.1
type: Protein
SIO_000068: ncbiprotein

position:189252:1
position: 189252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:188301-189252:1:exon

MED1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: MED1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(204479..221400)
location: region:204479-221400:-1
so has part: feature:204479-221400:-1:exon
subclass of: SO_0000010

120411315
type: Gene
SIO_000068: ncbigene

position:204479:-1
position: 204479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221400:-1
position: 221400
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:204479-221400:-1:exon

MED1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: MED1
product: mediator complex subunit 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 ESTs, 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 77 samples with support for all annotated introns
transcript id: XM_039565593.1
SIO_010081: MED1
subclass of: SO_0000673
so part of: MED1
location: complement(join(204479..210324,211429..211534,211645..211740,211914..212115,212874..212992,213208..213332,213586..213697,214682..214771,214973..215046,215434..215508,215688..215759,216124..216152,216877..217009,217773..217827,218420..218498,219182..219288,221275..221400))
location: region:204479-221400:-1
so has part: feature:221275-221400:-1:exon
so has part: feature:219182-219288:-1:exon
so has part: feature:218420-218498:-1:exon
so has part: feature:217773-217827:-1:exon
so has part: feature:216877-217009:-1:exon
so has part: feature:216124-216152:-1:exon
so has part: feature:215688-215759:-1:exon
so has part: feature:215434-215508:-1:exon
so has part: feature:214973-215046:-1:exon
so has part: feature:214682-214771:-1:exon
so has part: feature:213586-213697:-1:exon
so has part: feature:213208-213332:-1:exon
so has part: feature:212874-212992:-1:exon
so has part: feature:211914-212115:-1:exon
so has part: feature:211645-211740:-1:exon
so has part: feature:211429-211534:-1:exon
so has part: feature:204479-210324:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:221275-221400:-1:exon

position:221275:-1
position: 221275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:219182-219288:-1:exon

position:219182:-1
position: 219182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219288:-1
position: 219288
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:218420-218498:-1:exon

position:218420:-1
position: 218420
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218498:-1
position: 218498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:217773-217827:-1:exon

position:217773:-1
position: 217773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217827:-1
position: 217827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:216877-217009:-1:exon

position:216877:-1
position: 216877
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217009:-1
position: 217009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:216124-216152:-1:exon

position:216124:-1
position: 216124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216152:-1
position: 216152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:215688-215759:-1:exon

position:215688:-1
position: 215688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215759:-1
position: 215759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:215434-215508:-1:exon

position:215434:-1
position: 215434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215508:-1
position: 215508
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:214973-215046:-1:exon

position:214973:-1
position: 214973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215046:-1
position: 215046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:214682-214771:-1:exon

position:214682:-1
position: 214682
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:214771:-1
position: 214771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:213586-213697:-1:exon

position:213586:-1
position: 213586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213697:-1
position: 213697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:213208-213332:-1:exon

position:213208:-1
position: 213208
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:213332:-1
position: 213332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:212874-212992:-1:exon

position:212874:-1
position: 212874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:212992:-1
position: 212992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:211914-212115:-1:exon

position:211914:-1
position: 211914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:212115:-1
position: 212115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:211645-211740:-1:exon

position:211645:-1
position: 211645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:211740:-1
position: 211740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:211429-211534:-1:exon

position:211429:-1
position: 211429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:211534:-1
position: 211534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:204479-210324:-1:exon

position:210324:-1
position: 210324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MED1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: MED1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 1
translation: MKAAPGSAEEAEKLNKMSSLLERLHAKYSQNRPWTETMKLVRQVMEKRVVLNSGGHQHLVSCLETLQKALKVSSLPAMTDRLESIARQSGLGSHLSANGTECYITSDMFYVEVQLDPTGLLCDVKVAHHGENPVSCPELVQHLREKNFDEFSKHLRGLVNLYKLPGDNKLKTKMYLALQSLELDLQKMAGMYWQATNANPLDKILHGSVGYLTPRSGGLLMNLKYYVSPYDLFEDGTGAPVVLHENNVPRSLGMNVSVTVEGTMAMHKLPIAPLIMGSHPVDSKGTPSFSSITSANSVDLPACFFLKFPRPIPVSRAFIQKLQSCTGIPLFDTSPTFVPLYELITQFELSKEADPLPLNHNMRFYAALPGQQHCYFLNKDAPLPDGRSLQGTLISKIAFQHPGRVPLILNLIRHQVAYNTLIGSCVKRTVLKEDSPGILQFEVCPLSDSCFSVSFQHPVNDSLVCVVMDVQDSTHVNCKLYKGLSDALICTDDFIAKVVQRCMSIPVTMRAIRRKAETIQADTPALSLIAETVEDMVKKNLPPASSPGYGMTTGSNPMSGTTTPTNTFPGGPITTLFNMSISMKERHDSVGHGEDFSKVSQNPILTSLLQITGNVGSTIGSSPTPPHHTPPPVSSPASNTKNHPMLMNLLKENPPQDFSTLYGSSPLERQNSSSGSPRMEMGPGGNKQKKKKSRMPADKPKHQTEDDFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYPQALPHAQPSIQRMVRLSSSDSIGADVTDILSDIAEEASKLPTSTEDCPPIGTPVRDSSSSGHSQSALFDPDVFQTNSSENPYTDPADLIADAAVSPNSDSSNHFFPDGVDFNPDLLNSQSQSGFGEEYFDESSQSGDTDDFKGYAPQALTNLGVQVLGADGGENKFKGSTPSDTVDFSIIAAASKALGSSDIMEHHSGGQSPLLNTGDLGKEKSQKRVKEGNGSGSAMAGAGIDGKPGKRSRTPSSDGKSKEKLPKRKKQETDGKSPSHSSSNRPFTPPASTGGSKSPGSSGRSQTPPGVATPPIPKITIQIPKGTVTVGKPSSHGQYTSSGSVTSSSSKSHHSHSSSSSSSSSSSTSGKIKSKSEGSSGSKMSSSLYSSQGGSGSGQSKGSAQSVGKPGSSPITKHGLSTGSGSTKMKPQGKPSSLMNPSMSKPNISPSHSRPSGGSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTGSSSSMKSSSGMGSSGSMSQKPPPSSNSSTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPGGDDPMDGQMGPSSNSSSHTMSSKHNMSGGEFQGKREKSDKEKSKVSVSGGSVDSSKKNSDSKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGEGGGDGLRPQMASSKSYGSPLISGSXPKHERCSPSHSKSPAYTPQNIDSESESGSSIAEKSYQNSPSSDDGIRPLPEYSAEKHKKHKKEKKKVKDKDRDRDRERDKDRDKKKSHGMKPESWSKSPISADQSLSMASSAILSAERPSRASPEFLIGEEDDDLMDVALIGN
SIO_010081: MED1
subclass of: SO_0000673
so part of: MED1
location: complement(join(207079..210324,211429..211534,211645..211740,211914..212115,212874..212992,213208..213332,213586..213697,214682..214771,214973..215046,215434..215508,215688..215759,216124..216152,216877..217009,217773..217827,218420..218498,219182..219288,221275..221302))
location: region:207079-221302:-1
so has part: feature:221275-221302:-1:exon
so has part: feature:219182-219288:-1:exon
so has part: feature:218420-218498:-1:exon
so has part: feature:217773-217827:-1:exon
so has part: feature:216877-217009:-1:exon
so has part: feature:216124-216152:-1:exon
so has part: feature:215688-215759:-1:exon
so has part: feature:215434-215508:-1:exon
so has part: feature:214973-215046:-1:exon
so has part: feature:214682-214771:-1:exon
so has part: feature:213586-213697:-1:exon
so has part: feature:213208-213332:-1:exon
so has part: feature:212874-212992:-1:exon
so has part: feature:211914-212115:-1:exon
so has part: feature:211645-211740:-1:exon
so has part: feature:211429-211534:-1:exon
so has part: feature:207079-210324:-1:exon

XP_039421527.1
type: Protein
SIO_000068: ncbiprotein

position:207079:-1
position: 207079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:221302:-1
position: 221302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:221275-221302:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:219182-219288:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218420-218498:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:217773-217827:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216877-217009:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:216124-216152:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:215688-215759:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:215434-215508:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:214973-215046:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214682-214771:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:213586-213697:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:213208-213332:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:212874-212992:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:211914-212115:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:211645-211740:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:211429-211534:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:207079-210324:-1:exon

CDK12
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CDK12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 222163..250017
location: region:222163-250017:1
so has part: feature:222163-250017:1:exon
subclass of: SO_0000010

120411319
type: Gene
SIO_000068: ncbigene

position:222163:1
position: 222163
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250017:1
position: 250017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222163-250017:1:exon

CDK12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CDK12
product: cyclin dependent kinase 12, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
transcript id: XM_039565612.1
SIO_010081: CDK12
subclass of: SO_0000673
so part of: CDK12
location: join(222163..223392,229405..230283,233571..233747,234735..234874,235415..235585,236322..236511,236986..237042,237546..237647,238923..239000,239713..239829,240477..240608,241744..241958,243939..244379,246592..250017)
location: region:222163-250017:1
so has part: feature:222163-223392:1:exon
so has part: feature:229405-230283:1:exon
so has part: feature:233571-233747:1:exon
so has part: feature:234735-234874:1:exon
so has part: feature:235415-235585:1:exon
so has part: feature:236322-236511:1:exon
so has part: feature:236986-237042:1:exon
so has part: feature:237546-237647:1:exon
so has part: feature:238923-239000:1:exon
so has part: feature:239713-239829:1:exon
so has part: feature:240477-240608:1:exon
so has part: feature:241744-241958:1:exon
so has part: feature:243939-244379:1:exon
so has part: feature:246592-250017:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:222163-223392:1:exon

position:223392:1
position: 223392
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:229405-230283:1:exon

position:229405:1
position: 229405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:230283:1
position: 230283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:233571-233747:1:exon

position:233571:1
position: 233571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:233747:1
position: 233747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:234735-234874:1:exon

position:234735:1
position: 234735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:234874:1
position: 234874
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:235415-235585:1:exon

position:235415:1
position: 235415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:235585:1
position: 235585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:236322-236511:1:exon

position:236322:1
position: 236322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:236511:1
position: 236511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:236986-237042:1:exon

position:236986:1
position: 236986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:237042:1
position: 237042
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:237546-237647:1:exon

position:237546:1
position: 237546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:237647:1
position: 237647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:238923-239000:1:exon

position:238923:1
position: 238923
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239000:1
position: 239000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:239713-239829:1:exon

position:239713:1
position: 239713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:239829:1
position: 239829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:240477-240608:1:exon

position:240477:1
position: 240477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:240608:1
position: 240608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:241744-241958:1:exon

position:241744:1
position: 241744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:241958:1
position: 241958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:243939-244379:1:exon

position:243939:1
position: 243939
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244379:1
position: 244379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:246592-250017:1:exon

position:246592:1
position: 246592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDK12
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CDK12
product: cyclin dependent kinase 12, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565613.1
SIO_010081: CDK12
subclass of: SO_0000673
so part of: CDK12
location: join(222166..223392,229405..230283,233571..233747,234735..234874,235415..235585,236322..236511,236986..237042,237546..237647,238923..239000,239713..239829,240477..240608,241744..241958,243939..244379,245162..245661)
location: region:222166-245661:1
so has part: feature:222166-223392:1:exon
so has part: feature:229405-230283:1:exon
so has part: feature:233571-233747:1:exon
so has part: feature:234735-234874:1:exon
so has part: feature:235415-235585:1:exon
so has part: feature:236322-236511:1:exon
so has part: feature:236986-237042:1:exon
so has part: feature:237546-237647:1:exon
so has part: feature:238923-239000:1:exon
so has part: feature:239713-239829:1:exon
so has part: feature:240477-240608:1:exon
so has part: feature:241744-241958:1:exon
so has part: feature:243939-244379:1:exon
so has part: feature:245162-245661:1:exon

position:222166:1
position: 222166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245661:1
position: 245661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222166-223392:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:229405-230283:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:233571-233747:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:234735-234874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:235415-235585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236322-236511:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:236986-237042:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:237546-237647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:238923-239000:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:239713-239829:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:240477-240608:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241744-241958:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243939-244379:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:245162-245661:1:exon

position:245162:1
position: 245162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDK12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CDK12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclin-dependent kinase 12 isoform X1
translation: MPNPERHGGKKDGGGGSSQPGSGSSNSKERHRAGSRHKRHKSRHSKESPLAAQEAAAPLGAVIKPLVEYDDISSDSDTFSDDVALKLDRRDNEERRAERSERAQKHRHHQHKRLRELMKSKQAEKDRKLEKSLDSSSRSTKERISGSSKRLLESEEHPKALSSKSSNKESRSAKAHKEKSRKERELKSSHKERSKSHRKRDAPKSYKTIDSPKRKSRSPHRKWSDSPKLDDSPSGASYVQEYDLSPPRSHTSSTYDPYRKSPGGSSRRQSLSPPYKEPVGYQSNARSPSPYSRRQRSVSPYGRRRSSSYERGSGSYSGRSPSPYGRRRSSSPFASKRSVSRSPIARKSVKSRSRSPGYSRHSSHSKKQRSGSRSRHSSISPTRLPLNSSLGAELSRKKKERAAAAAAAAKVDGKEAKGSPVFLARKENSLAELKEAGTESKKVTKTVKSEKPPDTDSVNLLYTNAEPKGPAETTKSKAEENSERKHPVPVRDSKPTGTKDSKPVAVVEDLVSPKETDTVEKEIPPPLPAIKSPPPPLPTTTPPPPTPPLPPLPPSPAVPPLPPAPVTPVQVPTSAPTSLPSSSHPRTSTLSSQVNSQSSVQVATKTQVSVTAAIPHLKTSTLPPLPLPPILVGEDDLDSPKEILPPKPVKKDREQRPRHLLTDLPLPPELPGGDPSPPDSPEPKAATPPQQPFKKRPKICCPRYGERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSSALDLLDHMLTLDPGKRCTAEQALHSDFLKDVDLSKMAPPDLPHWQDCHELWSKKRRRQRQSGMAVEEPPVSKVSRKETTSVTSTDTVKNNSSPVPPQPAQLKAEPGAADAVGLGDITQQLNQSELAVLLNLLQSQTDLSVPQMAQLLNVHSNPEMQQQLEALNQSITALTEATAQHHEPPAAAAEEAIEEPPAEVPEEQETPDAASAQGDMQNMLAVLLSQLMKSQEPGITLEESNGEKSSEQRGPRKTPTRHPEESTACPPGIVPPEKRPPEPPGPPPPPPVPEGDLSGAAQELNPAVTAALLQLLSQPDPEPLGHATQEPPAPRAPDYGRSHPSRTYSTNSSEGGFGAEELNPGQTLLEPSAQPLGKSRTFLGSVSHLGESSNYQGTGSMQFPGDQDLRFARVPVTIHSLGQSFAKSEGSNNNALVHPEAKIQSYGELGPGTAGSSGAGTGHSWGAPTQAPSSYGKTFRGPGRVPPRGGRGRGVPY
SIO_010081: CDK12
subclass of: SO_0000673
so part of: CDK12
location: join(222356..223392,229405..230283,233571..233747,234735..234874,235415..235585,236322..236511,236986..237042,237546..237647,238923..239000,239713..239829,240477..240608,241744..241958,243939..244379,246592..247283)
location: region:222356-247283:1
so has part: feature:222356-223392:1:exon
so has part: feature:229405-230283:1:exon
so has part: feature:233571-233747:1:exon
so has part: feature:234735-234874:1:exon
so has part: feature:235415-235585:1:exon
so has part: feature:236322-236511:1:exon
so has part: feature:236986-237042:1:exon
so has part: feature:237546-237647:1:exon
so has part: feature:238923-239000:1:exon
so has part: feature:239713-239829:1:exon
so has part: feature:240477-240608:1:exon
so has part: feature:241744-241958:1:exon
so has part: feature:243939-244379:1:exon
so has part: feature:246592-247283:1:exon

XP_039421546.1
type: Protein
SIO_000068: ncbiprotein

position:222356:1
position: 222356
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247283:1
position: 247283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222356-223392:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:229405-230283:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:233571-233747:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:234735-234874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:235415-235585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236322-236511:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:236986-237042:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:237546-237647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:238923-239000:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:239713-239829:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:240477-240608:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241744-241958:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243939-244379:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:246592-247283:1:exon

CDK12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CDK12
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cyclin-dependent kinase 12 isoform X2
translation: MPNPERHGGKKDGGGGSSQPGSGSSNSKERHRAGSRHKRHKSRHSKESPLAAQEAAAPLGAVIKPLVEYDDISSDSDTFSDDVALKLDRRDNEERRAERSERAQKHRHHQHKRLRELMKSKQAEKDRKLEKSLDSSSRSTKERISGSSKRLLESEEHPKALSSKSSNKESRSAKAHKEKSRKERELKSSHKERSKSHRKRDAPKSYKTIDSPKRKSRSPHRKWSDSPKLDDSPSGASYVQEYDLSPPRSHTSSTYDPYRKSPGGSSRRQSLSPPYKEPVGYQSNARSPSPYSRRQRSVSPYGRRRSSSYERGSGSYSGRSPSPYGRRRSSSPFASKRSVSRSPIARKSVKSRSRSPGYSRHSSHSKKQRSGSRSRHSSISPTRLPLNSSLGAELSRKKKERAAAAAAAAKVDGKEAKGSPVFLARKENSLAELKEAGTESKKVTKTVKSEKPPDTDSVNLLYTNAEPKGPAETTKSKAEENSERKHPVPVRDSKPTGTKDSKPVAVVEDLVSPKETDTVEKEIPPPLPAIKSPPPPLPTTTPPPPTPPLPPLPPSPAVPPLPPAPVTPVQVPTSAPTSLPSSSHPRTSTLSSQVNSQSSVQVATKTQVSVTAAIPHLKTSTLPPLPLPPILVGEDDLDSPKEILPPKPVKKDREQRPRHLLTDLPLPPELPGGDPSPPDSPEPKAATPPQQPFKKRPKICCPRYGERRQTESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLDYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSSALDLLDHMLTLDPGKRCTAEQALHSDFLKDVDLSKMAPPDLPHWQDCHELWSKKRRRQRQSGMAVEEPPVSKVSRKETTSVTSTDTVKNNSSPVPPQPAQLKAEPGAADAVGLGDITQQLNQSELAVLLNLLQSQTDLSVPQMAQLLNVHSNPEMQQQLEALNQSITALTEATAQHHEPPAAAAEEAIEEPPAEVPEEQETPDAASAQGDMQNMLAVLLSQLMKSQEPGITLEESNGEKSSEQRGPRKTPTRHPEESTATACDDLTKL
SIO_010081: CDK12
subclass of: SO_0000673
so part of: CDK12
location: join(222356..223392,229405..230283,233571..233747,234735..234874,235415..235585,236322..236511,236986..237042,237546..237647,238923..239000,239713..239829,240477..240608,241744..241958,243939..244379,245162..245193)
location: region:222356-245193:1
so has part: feature:222356-223392:1:exon
so has part: feature:229405-230283:1:exon
so has part: feature:233571-233747:1:exon
so has part: feature:234735-234874:1:exon
so has part: feature:235415-235585:1:exon
so has part: feature:236322-236511:1:exon
so has part: feature:236986-237042:1:exon
so has part: feature:237546-237647:1:exon
so has part: feature:238923-239000:1:exon
so has part: feature:239713-239829:1:exon
so has part: feature:240477-240608:1:exon
so has part: feature:241744-241958:1:exon
so has part: feature:243939-244379:1:exon
so has part: feature:245162-245193:1:exon

XP_039421547.1
type: Protein
SIO_000068: ncbiprotein

position:245193:1
position: 245193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:222356-223392:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:229405-230283:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:233571-233747:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:234735-234874:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:235415-235585:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:236322-236511:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:236986-237042:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:237546-237647:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:238923-239000:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:239713-239829:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:240477-240608:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241744-241958:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:243939-244379:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:245162-245193:1:exon

NEUROD2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: NEUROD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(<266847..269535)
location: region:266847-269535:-1
so has part: feature:266847-269535:-1:exon
subclass of: SO_0000010

120411300
type: Gene
SIO_000068: ncbigene

position:266847:-1
position: 266847
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:269535:-1
position: 269535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:266847-269535:-1:exon

NEUROD2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: NEUROD2
product: neuronal differentiation 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
transcript id: XM_039565565.1
SIO_010081: NEUROD2
subclass of: SO_0000673
so part of: NEUROD2
location: complement(join(<266847..268183,269319..269535))
location: region:266847-269535:-1
so has part: feature:269319-269535:-1:exon
so has part: feature:266847-268183:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:269319-269535:-1:exon

position:269319:-1
position: 269319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:266847-268183:-1:exon

position:268183:-1
position: 268183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NEUROD2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: NEUROD2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: neurogenic differentiation factor 2
translation: MLTRLFSEPSLVPEVPKFPGWAEECEDDARSEKEERAGKGCALPEEPPEGSLGESKEEGELGGDEEEEEEEEEGLEEAEGERPKKRGPKKRKMTKARLERSKLRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQLNSRNFLTEQGQEGGRFHGPNAASFAVHPYPYPCSRLAAAPCPPAAGPGPHGLRTHGYCASAYESLYGNTSPDYNSSEYDGGLSPPLCINGNFSLKQDSSSPDHEKSYHYSMHYSALPGSRPAAHNLVFGSAGMRGGVHSENIFPYDMHLPHERGPMYEELNASSTTDPSPTPLPIAEVAGSGGGPPPTHTPHPRRPRGPAPGAPPWALVQYGDPAPAAGPRAPWGQSAFLGGFSLFLKFLLLSISLFLKCSL
SIO_010081: NEUROD2
subclass of: SO_0000673
so part of: NEUROD2
location: complement(<266847..268178)
location: region:266847-268178:-1
so has part: feature:266847-268178:-1:exon

XP_039421499.1
type: Protein
SIO_000068: ncbiprotein

position:268178:-1
position: 268178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:266847-268178:-1:exon

PPP1R1B
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PPP1R1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 280925..285563
location: region:280925-285563:1
so has part: feature:280925-285563:1:exon
subclass of: SO_0000010

120411378
type: Gene
SIO_000068: ncbigene

position:280925:1
position: 280925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285563:1
position: 285563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280925-285563:1:exon

PPP1R1B
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PPP1R1B
product: protein phosphatase 1 regulatory inhibitor subunit 1B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
transcript id: XM_039565863.1
SIO_010081: PPP1R1B
subclass of: SO_0000673
so part of: PPP1R1B
location: join(280925..281110,282238..282298,282669..282691,283572..283647,283762..283869,284487..284555,284900..285046,285133..285563)
location: region:280925-285563:1
so has part: feature:280925-281110:1:exon
so has part: feature:282238-282298:1:exon
so has part: feature:282669-282691:1:exon
so has part: feature:283572-283647:1:exon
so has part: feature:283762-283869:1:exon
so has part: feature:284487-284555:1:exon
so has part: feature:284900-285046:1:exon
so has part: feature:285133-285563:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:280925-281110:1:exon

position:281110:1
position: 281110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:282238-282298:1:exon

position:282238:1
position: 282238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282298:1
position: 282298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:282669-282691:1:exon

position:282669:1
position: 282669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282691:1
position: 282691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:283572-283647:1:exon

position:283572:1
position: 283572
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283647:1
position: 283647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:283762-283869:1:exon

position:283762:1
position: 283762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:283869:1
position: 283869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:284487-284555:1:exon

position:284487:1
position: 284487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284555:1
position: 284555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:284900-285046:1:exon

position:284900:1
position: 284900
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285046:1
position: 285046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:285133-285563:1:exon

position:285133:1
position: 285133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PPP1R1B
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PPP1R1B
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein phosphatase 1 regulatory subunit 1B
translation: MDPKERKKIQFSVPAPPSNLDPRAVEMIRRRRPTPAMLFQLSEHSSPEDENLPYQRSSGEGCLLKPKRTNPCAYTPPSLKAVQRIVQSHLESGMGGGDSSDGEPDDGCDPDSALESAPGSQGRAERSYFPAGLKAHKRKGGQKVSFAGGIDEREEDLKSLTVSEIPEDPEGAEDDEEEPGQEQDGGTGERRHVGFAEVPSRPIGTERHSPTYPLGTS
SIO_010081: PPP1R1B
subclass of: SO_0000673
so part of: PPP1R1B
location: join(281030..281110,282238..282298,282669..282691,283572..283647,283762..283869,284487..284555,284900..285046,285133..285221)
location: region:281030-285221:1
so has part: feature:281030-281110:1:exon
so has part: feature:282238-282298:1:exon
so has part: feature:282669-282691:1:exon
so has part: feature:283572-283647:1:exon
so has part: feature:283762-283869:1:exon
so has part: feature:284487-284555:1:exon
so has part: feature:284900-285046:1:exon
so has part: feature:285133-285221:1:exon

XP_039421797.1
type: Protein
SIO_000068: ncbiprotein

position:281030:1
position: 281030
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:285221:1
position: 285221
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281030-281110:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:282238-282298:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:282669-282691:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:283572-283647:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:283762-283869:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:284487-284555:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:284900-285046:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:285133-285221:1:exon

STARD3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: STARD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 286284..305106
location: region:286284-305106:1
so has part: feature:286284-305106:1:exon
subclass of: SO_0000010

104697727
type: Gene
SIO_000068: ncbigene

position:286284:1
position: 286284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:305106:1
position: 305106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286284-305106:1:exon

STARD3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: STARD3
product: StAR related lipid transfer domain containing 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_039565814.1
SIO_010081: STARD3
subclass of: SO_0000673
so part of: STARD3
location: join(286284..286367,291172..291427,294266..294343,294548..294625,294716..294769,294876..294993,296000..296095,297041..297093,297818..297910,299080..299142,300102..300197,300674..300753,301107..301211,302393..302486,304426..305106)
location: region:286284-305106:1
so has part: feature:286284-286367:1:exon
so has part: feature:291172-291427:1:exon
so has part: feature:294266-294343:1:exon
so has part: feature:294548-294625:1:exon
so has part: feature:294716-294769:1:exon
so has part: feature:294876-294993:1:exon
so has part: feature:296000-296095:1:exon
so has part: feature:297041-297093:1:exon
so has part: feature:297818-297910:1:exon
so has part: feature:299080-299142:1:exon
so has part: feature:300102-300197:1:exon
so has part: feature:300674-300753:1:exon
so has part: feature:301107-301211:1:exon
so has part: feature:302393-302486:1:exon
so has part: feature:304426-305106:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:286284-286367:1:exon

position:286367:1
position: 286367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:291172-291427:1:exon

position:291172:1
position: 291172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:291427:1
position: 291427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:294266-294343:1:exon

position:294266:1
position: 294266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294343:1
position: 294343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:294548-294625:1:exon

position:294548:1
position: 294548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294625:1
position: 294625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:294716-294769:1:exon

position:294716:1
position: 294716
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294769:1
position: 294769
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:294876-294993:1:exon

position:294876:1
position: 294876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:294993:1
position: 294993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:296000-296095:1:exon

position:296000:1
position: 296000
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:296095:1
position: 296095
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:297041-297093:1:exon

position:297041:1
position: 297041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297093:1
position: 297093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:297818-297910:1:exon

position:297818:1
position: 297818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:297910:1
position: 297910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:299080-299142:1:exon

position:299080:1
position: 299080
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:299142:1
position: 299142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:300102-300197:1:exon

position:300102:1
position: 300102
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300197:1
position: 300197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:300674-300753:1:exon

position:300674:1
position: 300674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:300753:1
position: 300753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:301107-301211:1:exon

position:301107:1
position: 301107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:301211:1
position: 301211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:302393-302486:1:exon

position:302393:1
position: 302393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:302486:1
position: 302486
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:304426-305106:1:exon

position:304426:1
position: 304426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

STARD3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: STARD3
product: StAR related lipid transfer domain containing 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
transcript id: XM_039565816.1
SIO_010081: STARD3
subclass of: SO_0000673
so part of: STARD3
location: join(286297..286363,291172..291427,294266..294343,294548..294625,294716..294769,294876..294993,296000..296095,297041..297093,297818..297910,299080..299142,300102..300197,300674..300753,301107..301211,302393..302486,304426..305106)
location: region:286297-305106:1
so has part: feature:286297-286363:1:exon
so has part: feature:291172-291427:1:exon
so has part: feature:294266-294343:1:exon
so has part: feature:294548-294625:1:exon
so has part: feature:294716-294769:1:exon
so has part: feature:294876-294993:1:exon
so has part: feature:296000-296095:1:exon
so has part: feature:297041-297093:1:exon
so has part: feature:297818-297910:1:exon
so has part: feature:299080-299142:1:exon
so has part: feature:300102-300197:1:exon
so has part: feature:300674-300753:1:exon
so has part: feature:301107-301211:1:exon
so has part: feature:302393-302486:1:exon
so has part: feature:304426-305106:1:exon

position:286297:1
position: 286297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286297-286363:1:exon

position:286363:1
position: 286363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:291172-291427:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:294266-294343:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294548-294625:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294716-294769:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:294876-294993:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:296000-296095:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297041-297093:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:297818-297910:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:299080-299142:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:300102-300197:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:300674-300753:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:301107-301211:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:302393-302486:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:304426-305106:1:exon

STARD3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: STARD3
product: StAR related lipid transfer domain containing 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 1 EST, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
transcript id: XM_039565815.1
SIO_010081: STARD3
subclass of: SO_0000673
so part of: STARD3
location: join(286403..286526,291172..291427,294266..294343,294548..294625,294716..294769,294876..294993,296000..296095,297041..297093,297818..297910,299080..299142,300102..300197,300674..300753,301107..301211,302393..302486,304426..305106)
location: region:286403-305106:1
so has part: feature:286403-286526:1:exon
so has part: feature:291172-291427:1:exon
so has part: feature:294266-294343:1:exon
so has part: feature:294548-294625:1:exon
so has part: feature:294716-294769:1:exon
so has part: feature:294876-294993:1:exon
so has part: feature:296000-296095:1:exon
so has part: feature:297041-297093:1:exon
so has part: feature:297818-297910:1:exon
so has part: feature:299080-299142:1:exon
so has part: feature:300102-300197:1:exon
so has part: feature:300674-300753:1:exon
so has part: feature:301107-301211:1:exon
so has part: feature:302393-302486:1:exon
so has part: feature:304426-305106:1:exon

position:286403:1
position: 286403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:286403-286526:1:exon

position:286526:1
position: 286526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:291172-291427:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:294266-294343:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294548-294625:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294716-294769:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:294876-294993:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:296000-296095:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297041-297093:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:297818-297910:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:299080-299142:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:300102-300197:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:300674-300753:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:301107-301211:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:302393-302486:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:304426-305106:1:exon

STARD3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: STARD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: stAR-related lipid transfer protein 3
translation: MSKPTDLQHDLERSLPAIASISSSFSQSQGFSPYFFSPEKRKAISDVRRTFCLFVTFDLLFISLLWIIELNTKEGIKENLKGEIINYKFNTSFFDIFLLALFRFVVLLLGYAVVRLRHWWVIAVTTLVSSAFLIVKVILSELLTKGAFGYLLPIVSFVIAWLETWFLDFKVLTQEAEEERWFLAAQAAASRPLLYPRALSEGQFYSPPESFAGSDESDEEGVGRKALTTQEKEYVRQGKEAMEVVDQILAQEENWKFEKNNDFGDVVYTFEIPFHGKTFILKAFLQCSPEMVYQEVILQPEKMILWNRTVAACQILQRVEDNTIVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSSGMSTTHSLKPPLSKYVRGENGPGGFIVLKCPSNAKVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRMAELCSKP
SIO_010081: STARD3
subclass of: SO_0000673
so part of: STARD3
location: join(291215..291427,294266..294343,294548..294625,294716..294769,294876..294993,296000..296095,297041..297093,297818..297910,299080..299142,300102..300197,300674..300753,301107..301211,302393..302486,304426..304530)
location: region:291215-304530:1
so has part: feature:291215-291427:1:exon
so has part: feature:294266-294343:1:exon
so has part: feature:294548-294625:1:exon
so has part: feature:294716-294769:1:exon
so has part: feature:294876-294993:1:exon
so has part: feature:296000-296095:1:exon
so has part: feature:297041-297093:1:exon
so has part: feature:297818-297910:1:exon
so has part: feature:299080-299142:1:exon
so has part: feature:300102-300197:1:exon
so has part: feature:300674-300753:1:exon
so has part: feature:301107-301211:1:exon
so has part: feature:302393-302486:1:exon
so has part: feature:304426-304530:1:exon

XP_039421748.1
type: Protein
SIO_000068: ncbiprotein

position:291215:1
position: 291215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304530:1
position: 304530
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:291215-291427:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:294266-294343:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:294548-294625:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294716-294769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294876-294993:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:296000-296095:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:297041-297093:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297818-297910:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:299080-299142:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300102-300197:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:300674-300753:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:301107-301211:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:302393-302486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:304426-304530:1:exon

STARD3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: STARD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: stAR-related lipid transfer protein 3
translation: MSKPTDLQHDLERSLPAIASISSSFSQSQGFSPYFFSPEKRKAISDVRRTFCLFVTFDLLFISLLWIIELNTKEGIKENLKGEIINYKFNTSFFDIFLLALFRFVVLLLGYAVVRLRHWWVIAVTTLVSSAFLIVKVILSELLTKGAFGYLLPIVSFVIAWLETWFLDFKVLTQEAEEERWFLAAQAAASRPLLYPRALSEGQFYSPPESFAGSDESDEEGVGRKALTTQEKEYVRQGKEAMEVVDQILAQEENWKFEKNNDFGDVVYTFEIPFHGKTFILKAFLQCSPEMVYQEVILQPEKMILWNRTVAACQILQRVEDNTIVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSSGMSTTHSLKPPLSKYVRGENGPGGFIVLKCPSNAKVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRMAELCSKP
SIO_010081: STARD3
subclass of: SO_0000673
so part of: STARD3
location: join(291215..291427,294266..294343,294548..294625,294716..294769,294876..294993,296000..296095,297041..297093,297818..297910,299080..299142,300102..300197,300674..300753,301107..301211,302393..302486,304426..304530)
location: region:291215-304530:1
so has part: feature:291215-291427:1:exon
so has part: feature:294266-294343:1:exon
so has part: feature:294548-294625:1:exon
so has part: feature:294716-294769:1:exon
so has part: feature:294876-294993:1:exon
so has part: feature:296000-296095:1:exon
so has part: feature:297041-297093:1:exon
so has part: feature:297818-297910:1:exon
so has part: feature:299080-299142:1:exon
so has part: feature:300102-300197:1:exon
so has part: feature:300674-300753:1:exon
so has part: feature:301107-301211:1:exon
so has part: feature:302393-302486:1:exon
so has part: feature:304426-304530:1:exon

XP_039421749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:291215-291427:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:294266-294343:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:294548-294625:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294716-294769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294876-294993:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:296000-296095:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:297041-297093:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297818-297910:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:299080-299142:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300102-300197:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:300674-300753:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:301107-301211:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:302393-302486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:304426-304530:1:exon

STARD3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: STARD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: stAR-related lipid transfer protein 3
translation: MSKPTDLQHDLERSLPAIASISSSFSQSQGFSPYFFSPEKRKAISDVRRTFCLFVTFDLLFISLLWIIELNTKEGIKENLKGEIINYKFNTSFFDIFLLALFRFVVLLLGYAVVRLRHWWVIAVTTLVSSAFLIVKVILSELLTKGAFGYLLPIVSFVIAWLETWFLDFKVLTQEAEEERWFLAAQAAASRPLLYPRALSEGQFYSPPESFAGSDESDEEGVGRKALTTQEKEYVRQGKEAMEVVDQILAQEENWKFEKNNDFGDVVYTFEIPFHGKTFILKAFLQCSPEMVYQEVILQPEKMILWNRTVAACQILQRVEDNTIVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSSGMSTTHSLKPPLSKYVRGENGPGGFIVLKCPSNAKVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRMAELCSKP
SIO_010081: STARD3
subclass of: SO_0000673
so part of: STARD3
location: join(291215..291427,294266..294343,294548..294625,294716..294769,294876..294993,296000..296095,297041..297093,297818..297910,299080..299142,300102..300197,300674..300753,301107..301211,302393..302486,304426..304530)
location: region:291215-304530:1
so has part: feature:291215-291427:1:exon
so has part: feature:294266-294343:1:exon
so has part: feature:294548-294625:1:exon
so has part: feature:294716-294769:1:exon
so has part: feature:294876-294993:1:exon
so has part: feature:296000-296095:1:exon
so has part: feature:297041-297093:1:exon
so has part: feature:297818-297910:1:exon
so has part: feature:299080-299142:1:exon
so has part: feature:300102-300197:1:exon
so has part: feature:300674-300753:1:exon
so has part: feature:301107-301211:1:exon
so has part: feature:302393-302486:1:exon
so has part: feature:304426-304530:1:exon

XP_039421750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:291215-291427:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:294266-294343:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:294548-294625:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:294716-294769:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:294876-294993:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:296000-296095:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:297041-297093:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:297818-297910:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:299080-299142:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300102-300197:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:300674-300753:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:301107-301211:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:302393-302486:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:304426-304530:1:exon

LOC120411369
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411369
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 306114..307613
location: region:306114-307613:1
so has part: feature:306114-307613:1:exon
subclass of: SO_0000010

120411369
type: Gene
SIO_000068: ncbigene

position:306114:1
position: 306114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:307613:1
position: 307613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306114-307613:1:exon

LOC120411369
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC120411369
product: titin-cap
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_039565817.1
SIO_010081: LOC120411369
subclass of: SO_0000673
so part of: LOC120411369
location: join(306114..306285,307017..307613)
location: region:306114-307613:1
so has part: feature:306114-306285:1:exon
so has part: feature:307017-307613:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:306114-306285:1:exon

position:306285:1
position: 306285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:307017-307613:1:exon

position:307017:1
position: 307017
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120411369
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC120411369
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: telethonin
translation: MVGPGVMGGSKGLLSARLGCSVQEEDVGRKETFSAEWLDLELRSRPEDGWCRREVDTQRRETLEQRGAVRVLEQRSPWGVLRLGVLGQPLAQHLLPYARTLPVPLFAPPDLRGAKGGIRRTLSRSLSHEAQRG
SIO_010081: LOC120411369
subclass of: SO_0000673
so part of: LOC120411369
location: join(306140..306285,307017..307272)
location: region:306140-307272:1
so has part: feature:306140-306285:1:exon
so has part: feature:307017-307272:1:exon

XP_039421751.1
type: Protein
SIO_000068: ncbiprotein

position:306140:1
position: 306140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:307272:1
position: 307272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:306140-306285:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:307017-307272:1:exon

PNMT
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PNMT
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 308790..310876
location: region:308790-310876:1
so has part: feature:308790-310876:1:exon
subclass of: SO_0000010

120411314
type: Gene
SIO_000068: ncbigene

position:308790:1
position: 308790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:310876:1
position: 310876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308790-310876:1:exon

PNMT
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PNMT
product: phenylethanolamine N-methyltransferase
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
transcript id: XM_039565591.1
SIO_010081: PNMT
subclass of: SO_0000673
so part of: PNMT
location: join(308790..308943,309112..309319,310306..310876)
location: region:308790-310876:1
so has part: feature:308790-308943:1:exon
so has part: feature:309112-309319:1:exon
so has part: feature:310306-310876:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:308790-308943:1:exon

position:308943:1
position: 308943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:309112-309319:1:exon

position:309112:1
position: 309112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:309319:1
position: 309319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:310306-310876:1:exon

position:310306:1
position: 310306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PNMT
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PNMT
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: phenylethanolamine N-methyltransferase
translation: MSSPAALREGYEHFDPRAYLRNNYLPPRADFSSEEFVVPWKLRCLAETFASGEIRGQTLIDVGSGPTIYQLLSACDHFEEIVATDYLAVNREELGRWARGEPGAFDWRPFIQHVCKIEGRGEPWQDKERRLRQRLRRILPIDVHRPEPLGAPLXPPADALLSAFCLEAVSPDRAAFVRALAHVGNLLRPGGHALLLGALGESFYLAGPARLPVVPLQESDVREALAAAGFALRELRSYAMPPALRTGVDDVDGVFFAHAQKPLEA
SIO_010081: PNMT
subclass of: SO_0000673
so part of: PNMT
location: join(308790..308943,309112..309319,310306..310740)
location: region:308790-310740:1
so has part: feature:308790-308943:1:exon
so has part: feature:309112-309319:1:exon
so has part: feature:310306-310740:1:exon

XP_039421525.1
type: Protein
SIO_000068: ncbiprotein

position:310740:1
position: 310740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308790-308943:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:309112-309319:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:310306-310740:1:exon

PGAP3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PGAP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(311507..316222)
location: region:311507-316222:-1
so has part: feature:311507-316222:-1:exon
subclass of: SO_0000010

120411382
type: Gene
SIO_000068: ncbigene

position:311507:-1
position: 311507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:316222:-1
position: 316222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:311507-316222:-1:exon

PGAP3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PGAP3
product: post-GPI attachment to proteins phospholipase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565867.1
SIO_010081: PGAP3
subclass of: SO_0000673
so part of: PGAP3
location: complement(join(311507..312051,312718..312922,313224..313360,313930..313991,314120..314182,315028..315180,315259..315356,316024..316222))
location: region:311507-316222:-1
so has part: feature:316024-316222:-1:exon
so has part: feature:315259-315356:-1:exon
so has part: feature:315028-315180:-1:exon
so has part: feature:314120-314182:-1:exon
so has part: feature:313930-313991:-1:exon
so has part: feature:313224-313360:-1:exon
so has part: feature:312718-312922:-1:exon
so has part: feature:311507-312051:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:316024-316222:-1:exon

position:316024:-1
position: 316024
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:315259-315356:-1:exon

position:315259:-1
position: 315259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:315356:-1
position: 315356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:315028-315180:-1:exon

position:315028:-1
position: 315028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:315180:-1
position: 315180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:314120-314182:-1:exon

position:314120:-1
position: 314120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:314182:-1
position: 314182
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:313930-313991:-1:exon

position:313930:-1
position: 313930
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313991:-1
position: 313991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:313224-313360:-1:exon

position:313224:-1
position: 313224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:313360:-1
position: 313360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:312718-312922:-1:exon

position:312718:-1
position: 312718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:312922:-1
position: 312922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:311507-312051:-1:exon

position:312051:-1
position: 312051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PGAP3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PGAP3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: post-GPI attachment to proteins factor 3
translation: MAARAALLLLLMAAAAPGPARSSQGDREPLYRECLSRCERQNCSGAALRNFRARQPLYMGLTGWTCRDECKYECMWLTVRLYQQGGHRVPQFHGKWPFSRFLFFQEPASAFASFLNGLASLVMLLRYRAAVPPAAPTYPTCVAFAWVSLNAWFWSTVFHTRDTALTEKLDYFCASAVVLHSVYLCCVRTLGLQRPALISIFRAFLLLFLAGHISYLSLVRFDYGYNLVANAAAGMLTVAWWLRWCLRQGRRLPHVWKCAAAVLLLQALALLELLDFPPLLWVLDAHALWHIGTIPLNVLFYSFLMDDSLYLLKANSDLFKVD
SIO_010081: PGAP3
subclass of: SO_0000673
so part of: PGAP3
location: complement(join(311988..312051,312718..312922,313224..313360,313930..313991,314120..314182,315028..315180,315259..315356,316024..316210))
location: region:311988-316210:-1
so has part: feature:316024-316210:-1:exon
so has part: feature:315259-315356:-1:exon
so has part: feature:315028-315180:-1:exon
so has part: feature:314120-314182:-1:exon
so has part: feature:313930-313991:-1:exon
so has part: feature:313224-313360:-1:exon
so has part: feature:312718-312922:-1:exon
so has part: feature:311988-312051:-1:exon

XP_039421801.1
type: Protein
SIO_000068: ncbiprotein

position:311988:-1
position: 311988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:316210:-1
position: 316210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:316024-316210:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:315259-315356:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:315028-315180:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:314120-314182:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:313930-313991:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:313224-313360:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:312718-312922:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:311988-312051:-1:exon

ERBB2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ERBB2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 317851..327858
location: region:317851-327858:1
so has part: feature:317851-327858:1:exon
subclass of: SO_0000010

104697788
type: Gene
SIO_000068: ncbigene

position:317851:1
position: 317851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327858:1
position: 327858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317851-327858:1:exon

ERBB2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ERBB2
product: erb-b2 receptor tyrosine kinase 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
transcript id: XM_039565767.1
SIO_010081: ERBB2
subclass of: SO_0000673
so part of: ERBB2
location: join(317851..317994,320599..320750,320829..321015,321267..321404,321499..321567,322100..322212,322286..322427,322497..322613,323087..323213,323293..323366,323448..323538,324004..324202,324298..324430,324524..324614,324696..324856,324954..325001,325079..325217,325306..325429,325506..325604,325694..325879,325955..326110,326199..326274,326351..326497,326585..326682,326758..326928,327073..327331,327433..327858)
location: region:317851-327858:1
so has part: feature:317851-317994:1:exon
so has part: feature:320599-320750:1:exon
so has part: feature:320829-321015:1:exon
so has part: feature:321267-321404:1:exon
so has part: feature:321499-321567:1:exon
so has part: feature:322100-322212:1:exon
so has part: feature:322286-322427:1:exon
so has part: feature:322497-322613:1:exon
so has part: feature:323087-323213:1:exon
so has part: feature:323293-323366:1:exon
so has part: feature:323448-323538:1:exon
so has part: feature:324004-324202:1:exon
so has part: feature:324298-324430:1:exon
so has part: feature:324524-324614:1:exon
so has part: feature:324696-324856:1:exon
so has part: feature:324954-325001:1:exon
so has part: feature:325079-325217:1:exon
so has part: feature:325306-325429:1:exon
so has part: feature:325506-325604:1:exon
so has part: feature:325694-325879:1:exon
so has part: feature:325955-326110:1:exon
so has part: feature:326199-326274:1:exon
so has part: feature:326351-326497:1:exon
so has part: feature:326585-326682:1:exon
so has part: feature:326758-326928:1:exon
so has part: feature:327073-327331:1:exon
so has part: feature:327433-327858:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:317851-317994:1:exon

position:317994:1
position: 317994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:320599-320750:1:exon

position:320599:1
position: 320599
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320750:1
position: 320750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:320829-321015:1:exon

position:320829:1
position: 320829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321015:1
position: 321015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:321267-321404:1:exon

position:321267:1
position: 321267
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321404:1
position: 321404
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:321499-321567:1:exon

position:321499:1
position: 321499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:321567:1
position: 321567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:322100-322212:1:exon

position:322100:1
position: 322100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322212:1
position: 322212
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:322286-322427:1:exon

position:322286:1
position: 322286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322427:1
position: 322427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:322497-322613:1:exon

position:322497:1
position: 322497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:322613:1
position: 322613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:323087-323213:1:exon

position:323087:1
position: 323087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323213:1
position: 323213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:323293-323366:1:exon

position:323293:1
position: 323293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323366:1
position: 323366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:323448-323538:1:exon

position:323448:1
position: 323448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:323538:1
position: 323538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:324004-324202:1:exon

position:324004:1
position: 324004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324202:1
position: 324202
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:324298-324430:1:exon

position:324298:1
position: 324298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324430:1
position: 324430
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:324524-324614:1:exon

position:324524:1
position: 324524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324614:1
position: 324614
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:324696-324856:1:exon

position:324696:1
position: 324696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:324856:1
position: 324856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:324954-325001:1:exon

position:324954:1
position: 324954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325001:1
position: 325001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:325079-325217:1:exon

position:325079:1
position: 325079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325217:1
position: 325217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:325306-325429:1:exon

position:325306:1
position: 325306
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325429:1
position: 325429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:325506-325604:1:exon

position:325506:1
position: 325506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325604:1
position: 325604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:325694-325879:1:exon

position:325694:1
position: 325694
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:325879:1
position: 325879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:325955-326110:1:exon

position:325955:1
position: 325955
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326110:1
position: 326110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:326199-326274:1:exon

position:326199:1
position: 326199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326274:1
position: 326274
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:326351-326497:1:exon

position:326351:1
position: 326351
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326497:1
position: 326497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:326585-326682:1:exon

position:326585:1
position: 326585
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326682:1
position: 326682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:326758-326928:1:exon

position:326758:1
position: 326758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:326928:1
position: 326928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:327073-327331:1:exon

position:327073:1
position: 327073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327331:1
position: 327331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:327433-327858:1:exon

position:327433:1
position: 327433
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ERBB2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ERBB2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: receptor tyrosine-protein kinase erbB-2
translation: MGPRPALSTMIAAGGCLGAGLLLLAALCPPAAAEVCTGTDMKLLRPSSPESHYETLRHLYQGCQVVQGNLELTYLPADADTAFLKDIKEVQGYVLIAENSVSGLELQSLRIIRGTQLFQDRYALAVMGNAGSAGAPGLRQLGMRHLTEILKGGVRIERNPELCFQETILWIDILHRHNEFRGEIHVDTTRNRSCPDCRALCAEGRCWGEGKQDCQTLTNSICHGCPRCKGTKPTDCCHEQCAAGCTGPKHSDCLACLNFNRSGICELHCPPLVVYNSDTFESMPNPDGRYTFGASCVSQCPYNYLATEVGSCTLVCPQNSQEVTVNNVQKCEKCSKPCPEVCYGLGVDFLKGVRAVNASNIQHFSGCTKIFGSLAFLPETFAGDPSTNTPPLDPKLLRIFESLEELTGFLYIAAWPPDMKDLGVFQNLRVIRGRVLHNGAYSLTLQDLAVQALGLRALREISSGMVLVHHNPQLCFLQKVPWHSIFRNPRQRLFQTHNKXPEQCESEGLVCFHLCAQGHCWGPGPTQCMACERFLRGQECVASCNLLDGAVREHANGTRCLPCHPECQPQNGTETCFGSDADQCVACAHYKDAQQCVRRCPSGVKADASFVPVWKYPDEFGVCQLCPTNCTHSCTIRDEDGCPVDQKPSQVTSIIAGVVGALLVIVLLLITVICVKRRRQQERKHTMRRLLQETELVEPLTPSGALPNQAQMRILKETELKKVKVLGSGAFGTVYKGIWIPDGESVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVSRLLGICLTSTVQLVTQLMPYGCLLDYVRENKDHIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERLPQPPICTIDVYMIMVKCWMIDSECRPKFRELVTEFSRMARDPQRFVVIQNDLVGLPGSMDSTFYRALLDEEDMDDLVDAEEYLVPHHGFFSADTSTTYRSRISSVRSTAESPAKVEEGEGLAPFPFPAQGLAEGPEGPVPEVPEGDKVALQSPPGREPGTLPRYSEDPTGLVAEDGEEPEGFTVLAPHSTMPEYVNQAREHPPHAPPSPPDKPKGHQGKNGLIKDPKNSFPGPFGHAVENPEYLAPPGXPAPGPFSQAFDNPYYWNQDPAKGGGPEGGPSTTPTAENPEYLGLAGPDAAAV
SIO_010081: ERBB2
subclass of: SO_0000673
so part of: ERBB2
location: join(317892..317994,320599..320750,320829..321015,321267..321404,321499..321567,322100..322212,322286..322427,322497..322613,323087..323213,323293..323366,323448..323538,324004..324202,324298..324430,324524..324614,324696..324856,324954..325001,325079..325217,325306..325429,325506..325604,325694..325879,325955..326110,326199..326274,326351..326497,326585..326682,326758..326928,327073..327331,327433..327760)
location: region:317892-327760:1
so has part: feature:317892-317994:1:exon
so has part: feature:320599-320750:1:exon
so has part: feature:320829-321015:1:exon
so has part: feature:321267-321404:1:exon
so has part: feature:321499-321567:1:exon
so has part: feature:322100-322212:1:exon
so has part: feature:322286-322427:1:exon
so has part: feature:322497-322613:1:exon
so has part: feature:323087-323213:1:exon
so has part: feature:323293-323366:1:exon
so has part: feature:323448-323538:1:exon
so has part: feature:324004-324202:1:exon
so has part: feature:324298-324430:1:exon
so has part: feature:324524-324614:1:exon
so has part: feature:324696-324856:1:exon
so has part: feature:324954-325001:1:exon
so has part: feature:325079-325217:1:exon
so has part: feature:325306-325429:1:exon
so has part: feature:325506-325604:1:exon
so has part: feature:325694-325879:1:exon
so has part: feature:325955-326110:1:exon
so has part: feature:326199-326274:1:exon
so has part: feature:326351-326497:1:exon
so has part: feature:326585-326682:1:exon
so has part: feature:326758-326928:1:exon
so has part: feature:327073-327331:1:exon
so has part: feature:327433-327760:1:exon

XP_039421701.1
type: Protein
SIO_000068: ncbiprotein

position:317892:1
position: 317892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:327760:1
position: 327760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:317892-317994:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:320599-320750:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:320829-321015:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:321267-321404:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:321499-321567:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:322100-322212:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:322286-322427:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:322497-322613:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:323087-323213:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:323293-323366:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:323448-323538:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:324004-324202:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:324298-324430:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:324524-324614:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:324696-324856:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:324954-325001:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:325079-325217:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:325306-325429:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:325506-325604:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:325694-325879:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:325955-326110:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:326199-326274:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:326351-326497:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:326585-326682:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:326758-326928:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:327073-327331:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:327433-327760:1:exon

MIEN1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: MIEN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(328435..330602)
location: region:328435-330602:-1
so has part: feature:328435-330602:-1:exon
subclass of: SO_0000010

120411361
type: Gene
SIO_000068: ncbigene

position:328435:-1
position: 328435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330602:-1
position: 330602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:328435-330602:-1:exon

MIEN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: MIEN1
product: migration and invasion enhancer 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_039565768.1
SIO_010081: MIEN1
subclass of: SO_0000673
so part of: MIEN1
location: complement(join(328435..329198,329481..329557,329841..329938,330498..330602))
location: region:328435-330602:-1
so has part: feature:330498-330602:-1:exon
so has part: feature:329841-329938:-1:exon
so has part: feature:329481-329557:-1:exon
so has part: feature:328435-329198:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:330498-330602:-1:exon

position:330498:-1
position: 330498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:329841-329938:-1:exon

position:329841:-1
position: 329841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329938:-1
position: 329938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:329481-329557:-1:exon

position:329481:-1
position: 329481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:329557:-1
position: 329557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:328435-329198:-1:exon

position:329198:-1
position: 329198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MIEN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: MIEN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: migration and invasion enhancer 1
translation: MSGGAGEGNGDGNGAESGAERRVRIVVEYCEPCGFEATYQELASAVRDEYPDIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRARNGEPLEKITNSRPPCVIL
SIO_010081: MIEN1
subclass of: SO_0000673
so part of: MIEN1
location: complement(join(329115..329198,329481..329557,329841..329938,330498..330586))
location: region:329115-330586:-1
so has part: feature:330498-330586:-1:exon
so has part: feature:329841-329938:-1:exon
so has part: feature:329481-329557:-1:exon
so has part: feature:329115-329198:-1:exon

XP_039421702.1
type: Protein
SIO_000068: ncbiprotein

position:329115:-1
position: 329115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:330586:-1
position: 330586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330498-330586:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:329841-329938:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:329481-329557:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:329115-329198:-1:exon

GRB7
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: GRB7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 330736..337644
location: region:330736-337644:1
so has part: feature:330736-337644:1:exon
subclass of: SO_0000010

104697789
type: Gene
SIO_000068: ncbigene

position:330736:1
position: 330736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337644:1
position: 337644
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330736-337644:1:exon

GRB7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: GRB7
product: growth factor receptor bound protein 7
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565566.1
SIO_010081: GRB7
subclass of: SO_0000673
so part of: GRB7
location: join(330736..330754,331854..331901,333775..333913,333998..334141,334558..334714,334787..334908,334998..335075,335164..335301,335387..335497,335615..335713,336112..336192,336263..336379,336458..336518,336601..336688,337040..337133,337207..337644)
location: region:330736-337644:1
so has part: feature:330736-330754:1:exon
so has part: feature:331854-331901:1:exon
so has part: feature:333775-333913:1:exon
so has part: feature:333998-334141:1:exon
so has part: feature:334558-334714:1:exon
so has part: feature:334787-334908:1:exon
so has part: feature:334998-335075:1:exon
so has part: feature:335164-335301:1:exon
so has part: feature:335387-335497:1:exon
so has part: feature:335615-335713:1:exon
so has part: feature:336112-336192:1:exon
so has part: feature:336263-336379:1:exon
so has part: feature:336458-336518:1:exon
so has part: feature:336601-336688:1:exon
so has part: feature:337040-337133:1:exon
so has part: feature:337207-337644:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:330736-330754:1:exon

position:330754:1
position: 330754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:331854-331901:1:exon

position:331854:1
position: 331854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:331901:1
position: 331901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:333775-333913:1:exon

position:333775:1
position: 333775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:333913:1
position: 333913
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:333998-334141:1:exon

position:333998:1
position: 333998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334141:1
position: 334141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:334558-334714:1:exon

position:334558:1
position: 334558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334714:1
position: 334714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:334787-334908:1:exon

position:334787:1
position: 334787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:334908:1
position: 334908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:334998-335075:1:exon

position:334998:1
position: 334998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335075:1
position: 335075
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:335164-335301:1:exon

position:335164:1
position: 335164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335301:1
position: 335301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:335387-335497:1:exon

position:335387:1
position: 335387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335497:1
position: 335497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:335615-335713:1:exon

position:335615:1
position: 335615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:335713:1
position: 335713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:336112-336192:1:exon

position:336112:1
position: 336112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336192:1
position: 336192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:336263-336379:1:exon

position:336263:1
position: 336263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336379:1
position: 336379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:336458-336518:1:exon

position:336458:1
position: 336458
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336518:1
position: 336518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:336601-336688:1:exon

position:336601:1
position: 336601
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:336688:1
position: 336688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:337040-337133:1:exon

position:337040:1
position: 337040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:337133:1
position: 337133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:337207-337644:1:exon

position:337207:1
position: 337207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GRB7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: GRB7
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: growth factor receptor-bound protein 7
translation: MTLSDPRIPGPAGGCRDAAGTADNAMEGGAQQNSLWEPPEQDGGPSEQDAGEGPPEVKRSQPLFIHGSSRQLPQEEPRASSLPSIPNPFPELCSPSNSPILSSPALGQGPPXEGTSHVVKVFGEDGACRSLEASAGTTARQLCETLVRRTRALHDHSWALVELHQHLALERCLEDHESVVEVQSSWAPGADSRFVFRKNFAKYELFKSNAQSLFPEVMVSSCLEANKSMAHSELIQNFLNSGSCPEVQGFLHLREAGRKVWKRFHFSLRRSGLYYSTKGTSKDPRHLQYFADLTESNIYYVTQGKKLYGTPTEFGFCIKPHKVRSGVKGLKLLCSEDEQSRSCWMAAFRLFKYGMQLYCNYQQAQARLSQPPWIGPTPLRSVSDNALVAMDFSGCTGRVIENPSEVLTAALEEAQAWRKKTTHRYSLPAACHSSPLSAAIHRTQPWFHGRISREDTQQLIGRQGLVDGVFLVRESQRNPKGFVLSLCHLQRIKHYLILPSEEEGRLYFTMDDGQTRFADLIQLVEFHQINRGILPCKLRHYCTCVAL
SIO_010081: GRB7
subclass of: SO_0000673
so part of: GRB7
location: join(330736..330754,331854..331901,333775..333913,333998..334141,334558..334714,334787..334908,334998..335075,335164..335301,335387..335497,335615..335713,336112..336192,336263..336379,336458..336518,336601..336688,337040..337133,337207..337353)
location: region:330736-337353:1
so has part: feature:330736-330754:1:exon
so has part: feature:331854-331901:1:exon
so has part: feature:333775-333913:1:exon
so has part: feature:333998-334141:1:exon
so has part: feature:334558-334714:1:exon
so has part: feature:334787-334908:1:exon
so has part: feature:334998-335075:1:exon
so has part: feature:335164-335301:1:exon
so has part: feature:335387-335497:1:exon
so has part: feature:335615-335713:1:exon
so has part: feature:336112-336192:1:exon
so has part: feature:336263-336379:1:exon
so has part: feature:336458-336518:1:exon
so has part: feature:336601-336688:1:exon
so has part: feature:337040-337133:1:exon
so has part: feature:337207-337353:1:exon

XP_039421500.1
type: Protein
SIO_000068: ncbiprotein

position:337353:1
position: 337353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330736-330754:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:331854-331901:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:333775-333913:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:333998-334141:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:334558-334714:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:334787-334908:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:334998-335075:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:335164-335301:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:335387-335497:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:335615-335713:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:336112-336192:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:336263-336379:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:336458-336518:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:336601-336688:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:337040-337133:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:337207-337353:1:exon

RDH8
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RDH8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 338310..341590
location: region:338310-341590:1
so has part: feature:338310-341590:1:exon
subclass of: SO_0000010

104697790
type: Gene
SIO_000068: ncbigene

position:338310:1
position: 338310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:341590:1
position: 341590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338310-341590:1:exon

RDH8
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RDH8
product: retinol dehydrogenase 8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transcript id: XM_039565830.1
SIO_010081: RDH8
subclass of: SO_0000673
so part of: RDH8
location: join(338310..338432,338505..338666,339168..339347,339420..339513,339592..339775,340395..341590)
location: region:338310-341590:1
so has part: feature:338310-338432:1:exon
so has part: feature:338505-338666:1:exon
so has part: feature:339168-339347:1:exon
so has part: feature:339420-339513:1:exon
so has part: feature:339592-339775:1:exon
so has part: feature:340395-341590:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:338310-338432:1:exon

position:338432:1
position: 338432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:338505-338666:1:exon

position:338505:1
position: 338505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:338666:1
position: 338666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:339168-339347:1:exon

position:339168:1
position: 339168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339347:1
position: 339347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:339420-339513:1:exon

position:339420:1
position: 339420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339513:1
position: 339513
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:339592-339775:1:exon

position:339592:1
position: 339592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:339775:1
position: 339775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:340395-341590:1:exon

position:340395:1
position: 340395
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RDH8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RDH8
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: retinol dehydrogenase 8
translation: MAPKTVLITGCSSGIGLALAVRLAQDKQRRFRVIATMRNVGRSGALAAAAGPALGRTLEIKQLDVCDEGSIRACLDSIPGRHVDILVSNAGVGMAGPLECQSLTAMQSLMDTNFFGLVRLVKEVLPDMKRRRGGHIVVISSIMGLQGIVFNDIYSASKFAVEGFCESLVVQALRFNVAISLVEPGPVMTEFETKLYEEAERADYSRTDPETAEIFTKLYLRSSKDVFTSIGQTPEDIAEHTLRVIEAARPPFRHQTNVAYTPMAALKHADPSGALITDAFYKLVFKYDTVLRFSLRAIRLLRWKAQKVKAGVRLLGFK
SIO_010081: RDH8
subclass of: SO_0000673
so part of: RDH8
location: join(338336..338432,338505..338666,339168..339347,339420..339513,339592..339775,340395..340634)
location: region:338336-340634:1
so has part: feature:338336-338432:1:exon
so has part: feature:338505-338666:1:exon
so has part: feature:339168-339347:1:exon
so has part: feature:339420-339513:1:exon
so has part: feature:339592-339775:1:exon
so has part: feature:340395-340634:1:exon

XP_039421764.1
type: Protein
SIO_000068: ncbiprotein

position:338336:1
position: 338336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:340634:1
position: 340634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:338336-338432:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:338505-338666:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:339168-339347:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:339420-339513:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:339592-339775:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:340395-340634:1:exon

IKZF3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(344476..382313)
location: region:344476-382313:-1
so has part: feature:344476-382313:-1:exon
subclass of: SO_0000010

104697728
type: Gene
SIO_000068: ncbigene

position:344476:-1
position: 344476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:382313:-1
position: 382313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:344476-382313:-1:exon

IKZF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IKZF3
product: IKAROS family zinc finger 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_039565826.1
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(344476..346990,350362..350478,357218..357334,358294..358461,359124..359384,372692..372802,374033..374086,379448..379510,379932..380033,382100..382313))
location: region:344476-382313:-1
so has part: feature:382100-382313:-1:exon
so has part: feature:379932-380033:-1:exon
so has part: feature:379448-379510:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:344476-346990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:382100-382313:-1:exon

position:382100:-1
position: 382100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:379932-380033:-1:exon

position:379932:-1
position: 379932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:380033:-1
position: 380033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:379448-379510:-1:exon

position:379448:-1
position: 379448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:379510:-1
position: 379510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:374033-374086:-1:exon

position:374033:-1
position: 374033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:374086:-1
position: 374086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:372692-372802:-1:exon

position:372692:-1
position: 372692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:372802:-1
position: 372802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:359124-359384:-1:exon

position:359124:-1
position: 359124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:359384:-1
position: 359384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:358294-358461:-1:exon

position:358294:-1
position: 358294
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:358461:-1
position: 358461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:357218-357334:-1:exon

position:357218:-1
position: 357218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:357334:-1
position: 357334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:350362-350478:-1:exon

position:350362:-1
position: 350362
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:350478:-1
position: 350478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:344476-346990:-1:exon

position:346990:-1
position: 346990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

IKZF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IKZF3
product: IKAROS family zinc finger 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_039565825.1
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(344476..346990,350362..350478,357218..357334,358294..358461,359124..359384,372692..372802,374033..374086,378686..378794))
location: region:344476-378794:-1
so has part: feature:378686-378794:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:344476-346990:-1:exon

position:378794:-1
position: 378794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378686-378794:-1:exon

position:378686:-1
position: 378686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344476-346990:-1:exon

IKZF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IKZF3
product: IKAROS family zinc finger 3, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_039565829.1
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(344476..346990,350362..350478,357218..357334,372692..372802,374033..374086,376406..376498))
location: region:344476-376498:-1
so has part: feature:376406-376498:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:344476-346990:-1:exon

position:376498:-1
position: 376498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376498:-1:exon

position:376406:-1
position: 376406
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:344476-346990:-1:exon

IKZF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IKZF3
product: IKAROS family zinc finger 3, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_039565828.1
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(344476..346990,350362..350478,357218..357334,358294..358461,372692..372802,374033..374086,376406..376498))
location: region:344476-376498:-1
so has part: feature:376406-376498:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:344476-346990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376498:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344476-346990:-1:exon

IKZF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IKZF3
product: IKAROS family zinc finger 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_039565827.1
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(344476..346990,350362..350478,357218..357334,359124..359384,372692..372802,374033..374086,376406..376498))
location: region:344476-376498:-1
so has part: feature:376406-376498:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:344476-346990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376498:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:344476-346990:-1:exon

IKZF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IKZF3
product: IKAROS family zinc finger 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_039565824.1
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(344476..346990,350362..350478,357218..357334,358294..358461,359124..359384,372692..372802,374033..374086,376406..376498))
location: region:344476-376498:-1
so has part: feature:376406-376498:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:344476-346990:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376498:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:344476-346990:-1:exon

IKZF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Aiolos isoform X2
translation: MEDSQPGMDLSNPQEQPIAAEEQEDLTDCNLNKSQEMESMDNVEDMKEHNQSNEEAGDDVIKVKGEYSEREESALNSEPMENMEESELPYTYPREYNEYESIKLERHSGSYDNVRPASGKMNCDICGLACISLNVLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCSYACQRRDALTGHLRTHSVEKPYKCEFCGRSYKQRSSLEEHKERCRTYLQNAGMCEAASVEARHIKAEMGTERALVLDRLASNVAKRKSSMPQKFIGEKRPSFDVNYNTSFLYEKESEMMHGRMMDQAINNAITYLGAEALRPLVQTPPAPTAEMVPVISSLYPLPLPRADVPNGTTLEADKSHGHLRDKSLSSDRGLSPNNSGHDSTDTDSNHEERPNPTFHQSQVIPAPTRNGLQALKDFPRPYDIIKPPAICPRDAFKVINKEGEAIGVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNVCGYRSHDRYEFSSHIARGEHRVVLK
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(346287..346990,350362..350478,357218..357334,358294..358461,359124..359384,372692..372802,374033..374086,378686..378692))
location: region:346287-378692:-1
so has part: feature:378686-378692:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:346287-346990:-1:exon

XP_039421759.1
type: Protein
SIO_000068: ncbiprotein

position:346287:-1
position: 346287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:378692:-1
position: 378692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:378686-378692:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:346287-346990:-1:exon

IKZF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Aiolos isoform X6
translation: MHPSQWSSLKLGKTNVFYSQPGMDLSNPQEQPIAAEEQEDLTDCNLNKSQEMESMDNVEDMKEHNQSNEEAGVEKPYKCEFCGRSYKQRSSLEEHKERCRTYLQNAGMCEAASVEARHIKAEMGTERALVLDRLASNVAKRKSSMPQKFIGEKRPSFDVNYNTSFLYEKESEMMHGRMMDQAINNAITYLGAEALRPLVQTPPAPTAEMVPVISSLYPLPLPRADVPNGTTLEADKSHGHLRDKSLSSDRGLSPNNSGHDSTDTDSNHEERPNPTFHQSQVIPAPTRNGLQALKDFPRPYDIIKPPAICPRDAFKVINKEGEAIGVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNVCGYRSHDRYEFSSHIARGEHRVVLK
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(346287..346990,350362..350478,357218..357334,372692..372802,374033..374086,376406..376457))
location: region:346287-376457:-1
so has part: feature:376406-376457:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:346287-346990:-1:exon

XP_039421763.1
type: Protein
SIO_000068: ncbiprotein

position:376457:-1
position: 376457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376457:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:346287-346990:-1:exon

IKZF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Aiolos isoform X5
translation: MHPSQWSSLKLGKTNVFYSQPGMDLSNPQEQPIAAEEQEDLTDCNLNKSQEMESMDNVEDMKEHNQSNEEAGGERPFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCSYACQRRDALTGHLRTHSVEKPYKCEFCGRSYKQRSSLEEHKERCRTYLQNAGMCEAASVEARHIKAEMGTERALVLDRLASNVAKRKSSMPQKFIGEKRPSFDVNYNTSFLYEKESEMMHGRMMDQAINNAITYLGAEALRPLVQTPPAPTAEMVPVISSLYPLPLPRADVPNGTTLEADKSHGHLRDKSLSSDRGLSPNNSGHDSTDTDSNHEERPNPTFHQSQVIPAPTRNGLQALKDFPRPYDIIKPPAICPRDAFKVINKEGEAIGVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNVCGYRSHDRYEFSSHIARGEHRVVLK
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(346287..346990,350362..350478,357218..357334,358294..358461,372692..372802,374033..374086,376406..376457))
location: region:346287-376457:-1
so has part: feature:376406-376457:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:346287-346990:-1:exon

XP_039421762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376457:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:346287-346990:-1:exon

IKZF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Aiolos isoform X4
translation: MHPSQWSSLKLGKTNVFYSQPGMDLSNPQEQPIAAEEQEDLTDCNLNKSQEMESMDNVEDMKEHNQSNEEAGDDVIKVKGEYSEREESALNSEPMENMEESELPYTYPREYNEYESIKLERHSGSYDNVRPASGKMNCDICGLACISLNVLMVHKRSHTVEKPYKCEFCGRSYKQRSSLEEHKERCRTYLQNAGMCEAASVEARHIKAEMGTERALVLDRLASNVAKRKSSMPQKFIGEKRPSFDVNYNTSFLYEKESEMMHGRMMDQAINNAITYLGAEALRPLVQTPPAPTAEMVPVISSLYPLPLPRADVPNGTTLEADKSHGHLRDKSLSSDRGLSPNNSGHDSTDTDSNHEERPNPTFHQSQVIPAPTRNGLQALKDFPRPYDIIKPPAICPRDAFKVINKEGEAIGVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNVCGYRSHDRYEFSSHIARGEHRVVLK
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(346287..346990,350362..350478,357218..357334,359124..359384,372692..372802,374033..374086,376406..376457))
location: region:346287-376457:-1
so has part: feature:376406-376457:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:346287-346990:-1:exon

XP_039421761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376457:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:346287-346990:-1:exon

IKZF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Aiolos isoform X1
translation: MHPSQWSSLKLGKTNVFYSQPGMDLSNPQEQPIAAEEQEDLTDCNLNKSQEMESMDNVEDMKEHNQSNEEAGDDVIKVKGEYSEREESALNSEPMENMEESELPYTYPREYNEYESIKLERHSGSYDNVRPASGKMNCDICGLACISLNVLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCSYACQRRDALTGHLRTHSVEKPYKCEFCGRSYKQRSSLEEHKERCRTYLQNAGMCEAASVEARHIKAEMGTERALVLDRLASNVAKRKSSMPQKFIGEKRPSFDVNYNTSFLYEKESEMMHGRMMDQAINNAITYLGAEALRPLVQTPPAPTAEMVPVISSLYPLPLPRADVPNGTTLEADKSHGHLRDKSLSSDRGLSPNNSGHDSTDTDSNHEERPNPTFHQSQVIPAPTRNGLQALKDFPRPYDIIKPPAICPRDAFKVINKEGEAIGVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNVCGYRSHDRYEFSSHIARGEHRVVLK
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(346287..346990,350362..350478,357218..357334,358294..358461,359124..359384,372692..372802,374033..374086,376406..376457))
location: region:346287-376457:-1
so has part: feature:376406-376457:-1:exon
so has part: feature:374033-374086:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:346287-346990:-1:exon

XP_039421758.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:376406-376457:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374033-374086:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:346287-346990:-1:exon

IKZF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IKZF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein Aiolos isoform X3
translation: MDLSNPQEQPIAAEEQEDLTDCNLNKSQEMESMDNVEDMKEHNQSNEEAGDDVIKVKGEYSEREESALNSEPMENMEESELPYTYPREYNEYESIKLERHSGSYDNVRPASGKMNCDICGLACISLNVLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLCSYACQRRDALTGHLRTHSVEKPYKCEFCGRSYKQRSSLEEHKERCRTYLQNAGMCEAASVEARHIKAEMGTERALVLDRLASNVAKRKSSMPQKFIGEKRPSFDVNYNTSFLYEKESEMMHGRMMDQAINNAITYLGAEALRPLVQTPPAPTAEMVPVISSLYPLPLPRADVPNGTTLEADKSHGHLRDKSLSSDRGLSPNNSGHDSTDTDSNHEERPNPTFHQSQVIPAPTRNGLQALKDFPRPYDIIKPPAICPRDAFKVINKEGEAIGVYRCDHCRVLFLDYVMFTIHMGCHGFRDPFECNVCGYRSHDRYEFSSHIARGEHRVVLK
SIO_010081: IKZF3
subclass of: SO_0000673
so part of: IKZF3
location: complement(join(346287..346990,350362..350478,357218..357334,358294..358461,359124..359384,372692..372802,374033..374072))
location: region:346287-374072:-1
so has part: feature:374033-374072:-1:exon
so has part: feature:372692-372802:-1:exon
so has part: feature:359124-359384:-1:exon
so has part: feature:358294-358461:-1:exon
so has part: feature:357218-357334:-1:exon
so has part: feature:350362-350478:-1:exon
so has part: feature:346287-346990:-1:exon

XP_039421760.1
type: Protein
SIO_000068: ncbiprotein

position:374072:-1
position: 374072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374033-374072:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:372692-372802:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:359124-359384:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:358294-358461:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:357218-357334:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:350362-350478:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:346287-346990:-1:exon

ZPBP2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ZPBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 382005..388087
location: region:382005-388087:1
so has part: feature:382005-388087:1:exon
subclass of: SO_0000010

104697791
type: Gene
SIO_000068: ncbigene

position:382005:1
position: 382005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:388087:1
position: 388087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382005-388087:1:exon

ZPBP2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ZPBP2
product: zona pellucida binding protein 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010412831.3
SIO_010081: ZPBP2
subclass of: SO_0000673
so part of: ZPBP2
location: join(382005..382035,382474..382569,383415..383492,383975..384100,384420..384581,385325..385543,386570..386655,387232..387409,387946..388087)
location: region:382005-388087:1
so has part: feature:382005-382035:1:exon
so has part: feature:382474-382569:1:exon
so has part: feature:383415-383492:1:exon
so has part: feature:383975-384100:1:exon
so has part: feature:384420-384581:1:exon
so has part: feature:385325-385543:1:exon
so has part: feature:386570-386655:1:exon
so has part: feature:387232-387409:1:exon
so has part: feature:387946-388087:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:382005-382035:1:exon

position:382035:1
position: 382035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:382474-382569:1:exon

position:382474:1
position: 382474
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:382569:1
position: 382569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:383415-383492:1:exon

position:383415:1
position: 383415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:383492:1
position: 383492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:383975-384100:1:exon

position:383975:1
position: 383975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:384100:1
position: 384100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:384420-384581:1:exon

position:384420:1
position: 384420
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:384581:1
position: 384581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:385325-385543:1:exon

position:385325:1
position: 385325
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:385543:1
position: 385543
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:386570-386655:1:exon

position:386570:1
position: 386570
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:386655:1
position: 386655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:387232-387409:1:exon

position:387232:1
position: 387232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:387409:1
position: 387409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:387946-388087:1:exon

position:387946:1
position: 387946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ZPBP2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ZPBP2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zona pellucida-binding protein 2
translation: MTEPFPPLPHWAAGGWRGGGGRPRCPPSTLLGVAAVVVGAGWVRAEPKGEQSIDLIGKNEVYGDTRHEVNVYVKVFTNSPFLVCMDLALSQERIIDPKYLWIGPDGRDLEGQSYVNLTETGKLMVMGFRESMSGAYTCTLSHKIIEAMTQEETEMVEAYKFMVYAYREADHAYQVSVRFSTMRCKLKTNGLFVEKLNKILNSTISYLTCHITQSSSKCHSIRTPKNGLQYELFVNFLVSPLASGWEEVCHKLPYDCEDVTNRRVRQAAERIGKFFHQLRQILEYELHVVPAVQYVDNSFSMTPIDSCRPGFGKNHHTHQNCASCCVVCDPGTYSPNNEVTCRTCARPQARMYGAKSCS
SIO_010081: ZPBP2
subclass of: SO_0000673
so part of: ZPBP2
location: join(382005..382035,382474..382569,383415..383492,383975..384100,384420..384581,385325..385543,386570..386655,387232..387409,387946..388046)
location: region:382005-388046:1
so has part: feature:382005-382035:1:exon
so has part: feature:382474-382569:1:exon
so has part: feature:383415-383492:1:exon
so has part: feature:383975-384100:1:exon
so has part: feature:384420-384581:1:exon
so has part: feature:385325-385543:1:exon
so has part: feature:386570-386655:1:exon
so has part: feature:387232-387409:1:exon
so has part: feature:387946-388046:1:exon

XP_010411133.2
type: Protein
SIO_000068: ncbiprotein

position:388046:1
position: 388046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:382005-382035:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:382474-382569:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:383415-383492:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:383975-384100:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:384420-384581:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:385325-385543:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:386570-386655:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:387232-387409:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:387946-388046:1:exon

LRRC3C
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LRRC3C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(393601..398088)
location: region:393601-398088:-1
so has part: feature:393601-398088:-1:exon
subclass of: SO_0000010

104697729
type: Gene
SIO_000068: ncbigene

position:393601:-1
position: 393601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:398088:-1
position: 398088
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393601-398088:-1:exon

LRRC3C
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LRRC3C
product: leucine rich repeat containing 3C
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_039565868.1
SIO_010081: LRRC3C
subclass of: SO_0000673
so part of: LRRC3C
location: complement(join(393601..396281,398032..398088))
location: region:393601-398088:-1
so has part: feature:398032-398088:-1:exon
so has part: feature:393601-396281:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:398032-398088:-1:exon

position:398032:-1
position: 398032
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:393601-396281:-1:exon

position:396281:-1
position: 396281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LRRC3C
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LRRC3C
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: leucine-rich repeat-containing protein 3C
translation: MTAAQRVLLCPITMGLLLQNLFLLLLLFLLGSCLHPAAAFPKGCYPSEEEGLKTFRCSNAQLTEVPRDIPNDTNKLYLDFNQIPFLPRDAFRDLPLLLELDLSHNAIARVESGAFQGLAEHLHSLDLSSNRLVSVSKDAFSNLKAKVNLSNNPWLCDCRLQELIRAVELAADSSGGIMCDSSTQEEHVGKAFLQVIADTDFCNVYKKTTDIAMLVTMFGWFAMVISYLVYYVRQNQEDARRHLEYLKSLPSKQRRSEESSTISTVV
SIO_010081: LRRC3C
subclass of: SO_0000673
so part of: LRRC3C
location: complement(395427..396227)
location: region:395427-396227:-1
so has part: feature:395427-396227:-1:exon

XP_039421802.1
type: Protein
SIO_000068: ncbiprotein

position:395427:-1
position: 395427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:396227:-1
position: 396227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:395427-396227:-1:exon

ORMDL3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ORMDL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 399778..411227
location: region:399778-411227:1
so has part: feature:399778-411227:1:exon
subclass of: SO_0000010

104697730
type: Gene
SIO_000068: ncbigene

position:399778:1
position: 399778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:411227:1
position: 411227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399778-411227:1:exon

ORMDL3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ORMDL3
product: ORMDL sphingolipid biosynthesis regulator 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_039565789.1
SIO_010081: ORMDL3
subclass of: SO_0000673
so part of: ORMDL3
location: join(399778..399848,405538..405738,406963..407114,407233..411227)
location: region:399778-411227:1
so has part: feature:399778-399848:1:exon
so has part: feature:405538-405738:1:exon
so has part: feature:406963-407114:1:exon
so has part: feature:407233-411227:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:399778-399848:1:exon

position:399848:1
position: 399848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:405538-405738:1:exon

position:405538:1
position: 405538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:405738:1
position: 405738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:406963-407114:1:exon

position:406963:1
position: 406963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:407114:1
position: 407114
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:407233-411227:1:exon

position:407233:1
position: 407233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

ORMDL3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ORMDL3
product: ORMDL sphingolipid biosynthesis regulator 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 43 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565788.1
SIO_010081: ORMDL3
subclass of: SO_0000673
so part of: ORMDL3
location: join(401461..401567,405538..405738,406963..407114,407233..411227)
location: region:401461-411227:1
so has part: feature:401461-401567:1:exon
so has part: feature:405538-405738:1:exon
so has part: feature:406963-407114:1:exon
so has part: feature:407233-411227:1:exon

position:401461:1
position: 401461
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:401461-401567:1:exon

position:401567:1
position: 401567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:405538-405738:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:406963-407114:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:407233-411227:1:exon

ORMDL3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ORMDL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ORM1-like protein 3
translation: MNVGTAHSEVNPNTRVMNSRGIWLSYVLGIGLLHVVLLSIPFFSVPVVWTLTNIIHNLSMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTIMPIVLYFLTSFYTKYDRIHFIINTISLMSVLIPKLPQFHGVRIFGINKY
SIO_010081: ORMDL3
subclass of: SO_0000673
so part of: ORMDL3
location: join(405565..405738,406963..407114,407233..407368)
location: region:405565-407368:1
so has part: feature:405565-405738:1:exon
so has part: feature:406963-407114:1:exon
so has part: feature:407233-407368:1:exon

XP_039421722.1
type: Protein
SIO_000068: ncbiprotein

position:405565:1
position: 405565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:407368:1
position: 407368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:405565-405738:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406963-407114:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:407233-407368:1:exon

ORMDL3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ORMDL3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ORM1-like protein 3
translation: MNVGTAHSEVNPNTRVMNSRGIWLSYVLGIGLLHVVLLSIPFFSVPVVWTLTNIIHNLSMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTIMPIVLYFLTSFYTKYDRIHFIINTISLMSVLIPKLPQFHGVRIFGINKY
SIO_010081: ORMDL3
subclass of: SO_0000673
so part of: ORMDL3
location: join(405565..405738,406963..407114,407233..407368)
location: region:405565-407368:1
so has part: feature:405565-405738:1:exon
so has part: feature:406963-407114:1:exon
so has part: feature:407233-407368:1:exon

XP_039421723.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:405565-405738:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:406963-407114:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:407233-407368:1:exon

GSDMA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: GSDMA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 411462..417207
location: region:411462-417207:1
so has part: feature:411462-417207:1:exon
subclass of: SO_0000010

104697731
type: Gene
SIO_000068: ncbigene

position:411462:1
position: 411462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:417207:1
position: 417207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411462-417207:1:exon

GSDMA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: GSDMA
product: gasdermin A, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XM_010412743.4
SIO_010081: GSDMA
subclass of: SO_0000673
so part of: GSDMA
location: join(411462..411961,412038..412165,413029..413293,413457..413652,413905..414070,414143..414236,414638..414691,414936..415090,415287..415437,416120..416193,416332..417207)
location: region:411462-417207:1
so has part: feature:411462-411961:1:exon
so has part: feature:412038-412165:1:exon
so has part: feature:413029-413293:1:exon
so has part: feature:413457-413652:1:exon
so has part: feature:413905-414070:1:exon
so has part: feature:414143-414236:1:exon
so has part: feature:414638-414691:1:exon
so has part: feature:414936-415090:1:exon
so has part: feature:415287-415437:1:exon
so has part: feature:416120-416193:1:exon
so has part: feature:416332-417207:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:411462-411961:1:exon

position:411961:1
position: 411961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:412038-412165:1:exon

position:412038:1
position: 412038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:412165:1
position: 412165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:413029-413293:1:exon

position:413029:1
position: 413029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:413293:1
position: 413293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:413457-413652:1:exon

position:413457:1
position: 413457
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:413652:1
position: 413652
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:413905-414070:1:exon

position:413905:1
position: 413905
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:414070:1
position: 414070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:414143-414236:1:exon

position:414143:1
position: 414143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:414236:1
position: 414236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:414638-414691:1:exon

position:414638:1
position: 414638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:414691:1
position: 414691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:414936-415090:1:exon

position:414936:1
position: 414936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415090:1
position: 415090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:415287-415437:1:exon

position:415287:1
position: 415287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:415437:1
position: 415437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:416120-416193:1:exon

position:416120:1
position: 416120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416193:1
position: 416193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:416332-417207:1:exon

position:416332:1
position: 416332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

GSDMA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: GSDMA
product: gasdermin A, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_019293876.3
SIO_010081: GSDMA
subclass of: SO_0000673
so part of: GSDMA
location: join(411880..411961,412062..412165,413029..413293,413457..413652,413905..414070,414143..414236,414638..414691,414936..415090,415287..415437,416120..416193,416332..417207)
location: region:411880-417207:1
so has part: feature:411880-411961:1:exon
so has part: feature:412062-412165:1:exon
so has part: feature:413029-413293:1:exon
so has part: feature:413457-413652:1:exon
so has part: feature:413905-414070:1:exon
so has part: feature:414143-414236:1:exon
so has part: feature:414638-414691:1:exon
so has part: feature:414936-415090:1:exon
so has part: feature:415287-415437:1:exon
so has part: feature:416120-416193:1:exon
so has part: feature:416332-417207:1:exon

position:411880:1
position: 411880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:411880-411961:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:412062-412165:1:exon

position:412062:1
position: 412062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:413029-413293:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:413457-413652:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:413905-414070:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:414143-414236:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:414638-414691:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:414936-415090:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:415287-415437:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:416120-416193:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:416332-417207:1:exon

GSDMA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: GSDMA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gasdermin-A
translation: MFKKFTKFLVKQMDPSKELVPVESIADNEHFRPLYLLKKKSKSKTVFHPAPYYQRTGFTLDDVLLPGEDGKSIVSFHQDSSQFTLTKVSADQADGGLSISFDPASVELKGAASLSKVFSIKPQKKSVSLESLEALRRERQINMDHSFIRQLRRTDIHLYVVTEILEASEETIYKESTKADGGFKAKFYSTLCAQSTKEDKQSIVIPKGCTLAFRTIQLHIRDGAWDLDYFPAKAMRRADYVADGPSQGKLGVVLREVKYSCRIFPELSPDLLLIVLNTIKTVMRDKNLLQELSQKMEEVPEENDGYQLKTESPDLKDLFSTLEHSPRDLLLQLAEGITYIFDALHELLEDQLLLLLESLERKIVSQQLELVENLLKHDLENRKEPFHVDAELLSFPHKEEQLLTMALVEMSGVQLQEDGSAVPRDQPFEAMAALFVVLYTLNLLSGLE
SIO_010081: GSDMA
subclass of: SO_0000673
so part of: GSDMA
location: join(413074..413293,413457..413652,413905..414070,414143..414236,414638..414691,414936..415090,415287..415437,416120..416193,416332..416568)
location: region:413074-416568:1
so has part: feature:413074-413293:1:exon
so has part: feature:413457-413652:1:exon
so has part: feature:413905-414070:1:exon
so has part: feature:414143-414236:1:exon
so has part: feature:414638-414691:1:exon
so has part: feature:414936-415090:1:exon
so has part: feature:415287-415437:1:exon
so has part: feature:416120-416193:1:exon
so has part: feature:416332-416568:1:exon

XP_010411045.3
type: Protein
SIO_000068: ncbiprotein

position:413074:1
position: 413074
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:416568:1
position: 416568
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:413074-413293:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:413457-413652:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:413905-414070:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:414143-414236:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:414638-414691:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:414936-415090:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:415287-415437:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:416120-416193:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:416332-416568:1:exon

GSDMA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: GSDMA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: gasdermin-A
translation: MFKKFTKFLVKQMDPSKELVPVESIADNEHFRPLYLLKKKSKSKTVFHPAPYYQRTGFTLDDVLLPGEDGKSIVSFHQDSSQFTLTKVSADQADGGLSISFDPASVELKGAASLSKVFSIKPQKKSVSLESLEALRRERQINMDHSFIRQLRRTDIHLYVVTEILEASEETIYKESTKADGGFKAKFYSTLCAQSTKEDKQSIVIPKGCTLAFRTIQLHIRDGAWDLDYFPAKAMRRADYVADGPSQGKLGVVLREVKYSCRIFPELSPDLLLIVLNTIKTVMRDKNLLQELSQKMEEVPEENDGYQLKTESPDLKDLFSTLEHSPRDLLLQLAEGITYIFDALHELLEDQLLLLLESLERKIVSQQLELVENLLKHDLENRKEPFHVDAELLSFPHKEEQLLTMALVEMSGVQLQEDGSAVPRDQPFEAMAALFVVLYTLNLLSGLE
SIO_010081: GSDMA
subclass of: SO_0000673
so part of: GSDMA
location: join(413074..413293,413457..413652,413905..414070,414143..414236,414638..414691,414936..415090,415287..415437,416120..416193,416332..416568)
location: region:413074-416568:1
so has part: feature:413074-413293:1:exon
so has part: feature:413457-413652:1:exon
so has part: feature:413905-414070:1:exon
so has part: feature:414143-414236:1:exon
so has part: feature:414638-414691:1:exon
so has part: feature:414936-415090:1:exon
so has part: feature:415287-415437:1:exon
so has part: feature:416120-416193:1:exon
so has part: feature:416332-416568:1:exon

XP_019149421.3
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:413074-413293:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:413457-413652:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:413905-414070:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:414143-414236:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:414638-414691:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:414936-415090:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:415287-415437:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:416120-416193:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:416332-416568:1:exon

PSMD3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PSMD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 418328..423668
location: region:418328-423668:1
so has part: feature:418328-423668:1:exon
subclass of: SO_0000010

104697732
type: Gene
SIO_000068: ncbigene

position:418328:1
position: 418328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:423668:1
position: 423668
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418328-423668:1:exon

PSMD3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PSMD3
product: proteasome 26S subunit, non-ATPase 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 32 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_010412744.4
SIO_010081: PSMD3
subclass of: SO_0000673
so part of: PSMD3
location: join(418328..418551,419449..419639,420373..420510,420686..420822,420909..421099,421280..421383,421978..422092,422305..422424,422501..422604,422823..422978,423071..423121,423218..423668)
location: region:418328-423668:1
so has part: feature:418328-418551:1:exon
so has part: feature:419449-419639:1:exon
so has part: feature:420373-420510:1:exon
so has part: feature:420686-420822:1:exon
so has part: feature:420909-421099:1:exon
so has part: feature:421280-421383:1:exon
so has part: feature:421978-422092:1:exon
so has part: feature:422305-422424:1:exon
so has part: feature:422501-422604:1:exon
so has part: feature:422823-422978:1:exon
so has part: feature:423071-423121:1:exon
so has part: feature:423218-423668:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:418328-418551:1:exon

position:418551:1
position: 418551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:419449-419639:1:exon

position:419449:1
position: 419449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:419639:1
position: 419639
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:420373-420510:1:exon

position:420373:1
position: 420373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420510:1
position: 420510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:420686-420822:1:exon

position:420686:1
position: 420686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:420822:1
position: 420822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:420909-421099:1:exon

position:420909:1
position: 420909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421099:1
position: 421099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:421280-421383:1:exon

position:421280:1
position: 421280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:421383:1
position: 421383
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:421978-422092:1:exon

position:421978:1
position: 421978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422092:1
position: 422092
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:422305-422424:1:exon

position:422305:1
position: 422305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422424:1
position: 422424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:422501-422604:1:exon

position:422501:1
position: 422501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422604:1
position: 422604
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:422823-422978:1:exon

position:422823:1
position: 422823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:422978:1
position: 422978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:423071-423121:1:exon

position:423071:1
position: 423071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:423121:1
position: 423121
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:423218-423668:1:exon

position:423218:1
position: 423218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PSMD3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PSMD3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 26S proteasome non-ATPase regulatory subunit 3
translation: MKQDGASRRRGDKAKAPPEGPPPAPPDVEMHEEAAPVAPEAAGERQPQRELDAITLEDIKEHVKQLEKAVSGKEPRYVLRALRALPSTSRRLNPNVLHKAIHGFFTSNCTVRDFLLGFLEESMDTEAELQFRPRTGKAASAPLLPEVETYLQLLLVIYLMNSKRYPEAQKVSDDLMQKISSQNRRALDLVVAKCYYYHSRIYEFLNKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYNLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGDKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDGFP
SIO_010081: PSMD3
subclass of: SO_0000673
so part of: PSMD3
location: join(418380..418551,419449..419639,420373..420510,420686..420822,420909..421099,421280..421383,421978..422092,422305..422424,422501..422604,422823..422978,423071..423121,423218..423295)
location: region:418380-423295:1
so has part: feature:418380-418551:1:exon
so has part: feature:419449-419639:1:exon
so has part: feature:420373-420510:1:exon
so has part: feature:420686-420822:1:exon
so has part: feature:420909-421099:1:exon
so has part: feature:421280-421383:1:exon
so has part: feature:421978-422092:1:exon
so has part: feature:422305-422424:1:exon
so has part: feature:422501-422604:1:exon
so has part: feature:422823-422978:1:exon
so has part: feature:423071-423121:1:exon
so has part: feature:423218-423295:1:exon

XP_010411046.1
type: Protein
SIO_000068: ncbiprotein

position:418380:1
position: 418380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:423295:1
position: 423295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:418380-418551:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:419449-419639:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:420373-420510:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:420686-420822:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:420909-421099:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:421280-421383:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:421978-422092:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:422305-422424:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:422501-422604:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:422823-422978:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:423071-423121:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:423218-423295:1:exon

CSF3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CSF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 426007..428444
location: region:426007-428444:1
so has part: feature:426007-428444:1:exon
subclass of: SO_0000010

104697792
type: Gene
SIO_000068: ncbigene

position:426007:1
position: 426007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:428444:1
position: 428444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:426007-428444:1:exon

CSF3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CSF3
product: colony stimulating factor 3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565567.1
SIO_010081: CSF3
subclass of: SO_0000673
so part of: CSF3
location: join(426007..426022,426439..426623,426980..427087,427217..427363,427529..428444)
location: region:426007-428444:1
so has part: feature:426007-426022:1:exon
so has part: feature:426439-426623:1:exon
so has part: feature:426980-427087:1:exon
so has part: feature:427217-427363:1:exon
so has part: feature:427529-428444:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:426007-426022:1:exon

position:426022:1
position: 426022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:426439-426623:1:exon

position:426439:1
position: 426439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:426623:1
position: 426623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:426980-427087:1:exon

position:426980:1
position: 426980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:427087:1
position: 427087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:427217-427363:1:exon

position:427217:1
position: 427217
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:427363:1
position: 427363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:427529-428444:1:exon

position:427529:1
position: 427529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CSF3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CSF3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: granulocyte colony-stimulating factor
translation: MCFLTPAVPTGGLALLLGVLLWAPWQALHGAPLTELSGDQDFQLFLQRNLEFTRKIHGDVAALQRVVCDTFQLCKEEELLLVRQDLDVAQALLEQCHKRTFQAETCFSQIRAGLRIYHGSLATIRDLLPGHAALVETLQLDMANLSSNIQQQMEDLGLATVTYPTENQDPLPTFSSRFRHQVGGFFILANFQRFLETAYRALRHLANL
SIO_010081: CSF3
subclass of: SO_0000673
so part of: CSF3
location: join(426007..426022,426439..426623,426980..427087,427217..427363,427529..427699)
location: region:426007-427699:1
so has part: feature:426007-426022:1:exon
so has part: feature:426439-426623:1:exon
so has part: feature:426980-427087:1:exon
so has part: feature:427217-427363:1:exon
so has part: feature:427529-427699:1:exon

XP_039421501.1
type: Protein
SIO_000068: ncbiprotein

position:427699:1
position: 427699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:426007-426022:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:426439-426623:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:426980-427087:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:427217-427363:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:427529-427699:1:exon

MED24
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: MED24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(430667..448392)
location: region:430667-448392:-1
so has part: feature:430667-448392:-1:exon
subclass of: SO_0000010

104697733
type: Gene
SIO_000068: ncbigene

position:430667:-1
position: 430667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448392:-1
position: 448392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:430667-448392:-1:exon

MED24
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: MED24
product: mediator complex subunit 24
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
transcript id: XM_039565841.1
SIO_010081: MED24
subclass of: SO_0000673
so part of: MED24
location: complement(join(430667..430992,431103..431251,431397..431474,432944..433043,433391..433484,433756..433937,434106..434370,434801..434976,435297..435396,435500..435678,436889..436971,437590..437627,438308..438450,438995..439106,439403..439489,439822..439904,440081..440128,440773..440886,441102..441252,441750..441861,442351..442574,443628..443701,445073..445111,445622..445704,447989..448392))
location: region:430667-448392:-1
so has part: feature:447989-448392:-1:exon
so has part: feature:445622-445704:-1:exon
so has part: feature:445073-445111:-1:exon
so has part: feature:443628-443701:-1:exon
so has part: feature:442351-442574:-1:exon
so has part: feature:441750-441861:-1:exon
so has part: feature:441102-441252:-1:exon
so has part: feature:440773-440886:-1:exon
so has part: feature:440081-440128:-1:exon
so has part: feature:439822-439904:-1:exon
so has part: feature:439403-439489:-1:exon
so has part: feature:438995-439106:-1:exon
so has part: feature:438308-438450:-1:exon
so has part: feature:437590-437627:-1:exon
so has part: feature:436889-436971:-1:exon
so has part: feature:435500-435678:-1:exon
so has part: feature:435297-435396:-1:exon
so has part: feature:434801-434976:-1:exon
so has part: feature:434106-434370:-1:exon
so has part: feature:433756-433937:-1:exon
so has part: feature:433391-433484:-1:exon
so has part: feature:432944-433043:-1:exon
so has part: feature:431397-431474:-1:exon
so has part: feature:431103-431251:-1:exon
so has part: feature:430667-430992:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:447989-448392:-1:exon

position:447989:-1
position: 447989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:445622-445704:-1:exon

position:445622:-1
position: 445622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:445704:-1
position: 445704
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:445073-445111:-1:exon

position:445073:-1
position: 445073
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:445111:-1
position: 445111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:443628-443701:-1:exon

position:443628:-1
position: 443628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:443701:-1
position: 443701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:442351-442574:-1:exon

position:442351:-1
position: 442351
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:442574:-1
position: 442574
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:441750-441861:-1:exon

position:441750:-1
position: 441750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441861:-1
position: 441861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:441102-441252:-1:exon

position:441102:-1
position: 441102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:441252:-1
position: 441252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:440773-440886:-1:exon

position:440773:-1
position: 440773
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440886:-1
position: 440886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:440081-440128:-1:exon

position:440081:-1
position: 440081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:440128:-1
position: 440128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:439822-439904:-1:exon

position:439822:-1
position: 439822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:439904:-1
position: 439904
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:439403-439489:-1:exon

position:439403:-1
position: 439403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:439489:-1
position: 439489
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:438995-439106:-1:exon

position:438995:-1
position: 438995
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:439106:-1
position: 439106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:438308-438450:-1:exon

position:438308:-1
position: 438308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:438450:-1
position: 438450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:437590-437627:-1:exon

position:437590:-1
position: 437590
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:437627:-1
position: 437627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:436889-436971:-1:exon

position:436889:-1
position: 436889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:436971:-1
position: 436971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:435500-435678:-1:exon

position:435500:-1
position: 435500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:435678:-1
position: 435678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:435297-435396:-1:exon

position:435297:-1
position: 435297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:435396:-1
position: 435396
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:434801-434976:-1:exon

position:434801:-1
position: 434801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:434976:-1
position: 434976
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:434106-434370:-1:exon

position:434106:-1
position: 434106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:434370:-1
position: 434370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:433756-433937:-1:exon

position:433756:-1
position: 433756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433937:-1
position: 433937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:433391-433484:-1:exon

position:433391:-1
position: 433391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433484:-1
position: 433484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:432944-433043:-1:exon

position:432944:-1
position: 432944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:433043:-1
position: 433043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:431397-431474:-1:exon

position:431397:-1
position: 431397
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431474:-1
position: 431474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:431103-431251:-1:exon

position:431103:-1
position: 431103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:431251:-1
position: 431251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:430667-430992:-1:exon

position:430992:-1
position: 430992
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

MED24
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: MED24
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: mediator of RNA polymerase II transcription subunit 24
translation: MKVVNLKQAILQAWKERWSDYQWAINMKRFFPRGATWDILNLAEALLEQAMIGPSPNPLILSYLKYAISSQMVSYSTVLTAISKFDDFSRDLCVQSLLEIMDMFCDRLSCHGKAEECISLCRALLSALTWLLRCAAFYAEKVKEPLEQAAAENQLKMCLERLEKVLSSTKNRALIHIAKLEETSSWSTVEQSLVKLGENLNNLGSSPLRSQADDCVSLIKSIPTMLSVHSEQLNKTGFPTVHAVVLLEGTMNLTGETQPLVEQLMMVKRMQRIPSPLFVLEIWKACFVGLIECPEGTEELKWTAFTFLKMPQVLVKLKKYPQGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCNCMSLLLQECSKQGLLSEANMNNLIDKRAADKENSPSLKSAENANIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFVKLNEFTKQITGEISKSGPVRALLFDISFLMLCHVAQTYGSEVILSDSNPPGEVPFFETWMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEVCLSISAAILEILNAWENGVLTFESIQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLYGENTLQFYNERVVIMSSILEHMCADVLQQTATQIKFPSTGMDTIPYWNLLPPKKPIKEVLTGVFTKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHTLRAVELLYAIFCLDMQQLTLTLLGHILPNLLTDSSKWHTLMDPPGKALAKLSVWCALSSYSSHNKGQASARQKKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDSNILSSPNRSMSSSLSASQLHTVSMRDPLNRVLANLFLLISSILGAKTAGTHTQFVQWFMEECVECLEQGSRGSILQFMPFTMVSELVKVSTMSSPKIVLAITDLSLPLGRRVAAKAIAAL
SIO_010081: MED24
subclass of: SO_0000673
so part of: MED24
location: complement(join(430876..430992,431103..431251,431397..431474,432944..433043,433391..433484,433756..433937,434106..434370,434801..434976,435297..435396,435500..435678,436889..436971,437590..437627,438308..438450,438995..439106,439403..439489,439822..439904,440081..440128,440773..440886,441102..441252,441750..441861,442351..442574,443628..443701,445073..445111,445622..445704,447989..448118))
location: region:430876-448118:-1
so has part: feature:447989-448118:-1:exon
so has part: feature:445622-445704:-1:exon
so has part: feature:445073-445111:-1:exon
so has part: feature:443628-443701:-1:exon
so has part: feature:442351-442574:-1:exon
so has part: feature:441750-441861:-1:exon
so has part: feature:441102-441252:-1:exon
so has part: feature:440773-440886:-1:exon
so has part: feature:440081-440128:-1:exon
so has part: feature:439822-439904:-1:exon
so has part: feature:439403-439489:-1:exon
so has part: feature:438995-439106:-1:exon
so has part: feature:438308-438450:-1:exon
so has part: feature:437590-437627:-1:exon
so has part: feature:436889-436971:-1:exon
so has part: feature:435500-435678:-1:exon
so has part: feature:435297-435396:-1:exon
so has part: feature:434801-434976:-1:exon
so has part: feature:434106-434370:-1:exon
so has part: feature:433756-433937:-1:exon
so has part: feature:433391-433484:-1:exon
so has part: feature:432944-433043:-1:exon
so has part: feature:431397-431474:-1:exon
so has part: feature:431103-431251:-1:exon
so has part: feature:430876-430992:-1:exon

XP_039421775.1
type: Protein
SIO_000068: ncbiprotein

position:430876:-1
position: 430876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:448118:-1
position: 448118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:447989-448118:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:445622-445704:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:445073-445111:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:443628-443701:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:442351-442574:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:441750-441861:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:441102-441252:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:440773-440886:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:440081-440128:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:439822-439904:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:439403-439489:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:438995-439106:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:438308-438450:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:437590-437627:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:436889-436971:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:435500-435678:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:435297-435396:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:434801-434976:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:434106-434370:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:433756-433937:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:433391-433484:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:432944-433043:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:431397-431474:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:431103-431251:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:430876-430992:-1:exon

THRA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: THRA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 458478..466326
location: region:458478-466326:1
so has part: feature:458478-466326:1:exon
subclass of: SO_0000010

104697793
type: Gene
SIO_000068: ncbigene

position:458478:1
position: 458478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466326:1
position: 466326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:458478-466326:1:exon

THRA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: THRA
product: thyroid hormone receptor alpha
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 34 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_039565784.1
SIO_010081: THRA
subclass of: SO_0000673
so part of: THRA
location: join(458478..458532,459471..459690,460943..461004,462822..462922,463002..463149,463481..463686,464348..464494,464592..464849,465779..466326)
location: region:458478-466326:1
so has part: feature:458478-458532:1:exon
so has part: feature:459471-459690:1:exon
so has part: feature:460943-461004:1:exon
so has part: feature:462822-462922:1:exon
so has part: feature:463002-463149:1:exon
so has part: feature:463481-463686:1:exon
so has part: feature:464348-464494:1:exon
so has part: feature:464592-464849:1:exon
so has part: feature:465779-466326:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:458478-458532:1:exon

position:458532:1
position: 458532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:459471-459690:1:exon

position:459471:1
position: 459471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:459690:1
position: 459690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:460943-461004:1:exon

position:460943:1
position: 460943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:461004:1
position: 461004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:462822-462922:1:exon

position:462822:1
position: 462822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:462922:1
position: 462922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:463002-463149:1:exon

position:463002:1
position: 463002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463149:1
position: 463149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:463481-463686:1:exon

position:463481:1
position: 463481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:463686:1
position: 463686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:464348-464494:1:exon

position:464348:1
position: 464348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:464494:1
position: 464494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:464592-464849:1:exon

position:464592:1
position: 464592
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:464849:1
position: 464849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:465779-466326:1:exon

position:465779:1
position: 465779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

THRA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: THRA
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: thyroid hormone receptor alpha
translation: MEQKPSTLDPLSEPEDTRWLDGKRKRKSSQCLVKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAKRKLIEENRERRRKEEMIKSLQHRPNPSAEEWELIHVVTEAHRSTNAQGSHWKQKRKFLPEDIGQSPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCXEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDRTGLICVEKIEKCQETYLLAFEHYINYRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFEDQEV
SIO_010081: THRA
subclass of: SO_0000673
so part of: THRA
location: join(459638..459690,460943..461004,462822..462922,463002..463149,463481..463686,464348..464494,464592..464849,465779..466029)
location: region:459638-466029:1
so has part: feature:459638-459690:1:exon
so has part: feature:460943-461004:1:exon
so has part: feature:462822-462922:1:exon
so has part: feature:463002-463149:1:exon
so has part: feature:463481-463686:1:exon
so has part: feature:464348-464494:1:exon
so has part: feature:464592-464849:1:exon
so has part: feature:465779-466029:1:exon

XP_039421718.1
type: Protein
SIO_000068: ncbiprotein

position:459638:1
position: 459638
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:466029:1
position: 466029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:459638-459690:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:460943-461004:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:462822-462922:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:463002-463149:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:463481-463686:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:464348-464494:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:464592-464849:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:465779-466029:1:exon

NR1D1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: NR1D1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(468691..475422)
location: region:468691-475422:-1
so has part: feature:468691-475422:-1:exon
subclass of: SO_0000010

104697794
type: Gene
SIO_000068: ncbigene

position:468691:-1
position: 468691
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:475422:-1
position: 475422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:468691-475422:-1:exon

NR1D1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: NR1D1
product: nuclear receptor subfamily 1 group D member 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 22 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XM_039565783.1
SIO_010081: NR1D1
subclass of: SO_0000673
so part of: NR1D1
location: complement(join(468691..469260,469516..469726,470572..470757,470916..471377,472020..472164,472249..472337,472424..472765,475317..475422))
location: region:468691-475422:-1
so has part: feature:475317-475422:-1:exon
so has part: feature:472424-472765:-1:exon
so has part: feature:472249-472337:-1:exon
so has part: feature:472020-472164:-1:exon
so has part: feature:470916-471377:-1:exon
so has part: feature:470572-470757:-1:exon
so has part: feature:469516-469726:-1:exon
so has part: feature:468691-469260:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:475317-475422:-1:exon

position:475317:-1
position: 475317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:472424-472765:-1:exon

position:472424:-1
position: 472424
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472765:-1
position: 472765
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:472249-472337:-1:exon

position:472249:-1
position: 472249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472337:-1
position: 472337
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:472020-472164:-1:exon

position:472020:-1
position: 472020
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:472164:-1
position: 472164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:470916-471377:-1:exon

position:470916:-1
position: 470916
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:471377:-1
position: 471377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:470572-470757:-1:exon

position:470572:-1
position: 470572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:470757:-1
position: 470757
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:469516-469726:-1:exon

position:469516:-1
position: 469516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:469726:-1
position: 469726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:468691-469260:-1:exon

position:469260:-1
position: 469260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

NR1D1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: NR1D1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: nuclear receptor subfamily 1 group D member 1
translation: MAAPEAGSTGGVISYVGSSGASPTRTSPVSLCSDSSNGSSQSGSQPFPTYFPPSPTGSLQDSRAYGGATLAPHEDGSPSSSSSSSSSTSSSSYGSSVNFPGVQPVPADERRRSSPSKTGSTVTKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIVRINRNRCQQCRFKKCLLVGMSRDAVRFGRIPKREKQRMLAEMQSAMGGMANAPPPMPGPGEGPAAGGGRAPPPAPRRSPPACFSQFPQQLTPPRSPSPGGATEDVIAQVAKAHKEIFIYAHDKLGPPPACDSGLLRWDAPPAWAPGPPEPRLCPAAYPEPPAPRGCPWPRGPKDVLPACPMNSHVPGRSGRSVQEIWEDFSLSFTPAVREVVEFAKHIPGFQALSQHDQVTLLKAGTFEVLMVRFASLFDVKEQTVTFMSRTRYGLEELWAMGMGDLLGAMFDFSEKLSALELSDEELGLFTAVVLVSADRSGMEDTASVEQLQETLLRALRALVLKTRPAETSRFTKLLLKLPDLRTLNNLHSEKLLSFRIDAQ
SIO_010081: NR1D1
subclass of: SO_0000673
so part of: NR1D1
location: complement(join(469061..469260,469516..469726,470572..470757,470916..471377,472020..472164,472249..472337,472424..472765,475317..475344))
location: region:469061-475344:-1
so has part: feature:475317-475344:-1:exon
so has part: feature:472424-472765:-1:exon
so has part: feature:472249-472337:-1:exon
so has part: feature:472020-472164:-1:exon
so has part: feature:470916-471377:-1:exon
so has part: feature:470572-470757:-1:exon
so has part: feature:469516-469726:-1:exon
so has part: feature:469061-469260:-1:exon

XP_039421717.1
type: Protein
SIO_000068: ncbiprotein

position:469061:-1
position: 469061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:475344:-1
position: 475344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:475317-475344:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:472424-472765:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:472249-472337:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:472020-472164:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:470916-471377:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:470572-470757:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:469516-469726:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:469061-469260:-1:exon

MSL1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: MSL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 483598..490158
location: region:483598-490158:1
so has part: feature:483598-490158:1:exon
subclass of: SO_0000010

104697734
type: Gene
SIO_000068: ncbigene

position:483598:1
position: 483598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:490158:1
position: 490158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483598-490158:1:exon

MSL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: MSL1
product: MSL complex subunit 1
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565857.1
SIO_010081: MSL1
subclass of: SO_0000673
so part of: MSL1
location: join(483598..483777,486424..486647,486979..487360,488021..488085,488301..488368,488555..488679,488760..488832,488970..490158)
location: region:483598-490158:1
so has part: feature:483598-483777:1:exon
so has part: feature:486424-486647:1:exon
so has part: feature:486979-487360:1:exon
so has part: feature:488021-488085:1:exon
so has part: feature:488301-488368:1:exon
so has part: feature:488555-488679:1:exon
so has part: feature:488760-488832:1:exon
so has part: feature:488970-490158:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:483598-483777:1:exon

position:483777:1
position: 483777
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:486424-486647:1:exon

position:486424:1
position: 486424
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:486647:1
position: 486647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:486979-487360:1:exon

position:486979:1
position: 486979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:487360:1
position: 487360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:488021-488085:1:exon

position:488021:1
position: 488021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:488085:1
position: 488085
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:488301-488368:1:exon

position:488301:1
position: 488301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:488368:1
position: 488368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:488555-488679:1:exon

position:488555:1
position: 488555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:488679:1
position: 488679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:488760-488832:1:exon

position:488760:1
position: 488760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:488832:1
position: 488832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:488970-490158:1:exon

position:488970:1
position: 488970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

MSL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: MSL1
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: male-specific lethal 1 homolog
translation: MGAGGGSPGQAACLRQILLLQLDLIEQQQQQLQAKERQIEELRAERDTLLARIERMERRVQLVKKDSEREKHRIFQGFEVDEKPEAEACEKLPLECPQDLLEPPPTLQPKHFPYGRNGKGHKRKPTFGSAERKTPVKKLVSDFSKVKSKTPKHSPGKEESGGSLAETVCKRELRSQETPEKPRSLLEXPLRASAPPKGPSTHPKEKGFVSEADDLPYLSTTEMYLCRWHQPPPSPLPLREPSPKKEETVAIPSWRDHVVEPLRDPNPSDLLENLDDSVFSKRHAKLELDEKRRKRWDIQRIREQRILQRLQLRMYKRKGIQESEPEVTSFFPEPDDVESLLITPYLPVVAFGRPLPKLTPQNFELPWLDERSRCRLEVQKKQTPHRTCRK
SIO_010081: MSL1
subclass of: SO_0000673
so part of: MSL1
location: join(483634..483777,486424..486647,486979..487360,488021..488085,488301..488368,488555..488679,488760..488832,488970..489060)
location: region:483634-489060:1
so has part: feature:483634-483777:1:exon
so has part: feature:486424-486647:1:exon
so has part: feature:486979-487360:1:exon
so has part: feature:488021-488085:1:exon
so has part: feature:488301-488368:1:exon
so has part: feature:488555-488679:1:exon
so has part: feature:488760-488832:1:exon
so has part: feature:488970-489060:1:exon

XP_039421791.1
type: Protein
SIO_000068: ncbiprotein

position:483634:1
position: 483634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:489060:1
position: 489060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:483634-483777:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:486424-486647:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:486979-487360:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:488021-488085:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:488301-488368:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:488555-488679:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:488760-488832:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:488970-489060:1:exon

CASC3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CASC3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 490531..502126
location: region:490531-502126:1
so has part: feature:490531-502126:1:exon
subclass of: SO_0000010

104697795
type: Gene
SIO_000068: ncbigene

position:490531:1
position: 490531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:502126:1
position: 502126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490531-502126:1:exon

CASC3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CASC3
product: CASC3 exon junction complex subunit
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
transcript id: XM_039565808.1
SIO_010081: CASC3
subclass of: SO_0000673
so part of: CASC3
location: join(490531..490821,492619..492646,492944..492981,494377..494535,494612..494763,495136..495312,495507..496192,497689..497753,497949..498063,498612..498710,499296..499510,500731..500853,501683..502126)
location: region:490531-502126:1
so has part: feature:490531-490821:1:exon
so has part: feature:492619-492646:1:exon
so has part: feature:492944-492981:1:exon
so has part: feature:494377-494535:1:exon
so has part: feature:494612-494763:1:exon
so has part: feature:495136-495312:1:exon
so has part: feature:495507-496192:1:exon
so has part: feature:497689-497753:1:exon
so has part: feature:497949-498063:1:exon
so has part: feature:498612-498710:1:exon
so has part: feature:499296-499510:1:exon
so has part: feature:500731-500853:1:exon
so has part: feature:501683-502126:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:490531-490821:1:exon

position:490821:1
position: 490821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:492619-492646:1:exon

position:492619:1
position: 492619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492646:1
position: 492646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:492944-492981:1:exon

position:492944:1
position: 492944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:492981:1
position: 492981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:494377-494535:1:exon

position:494377:1
position: 494377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494535:1
position: 494535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:494612-494763:1:exon

position:494612:1
position: 494612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:494763:1
position: 494763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:495136-495312:1:exon

position:495136:1
position: 495136
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:495312:1
position: 495312
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:495507-496192:1:exon

position:495507:1
position: 495507
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:496192:1
position: 496192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:497689-497753:1:exon

position:497689:1
position: 497689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:497753:1
position: 497753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:497949-498063:1:exon

position:497949:1
position: 497949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498063:1
position: 498063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:498612-498710:1:exon

position:498612:1
position: 498612
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:498710:1
position: 498710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:499296-499510:1:exon

position:499296:1
position: 499296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:499510:1
position: 499510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:500731-500853:1:exon

position:500731:1
position: 500731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:500853:1
position: 500853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:501683-502126:1:exon

position:501683:1
position: 501683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CASC3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CASC3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: protein CASC3
translation: MADRRRQRASQDSEDSEGSAASDSAGSVPGSPPLRPLPLGLRIPIPLRLAPPTAPPAARRRRGPRRWAAGPRGRERRWGGGKSAAESECESEDGIEGDAVLSDYESAEDSEAEEEDYSEEESSKVELKQDSNDSCESAARGEKGSEKADPKGAVTGERQSGDGQESTEPVEKKVGKKVPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPPKPPRHQGAKSPSAPPRSFNSRSSASTGRMPPARNYPRMGGYKETRPGYRASEATVPHRNGEQAKQESSYRGKRTEQSPSRDTSPELEVAHVHGSPGKEEGALENQAMAADAAQPPPDRPVEKKSYSRARRTRVKAGEAGKLAEEAPASEGVAPVIPKPTPAESSPPPAKSNWESPVESSVDGLEQEMTQMNLTEQNWSPGQSQFIPPRELRGIPNHMHVGTGPPPQFNRMEEMAVQGGRVKRYSSQRQRPPVPEPAPPMHISIMEGHYYDPLQFQGPIYTHGENPAPLPPQGMIVQPEMHLPHPGLHPHQTPPAMANPGLYPPPVSMPPGQPPPQQLLTPTYFSAPGVMNFGNPGYPYPPGALPPPPPPHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPEDSKGEKSKERSNT
SIO_010081: CASC3
subclass of: SO_0000673
so part of: CASC3
location: join(490555..490821,492619..492646,492944..492981,494377..494535,494612..494763,495136..495312,495507..496192,497689..497753,497949..498063,498612..498710,499296..499510,500731..500853,501683..501724)
location: region:490555-501724:1
so has part: feature:490555-490821:1:exon
so has part: feature:492619-492646:1:exon
so has part: feature:492944-492981:1:exon
so has part: feature:494377-494535:1:exon
so has part: feature:494612-494763:1:exon
so has part: feature:495136-495312:1:exon
so has part: feature:495507-496192:1:exon
so has part: feature:497689-497753:1:exon
so has part: feature:497949-498063:1:exon
so has part: feature:498612-498710:1:exon
so has part: feature:499296-499510:1:exon
so has part: feature:500731-500853:1:exon
so has part: feature:501683-501724:1:exon

XP_039421742.1
type: Protein
SIO_000068: ncbiprotein

position:490555:1
position: 490555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:501724:1
position: 501724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:490555-490821:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:492619-492646:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:492944-492981:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:494377-494535:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:494612-494763:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:495136-495312:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:495507-496192:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:497689-497753:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:497949-498063:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:498612-498710:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:499296-499510:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:500731-500853:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:501683-501724:1:exon

RAPGEFL1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RAPGEFL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 506378..514332
location: region:506378-514332:1
so has part: feature:506378-514332:1:exon
subclass of: SO_0000010

104697735
type: Gene
SIO_000068: ncbigene

position:506378:1
position: 506378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:514332:1
position: 514332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:506378-514332:1:exon

RAPGEFL1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RAPGEFL1
product: Rap guanine nucleotide exchange factor like 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XM_039565862.1
SIO_010081: RAPGEFL1
subclass of: SO_0000673
so part of: RAPGEFL1
location: join(506378..506878,508823..508901,509364..509514,509586..509683,510252..510364,510546..510713,510801..510898,511028..511150,511235..511413,511491..511581,512318..512368,512579..512666,512755..512819,513104..513158,513809..514332)
location: region:506378-514332:1
so has part: feature:506378-506878:1:exon
so has part: feature:508823-508901:1:exon
so has part: feature:509364-509514:1:exon
so has part: feature:509586-509683:1:exon
so has part: feature:510252-510364:1:exon
so has part: feature:510546-510713:1:exon
so has part: feature:510801-510898:1:exon
so has part: feature:511028-511150:1:exon
so has part: feature:511235-511413:1:exon
so has part: feature:511491-511581:1:exon
so has part: feature:512318-512368:1:exon
so has part: feature:512579-512666:1:exon
so has part: feature:512755-512819:1:exon
so has part: feature:513104-513158:1:exon
so has part: feature:513809-514332:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:506378-506878:1:exon

position:506878:1
position: 506878
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:508823-508901:1:exon

position:508823:1
position: 508823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:508901:1
position: 508901
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:509364-509514:1:exon

position:509364:1
position: 509364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509514:1
position: 509514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:509586-509683:1:exon

position:509586:1
position: 509586
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:509683:1
position: 509683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:510252-510364:1:exon

position:510252:1
position: 510252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510364:1
position: 510364
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:510546-510713:1:exon

position:510546:1
position: 510546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510713:1
position: 510713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:510801-510898:1:exon

position:510801:1
position: 510801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:510898:1
position: 510898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:511028-511150:1:exon

position:511028:1
position: 511028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511150:1
position: 511150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:511235-511413:1:exon

position:511235:1
position: 511235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511413:1
position: 511413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:511491-511581:1:exon

position:511491:1
position: 511491
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:511581:1
position: 511581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:512318-512368:1:exon

position:512318:1
position: 512318
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512368:1
position: 512368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:512579-512666:1:exon

position:512579:1
position: 512579
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512666:1
position: 512666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:512755-512819:1:exon

position:512755:1
position: 512755
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:512819:1
position: 512819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:513104-513158:1:exon

position:513104:1
position: 513104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513158:1
position: 513158
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:513809-514332:1:exon

position:513809:1
position: 513809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RAPGEFL1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RAPGEFL1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: rap guanine nucleotide exchange factor-like 1
translation: MKPLEKLLKKPGSHLPVRPAVPPGQVPGPGSVPAPRRQSLSRPPASPEEPAGPAGPVPGGEGRWLELRPPEAPLRSPEDPSPCGDRDRDRDRDRDREPPSPEPPPAARCCCGCGCAPAAPAPPERLLSALLDRLPAAAHGRGCGAESLLDDIVLTHSLFLPTERFLQQLHQHFVLAAGSPPERWEEGSGLQRKRAVLAVLLHFLETYKGLLQEEESAGKVIKELYLLIMKDTSLYHELEDEIIKLHQLVETVELKVADETPPPNKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILASVTEKLQYSEEQSARGDALILVTMASSGEKAVLQPSEECVFTTLGINSHLFACTRDTFDSLVPLPEEIQVVPGDTEIHRAEPEDVANHLTAFHWELFRCIHELEFVDYVFHGERGRRETANLELLLQRCSEVQHWVGTELLLCEGLGKRAHLLKKLIKIAAICKQNQDMLSFYAIVIGLNNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKTYREVLAKMKPPLIPFVPLILKDLTFLHEGSKTLLDGLVNVEKLHCIAEKVRTVRKYRSRPLCLELEASPAQLQTKAYVRQLRVIDNQNLLFELSYKLEPGSQ
SIO_010081: RAPGEFL1
subclass of: SO_0000673
so part of: RAPGEFL1
location: join(506443..506878,508823..508901,509364..509514,509586..509683,510252..510364,510546..510713,510801..510898,511028..511150,511235..511413,511491..511581,512318..512368,512579..512666,512755..512819,513104..513158,513809..513933)
location: region:506443-513933:1
so has part: feature:506443-506878:1:exon
so has part: feature:508823-508901:1:exon
so has part: feature:509364-509514:1:exon
so has part: feature:509586-509683:1:exon
so has part: feature:510252-510364:1:exon
so has part: feature:510546-510713:1:exon
so has part: feature:510801-510898:1:exon
so has part: feature:511028-511150:1:exon
so has part: feature:511235-511413:1:exon
so has part: feature:511491-511581:1:exon
so has part: feature:512318-512368:1:exon
so has part: feature:512579-512666:1:exon
so has part: feature:512755-512819:1:exon
so has part: feature:513104-513158:1:exon
so has part: feature:513809-513933:1:exon

XP_039421796.1
type: Protein
SIO_000068: ncbiprotein

position:506443:1
position: 506443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:513933:1
position: 513933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:506443-506878:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:508823-508901:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:509364-509514:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:509586-509683:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:510252-510364:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:510546-510713:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:510801-510898:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:511028-511150:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:511235-511413:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:511491-511581:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:512318-512368:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:512579-512666:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:512755-512819:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:513104-513158:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:513809-513933:1:exon

WIPF2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: WIPF2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 515079..526378
location: region:515079-526378:1
so has part: feature:515079-526378:1:exon
subclass of: SO_0000010

120411365
type: Gene
SIO_000068: ncbigene

position:515079:1
position: 515079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:526378:1
position: 526378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:515079-526378:1:exon

WIPF2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: WIPF2
product: WAS/WASL interacting protein family member 2
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039565779.1
SIO_010081: WIPF2
subclass of: SO_0000673
so part of: WIPF2
location: join(515079..521228,521417..521549,521688..521807,522216..522866,523429..523431,523957..524166,524276..524377,525088..526378)
location: region:515079-526378:1
so has part: feature:515079-521228:1:exon
so has part: feature:521417-521549:1:exon
so has part: feature:521688-521807:1:exon
so has part: feature:522216-522866:1:exon
so has part: feature:523429-523431:1:exon
so has part: feature:523957-524166:1:exon
so has part: feature:524276-524377:1:exon
so has part: feature:525088-526378:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:515079-521228:1:exon

position:521228:1
position: 521228
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:521417-521549:1:exon

position:521417:1
position: 521417
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521549:1
position: 521549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:521688-521807:1:exon

position:521688:1
position: 521688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:521807:1
position: 521807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:522216-522866:1:exon

position:522216:1
position: 522216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:522866:1
position: 522866
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:523429-523431:1:exon

position:523429:1
position: 523429
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:523431:1
position: 523431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:523957-524166:1:exon

position:523957:1
position: 523957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524166:1
position: 524166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:524276-524377:1:exon

position:524276:1
position: 524276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:524377:1
position: 524377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:525088-526378:1:exon

position:525088:1
position: 525088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

WIPF2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: WIPF2
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: WAS/WASL-interacting protein family member 2
translation: MPIPPPPPPPPGPPPPPTLSQANTEPPKLSREEQRGRGALLQDICKGTKLRKVTQINDRSAPILEKPKGSGSSSYGSSSAAIQPKGGLFQGGVPKLRPVGAKDSSDSSTKQTLQVPGARAAAPRPPVPASNSRPQDDADSSRGSPPELPRTQRPSLPDLSRPGTAGGTGMKHSSSAPPPPPPGRRAAAPPAPPPAHAKASPYNREKPLPPTPGQRLPGSRDGPPAPPPIKPPPSPVSLRSGAQGQSLAPPPPPYRQPPVSXNGPSSPSSESAPELPQRHNSLHRKAPGPLRGLAPPPPTAASPSLQSSRPPPPARDPPSRGAAPPPPPPPMLRNGGRDAPPPPPPYRLHGPTEPPSRGKPPPPPTRTPAGPPPPPPPVRNGHRDSISTVRAFLDDFESKYSFHPVEDFPAPEEYKYFQRIYPSKTNRATRGAPPLPPIPR
SIO_010081: WIPF2
subclass of: SO_0000673
so part of: WIPF2
location: join(521166..521228,521417..521549,521688..521807,522216..522866,523429..523431,523957..524166,524276..524377,525088..525128)
location: region:521166-525128:1
so has part: feature:521166-521228:1:exon
so has part: feature:521417-521549:1:exon
so has part: feature:521688-521807:1:exon
so has part: feature:522216-522866:1:exon
so has part: feature:523429-523431:1:exon
so has part: feature:523957-524166:1:exon
so has part: feature:524276-524377:1:exon
so has part: feature:525088-525128:1:exon

XP_039421713.1
type: Protein
SIO_000068: ncbiprotein

position:521166:1
position: 521166
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:525128:1
position: 525128
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:521166-521228:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:521417-521549:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:521688-521807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:522216-522866:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:523429-523431:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:523957-524166:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:524276-524377:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:525088-525128:1:exon

CDC6
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CDC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 526735..530858
location: region:526735-530858:1
so has part: feature:526735-530858:1:exon
subclass of: SO_0000010

120411364
type: Gene
SIO_000068: ncbigene

position:526735:1
position: 526735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:530858:1
position: 530858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526735-530858:1:exon

CDC6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CDC6
product: cell division cycle 6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XM_039565778.1
SIO_010081: CDC6
subclass of: SO_0000673
so part of: CDC6
location: join(526735..527012,527260..527511,527762..527980,528216..528415,528498..528661,528798..528904,529044..529183,529268..529368,529503..529567,529713..529912,530022..530162,530289..530858)
location: region:526735-530858:1
so has part: feature:526735-527012:1:exon
so has part: feature:527260-527511:1:exon
so has part: feature:527762-527980:1:exon
so has part: feature:528216-528415:1:exon
so has part: feature:528498-528661:1:exon
so has part: feature:528798-528904:1:exon
so has part: feature:529044-529183:1:exon
so has part: feature:529268-529368:1:exon
so has part: feature:529503-529567:1:exon
so has part: feature:529713-529912:1:exon
so has part: feature:530022-530162:1:exon
so has part: feature:530289-530858:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:526735-527012:1:exon

position:527012:1
position: 527012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:527260-527511:1:exon

position:527260:1
position: 527260
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527511:1
position: 527511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:527762-527980:1:exon

position:527762:1
position: 527762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:527980:1
position: 527980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:528216-528415:1:exon

position:528216:1
position: 528216
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528415:1
position: 528415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:528498-528661:1:exon

position:528498:1
position: 528498
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528661:1
position: 528661
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:528798-528904:1:exon

position:528798:1
position: 528798
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:528904:1
position: 528904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:529044-529183:1:exon

position:529044:1
position: 529044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:529183:1
position: 529183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:529268-529368:1:exon

position:529268:1
position: 529268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:529368:1
position: 529368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:529503-529567:1:exon

position:529503:1
position: 529503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:529567:1
position: 529567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:529713-529912:1:exon

position:529713:1
position: 529713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:529912:1
position: 529912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:530022-530162:1:exon

position:530022:1
position: 530022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:530162:1
position: 530162
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:530289-530858:1:exon

position:530289:1
position: 530289
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CDC6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CDC6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell division control protein 6 homolog
translation: MPRVPRSAPSAVPRVRSLIGCAVAALPPAAAIGCGGGGAANGGKGAGPDGPGGGNCGTGVDLAREAPAMASKSPQSQPTIGFPRTRSARRLAAPPAKSDPDAPALRPSPRSKASGPADPGQATPDTRSGRVTAQPLSPKVQPLSPRKRLGDDNLCNVPHALPGSPAKRSKENRGRRLLFGDPSASPEQPKGPGPSPRSGGPETPRSSGLGGQQRHTRLFRQEGTCYQQAKQVLHAAVPDRLQGRERETGILRQFLREHVLRRRPGSLYVSGAPGTGKTACLSRVLLDCKDELAGSRTVVLNCMALGSPQSVFPALAQQLGLPVATGRERIRSLEKHLMAQGPMVLLVLDELDQLESKGQDVLYTLFEWPQLPSSRLVLVGLANALDLTDRSLARLGAHPGGSPQLLHFPPYTKEQLTHILQERLGQVAGDPVLDSAALQFCARKVSAVSGDARKALDVCRRAVEVVELEVRGQTLLKPLPGGESPVSPVPKRVGLLHISQVLSEVFGDRLAAGSRGAQDTFPLQQKVLLCSLLLLARHSHAREVTLGKLHDTYSQVCRRQQLPTVDQAECLSLVTLLESRGVLELKKAKEARLAKVSLTLEEAALEHRLQDTALVGSILAQGLH
SIO_010081: CDC6
subclass of: SO_0000673
so part of: CDC6
location: join(526817..527012,527260..527511,527762..527980,528216..528415,528498..528661,528798..528904,529044..529183,529268..529368,529503..529567,529713..529912,530022..530162,530289..530378)
location: region:526817-530378:1
so has part: feature:526817-527012:1:exon
so has part: feature:527260-527511:1:exon
so has part: feature:527762-527980:1:exon
so has part: feature:528216-528415:1:exon
so has part: feature:528498-528661:1:exon
so has part: feature:528798-528904:1:exon
so has part: feature:529044-529183:1:exon
so has part: feature:529268-529368:1:exon
so has part: feature:529503-529567:1:exon
so has part: feature:529713-529912:1:exon
so has part: feature:530022-530162:1:exon
so has part: feature:530289-530378:1:exon

XP_039421712.1
type: Protein
SIO_000068: ncbiprotein

position:526817:1
position: 526817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:530378:1
position: 530378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:526817-527012:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:527260-527511:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:527762-527980:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:528216-528415:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:528498-528661:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:528798-528904:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:529044-529183:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:529268-529368:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:529503-529567:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:529713-529912:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:530022-530162:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:530289-530378:1:exon

RARA
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RARA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 534097..543344
location: region:534097-543344:1
so has part: feature:534097-543344:1:exon
subclass of: SO_0000010

120411383
type: Gene
SIO_000068: ncbigene

position:534097:1
position: 534097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:543344:1
position: 543344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534097-543344:1:exon

RARA
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RARA
product: retinoic acid receptor alpha
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565873.1
SIO_010081: RARA
subclass of: SO_0000673
so part of: RARA
location: join(534097..534338,541052..543344)
location: region:534097-543344:1
so has part: feature:534097-534338:1:exon
so has part: feature:541052-543344:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:534097-534338:1:exon

position:534338:1
position: 534338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:541052-543344:1:exon

position:541052:1
position: 541052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RARA
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RARA
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: retinoic acid receptor alpha
translation: MTRNGRGRRSVNPPGNPHPPLPHPSKPGRTPPSSFPVPPPCSHHRELPGFKDFGVGVSVSSTAGPAPTVRTARQQGTRGPHALLVPRPPHLRAPCAGDPAMASNSSSCPTPGGGHLNGYPVPPYAFFFPHMLGGLSPPSTLAGIQHQLPVSGYSTPSPASEYCVPAGAGGTPSAGGVCGDPSGPGSVPSMGCGCQSQAAAPALVRNVPQGSGAGEVGSPCSPPHLWGADFGGFMMQALGAAPHVFI
SIO_010081: RARA
subclass of: SO_0000673
so part of: RARA
location: join(534157..534338,541052..541610)
location: region:534157-541610:1
so has part: feature:534157-534338:1:exon
so has part: feature:541052-541610:1:exon

XP_039421807.1
type: Protein
SIO_000068: ncbiprotein

position:534157:1
position: 534157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:541610:1
position: 541610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:534157-534338:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:541052-541610:1:exon

TOP2A
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TOP2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(569069..577330)
location: region:569069-577330:-1
so has part: feature:569069-577330:-1:exon
subclass of: SO_0000010

104697736
type: Gene
SIO_000068: ncbigene

position:569069:-1
position: 569069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:577330:-1
position: 577330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:569069-577330:-1:exon

TOP2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TOP2A
product: DNA topoisomerase II alpha
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
transcript id: XM_039565568.1
SIO_010081: TOP2A
subclass of: SO_0000673
so part of: TOP2A
location: complement(join(569069..569191,569656..569748,570482..570591,570967..571072,571164..571274,571729..571854,572251..572408,572684..572822,572932..573069,573511..573612,573798..573971,574177..574389,574687..574784,575410..575555,576005..576068,576496..576586,576730..576873,577233..577330))
location: region:569069-577330:-1
so has part: feature:577233-577330:-1:exon
so has part: feature:576730-576873:-1:exon
so has part: feature:576496-576586:-1:exon
so has part: feature:576005-576068:-1:exon
so has part: feature:575410-575555:-1:exon
so has part: feature:574687-574784:-1:exon
so has part: feature:574177-574389:-1:exon
so has part: feature:573798-573971:-1:exon
so has part: feature:573511-573612:-1:exon
so has part: feature:572932-573069:-1:exon
so has part: feature:572684-572822:-1:exon
so has part: feature:572251-572408:-1:exon
so has part: feature:571729-571854:-1:exon
so has part: feature:571164-571274:-1:exon
so has part: feature:570967-571072:-1:exon
so has part: feature:570482-570591:-1:exon
so has part: feature:569656-569748:-1:exon
so has part: feature:569069-569191:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:577233-577330:-1:exon

position:577233:-1
position: 577233
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:576730-576873:-1:exon

position:576730:-1
position: 576730
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576873:-1
position: 576873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:576496-576586:-1:exon

position:576496:-1
position: 576496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576586:-1
position: 576586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:576005-576068:-1:exon

position:576005:-1
position: 576005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:576068:-1
position: 576068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:575410-575555:-1:exon

position:575410:-1
position: 575410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:575555:-1
position: 575555
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:574687-574784:-1:exon

position:574687:-1
position: 574687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:574784:-1
position: 574784
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:574177-574389:-1:exon

position:574177:-1
position: 574177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:574389:-1
position: 574389
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:573798-573971:-1:exon

position:573798:-1
position: 573798
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573971:-1
position: 573971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:573511-573612:-1:exon

position:573511:-1
position: 573511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573612:-1
position: 573612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:572932-573069:-1:exon

position:572932:-1
position: 572932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:573069:-1
position: 573069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:572684-572822:-1:exon

position:572684:-1
position: 572684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572822:-1
position: 572822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:572251-572408:-1:exon

position:572251:-1
position: 572251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:572408:-1
position: 572408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:571729-571854:-1:exon

position:571729:-1
position: 571729
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571854:-1
position: 571854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:571164-571274:-1:exon

position:571164:-1
position: 571164
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571274:-1
position: 571274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:570967-571072:-1:exon

position:570967:-1
position: 570967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:571072:-1
position: 571072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:570482-570591:-1:exon

position:570482:-1
position: 570482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:570591:-1
position: 570591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:569656-569748:-1:exon

position:569656:-1
position: 569656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:569748:-1
position: 569748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:569069-569191:-1:exon

position:569191:-1
position: 569191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TOP2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TOP2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: DNA topoisomerase 2-alpha
translation: MELSQSPSPLRPADENARVNKPDGPKKLSVEHIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEGIGLNCRDVTFVPGLYKIFDEILVNAADNKQRDKNMSCIKITIDVENNTISVWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDNEKKVTGGRNGYGAKLCNIFSTKFTVETGCHEYKKLFKQTWTDNMGKAGEMKLKYFDGDDYTCVTFQPDLAKFKMTILDKDIVALMSRRAYDIAGSTKDVKVFLNGQRLPVKGFRSYVDLYLKDKVDETGNALKVIHEEVNSRWEVCLTLSEKGFQQVSFVNSIATTKGGRHVDYVADQLVTKLIDVVKKKNKNGVGVKPFQVKNHMWIFVNALIENPTFDSQTKENMTLQAKNFGSTCKLSEKFIKGAVGCGIVESILNWVKFKAQNQLNKKCSAVKHSKIKGVPKLDDANDAGSKNSLDCTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIMENAEINNIIKIVGLQYKKNYEDQESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHNFLEEFITPIIKASKNKEEIAFYSIPEFEEWKSSTQNYNSWKIKYYKGLGTSTSKEAKEYFADMAKHRIGFKYSGPEDDAAITLAFSKKKIEERKEWLTNFMEDRRQRKLHGLPEEYLYGKNTDYLTYNDFINKELVLFSNSDNERSIPSLVDGK
SIO_010081: TOP2A
subclass of: SO_0000673
so part of: TOP2A
location: complement(join(569069..569191,569656..569748,570482..570591,570967..571072,571164..571274,571729..571854,572251..572408,572684..572822,572932..573069,573511..573612,573798..573971,574177..574389,574687..574784,575410..575555,576005..576068,576496..576586,576730..576873,577233..577265))
location: region:569069-577265:-1
so has part: feature:577233-577265:-1:exon
so has part: feature:576730-576873:-1:exon
so has part: feature:576496-576586:-1:exon
so has part: feature:576005-576068:-1:exon
so has part: feature:575410-575555:-1:exon
so has part: feature:574687-574784:-1:exon
so has part: feature:574177-574389:-1:exon
so has part: feature:573798-573971:-1:exon
so has part: feature:573511-573612:-1:exon
so has part: feature:572932-573069:-1:exon
so has part: feature:572684-572822:-1:exon
so has part: feature:572251-572408:-1:exon
so has part: feature:571729-571854:-1:exon
so has part: feature:571164-571274:-1:exon
so has part: feature:570967-571072:-1:exon
so has part: feature:570482-570591:-1:exon
so has part: feature:569656-569748:-1:exon
so has part: feature:569069-569191:-1:exon

XP_039421502.1
type: Protein
SIO_000068: ncbiprotein

position:577265:-1
position: 577265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:577233-577265:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:576730-576873:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:576496-576586:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:576005-576068:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:575410-575555:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:574687-574784:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:574177-574389:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:573798-573971:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:573511-573612:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:572932-573069:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:572684-572822:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:572251-572408:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:571729-571854:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:571164-571274:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:570967-571072:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:570482-570591:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:569656-569748:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:569069-569191:-1:exon

LOC104697797
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697797
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(578135..586142)
location: region:578135-586142:-1
so has part: feature:578135-586142:-1:exon
subclass of: SO_0000010

104697797
type: Gene
SIO_000068: ncbigene

position:578135:-1
position: 578135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:586142:-1
position: 586142
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:578135-586142:-1:exon

LOC104697797
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697797
product: collagen alpha-1(III) chain-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_039565564.1
SIO_010081: LOC104697797
subclass of: SO_0000673
so part of: LOC104697797
location: complement(join(578135..578624,578766..578878,579079..579273,579434..579502,579687..579749,579873..579878,580064..580198,580284..580333,580564..580591,580706..580747,580851..580931,581090..581134,581325..581426,581723..581749,581946..581999,582074..582193,582412..582774,582979..583194,583434..583499,583583..583645,583823..583891,584245..584384,584606..586142))
location: region:578135-586142:-1
so has part: feature:584606-586142:-1:exon
so has part: feature:584245-584384:-1:exon
so has part: feature:583823-583891:-1:exon
so has part: feature:583583-583645:-1:exon
so has part: feature:583434-583499:-1:exon
so has part: feature:582979-583194:-1:exon
so has part: feature:582412-582774:-1:exon
so has part: feature:582074-582193:-1:exon
so has part: feature:581946-581999:-1:exon
so has part: feature:581723-581749:-1:exon
so has part: feature:581325-581426:-1:exon
so has part: feature:581090-581134:-1:exon
so has part: feature:580851-580931:-1:exon
so has part: feature:580706-580747:-1:exon
so has part: feature:580564-580591:-1:exon
so has part: feature:580284-580333:-1:exon
so has part: feature:580064-580198:-1:exon
so has part: feature:579873-579878:-1:exon
so has part: feature:579687-579749:-1:exon
so has part: feature:579434-579502:-1:exon
so has part: feature:579079-579273:-1:exon
so has part: feature:578766-578878:-1:exon
so has part: feature:578135-578624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:584606-586142:-1:exon

position:584606:-1
position: 584606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:584245-584384:-1:exon

position:584245:-1
position: 584245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:584384:-1
position: 584384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:583823-583891:-1:exon

position:583823:-1
position: 583823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583891:-1
position: 583891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:583583-583645:-1:exon

position:583583:-1
position: 583583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583645:-1
position: 583645
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:583434-583499:-1:exon

position:583434:-1
position: 583434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583499:-1
position: 583499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:582979-583194:-1:exon

position:582979:-1
position: 582979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:583194:-1
position: 583194
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:582412-582774:-1:exon

position:582412:-1
position: 582412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582774:-1
position: 582774
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:582074-582193:-1:exon

position:582074:-1
position: 582074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:582193:-1
position: 582193
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:581946-581999:-1:exon

position:581946:-1
position: 581946
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581999:-1
position: 581999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:581723-581749:-1:exon

position:581723:-1
position: 581723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581749:-1
position: 581749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:581325-581426:-1:exon

position:581325:-1
position: 581325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581426:-1
position: 581426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:581090-581134:-1:exon

position:581090:-1
position: 581090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581134:-1
position: 581134
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:580851-580931:-1:exon

position:580851:-1
position: 580851
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580931:-1
position: 580931
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:580706-580747:-1:exon

position:580706:-1
position: 580706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580747:-1
position: 580747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:580564-580591:-1:exon

position:580564:-1
position: 580564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580591:-1
position: 580591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:580284-580333:-1:exon

position:580284:-1
position: 580284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580333:-1
position: 580333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:580064-580198:-1:exon

position:580064:-1
position: 580064
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:580198:-1
position: 580198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:579873-579878:-1:exon

position:579873:-1
position: 579873
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579878:-1
position: 579878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:579687-579749:-1:exon

position:579687:-1
position: 579687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579749:-1
position: 579749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:579434-579502:-1:exon

position:579434:-1
position: 579434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579502:-1
position: 579502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:579079-579273:-1:exon

position:579079:-1
position: 579079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:579273:-1
position: 579273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:578766-578878:-1:exon

position:578766:-1
position: 578766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:578878:-1
position: 578878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:578135-578624:-1:exon

position:578624:-1
position: 578624
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104697797
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697797
product: collagen alpha-1(III) chain-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XM_039565563.1
SIO_010081: LOC104697797
subclass of: SO_0000673
so part of: LOC104697797
location: complement(join(578135..578624,578766..578878,579079..579273,579434..579502,579687..579749,579873..579935,580064..580198,580284..580333,580564..580591,580706..580747,580851..580931,581090..581134,581325..581426,581723..581749,581946..581999,582074..582193,582412..582774,582979..583194,583434..583499,583583..583645,583823..583891,584245..584384,584606..586142))
location: region:578135-586142:-1
so has part: feature:584606-586142:-1:exon
so has part: feature:584245-584384:-1:exon
so has part: feature:583823-583891:-1:exon
so has part: feature:583583-583645:-1:exon
so has part: feature:583434-583499:-1:exon
so has part: feature:582979-583194:-1:exon
so has part: feature:582412-582774:-1:exon
so has part: feature:582074-582193:-1:exon
so has part: feature:581946-581999:-1:exon
so has part: feature:581723-581749:-1:exon
so has part: feature:581325-581426:-1:exon
so has part: feature:581090-581134:-1:exon
so has part: feature:580851-580931:-1:exon
so has part: feature:580706-580747:-1:exon
so has part: feature:580564-580591:-1:exon
so has part: feature:580284-580333:-1:exon
so has part: feature:580064-580198:-1:exon
so has part: feature:579873-579935:-1:exon
so has part: feature:579687-579749:-1:exon
so has part: feature:579434-579502:-1:exon
so has part: feature:579079-579273:-1:exon
so has part: feature:578766-578878:-1:exon
so has part: feature:578135-578624:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:584606-586142:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:584245-584384:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:583823-583891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:583583-583645:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:583434-583499:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:582979-583194:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:582412-582774:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:582074-582193:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:581946-581999:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:581723-581749:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:581325-581426:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:581090-581134:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:580851-580931:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:580706-580747:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:580564-580591:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:580284-580333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:580064-580198:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:579873-579935:-1:exon

position:579935:-1
position: 579935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:579687-579749:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:579434-579502:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:579079-579273:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:578766-578878:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:578135-578624:-1:exon

LOC104697797
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697797
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(III) chain-like isoform X2
translation: MPPALSRPPRPLDLLPISRQLLLPSPPSHPFWHLLLALAPFPWFPLALLSLGWQDRRWPGCVGAQHPPDAVRGVRGGQGACRGPPITAGAVPGPQDQTAQASGMSQGPPSWAARPRGSRMGSSSPLHLLHTLCIVSVLAGCLHPATAQWFSLGSEDTTPDPGTSPTAPTLDGEEDADASVEHMEKVLLSKPPLATVPRRRDQASRGAAKGSGHAPPRTRGQHRPTAAPEIFEGSAVEEEFLQIQTTAKGLPRRVPSAPKRGPALQVHNISGCVCPVRPGPPGPPGPKGEKGDRGYPGERGQPGFLGERGKSGNPGQPGHQGPRGPPGPPGPPGPPGPPGTAGARSPPAPAALPERSENELEVSSPVGNPGPPGPPGLPGMPGPPGYPGHDGPPGAPGREGKPGPPGPPGAVGPPGFPGAEGLPGSPGSAGPDGPPGAPGLPGPQGPPGVPGHEGPPGPPGPASLPGKPGLRGEPGFPGPKGEKGEYGLPGMPGSPGRTGEPGSPGMPGPTGPPGPPGDYRCDSRHTGHRGSAGLPGPKGEKGDPGEPGCCYREHGCKPGHLPFPSTGSQPDPWGSISRYQTGGKEEPEIYGAIIPHGLRGPPGNPGPPGPPGPPGPPGLLYLNRVHPVHAQPPCKQPASADRSWPSDANVPQTEPLDSRADLQHQTWVFKSKELMVKASSAVPEGSLVYVREGSNAFLRTPTGWSRLLNQEAKRVQARGPNTLLQSPVDSLTQKEEEQRLTQILPTTIAPRIPSLRLAALNVPLSGDMSGIRGADLQCYRQSQEAGLYGTFRAFLSAPTQNLVSIVKRTDRTLPIINLKGQLLAKSWSSLFEGQSGAALRGPIYSFNGRSILTDPLWPHRLAWHGSTPRGGHARRWDCQGWRSSGVAEGMATTLGEGRLLAGHRHNCSTPLAVLCVEVAFPYRHMW
SIO_010081: LOC104697797
subclass of: SO_0000673
so part of: LOC104697797
location: complement(join(578414..578624,578766..578878,579079..579273,579434..579502,579687..579749,579873..579878,580064..580198,580284..580333,580564..580591,580706..580747,580851..580931,581090..581134,581325..581426,581723..581749,581946..581999,582074..582193,582412..582774,582979..583194,583434..583499,583583..583645,583823..583891,584245..584384,584606..585128))
location: region:578414-585128:-1
so has part: feature:584606-585128:-1:exon
so has part: feature:584245-584384:-1:exon
so has part: feature:583823-583891:-1:exon
so has part: feature:583583-583645:-1:exon
so has part: feature:583434-583499:-1:exon
so has part: feature:582979-583194:-1:exon
so has part: feature:582412-582774:-1:exon
so has part: feature:582074-582193:-1:exon
so has part: feature:581946-581999:-1:exon
so has part: feature:581723-581749:-1:exon
so has part: feature:581325-581426:-1:exon
so has part: feature:581090-581134:-1:exon
so has part: feature:580851-580931:-1:exon
so has part: feature:580706-580747:-1:exon
so has part: feature:580564-580591:-1:exon
so has part: feature:580284-580333:-1:exon
so has part: feature:580064-580198:-1:exon
so has part: feature:579873-579878:-1:exon
so has part: feature:579687-579749:-1:exon
so has part: feature:579434-579502:-1:exon
so has part: feature:579079-579273:-1:exon
so has part: feature:578766-578878:-1:exon
so has part: feature:578414-578624:-1:exon

XP_039421498.1
type: Protein
SIO_000068: ncbiprotein

position:578414:-1
position: 578414
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:585128:-1
position: 585128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:584606-585128:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:584245-584384:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:583823-583891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:583583-583645:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:583434-583499:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:582979-583194:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:582412-582774:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:582074-582193:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:581946-581999:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:581723-581749:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:581325-581426:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:581090-581134:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:580851-580931:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:580706-580747:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:580564-580591:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:580284-580333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:580064-580198:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:579873-579878:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:579687-579749:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:579434-579502:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:579079-579273:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:578766-578878:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:578414-578624:-1:exon

LOC104697797
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697797
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: collagen alpha-1(III) chain-like isoform X1
translation: MPPALSRPPRPLDLLPISRQLLLPSPPSHPFWHLLLALAPFPWFPLALLSLGWQDRRWPGCVGAQHPPDAVRGVRGGQGACRGPPITAGAVPGPQDQTAQASGMSQGPPSWAARPRGSRMGSSSPLHLLHTLCIVSVLAGCLHPATAQWFSLGSEDTTPDPGTSPTAPTLDGEEDADASVEHMEKVLLSKPPLATVPRRRDQASRGAAKGSGHAPPRTRGQHRPTAAPEIFEGSAVEEEFLQIQTTAKGLPRRVPSAPKRGPALQVHNISGCVCPVRPGPPGPPGPKGEKGDRGYPGERGQPGFLGERGKSGNPGQPGHQGPRGPPGPPGPPGPPGPPGTAGARSPPAPAALPERSENELEVSSPVGNPGPPGPPGLPGMPGPPGYPGHDGPPGAPGREGKPGPPGPPGAVGPPGFPGAEGLPGSPGSAGPDGPPGAPGLPGPQGPPGVPGHEGPPGPPGPASLPGKPGLRGEPGFPGPKGEKGEYGLPGMPGSPGRTGEPGSPGMPGPTGPPGPPGDYRCDSRHTGHRGSAGLPGPKGEKGDPGEPGCCYREHGCKPGHLPFPSTGSQPDPWGSISRYQTGGKEEPEIYGAIIPHGLRGPPGNPGPPGPPGPPGPPGLLYLNRVHPVHAQPPCKQPASADRSWPSDANVPQTEPLDSRADLQHQTWVFKSKELMVKASSAVPEGSLVYVREGSNAFLRTPTGWSRLLLEDPKSFLAGDDPSASTPQNQEAKRVQARGPNTLLQSPVDSLTQKEEEQRLTQILPTTIAPRIPSLRLAALNVPLSGDMSGIRGADLQCYRQSQEAGLYGTFRAFLSAPTQNLVSIVKRTDRTLPIINLKGQLLAKSWSSLFEGQSGAALRGPIYSFNGRSILTDPLWPHRLAWHGSTPRGGHARRWDCQGWRSSGVAEGMATTLGEGRLLAGHRHNCSTPLAVLCVEVAFPYRHMW
SIO_010081: LOC104697797
subclass of: SO_0000673
so part of: LOC104697797
location: complement(join(578414..578624,578766..578878,579079..579273,579434..579502,579687..579749,579873..579935,580064..580198,580284..580333,580564..580591,580706..580747,580851..580931,581090..581134,581325..581426,581723..581749,581946..581999,582074..582193,582412..582774,582979..583194,583434..583499,583583..583645,583823..583891,584245..584384,584606..585128))
location: region:578414-585128:-1
so has part: feature:584606-585128:-1:exon
so has part: feature:584245-584384:-1:exon
so has part: feature:583823-583891:-1:exon
so has part: feature:583583-583645:-1:exon
so has part: feature:583434-583499:-1:exon
so has part: feature:582979-583194:-1:exon
so has part: feature:582412-582774:-1:exon
so has part: feature:582074-582193:-1:exon
so has part: feature:581946-581999:-1:exon
so has part: feature:581723-581749:-1:exon
so has part: feature:581325-581426:-1:exon
so has part: feature:581090-581134:-1:exon
so has part: feature:580851-580931:-1:exon
so has part: feature:580706-580747:-1:exon
so has part: feature:580564-580591:-1:exon
so has part: feature:580284-580333:-1:exon
so has part: feature:580064-580198:-1:exon
so has part: feature:579873-579935:-1:exon
so has part: feature:579687-579749:-1:exon
so has part: feature:579434-579502:-1:exon
so has part: feature:579079-579273:-1:exon
so has part: feature:578766-578878:-1:exon
so has part: feature:578414-578624:-1:exon

XP_039421497.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:584606-585128:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:584245-584384:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:583823-583891:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:583583-583645:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:583434-583499:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:582979-583194:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:582412-582774:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:582074-582193:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:581946-581999:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:581723-581749:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:581325-581426:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:581090-581134:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:580851-580931:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:580706-580747:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:580564-580591:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:580284-580333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:580064-580198:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:579873-579935:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:579687-579749:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:579434-579502:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:579079-579273:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:578766-578878:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:578414-578624:-1:exon

IGFBP4
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: IGFBP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 587082..596153
location: region:587082-596153:1
so has part: feature:587082-596153:1:exon
subclass of: SO_0000010

104697798
type: Gene
SIO_000068: ncbigene

position:587082:1
position: 587082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:596153:1
position: 596153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:587082-596153:1:exon

IGFBP4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IGFBP4
product: insulin like growth factor binding protein 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 4 ESTs, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_039565761.1
SIO_010081: IGFBP4
subclass of: SO_0000673
so part of: IGFBP4
location: join(587082..587492,593402..593556,593673..593807,594098..596153)
location: region:587082-596153:1
so has part: feature:587082-587492:1:exon
so has part: feature:593402-593556:1:exon
so has part: feature:593673-593807:1:exon
so has part: feature:594098-596153:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:587082-587492:1:exon

position:587492:1
position: 587492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:593402-593556:1:exon

position:593402:1
position: 593402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:593556:1
position: 593556
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:593673-593807:1:exon

position:593673:1
position: 593673
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:593807:1
position: 593807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:594098-596153:1:exon

position:594098:1
position: 594098
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IGFBP4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IGFBP4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: insulin-like growth factor-binding protein 4
translation: MRPGPGLPGLPVLPVVLALLAAAARPGSGEEAIQCPPCSEERLARCKAPQGCAELVREPGCGCCATCALPRGTACGVYTARCGAGLRCYPPRGEPRPLRTLMHGQGICTDLADVEAIQESLQPPEKEEIDHPNNSFSPCSIHDRKCLQKQQAKRVNNGNKMRSNGSPHHREDTRVMAQGSCQSELHRALERLAASQTRTHEDLYVIPIPNCDRNGNFHPKQCHPALDGQRGKCWCVDRKTGVKLPGFLELKGDLDCHQLADSM
SIO_010081: IGFBP4
subclass of: SO_0000673
so part of: IGFBP4
location: join(587120..587492,593402..593556,593673..593807,594098..594226)
location: region:587120-594226:1
so has part: feature:587120-587492:1:exon
so has part: feature:593402-593556:1:exon
so has part: feature:593673-593807:1:exon
so has part: feature:594098-594226:1:exon

XP_039421695.1
type: Protein
SIO_000068: ncbiprotein

position:587120:1
position: 587120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:594226:1
position: 594226
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:587120-587492:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:593402-593556:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:593673-593807:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:594098-594226:1:exon

TNS4
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TNS4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(597831..614982)
location: region:597831-614982:-1
so has part: feature:597831-614982:-1:exon
subclass of: SO_0000010

104697799
type: Gene
SIO_000068: ncbigene

position:597831:-1
position: 597831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:614982:-1
position: 614982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597831-614982:-1:exon

TNS4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TNS4
product: tensin 4
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_039565760.1
SIO_010081: TNS4
subclass of: SO_0000673
so part of: TNS4
location: complement(join(597831..598692,599210..599236,599451..599519,599846..600014,600998..601069,601454..601531,601807..601899,602165..602284,602751..602837,603652..604046,604205..604631,608188..608801,614879..614982))
location: region:597831-614982:-1
so has part: feature:614879-614982:-1:exon
so has part: feature:608188-608801:-1:exon
so has part: feature:604205-604631:-1:exon
so has part: feature:603652-604046:-1:exon
so has part: feature:602751-602837:-1:exon
so has part: feature:602165-602284:-1:exon
so has part: feature:601807-601899:-1:exon
so has part: feature:601454-601531:-1:exon
so has part: feature:600998-601069:-1:exon
so has part: feature:599846-600014:-1:exon
so has part: feature:599451-599519:-1:exon
so has part: feature:599210-599236:-1:exon
so has part: feature:597831-598692:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:614879-614982:-1:exon

position:614879:-1
position: 614879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:608188-608801:-1:exon

position:608188:-1
position: 608188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608801:-1
position: 608801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:604205-604631:-1:exon

position:604205:-1
position: 604205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604631:-1
position: 604631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:603652-604046:-1:exon

position:603652:-1
position: 603652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:604046:-1
position: 604046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:602751-602837:-1:exon

position:602751:-1
position: 602751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602837:-1
position: 602837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:602165-602284:-1:exon

position:602165:-1
position: 602165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:602284:-1
position: 602284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:601807-601899:-1:exon

position:601807:-1
position: 601807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:601899:-1
position: 601899
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:601454-601531:-1:exon

position:601454:-1
position: 601454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:601531:-1
position: 601531
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:600998-601069:-1:exon

position:600998:-1
position: 600998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:601069:-1
position: 601069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:599846-600014:-1:exon

position:599846:-1
position: 599846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:600014:-1
position: 600014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:599451-599519:-1:exon

position:599451:-1
position: 599451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599519:-1
position: 599519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:599210-599236:-1:exon

position:599210:-1
position: 599210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:599236:-1
position: 599236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:597831-598692:-1:exon

position:598692:-1
position: 598692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TNS4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TNS4
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: tensin-4
translation: MSQVIESHVLRVGQTVCISSPEESKSLHPAGYPGKYVYYSTEAWTDPPSMVHPKARLLPGGRAYGTQPVSEHVAAHMQGKGQQNSSLERPPAPCQPKEEENTSMDLEAQPMSPSLDITIETLNQMILEIDPTFQPLPCRPVKDAAQPAAQGDTAATKKQDPEAIDIKYIELTPGRATGPDVPQGSPSPSGTPFSRSPQTNSFLPQKGALGGKYSTSDSVVFSSPPGPSSPQSAALSCSKAPESTSAPQQCLAGHTDTISYSLGALGTSPGADNLLKPVHVLRGRQRGSWVSQLSTSPGSDTSYILGSSTHSLHEDSDASAAACSSPGSSLGSPSSPSSGIVSHSREALGQSPSQPRAGTCLVQKGQASSCPPSILTSAADIPVLLVNGCLEQGDGPPQLAKAPPSSATQPPCXGCSPASRLGGLNNTLSAPALSCLSDSSPRAGQPTMKFVMDTSKYWFKPSISRDRAIQLLRDKEPGAFLVRDSTSYRGSFGLAMKVPGSPSGSQTGEESSDLIRHFLIESSTKGVHLKGASEELYFGSLSAFVYQHSITPLALPCKLSIPTRDLADGEDSPDYAPESALSLARKTAVCNVLYLNSVNVETLTGAPAILKGISCTLELETLPTPTLVHFRVTEQGVTLTDVQRKVFFRRHYPLAAIRFCGMDPENRKWQKYCKSSRIFGFVAKSQTDSENLCHLFAEYDTVQPVSLVIDLLRQLLPSP
SIO_010081: TNS4
subclass of: SO_0000673
so part of: TNS4
location: complement(join(598563..598692,599210..599236,599451..599519,599846..600014,600998..601069,601454..601531,601807..601899,602165..602284,602751..602837,603652..604046,604205..604631,608188..608680))
location: region:598563-608680:-1
so has part: feature:608188-608680:-1:exon
so has part: feature:604205-604631:-1:exon
so has part: feature:603652-604046:-1:exon
so has part: feature:602751-602837:-1:exon
so has part: feature:602165-602284:-1:exon
so has part: feature:601807-601899:-1:exon
so has part: feature:601454-601531:-1:exon
so has part: feature:600998-601069:-1:exon
so has part: feature:599846-600014:-1:exon
so has part: feature:599451-599519:-1:exon
so has part: feature:599210-599236:-1:exon
so has part: feature:598563-598692:-1:exon

XP_039421694.1
type: Protein
SIO_000068: ncbiprotein

position:598563:-1
position: 598563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:608680:-1
position: 608680
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:608188-608680:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:604205-604631:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:603652-604046:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:602751-602837:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:602165-602284:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:601807-601899:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:601454-601531:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:600998-601069:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:599846-600014:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:599451-599519:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:599210-599236:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:598563-598692:-1:exon

CCR7
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CCR7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(632543..642394)
location: region:632543-642394:-1
so has part: feature:632543-642394:-1:exon
subclass of: SO_0000010

104697738
type: Gene
SIO_000068: ncbigene

position:632543:-1
position: 632543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:642394:-1
position: 642394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:632543-642394:-1:exon

CCR7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CCR7
product: C-C motif chemokine receptor 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_010412750.3
SIO_010081: CCR7
subclass of: SO_0000673
so part of: CCR7
location: complement(join(632543..635865,637168..637217,642119..642394))
location: region:632543-642394:-1
so has part: feature:642119-642394:-1:exon
so has part: feature:637168-637217:-1:exon
so has part: feature:632543-635865:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:642119-642394:-1:exon

position:642119:-1
position: 642119
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:637168-637217:-1:exon

position:637168:-1
position: 637168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:637217:-1
position: 637217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:632543-635865:-1:exon

position:635865:-1
position: 635865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CCR7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CCR7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: C-C chemokine receptor type 7
translation: MDGGKQLKVTLVFSLPLVFQICAGDNVTDDYDSNTTIDYSMFESLCEKKEVRNFRAAFLPAMYGLICIMGLLGNGLVMLTYIYFKRLKTMTDIYLLNLALADILFLLTLPFWATSAATHWLFGSFACKAVYCICKMSFFSGMLLLLSISIDRYFAIVQAASAHRLRPRMIFISKVTCVFIWLLAFILSIPELVHSGVNNSESNPRCSIIAHDLQTFNTGIKVSQMVFGFLIPLLVMSFCYLIIIKTLLQARNFEKNKAIKVIIAVVIVFVVFQLPYNGVMLAKTISAFNQTSSCEESKTLDVADDVTYTLACFRCCLNPFLYAFIGVKFRTDLFKLLKELGCLSQERLWQLTTCRDNKRSSFAMETETTTTFSP
SIO_010081: CCR7
subclass of: SO_0000673
so part of: CCR7
location: complement(join(634801..635865,637168..637217,642119..642128))
location: region:634801-642128:-1
so has part: feature:642119-642128:-1:exon
so has part: feature:637168-637217:-1:exon
so has part: feature:634801-635865:-1:exon

XP_010411052.2
type: Protein
SIO_000068: ncbiprotein

position:634801:-1
position: 634801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:642128:-1
position: 642128
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:642119-642128:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:637168-637217:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:634801-635865:-1:exon

SMARCE1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: SMARCE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(649917..665394)
location: region:649917-665394:-1
so has part: feature:649917-665394:-1:exon
subclass of: SO_0000010

104697739
type: Gene
SIO_000068: ncbigene

position:649917:-1
position: 649917
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:665394:-1
position: 665394
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:649917-665394:-1:exon

SMARCE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SMARCE1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
transcript id: XM_039565631.1
SIO_010081: SMARCE1
subclass of: SO_0000673
so part of: SMARCE1
location: complement(join(649917..651468,652174..652384,652887..652988,653989..654161,655792..655963,658640..658720,660967..661071,663973..664016,664523..664573,665332..665394))
location: region:649917-665394:-1
so has part: feature:665332-665394:-1:exon
so has part: feature:664523-664573:-1:exon
so has part: feature:663973-664016:-1:exon
so has part: feature:660967-661071:-1:exon
so has part: feature:658640-658720:-1:exon
so has part: feature:655792-655963:-1:exon
so has part: feature:653989-654161:-1:exon
so has part: feature:652887-652988:-1:exon
so has part: feature:652174-652384:-1:exon
so has part: feature:649917-651468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:665332-665394:-1:exon

position:665332:-1
position: 665332
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:664523-664573:-1:exon

position:664523:-1
position: 664523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664573:-1
position: 664573
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:663973-664016:-1:exon

position:663973:-1
position: 663973
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664016:-1
position: 664016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:660967-661071:-1:exon

position:660967:-1
position: 660967
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:661071:-1
position: 661071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:658640-658720:-1:exon

position:658640:-1
position: 658640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:658720:-1
position: 658720
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:655792-655963:-1:exon

position:655792:-1
position: 655792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:655963:-1
position: 655963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:653989-654161:-1:exon

position:653989:-1
position: 653989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:654161:-1
position: 654161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:652887-652988:-1:exon

position:652887:-1
position: 652887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:652988:-1
position: 652988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:652174-652384:-1:exon

position:652174:-1
position: 652174
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:652384:-1
position: 652384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:649917-651468:-1:exon

position:651468:-1
position: 651468
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SMARCE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SMARCE1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_039565630.1
SIO_010081: SMARCE1
subclass of: SO_0000673
so part of: SMARCE1
location: complement(join(649917..651468,652174..652384,652887..652988,653989..654161,655792..655963,657408..657539,658640..658720,663973..664016,664523..664573,665332..665391))
location: region:649917-665391:-1
so has part: feature:665332-665391:-1:exon
so has part: feature:664523-664573:-1:exon
so has part: feature:663973-664016:-1:exon
so has part: feature:658640-658720:-1:exon
so has part: feature:657408-657539:-1:exon
so has part: feature:655792-655963:-1:exon
so has part: feature:653989-654161:-1:exon
so has part: feature:652887-652988:-1:exon
so has part: feature:652174-652384:-1:exon
so has part: feature:649917-651468:-1:exon

position:665391:-1
position: 665391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665332-665391:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:664523-664573:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:663973-664016:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:658640-658720:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:657408-657539:-1:exon

position:657408:-1
position: 657408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:657539:-1
position: 657539
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:655792-655963:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:653989-654161:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652887-652988:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:652174-652384:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:649917-651468:-1:exon

SMARCE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SMARCE1
product: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565629.1
SIO_010081: SMARCE1
subclass of: SO_0000673
so part of: SMARCE1
location: complement(join(649917..651468,652174..652384,652887..652988,653989..654161,655792..655963,657408..657539,658640..658720,660967..661071,663973..664016,664523..664573,665332..665391))
location: region:649917-665391:-1
so has part: feature:665332-665391:-1:exon
so has part: feature:664523-664573:-1:exon
so has part: feature:663973-664016:-1:exon
so has part: feature:660967-661071:-1:exon
so has part: feature:658640-658720:-1:exon
so has part: feature:657408-657539:-1:exon
so has part: feature:655792-655963:-1:exon
so has part: feature:653989-654161:-1:exon
so has part: feature:652887-652988:-1:exon
so has part: feature:652174-652384:-1:exon
so has part: feature:649917-651468:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:665332-665391:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:664523-664573:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:663973-664016:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:660967-661071:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:658640-658720:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:657408-657539:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:655792-655963:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:653989-654161:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:652887-652988:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:652174-652384:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:649917-651468:-1:exon

SMARCE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SMARCE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2
translation: MSKRPSYAPPPTPAPATASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTESFNNELKRLCSLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQNSLAAEEEQAASKGEEKKEEESTPMETEEPHPEESTENQQNGEEGTSTPEDKESGQEGVDSTAEEGTSDSNTGSESNSATVEEPPADPIAEEGDKKE
SIO_010081: SMARCE1
subclass of: SO_0000673
so part of: SMARCE1
location: complement(join(651257..651468,652174..652384,652887..652988,653989..654161,655792..655963,657408..657539,658640..658720,663973..664016,664523..664529))
location: region:651257-664529:-1
so has part: feature:664523-664529:-1:exon
so has part: feature:663973-664016:-1:exon
so has part: feature:658640-658720:-1:exon
so has part: feature:657408-657539:-1:exon
so has part: feature:655792-655963:-1:exon
so has part: feature:653989-654161:-1:exon
so has part: feature:652887-652988:-1:exon
so has part: feature:652174-652384:-1:exon
so has part: feature:651257-651468:-1:exon

XP_039421564.1
type: Protein
SIO_000068: ncbiprotein

position:651257:-1
position: 651257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:664529:-1
position: 664529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:664523-664529:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:663973-664016:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:658640-658720:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:657408-657539:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:655792-655963:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:653989-654161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652887-652988:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652174-652384:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:651257-651468:-1:exon

SMARCE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SMARCE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3
translation: MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTESFNNELKRLCSLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQNSLAAEEEQAASKGEEKKEEESTPMETEEPHPEESTENQQNGEEGTSTPEDKESGQEGVDSTAEEGTSDSNTGSESNSATVEEPPADPIAEEGDKKE
SIO_010081: SMARCE1
subclass of: SO_0000673
so part of: SMARCE1
location: complement(join(651257..651468,652174..652384,652887..652988,653989..654161,655792..655963,658640..658720,660967..661071,663973..664016,664523..664529))
location: region:651257-664529:-1
so has part: feature:664523-664529:-1:exon
so has part: feature:663973-664016:-1:exon
so has part: feature:660967-661071:-1:exon
so has part: feature:658640-658720:-1:exon
so has part: feature:655792-655963:-1:exon
so has part: feature:653989-654161:-1:exon
so has part: feature:652887-652988:-1:exon
so has part: feature:652174-652384:-1:exon
so has part: feature:651257-651468:-1:exon

XP_039421565.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:664523-664529:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:663973-664016:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:660967-661071:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:658640-658720:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:655792-655963:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:653989-654161:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:652887-652988:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652174-652384:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:651257-651468:-1:exon

SMARCE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SMARCE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1
translation: MSKRPSYAPPPTPAPATQMPSTPGFVGYNPYSHLAYNNYRLGGNPGTNSRVTASSGITIPKPPKPPDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDGFSMKHTATARFQRNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTESFNNELKRLCSLKVEVDMEKIAAEIAQAEEQARKRQEEREKEAAEQAERSQNSLAAEEEQAASKGEEKKEEESTPMETEEPHPEESTENQQNGEEGTSTPEDKESGQEGVDSTAEEGTSDSNTGSESNSATVEEPPADPIAEEGDKKE
SIO_010081: SMARCE1
subclass of: SO_0000673
so part of: SMARCE1
location: complement(join(651257..651468,652174..652384,652887..652988,653989..654161,655792..655963,657408..657539,658640..658720,660967..661071,663973..664016,664523..664529))
location: region:651257-664529:-1
so has part: feature:664523-664529:-1:exon
so has part: feature:663973-664016:-1:exon
so has part: feature:660967-661071:-1:exon
so has part: feature:658640-658720:-1:exon
so has part: feature:657408-657539:-1:exon
so has part: feature:655792-655963:-1:exon
so has part: feature:653989-654161:-1:exon
so has part: feature:652887-652988:-1:exon
so has part: feature:652174-652384:-1:exon
so has part: feature:651257-651468:-1:exon

XP_039421563.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:664523-664529:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:663973-664016:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:660967-661071:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:658640-658720:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:657408-657539:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:655792-655963:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:653989-654161:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:652887-652988:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:652174-652384:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:651257-651468:-1:exon

LOC109146394
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC109146394
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 665836..679283
location: region:665836-679283:1
so has part: feature:665836-679283:1:exon
subclass of: SO_0000011

109146394
type: Gene
SIO_000068: ncbigene

position:665836:1
position: 665836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:679283:1
position: 679283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:665836-679283:1:exon

LOC109146394
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC109146394
product: uncharacterized LOC109146394
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XR_002048383.2
SIO_010081: LOC109146394
subclass of: SO_0000673
so part of: LOC109146394
location: join(665836..667090,676662..676704,679207..679283)
location: region:665836-679283:1
so has part: feature:665836-667090:1:exon
so has part: feature:676662-676704:1:exon
so has part: feature:679207-679283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:665836-667090:1:exon

position:667090:1
position: 667090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:676662-676704:1:exon

position:676662:1
position: 676662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:676704:1
position: 676704
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:679207-679283:1:exon

position:679207:1
position: 679207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

KRT222
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: KRT222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(668293..675249)
location: region:668293-675249:-1
so has part: feature:668293-675249:-1:exon
subclass of: SO_0000010

104697742
type: Gene
SIO_000068: ncbigene

position:668293:-1
position: 668293
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675249:-1
position: 675249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:668293-675249:-1:exon

KRT222
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: KRT222
product: keratin 222, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_010412758.3
SIO_010081: KRT222
subclass of: SO_0000673
so part of: KRT222
location: complement(join(668293..670200,671534..671639,671806..671882,672409..672629,673349..673477,675105..675249))
location: region:668293-675249:-1
so has part: feature:675105-675249:-1:exon
so has part: feature:673349-673477:-1:exon
so has part: feature:672409-672629:-1:exon
so has part: feature:671806-671882:-1:exon
so has part: feature:671534-671639:-1:exon
so has part: feature:668293-670200:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:675105-675249:-1:exon

position:675105:-1
position: 675105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:673349-673477:-1:exon

position:673349:-1
position: 673349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:673477:-1
position: 673477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:672409-672629:-1:exon

position:672409:-1
position: 672409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:672629:-1
position: 672629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:671806-671882:-1:exon

position:671806:-1
position: 671806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:671882:-1
position: 671882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:671534-671639:-1:exon

position:671534:-1
position: 671534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:671639:-1
position: 671639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:668293-670200:-1:exon

position:670200:-1
position: 670200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KRT222
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: KRT222
product: keratin 222, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XM_010412759.2
SIO_010081: KRT222
subclass of: SO_0000673
so part of: KRT222
location: complement(join(668293..670200,671534..671639,671806..671882,672409..672629,673349..673477,675023..675195))
location: region:668293-675195:-1
so has part: feature:675023-675195:-1:exon
so has part: feature:673349-673477:-1:exon
so has part: feature:672409-672629:-1:exon
so has part: feature:671806-671882:-1:exon
so has part: feature:671534-671639:-1:exon
so has part: feature:668293-670200:-1:exon

position:675195:-1
position: 675195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675023-675195:-1:exon

position:675023:-1
position: 675023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:673349-673477:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:672409-672629:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:671806-671882:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:671534-671639:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:668293-670200:-1:exon

KRT222
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: KRT222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-like protein KRT222 isoform X1
translation: MEPARLRREIRAKYESLITRNQIKTVSSARTQLEEGTSKRMDKDAEALKAARAELCEARRQWHHMQIEIESLHAVEKGLERSLRATEQQYHMQLQNLEGEIECLEKELSEVRRGIEKQLREHEILLNTRMKLEEEIATYRSLLEQEESRFRCSIPAQKDDKKPSTSKITFMLPSENVKKHEPKKVELMTKQAILDGNIMKKSAEAHGTVQTEKVDEVIKEWEGSFFKDNPRLRKKSVSLRFDLHLAATEEGCLHTKKKTLPDIEVRLVMRRSCSIPSIKP
SIO_010081: KRT222
subclass of: SO_0000673
so part of: KRT222
location: complement(join(669987..670200,671534..671639,671806..671882,672409..672629,673349..673477,675105..675200))
location: region:669987-675200:-1
so has part: feature:675105-675200:-1:exon
so has part: feature:673349-673477:-1:exon
so has part: feature:672409-672629:-1:exon
so has part: feature:671806-671882:-1:exon
so has part: feature:671534-671639:-1:exon
so has part: feature:669987-670200:-1:exon

XP_010411060.1
type: Protein
SIO_000068: ncbiprotein

position:669987:-1
position: 669987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:675200:-1
position: 675200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:675105-675200:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:673349-673477:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:672409-672629:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:671806-671882:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:671534-671639:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:669987-670200:-1:exon

KRT222
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: KRT222
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin-like protein KRT222 isoform X2
translation: MDKDAEALKAARAELCEARRQWHHMQIEIESLHAVEKGLERSLRATEQQYHMQLQNLEGEIECLEKELSEVRRGIEKQLREHEILLNTRMKLEEEIATYRSLLEQEESRFRCSIPAQKDDKKPSTSKITFMLPSENVKKHEPKKVELMTKQAILDGNIMKKSAEAHGTVQTEKVDEVIKEWEGSFFKDNPRLRKKSVSLRFDLHLAATEEGCLHTKKKTLPDIEVRLVMRRSCSIPSIKP
SIO_010081: KRT222
subclass of: SO_0000673
so part of: KRT222
location: complement(join(669987..670200,671534..671639,671806..671882,672409..672629,673349..673453))
location: region:669987-673453:-1
so has part: feature:673349-673453:-1:exon
so has part: feature:672409-672629:-1:exon
so has part: feature:671806-671882:-1:exon
so has part: feature:671534-671639:-1:exon
so has part: feature:669987-670200:-1:exon

XP_010411061.1
type: Protein
SIO_000068: ncbiprotein

position:673453:-1
position: 673453
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:673349-673453:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:672409-672629:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:671806-671882:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:671534-671639:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:669987-670200:-1:exon

LOC104697741
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697741
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(676887..680714)
location: region:676887-680714:-1
so has part: feature:676887-680714:-1:exon
subclass of: SO_0000010

104697741
type: Gene
SIO_000068: ncbigene

position:676887:-1
position: 676887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:680714:-1
position: 680714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:676887-680714:-1:exon

LOC104697741
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697741
product: keratin, type I cytoskeletal 12-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 161 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_010412756.4
SIO_010081: LOC104697741
subclass of: SO_0000673
so part of: LOC104697741
location: complement(join(676887..677312,677553..677635,677898..678115,678485..678610,678709..678870,679144..679300,679529..679611,679954..680714))
location: region:676887-680714:-1
so has part: feature:679954-680714:-1:exon
so has part: feature:679529-679611:-1:exon
so has part: feature:679144-679300:-1:exon
so has part: feature:678709-678870:-1:exon
so has part: feature:678485-678610:-1:exon
so has part: feature:677898-678115:-1:exon
so has part: feature:677553-677635:-1:exon
so has part: feature:676887-677312:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:679954-680714:-1:exon

position:679954:-1
position: 679954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:679529-679611:-1:exon

position:679529:-1
position: 679529
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:679611:-1
position: 679611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:679144-679300:-1:exon

position:679144:-1
position: 679144
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:679300:-1
position: 679300
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:678709-678870:-1:exon

position:678709:-1
position: 678709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678870:-1
position: 678870
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:678485-678610:-1:exon

position:678485:-1
position: 678485
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678610:-1
position: 678610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:677898-678115:-1:exon

position:677898:-1
position: 677898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:678115:-1
position: 678115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:677553-677635:-1:exon

position:677553:-1
position: 677553
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:677635:-1
position: 677635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:676887-677312:-1:exon

position:677312:-1
position: 677312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104697741
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697741
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 12-like
translation: MAFSMRTSGGSRQFSSRSGFGGGSLRMSSSGGGGGFGGSGLGLGGGSSGGFGAVSLLGSGSGFGGGFGGSSGPGFGSSLSSGFGGSFGGGLGGSYGSGLGSGFGGGLGSGFGSSSGAAFGSGFGGGSGTGFGGGLGAAGAGDGGILSGSKKETMQNLNDRLAAYLDKVRSLEDANTELERKIREWYEKSGPGTGTPGSGNDYSKFYPLIEDLRNKIINATIDNARIILQVDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTITRADLEMQIESLNEELAYLKKNHEEELQGIQSSEFGQVSVEMDAAPGTDLTKLLNDMRGQYEVIAEQNRKEAEAWFNEKSGELKREISTHTEQLQSGKSEITDLKRTLQSLEIELQSQLAMKKSLEDTLAETEGGYCAQLSQIQMQIGNLESQLFQVRADMERQNAEYQQLLDIKTRLEMEIETYRRLLDGEFVSAGQAVTFESSPLTGSKSQTQSLDSSQDPTKTRKIKTIVEEVVDGKVVASHVKEVEEKI
SIO_010081: LOC104697741
subclass of: SO_0000673
so part of: LOC104697741
location: complement(join(677215..677312,677553..677635,677898..678115,678485..678610,678709..678870,679144..679300,679529..679611,679954..680598))
location: region:677215-680598:-1
so has part: feature:679954-680598:-1:exon
so has part: feature:679529-679611:-1:exon
so has part: feature:679144-679300:-1:exon
so has part: feature:678709-678870:-1:exon
so has part: feature:678485-678610:-1:exon
so has part: feature:677898-678115:-1:exon
so has part: feature:677553-677635:-1:exon
so has part: feature:677215-677312:-1:exon

XP_010411058.1
type: Protein
SIO_000068: ncbiprotein

position:677215:-1
position: 677215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:680598:-1
position: 680598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:679954-680598:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:679529-679611:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:679144-679300:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:678709-678870:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:678485-678610:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:677898-678115:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:677553-677635:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:677215-677312:-1:exon

KRT20
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: KRT20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(682089..687203)
location: region:682089-687203:-1
so has part: feature:682089-687203:-1:exon
subclass of: SO_0000010

104697740
type: Gene
SIO_000068: ncbigene

position:682089:-1
position: 682089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:687203:-1
position: 687203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:682089-687203:-1:exon

KRT20
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: KRT20
product: keratin 20
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 112 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_019293814.3
SIO_010081: KRT20
subclass of: SO_0000673
so part of: KRT20
location: complement(join(682089..682583,683258..683298,683887..684107,684257..684382,684464..684625,685135..685291,685496..685578,686370..687203))
location: region:682089-687203:-1
so has part: feature:686370-687203:-1:exon
so has part: feature:685496-685578:-1:exon
so has part: feature:685135-685291:-1:exon
so has part: feature:684464-684625:-1:exon
so has part: feature:684257-684382:-1:exon
so has part: feature:683887-684107:-1:exon
so has part: feature:683258-683298:-1:exon
so has part: feature:682089-682583:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:686370-687203:-1:exon

position:686370:-1
position: 686370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:685496-685578:-1:exon

position:685496:-1
position: 685496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:685578:-1
position: 685578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:685135-685291:-1:exon

position:685135:-1
position: 685135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:685291:-1
position: 685291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:684464-684625:-1:exon

position:684464:-1
position: 684464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:684625:-1
position: 684625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:684257-684382:-1:exon

position:684257:-1
position: 684257
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:684382:-1
position: 684382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:683887-684107:-1:exon

position:683887:-1
position: 683887
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:684107:-1
position: 684107
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:683258-683298:-1:exon

position:683258:-1
position: 683258
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:683298:-1
position: 683298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:682089-682583:-1:exon

position:682583:-1
position: 682583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KRT20
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: KRT20
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 20
translation: MIQQIIFCLSVIQNNKASKLSRECSSNTDEQMKTPLNYGEGGAISCVLFVLIPVKFCVNRGGVSSHCASSWTWYKGAQCTLSSSLPSLSVLLYLLQSRRQRAQMAFSTRSIQWGMSSHLQSSAPSVSSLTSRKMSIQKIQAPSVYGGAGGYGTRISTSISSGQGLGGSSQLSITGSDVLLAGNEKSTMQNLNDRLAAYLERVRSLEKSNSLIEMQIKQWYEKNTKSAGQDYSSYFKTIEELRNKISAAQMENAGLVLQIDNAKLAADDFRLKFENEHLLKQSVESDITGLLRVRDDLTLTKSDLESQIENITEELIFLRKNHEEDRDRLRKEASGSVNVAVDAAPGIDLAAIMENMRKQYEEMAEKNRQEAKERFEQQTVELNQEVALNVERLGVQRKEIMERRQVFQSLELELQSLLTMKETLEGSVAETEARYSYQLAQIQGAISSLEAQLRQLRADMEAQNNEYSTLLDIKTRLEMEIATYRRLLEGEESRNLEPIASIEELEKESSKLKKIKTIVEEVVDGKVVSSEVTEFEEKM
SIO_010081: KRT20
subclass of: SO_0000673
so part of: KRT20
location: complement(join(682486..682583,683258..683298,683887..684107,684257..684382,684464..684625,685135..685291,685496..685578,686370..687101))
location: region:682486-687101:-1
so has part: feature:686370-687101:-1:exon
so has part: feature:685496-685578:-1:exon
so has part: feature:685135-685291:-1:exon
so has part: feature:684464-684625:-1:exon
so has part: feature:684257-684382:-1:exon
so has part: feature:683887-684107:-1:exon
so has part: feature:683258-683298:-1:exon
so has part: feature:682486-682583:-1:exon

XP_019149359.3
type: Protein
SIO_000068: ncbiprotein

position:682486:-1
position: 682486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:687101:-1
position: 687101
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:686370-687101:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:685496-685578:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:685135-685291:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:684464-684625:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:684257-684382:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:683887-684107:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:683258-683298:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:682486-682583:-1:exon

KRT23
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: KRT23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(696516..706749)
location: region:696516-706749:-1
so has part: feature:696516-706749:-1:exon
subclass of: SO_0000010

104697743
type: Gene
SIO_000068: ncbigene

position:696516:-1
position: 696516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:706749:-1
position: 706749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:696516-706749:-1:exon

KRT23
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: KRT23
product: keratin 23
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 82 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_010412760.4
SIO_010081: KRT23
subclass of: SO_0000673
so part of: KRT23
location: complement(join(696516..697038,697690..697715,698391..698611,699354..699479,699572..699733,701196..701352,702686..702768,706261..706749))
location: region:696516-706749:-1
so has part: feature:706261-706749:-1:exon
so has part: feature:702686-702768:-1:exon
so has part: feature:701196-701352:-1:exon
so has part: feature:699572-699733:-1:exon
so has part: feature:699354-699479:-1:exon
so has part: feature:698391-698611:-1:exon
so has part: feature:697690-697715:-1:exon
so has part: feature:696516-697038:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:706261-706749:-1:exon

position:706261:-1
position: 706261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:702686-702768:-1:exon

position:702686:-1
position: 702686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:702768:-1
position: 702768
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:701196-701352:-1:exon

position:701196:-1
position: 701196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:701352:-1
position: 701352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:699572-699733:-1:exon

position:699572:-1
position: 699572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:699733:-1
position: 699733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:699354-699479:-1:exon

position:699354:-1
position: 699354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:699479:-1
position: 699479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:698391-698611:-1:exon

position:698391:-1
position: 698391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:698611:-1
position: 698611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:697690-697715:-1:exon

position:697690:-1
position: 697690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:697715:-1
position: 697715
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:696516-697038:-1:exon

position:697038:-1
position: 697038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KRT23
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: KRT23
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 23
translation: MSTSQGPFQFFSVSLRGSSGCGLAQQGTSYRASSADGGASSTHPSFSSTRPFWLAAGGAPWGGFGEHYGESIFLGGNEKQTMQNLNERLAAYLDKVRALEAANAQLESCILEWHRTKSHGKRHDFNQYEQNVTDMQRQIEDSKITNASILLQIDNANMATEDFRLKYEAEKCRRQGVQLDVENLRKELDGMTIITTDLEMEIEGLREEHILRRKDHEEDMEANRSSQDFKVNVKVNAAPPQDLGKILAEIREDYEAIIEKNRLSLDNWYKEQSAAMSLAATPNPEQIQHNENEIKELRRTLQSLDIELQAQISKKHMLEDTLADTRNYYAAVLQNMQQIISRCEEELSQVRHDMKQQNNQYKVLLGIKTRLEKEISTYRLLLEGNADGTARKSETKEHSGLSNRKLKAIVHDSVNGEVVSSTINEIPPQA
SIO_010081: KRT23
subclass of: SO_0000673
so part of: KRT23
location: complement(join(696935..697038,697690..697715,698391..698611,699354..699479,699572..699733,701196..701352,702686..702768,706261..706674))
location: region:696935-706674:-1
so has part: feature:706261-706674:-1:exon
so has part: feature:702686-702768:-1:exon
so has part: feature:701196-701352:-1:exon
so has part: feature:699572-699733:-1:exon
so has part: feature:699354-699479:-1:exon
so has part: feature:698391-698611:-1:exon
so has part: feature:697690-697715:-1:exon
so has part: feature:696935-697038:-1:exon

XP_010411062.2
type: Protein
SIO_000068: ncbiprotein

position:696935:-1
position: 696935
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:706674:-1
position: 706674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:706261-706674:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:702686-702768:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:701196-701352:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:699572-699733:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:699354-699479:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:698391-698611:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:697690-697715:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:696935-697038:-1:exon

LOC104697745
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697745
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(710197..724281)
location: region:710197-724281:-1
so has part: feature:710197-724281:-1:exon
subclass of: SO_0000010

104697745
type: Gene
SIO_000068: ncbigene

position:710197:-1
position: 710197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:724281:-1
position: 724281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:710197-724281:-1:exon

LOC104697745
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697745
product: keratin, type I cytoskeletal 10-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 422 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_010412762.3
SIO_010081: LOC104697745
subclass of: SO_0000673
so part of: LOC104697745
location: complement(join(710197..710514,711014..711039,711871..712091,712229..712354,712491..712652,712943..713099,713902..713984,714478..715067,718989..719089,719486..719516,720023..720051,720786..721006,721123..721248,721381..721542,721785..721941,722271..722353,723725..724281))
location: region:710197-724281:-1
so has part: feature:723725-724281:-1:exon
so has part: feature:722271-722353:-1:exon
so has part: feature:721785-721941:-1:exon
so has part: feature:721381-721542:-1:exon
so has part: feature:721123-721248:-1:exon
so has part: feature:720786-721006:-1:exon
so has part: feature:720023-720051:-1:exon
so has part: feature:719486-719516:-1:exon
so has part: feature:718989-719089:-1:exon
so has part: feature:714478-715067:-1:exon
so has part: feature:713902-713984:-1:exon
so has part: feature:712943-713099:-1:exon
so has part: feature:712491-712652:-1:exon
so has part: feature:712229-712354:-1:exon
so has part: feature:711871-712091:-1:exon
so has part: feature:711014-711039:-1:exon
so has part: feature:710197-710514:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:723725-724281:-1:exon

position:723725:-1
position: 723725
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:722271-722353:-1:exon

position:722271:-1
position: 722271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:722353:-1
position: 722353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:721785-721941:-1:exon

position:721785:-1
position: 721785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:721941:-1
position: 721941
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:721381-721542:-1:exon

position:721381:-1
position: 721381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:721542:-1
position: 721542
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:721123-721248:-1:exon

position:721123:-1
position: 721123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:721248:-1
position: 721248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:720786-721006:-1:exon

position:720786:-1
position: 720786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:721006:-1
position: 721006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:720023-720051:-1:exon

position:720023:-1
position: 720023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:720051:-1
position: 720051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:719486-719516:-1:exon

position:719486:-1
position: 719486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:719516:-1
position: 719516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:718989-719089:-1:exon

position:718989:-1
position: 718989
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:719089:-1
position: 719089
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:714478-715067:-1:exon

position:714478:-1
position: 714478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:715067:-1
position: 715067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:713902-713984:-1:exon

position:713902:-1
position: 713902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:713984:-1
position: 713984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:712943-713099:-1:exon

position:712943:-1
position: 712943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:713099:-1
position: 713099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:712491-712652:-1:exon

position:712491:-1
position: 712491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:712652:-1
position: 712652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:712229-712354:-1:exon

position:712229:-1
position: 712229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:712354:-1
position: 712354
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:711871-712091:-1:exon

position:711871:-1
position: 711871
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:712091:-1
position: 712091
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:711014-711039:-1:exon

position:711014:-1
position: 711014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:711039:-1
position: 711039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:710197-710514:-1:exon

position:710514:-1
position: 710514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104697745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697745
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 10-like
translation: MASYSFRQTSSSVAGGPGASSLRFGGSFRAPSIHGGSGGRGVSVSSARFVSSGLGSGLGGGYGGGSFSSSFSYGGGLGGDGLLSGNEKATMQSLNDRLASYLEKVRALEEANSDLETKIRDWYQKQGPSPTRDYSPYFKTIEDLRDKILDATIDNARIVLQIDNARLAADDFKTKFETEQGLRMSVEADINGLRRVLDELTLSRADLELQIEGLKEELAYLKKNHEEELSALRGQVAGQISVELDSAPGIDLSKILADMRDQYEHMAEKNRKDAEAWFHSKTEELNREVAVNTEQLQSSKSEVTDLRRTLQGLEIELQSQLSMKAALEGTLADTEARYGAQLAQIQGLVGSIEAQLAELRADMERQNTEYKILMDIKTRLEQEIATYRQLLEGQESQMFGSLSGTADKRDKLGDGKQSLEYRGSSIPSPSVGDTRVAWVSHYGGVLSAEQAFAPSCATAMATSFMSSSSTCGGGFGGAGGSCSRLSSVRTGGSYRAPSIHGGSGGRGVSISSARYVSSAGGGYGFGGGYGGGFGGGAACGFGGGSGFGGGSGFGGGAGFGGGAGFGGGFDLGGGFGGGDGLLSGNEKITMQNLNDRLASYLDKVRALEEANSDLEVKIRDWYQKQAPTSPARDYSNYYKIIEDLRDKILAATIDNSRVILEIDNARLAADDFRLKYENELFLRQSVESDINGLRRVLDELTLSRADLEMQIETLKEELAYMKKNHEEEMKEYSNQLSGTVNVEMDAVPGIDLTRVLAEMREQYEALAEKNRKDAEAWFFTQTDELNREVATHTQQIQTSKSEITELRRTMQGLEIELQSQLSMKAGLEANLRDTEGRYCAQLAQIQALITSVEEQLSELRCDMERQNQEYKMLMDIKSRLEQEIATYRQLLEGQDSQLSGLNPKDAFGSGGRVRSGMEEDGKSGSTRDRRF
SIO_010081: LOC104697745
subclass of: SO_0000673
so part of: LOC104697745
location: complement(join(710435..710514,711014..711039,711871..712091,712229..712354,712491..712652,712943..713099,713902..713984,714478..715067,718989..719089,719486..719516,720023..720051,720786..721006,721123..721248,721381..721542,721785..721941,722271..722353,723725..724165))
location: region:710435-724165:-1
so has part: feature:723725-724165:-1:exon
so has part: feature:722271-722353:-1:exon
so has part: feature:721785-721941:-1:exon
so has part: feature:721381-721542:-1:exon
so has part: feature:721123-721248:-1:exon
so has part: feature:720786-721006:-1:exon
so has part: feature:720023-720051:-1:exon
so has part: feature:719486-719516:-1:exon
so has part: feature:718989-719089:-1:exon
so has part: feature:714478-715067:-1:exon
so has part: feature:713902-713984:-1:exon
so has part: feature:712943-713099:-1:exon
so has part: feature:712491-712652:-1:exon
so has part: feature:712229-712354:-1:exon
so has part: feature:711871-712091:-1:exon
so has part: feature:711014-711039:-1:exon
so has part: feature:710435-710514:-1:exon

XP_010411064.2
type: Protein
SIO_000068: ncbiprotein

position:710435:-1
position: 710435
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:724165:-1
position: 724165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:723725-724165:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:722271-722353:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:721785-721941:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:721381-721542:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:721123-721248:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:720786-721006:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:720023-720051:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:719486-719516:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:718989-719089:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:714478-715067:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:713902-713984:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:712943-713099:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:712491-712652:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:712229-712354:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:711871-712091:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:711014-711039:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:710435-710514:-1:exon

LOC104697800
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697800
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(732338..736451)
location: region:732338-736451:-1
so has part: feature:732338-736451:-1:exon
subclass of: SO_0000010

104697800
type: Gene
SIO_000068: ncbigene

position:732338:-1
position: 732338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736451:-1
position: 736451
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:732338-736451:-1:exon

LOC104697800
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697800
product: keratin, type I cytoskeletal 15-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 217 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
transcript id: XM_019293803.2
SIO_010081: LOC104697800
subclass of: SO_0000673
so part of: LOC104697800
location: complement(join(732338..732631,732942..733033,733584..733810,733903..734028,734192..734353,734713..734869,735022..735104,735929..736451))
location: region:732338-736451:-1
so has part: feature:735929-736451:-1:exon
so has part: feature:735022-735104:-1:exon
so has part: feature:734713-734869:-1:exon
so has part: feature:734192-734353:-1:exon
so has part: feature:733903-734028:-1:exon
so has part: feature:733584-733810:-1:exon
so has part: feature:732942-733033:-1:exon
so has part: feature:732338-732631:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:735929-736451:-1:exon

position:735929:-1
position: 735929
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:735022-735104:-1:exon

position:735022:-1
position: 735022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:735104:-1
position: 735104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:734713-734869:-1:exon

position:734713:-1
position: 734713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:734869:-1
position: 734869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:734192-734353:-1:exon

position:734192:-1
position: 734192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:734353:-1
position: 734353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:733903-734028:-1:exon

position:733903:-1
position: 733903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:734028:-1
position: 734028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:733584-733810:-1:exon

position:733584:-1
position: 733584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:733810:-1
position: 733810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:732942-733033:-1:exon

position:732942:-1
position: 732942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:733033:-1
position: 733033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:732338-732631:-1:exon

position:732631:-1
position: 732631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104697800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697800
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 15-like
translation: MSCSIKRTSSTSYRSGGGGGGACGGCGGRSSSVSCRRYASSVIGGGSYGGAACGGYGGSLSMGSLAGGFGGGFAGSCGPGGDLLLSGNEKVTMQNLNDRLASYLDKVRRLEEENAQLEHHIREWYRKQAPSVSKDYSSYYQTIEQLQNQIISATVDNNRMILDIDNSKMTADDFRMKYENELVIRQTVEADINGLRNILDGLTTTRSSLESELESLKDELIALKRNHEEEMRQLQSQTGGDVSVEVNAAPGEDLTKTLNDLRNEYEEIIARNRKEVEQWYEVKIQEVNQQVTSSSQDIQTSSHQLTELRREMQNLEIELQAQLSTKSSLENSLAETESRYGRMLQQIQGQINCVEEELASIRCEVESQSQEYKMLLGIKMRLEQEIQQYRALLQEGQQDLVSSQGALQGGGMSSHSYSSSSYCHGQSSDKAGQSRVC
SIO_010081: LOC104697800
subclass of: SO_0000673
so part of: LOC104697800
location: complement(join(732612..732631,732942..733033,733584..733810,733903..734028,734192..734353,734713..734869,735022..735104,735929..736375))
location: region:732612-736375:-1
so has part: feature:735929-736375:-1:exon
so has part: feature:735022-735104:-1:exon
so has part: feature:734713-734869:-1:exon
so has part: feature:734192-734353:-1:exon
so has part: feature:733903-734028:-1:exon
so has part: feature:733584-733810:-1:exon
so has part: feature:732942-733033:-1:exon
so has part: feature:732612-732631:-1:exon

XP_019149348.2
type: Protein
SIO_000068: ncbiprotein

position:732612:-1
position: 732612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:736375:-1
position: 736375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:735929-736375:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:735022-735104:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:734713-734869:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:734192-734353:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:733903-734028:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:733584-733810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:732942-733033:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:732612-732631:-1:exon

LOC109146396
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC109146396
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(741432..745047)
location: region:741432-745047:-1
so has part: feature:741432-745047:-1:exon
subclass of: SO_0000010

109146396
type: Gene
SIO_000068: ncbigene

position:741432:-1
position: 741432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:745047:-1
position: 745047
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:741432-745047:-1:exon

LOC109146396
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC109146396
product: keratin, type I cytoskeletal 15-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 180 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_039565628.1
SIO_010081: LOC109146396
subclass of: SO_0000673
so part of: LOC109146396
location: complement(join(741432..741716,742135..742223,742373..742599,742692..742817,742982..743143,743343..743499,743690..743772,744538..745047))
location: region:741432-745047:-1
so has part: feature:744538-745047:-1:exon
so has part: feature:743690-743772:-1:exon
so has part: feature:743343-743499:-1:exon
so has part: feature:742982-743143:-1:exon
so has part: feature:742692-742817:-1:exon
so has part: feature:742373-742599:-1:exon
so has part: feature:742135-742223:-1:exon
so has part: feature:741432-741716:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:744538-745047:-1:exon

position:744538:-1
position: 744538
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:743690-743772:-1:exon

position:743690:-1
position: 743690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:743772:-1
position: 743772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:743343-743499:-1:exon

position:743343:-1
position: 743343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:743499:-1
position: 743499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:742982-743143:-1:exon

position:742982:-1
position: 742982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:743143:-1
position: 743143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:742692-742817:-1:exon

position:742692:-1
position: 742692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:742817:-1
position: 742817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:742373-742599:-1:exon

position:742373:-1
position: 742373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:742599:-1
position: 742599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:742135-742223:-1:exon

position:742135:-1
position: 742135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:742223:-1
position: 742223
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:741432-741716:-1:exon

position:741716:-1
position: 741716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC109146396
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC109146396
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: keratin, type I cytoskeletal 15-like
translation: MSCSIKRTSSTSYRSGGGGGGACGGSSGRSSSVSCRRYASSVIGGGSYGGAACGGYGGSLSMGSLAGGFGGGFAGSCGPGDLLLSGNEKVTMQNLNDRLASYLDKVRRLEEENAQLEHHIREWYRKQAPSVSKDYSSYYQTIEQLQNQIISATVDNNRMLLDIDNSKMTADDFRMKYENELVIRQTVEADINGLRNLMDDLTLVRSSLESELESLKDELIALKRNHEEEMRQLQSQTGGDVSVEVNAAPGEDLTKTLNDLRNEYEEIIARNRKEVEQWYEVKIQEVNQQVTSSSQDIQTSSHQLTELRREMQNLEIELQAQLSTKSSLENSLAETESRYGCLLQQIQGQINCVEEELASIRCEMESQSQEYKMLLGIKTRLEQEIQQYRALLQEGQQDLVASQGAFQGGGKSSQSYSASYSHSQCGDMSGQSRVC
SIO_010081: LOC109146396
subclass of: SO_0000673
so part of: LOC109146396
location: complement(join(741697..741716,742135..742223,742373..742599,742692..742817,742982..743143,743343..743499,743690..743772,744538..744983))
location: region:741697-744983:-1
so has part: feature:744538-744983:-1:exon
so has part: feature:743690-743772:-1:exon
so has part: feature:743343-743499:-1:exon
so has part: feature:742982-743143:-1:exon
so has part: feature:742692-742817:-1:exon
so has part: feature:742373-742599:-1:exon
so has part: feature:742135-742223:-1:exon
so has part: feature:741697-741716:-1:exon

XP_039421562.1
type: Protein
SIO_000068: ncbiprotein

position:741697:-1
position: 741697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:744983:-1
position: 744983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:744538-744983:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:743690-743772:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:743343-743499:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:742982-743143:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:742692-742817:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:742373-742599:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:742135-742223:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:741697-741716:-1:exon

LOC104697746
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697746
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(748003..753752)
location: region:748003-753752:-1
so has part: feature:748003-753752:-1:exon
subclass of: SO_0000010

104697746
type: Gene
SIO_000068: ncbigene

position:748003:-1
position: 748003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:753752:-1
position: 753752
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:748003-753752:-1:exon

LOC104697746
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697746
product: keratin, type I cytoskeletal 13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 195 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XM_010412763.4
SIO_010081: LOC104697746
subclass of: SO_0000673
so part of: LOC104697746
location: complement(join(748003..748326,748766..749106,749839..750065,750284..750409,750760..750921,751521..751677,752121..752203,752980..753752))
location: region:748003-753752:-1
so has part: feature:752980-753752:-1:exon
so has part: feature:752121-752203:-1:exon
so has part: feature:751521-751677:-1:exon
so has part: feature:750760-750921:-1:exon
so has part: feature:750284-750409:-1:exon
so has part: feature:749839-750065:-1:exon
so has part: feature:748766-749106:-1:exon
so has part: feature:748003-748326:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:752980-753752:-1:exon

position:752980:-1
position: 752980
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:752121-752203:-1:exon

position:752121:-1
position: 752121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:752203:-1
position: 752203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:751521-751677:-1:exon

position:751521:-1
position: 751521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:751677:-1
position: 751677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:750760-750921:-1:exon

position:750760:-1
position: 750760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750921:-1
position: 750921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:750284-750409:-1:exon

position:750284:-1
position: 750284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750409:-1
position: 750409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:749839-750065:-1:exon

position:749839:-1
position: 749839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:750065:-1
position: 750065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:748766-749106:-1:exon

position:748766:-1
position: 748766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:749106:-1
position: 749106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:748003-748326:-1:exon

position:748326:-1
position: 748326
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104697746
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697746
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 13-like
translation: MSCGTKSSSSTIRISSGGGGGGGGGGGGGRCSGGGGGGGRSGGYSSVSSRKYTSSGGSGGFSGRSFGGGGSRSSYGGGFSSGSCGRISRSSYGGRMSGGSYGGGMSCGSMGGGFGSGGGGFGGMGGGYGGGGYSGGGFSGFGGSGGFGGGGSYGGGSFGGMGFGEDSGLLSTNEKLTMQNLNDRLASYMDKVRRLEEENAQLEQLIREWYRNQAPSQNKDYSQYYRTIEELQNQIVGANVDLNRMLLDMDNTRMTVDDFRLKYETEYTLHQSVASDINGLRPLLDQLTLSRSDLETQFESLKEELIFLKKNHEEEMRGLQSQSGGDVNVEVNATPGINLMEKLNEMRSEYERLIENNRKEVESWYETKMEEVNQQVHSSGQEIQSSNQQISELRREYQSLEIELQSQISMVDSLQSNLEDTERRYNMQLQQIQGMIGPLEEELASIRCEMESQNEEYKMLLGIKTRLEQEIQQYRVLLEEGQQDLVIPSGGMGGGMGGGRTGGGSYSGGGRGGGGSMSGGYGGGGSGIGGGMGGGTGGGGIGGGSGGMGGGSGGMGGGSGGGCIVGGGGGGRTSGGISSSHSYSSSSQSQSCRSGGESQGYGRKSFD
SIO_010081: LOC104697746
subclass of: SO_0000673
so part of: LOC104697746
location: complement(join(748301..748326,748766..749106,749839..750065,750284..750409,750760..750921,751521..751677,752121..752203,752980..753681))
location: region:748301-753681:-1
so has part: feature:752980-753681:-1:exon
so has part: feature:752121-752203:-1:exon
so has part: feature:751521-751677:-1:exon
so has part: feature:750760-750921:-1:exon
so has part: feature:750284-750409:-1:exon
so has part: feature:749839-750065:-1:exon
so has part: feature:748766-749106:-1:exon
so has part: feature:748301-748326:-1:exon

XP_010411065.2
type: Protein
SIO_000068: ncbiprotein

position:748301:-1
position: 748301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:753681:-1
position: 753681
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:752980-753681:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:752121-752203:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:751521-751677:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:750760-750921:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:750284-750409:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:749839-750065:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:748766-749106:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:748301-748326:-1:exon

LOC109146397
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC109146397
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 755322..760283
location: region:755322-760283:1
so has part: feature:755322-760283:1:exon
subclass of: SO_0000011

109146397
type: Gene
SIO_000068: ncbigene

position:755322:1
position: 755322
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:760283:1
position: 760283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:755322-760283:1:exon

LOC109146397
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC109146397
product: uncharacterized LOC109146397, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
transcript id: XR_002048386.2
SIO_010081: LOC109146397
subclass of: SO_0000673
so part of: LOC109146397
location: join(755322..755499,755933..760283)
location: region:755322-760283:1
so has part: feature:755322-755499:1:exon
so has part: feature:755933-760283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:755322-755499:1:exon

position:755499:1
position: 755499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:755933-760283:1:exon

position:755933:1
position: 755933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC109146397
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC109146397
product: uncharacterized LOC109146397, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XR_002048387.2
SIO_010081: LOC109146397
subclass of: SO_0000673
so part of: LOC109146397
location: join(755322..755499,755933..756020,756544..760283)
location: region:755322-760283:1
so has part: feature:755322-755499:1:exon
so has part: feature:755933-756020:1:exon
so has part: feature:756544-760283:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:755322-755499:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:755933-756020:1:exon

position:756020:1
position: 756020
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:756544-760283:1:exon

position:756544:1
position: 756544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104697747
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697747
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(760183..765344)
location: region:760183-765344:-1
so has part: feature:760183-765344:-1:exon
subclass of: SO_0000010

104697747
type: Gene
SIO_000068: ncbigene

position:760183:-1
position: 760183
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:765344:-1
position: 765344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:760183-765344:-1:exon

LOC104697747
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697747
product: keratin, type I cytoskeletal 9-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 195 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_019293861.2
SIO_010081: LOC104697747
subclass of: SO_0000673
so part of: LOC104697747
location: complement(join(760183..760497,761894..762192,762480..762706,762902..763027,763305..763466,763719..763875,764476..764558,764647..765344))
location: region:760183-765344:-1
so has part: feature:764647-765344:-1:exon
so has part: feature:764476-764558:-1:exon
so has part: feature:763719-763875:-1:exon
so has part: feature:763305-763466:-1:exon
so has part: feature:762902-763027:-1:exon
so has part: feature:762480-762706:-1:exon
so has part: feature:761894-762192:-1:exon
so has part: feature:760183-760497:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:764647-765344:-1:exon

position:764647:-1
position: 764647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:764476-764558:-1:exon

position:764476:-1
position: 764476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:764558:-1
position: 764558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:763719-763875:-1:exon

position:763719:-1
position: 763719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763875:-1
position: 763875
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:763305-763466:-1:exon

position:763305:-1
position: 763305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763466:-1
position: 763466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:762902-763027:-1:exon

position:762902:-1
position: 762902
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:763027:-1
position: 763027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:762480-762706:-1:exon

position:762480:-1
position: 762480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:762706:-1
position: 762706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:761894-762192:-1:exon

position:761894:-1
position: 761894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:762192:-1
position: 762192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:760183-760497:-1:exon

position:760497:-1
position: 760497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104697747
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697747
product: keratin, type I cytoskeletal 9-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 196 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
transcript id: XM_010412764.3
SIO_010081: LOC104697747
subclass of: SO_0000673
so part of: LOC104697747
location: complement(join(760183..760497,761339..761440,761894..762192,762480..762706,762902..763027,763305..763466,763719..763875,764476..764558,764647..765343))
location: region:760183-765343:-1
so has part: feature:764647-765343:-1:exon
so has part: feature:764476-764558:-1:exon
so has part: feature:763719-763875:-1:exon
so has part: feature:763305-763466:-1:exon
so has part: feature:762902-763027:-1:exon
so has part: feature:762480-762706:-1:exon
so has part: feature:761894-762192:-1:exon
so has part: feature:761339-761440:-1:exon
so has part: feature:760183-760497:-1:exon

position:765343:-1
position: 765343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:764647-765343:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:764476-764558:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:763719-763875:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:763305-763466:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:762902-763027:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:762480-762706:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:761894-762192:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:761339-761440:-1:exon

position:761339:-1
position: 761339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:761440:-1
position: 761440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:760183-760497:-1:exon

LOC104697747
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697747
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 9-like isoform X2
translation: MSCSSKQPLKSCLRGSSGGGGEGSSSHSSASSRTITSRTSGGGRFSGSSCGGGSSRSSCSGGSGGYGRRSSYGGGMSSSSCGGRLGGGCYGGGMGHSSMGTGFRSGGSGFGGRFGGGFGGGGAGFSSGSFGSGGFYGGNVGILSNDEKLTMQSLNERLASYMETVRNLEKENAQLEQLIREWYQKQGPIGPKDYSHYYEKIEELQKQILIAAVETHKVLLDLDNTKMTAEDFRIKYEMESGLRQNVESDLNSLRPLLDNLTLTKSDLEMQFESLKEEIIDLKKNHEEEMKLLQSQSNGDVNVKMNAAPGEDLLKKLNEMRQEYEAIIQKNRAEVEKWYEGKMEEVSQQVHSSSQEMEASNQQISVLRREFQSLEIELQSQISLVDSLQSNLEDTERRYNMQLQQIQGMIGPLEEELASIRCEMESQNEEYKMLLGIKTRLEQEIQQYRVLLEEGQQGISTSQGGAGSGSSGGGGHGGSSGGGSCWSSGGGSSGGKTGGSYGRSSSSESGGGGSGGRTGGTCGKTSGGGGGSGGGGGGKSCLSRSSSSQSQPGNSCESPGSFRKVEE
SIO_010081: LOC104697747
subclass of: SO_0000673
so part of: LOC104697747
location: complement(join(760472..760497,761894..762192,762480..762706,762902..763027,763305..763466,763719..763875,764476..764558,764647..765267))
location: region:760472-765267:-1
so has part: feature:764647-765267:-1:exon
so has part: feature:764476-764558:-1:exon
so has part: feature:763719-763875:-1:exon
so has part: feature:763305-763466:-1:exon
so has part: feature:762902-763027:-1:exon
so has part: feature:762480-762706:-1:exon
so has part: feature:761894-762192:-1:exon
so has part: feature:760472-760497:-1:exon

XP_019149406.1
type: Protein
SIO_000068: ncbiprotein

position:760472:-1
position: 760472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:765267:-1
position: 765267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:764647-765267:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:764476-764558:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:763719-763875:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:763305-763466:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:762902-763027:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:762480-762706:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:761894-762192:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:760472-760497:-1:exon

LOC104697747
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104697747
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: keratin, type I cytoskeletal 10-like isoform X1
translation: MSCSSKQPLKSCLRGSSGGGGEGSSSHSSASSRTITSRTSGGGRFSGSSCGGGSSRSSCSGGSGGYGRRSSYGGGMSSSSCGGRLGGGCYGGGMGHSSMGTGFRSGGSGFGGRFGGGFGGGGAGFSSGSFGSGGFYGGNVGILSNDEKLTMQSLNERLASYMETVRNLEKENAQLEQLIREWYQKQGPIGPKDYSHYYEKIEELQKQILIAAVETHKVLLDLDNTKMTAEDFRIKYEMESGLRQNVESDLNSLRPLLDNLTLTKSDLEMQFESLKEEIIDLKKNHEEEMKLLQSQSNGDVNVKMNAAPGEDLLKKLNEMRQEYEAIIQKNRAEVEKWYEGKMEEVSQQVHSSSQEMEASNQQISVLRREFQSLEIELQSQISLVDSLQSNLEDTERRYNMQLQQIQGMIGPLEEELASIRCEMESQNEEYKMLLGIKTRLEQEIQQYRVLLEEGQQGISTSQGGAGSGSSGGGGHGGSSGGGSCWSSGGGSSGGKTGGSYGRSSSSESGGGGSGGRTGGTCGKTSGGGGGSGGGGGGKSCLSRSSSSQSQPGNSCESPGGAENMKLCLEGNKTLERGATMEEVSEAIKHMRMGSFRKVEE
SIO_010081: LOC104697747
subclass of: SO_0000673
so part of: LOC104697747
location: complement(join(760472..760497,761339..761440,761894..762192,762480..762706,762902..763027,763305..763466,763719..763875,764476..764558,764647..765267))
location: region:760472-765267:-1
so has part: feature:764647-765267:-1:exon
so has part: feature:764476-764558:-1:exon
so has part: feature:763719-763875:-1:exon
so has part: feature:763305-763466:-1:exon
so has part: feature:762902-763027:-1:exon
so has part: feature:762480-762706:-1:exon
so has part: feature:761894-762192:-1:exon
so has part: feature:761339-761440:-1:exon
so has part: feature:760472-760497:-1:exon

XP_010411066.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:764647-765267:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:764476-764558:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:763719-763875:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:763305-763466:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:762902-763027:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:762480-762706:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:761894-762192:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:761339-761440:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:760472-760497:-1:exon

LOC104697748
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104697748
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(772464..777814)
location: region:772464-777814:-1
so has part: feature:772464-777814:-1:exon
subclass of: SO_0000010

104697748
type: Gene
SIO_000068: ncbigene

position:772464:-1
position: 772464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:777814:-1
position: 777814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:772464-777814:-1:exon

LOC104697748
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104697748
product: keratin, type I cytoskeletal 13-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 216 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
transcript id: XM_010412766.2
SIO_010081: LOC104697748
subclass of: SO_0000673
so part of: LOC104697748
location: complement(join(772464..772762,773307..773425,773888..774114,774295..774420,774862..775023,775433..775589,776085..776167,777210..777814))
location: region:772464-777814:-1
so has part: feature:777210-777814:-1:exon
so has part: feature:776085-776167:-1:exon
so has part: feature:775433-775589:-1:exon
so has part: feature:774862-775023:-1:exon
so has part: feature:774295-774420:-1:exon
so has part: feature:773888-774114:-1:exon
so has part: feature:773307-773425:-1:exon
so has part: feature:772464-772762:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:777210-777814:-1:exon

position:777210:-1
position: 777210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:776085-776167:-1:exon

position:776085:-1
position: 776085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:776167:-1
position: 776167
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:775433-775589:-1:exon

position:775433:-1
position: 775433
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:775589:-1
position: 775589
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:774862-775023:-1:exon