Corvus cornix cornix isolate S_Up_H32 chromosome 24, ASM73873v5, whole genome shotgun sequence.
type: Entry
definition: Corvus cornix cornix isolate S_Up_H32 chromosome 24, ASM73873v5, whole genome shotgun sequence.
sequence version: NC_046353.1
sequence date: 2021-02-16
sequence: sequence
division: CON
label: NC_046353.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA258180
dblink: SAMN02143031
keyword: WGS
keyword: RefSeq
source: Corvus cornix cornix
organism: Corvus cornix cornix
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus.
reference: 1
references: 28360231
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM022206.2.\nAssembly name: ASM73873v5\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Uppsala University on\n2021/02/04. The original whole-genome shotgun project has the\naccession JPSR00000000.4.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Uppsala University\nAssembly Method :: FALCON-Unzip v. 0.4.0\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 150.0x\nSequencing Technology :: PacBio; Hi-C\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Corvus cornix cornix Annotation\n Release 104\nAnnotation Version :: 104\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.5\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 6833524
topology: linear
so has quality: SO_0000987
location: 1..6833524
location: region:1-6833524:1
RO_0002162: 932674

NC_046353
type: RefSeq
SIO_000068: refseq

PRJNA258180
type: BioProject
SIO_000068: bioproject

SAMN02143031
type: BioSample
SIO_000068: biosample

1
title: Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
author: Weissensteiner, M.H.
author: Pang, A.W.C.
author: Bunikis, I.
author: Hoijer, I.
author: Vinnere-Petterson, O.
author: Suh, A.
author: Wolf, J.B.W.
journal: Genome Res.
volume: 27
issue: 5
pages: 697-708
year: 2017
pubmed: 28360231

28360231
type: PubMed
SIO_000068: pubmed

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6833524:1
position: 6833524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6833524:1:source
so part of: sequence
organism: Corvus cornix cornix
mol type: genomic DNA
isolate: S_Up_H32
sub species: cornix
chromosome: 24
sex: male
tissue type: blood
country: Sweden: Uppsala
collection date: 2010

932674
type: Taxonomy
SIO_000068: taxonomy

C2CD2L
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: C2CD2L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(3222..24422)
location: region:3222-24422:-1
so has part: feature:3222-24422:-1:exon
subclass of: SO_0000010

104692159
type: Gene
SIO_000068: ncbigene

position:3222:-1
position: 3222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24422:-1
position: 24422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3222-24422:-1:exon

C2CD2L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: C2CD2L
product: C2CD2 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
transcript id: XM_039564925.1
SIO_010081: C2CD2L
subclass of: SO_0000673
so part of: C2CD2L
location: complement(join(3222..4380,8804..9013,10408..10690,11188..11321,11961..12062,13409..13580,13889..14016,14614..14678,15217..15340,15506..15623,16251..16364,17221..17331,19241..19360,19742..19837,24110..24422))
location: region:3222-24422:-1
so has part: feature:24110-24422:-1:exon
so has part: feature:19742-19837:-1:exon
so has part: feature:19241-19360:-1:exon
so has part: feature:17221-17331:-1:exon
so has part: feature:16251-16364:-1:exon
so has part: feature:15506-15623:-1:exon
so has part: feature:15217-15340:-1:exon
so has part: feature:14614-14678:-1:exon
so has part: feature:13889-14016:-1:exon
so has part: feature:13409-13580:-1:exon
so has part: feature:11961-12062:-1:exon
so has part: feature:11188-11321:-1:exon
so has part: feature:10408-10690:-1:exon
so has part: feature:8804-9013:-1:exon
so has part: feature:3222-4380:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24110-24422:-1:exon

position:24110:-1
position: 24110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19742-19837:-1:exon

position:19742:-1
position: 19742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19837:-1
position: 19837
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:19241-19360:-1:exon

position:19241:-1
position: 19241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19360:-1
position: 19360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:17221-17331:-1:exon

position:17221:-1
position: 17221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17331:-1
position: 17331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:16251-16364:-1:exon

position:16251:-1
position: 16251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16364:-1
position: 16364
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:15506-15623:-1:exon

position:15506:-1
position: 15506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15623:-1
position: 15623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:15217-15340:-1:exon

position:15217:-1
position: 15217
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15340:-1
position: 15340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:14614-14678:-1:exon

position:14614:-1
position: 14614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14678:-1
position: 14678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:13889-14016:-1:exon

position:13889:-1
position: 13889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14016:-1
position: 14016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:13409-13580:-1:exon

position:13409:-1
position: 13409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13580:-1
position: 13580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:11961-12062:-1:exon

position:11961:-1
position: 11961
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12062:-1
position: 12062
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:11188-11321:-1:exon

position:11188:-1
position: 11188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11321:-1
position: 11321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:10408-10690:-1:exon

position:10408:-1
position: 10408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10690:-1
position: 10690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:8804-9013:-1:exon

position:8804:-1
position: 8804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9013:-1
position: 9013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:3222-4380:-1:exon

position:4380:-1
position: 4380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C2CD2L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: C2CD2L
product: C2CD2 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns
transcript id: XM_039564924.1
SIO_010081: C2CD2L
subclass of: SO_0000673
so part of: C2CD2L
location: complement(join(3222..8292,8804..9013,10408..10690,11188..11321,11961..12062,13409..13580,13889..14016,14614..14678,15217..15340,15506..15623,16251..16364,17221..17331,19241..19360,19742..19837,24110..24422))
location: region:3222-24422:-1
so has part: feature:24110-24422:-1:exon
so has part: feature:19742-19837:-1:exon
so has part: feature:19241-19360:-1:exon
so has part: feature:17221-17331:-1:exon
so has part: feature:16251-16364:-1:exon
so has part: feature:15506-15623:-1:exon
so has part: feature:15217-15340:-1:exon
so has part: feature:14614-14678:-1:exon
so has part: feature:13889-14016:-1:exon
so has part: feature:13409-13580:-1:exon
so has part: feature:11961-12062:-1:exon
so has part: feature:11188-11321:-1:exon
so has part: feature:10408-10690:-1:exon
so has part: feature:8804-9013:-1:exon
so has part: feature:3222-8292:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24110-24422:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19742-19837:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:19241-19360:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17221-17331:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:16251-16364:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15506-15623:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15217-15340:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14614-14678:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13889-14016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13409-13580:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11961-12062:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11188-11321:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:10408-10690:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8804-9013:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:3222-8292:-1:exon

position:8292:-1
position: 8292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

C2CD2L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: C2CD2L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid transfer protein C2CD2L isoform X2
translation: MGPDLGWAALVLLFAASLLTVAAWLLQYWRSAALRAPRRRGAAAEEAGARALLAALLALRSLREQWQRAWVRALNSQARRHGSSVQITFEEGPQLPQAANISCVTCKGQSDHSMVLCCHLSAEAVKFPVSVTQQSPAAVSVDSYHVTLAVLQAQVEIHLEEIQNEGLLVSWTFKDRPNLDLLVLPRLELPEDEGRADLSTIKDLIEDTIVSTKPAMTVNLMAITAGASAVPSNKLTRESPSGVAAAPLGSKLLLRNLRVLNLGCQGKGGVGEIRCVAELDSPPQQKWTRPMPSGSVGAAGEMEWTDEFFLELGPRSKELKLQVLGNSDGGGNVLLAYATLLIDSSGKQPSGRQVCSLVPGAGQSLTAEATITLELLFQEAPASLNAHHGASLRTSITPTKKVEMDRTIMPDGTIVTTVTTIQSRPKADCKLDSPSRSPSKVEVTEKKTTVLLETSCPHGHLPSGSRDSHMPNGLDPVAETAIRQLTETNNKTIKKTPTKRSTLIISGVSKVPIAQDEMALSLGYAASLEATVYGDSEAEGTAERMHDSTELSRPLEASPLGQRDSQELDETTRSDISERPSVEDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRSKQKEAGLSQSHDDLSNVTANSATRKKTGSFSHRLIKRFSFKSKSKPKGSDDTSAGKAF
SIO_010081: C2CD2L
subclass of: SO_0000673
so part of: C2CD2L
location: complement(join(4367..4380,8804..9013,10408..10690,11188..11321,11961..12062,13409..13580,13889..14016,14614..14678,15217..15340,15506..15623,16251..16364,17221..17331,19241..19360,19742..19837,24110..24355))
location: region:4367-24355:-1
so has part: feature:24110-24355:-1:exon
so has part: feature:19742-19837:-1:exon
so has part: feature:19241-19360:-1:exon
so has part: feature:17221-17331:-1:exon
so has part: feature:16251-16364:-1:exon
so has part: feature:15506-15623:-1:exon
so has part: feature:15217-15340:-1:exon
so has part: feature:14614-14678:-1:exon
so has part: feature:13889-14016:-1:exon
so has part: feature:13409-13580:-1:exon
so has part: feature:11961-12062:-1:exon
so has part: feature:11188-11321:-1:exon
so has part: feature:10408-10690:-1:exon
so has part: feature:8804-9013:-1:exon
so has part: feature:4367-4380:-1:exon

XP_039420859.1
type: Protein
SIO_000068: ncbiprotein

position:4367:-1
position: 4367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24355:-1
position: 24355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24110-24355:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19742-19837:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:19241-19360:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17221-17331:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:16251-16364:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15506-15623:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15217-15340:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14614-14678:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13889-14016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13409-13580:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11961-12062:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11188-11321:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:10408-10690:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8804-9013:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:4367-4380:-1:exon

C2CD2L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: C2CD2L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: phospholipid transfer protein C2CD2L isoform X1
translation: MGPDLGWAALVLLFAASLLTVAAWLLQYWRSAALRAPRRRGAAAEEAGARALLAALLALRSLREQWQRAWVRALNSQARRHGSSVQITFEEGPQLPQAANISCVTCKGQSDHSMVLCCHLSAEAVKFPVSVTQQSPAAVSVDSYHVTLAVLQAQVEIHLEEIQNEGLLVSWTFKDRPNLDLLVLPRLELPEDEGRADLSTIKDLIEDTIVSTKPAMTVNLMAITAGASAVPSNKLTRESPSGVAAAPLGSKLLLRNLRVLNLGCQGKGGVGEIRCVAELDSPPQQKWTRPMPSGSVGAAGEMEWTDEFFLELGPRSKELKLQVLGNSDGGGNVLLAYATLLIDSSGKQPSGRQVCSLVPGAGQSLTAEATITLELLFQEAPASLNAHHGASLRTSITPTKKVEMDRTIMPDGTIVTTVTTIQSRPKADCKLDSPSRSPSKVEVTEKKTTVLLETSCPHGHLPSGSRDSHMPNGLDPVAETAIRQLTETNNKTIKKTPTKRSTLIISGVSKVPIAQDEMALSLGYAASLEATVYGDSEAEGTAERMHDSTELSRPLEASPLGQRDSQELDETTRSDISERPSVEDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRSKQKEAGLSQSHDDLSNVTANSATRKKTGSFSHRLIKRFSFKSKSKPKGSDDTSAEAVT
SIO_010081: C2CD2L
subclass of: SO_0000673
so part of: C2CD2L
location: complement(join(8279..8292,8804..9013,10408..10690,11188..11321,11961..12062,13409..13580,13889..14016,14614..14678,15217..15340,15506..15623,16251..16364,17221..17331,19241..19360,19742..19837,24110..24355))
location: region:8279-24355:-1
so has part: feature:24110-24355:-1:exon
so has part: feature:19742-19837:-1:exon
so has part: feature:19241-19360:-1:exon
so has part: feature:17221-17331:-1:exon
so has part: feature:16251-16364:-1:exon
so has part: feature:15506-15623:-1:exon
so has part: feature:15217-15340:-1:exon
so has part: feature:14614-14678:-1:exon
so has part: feature:13889-14016:-1:exon
so has part: feature:13409-13580:-1:exon
so has part: feature:11961-12062:-1:exon
so has part: feature:11188-11321:-1:exon
so has part: feature:10408-10690:-1:exon
so has part: feature:8804-9013:-1:exon
so has part: feature:8279-8292:-1:exon

XP_039420858.1
type: Protein
SIO_000068: ncbiprotein

position:8279:-1
position: 8279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24110-24355:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19742-19837:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:19241-19360:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:17221-17331:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:16251-16364:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:15506-15623:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:15217-15340:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:14614-14678:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:13889-14016:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:13409-13580:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:11961-12062:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:11188-11321:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:10408-10690:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:8804-9013:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:8279-8292:-1:exon

DPAGT1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: DPAGT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 25640..31144
location: region:25640-31144:1
so has part: feature:25640-31144:1:exon
subclass of: SO_0000010

104692037
type: Gene
SIO_000068: ncbigene

position:25640:1
position: 25640
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31144:1
position: 31144
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25640-31144:1:exon

DPAGT1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: DPAGT1
product: dolichyl-phosphate N-acetylglucosaminephosphotransferase 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564926.1
SIO_010081: DPAGT1
subclass of: SO_0000673
so part of: DPAGT1
location: join(25640..26112,26196..26316,26402..26615,27159..27305,27438..27522,27976..28164,28802..28889,29235..29390,30566..31144)
location: region:25640-31144:1
so has part: feature:25640-26112:1:exon
so has part: feature:26196-26316:1:exon
so has part: feature:26402-26615:1:exon
so has part: feature:27159-27305:1:exon
so has part: feature:27438-27522:1:exon
so has part: feature:27976-28164:1:exon
so has part: feature:28802-28889:1:exon
so has part: feature:29235-29390:1:exon
so has part: feature:30566-31144:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:25640-26112:1:exon

position:26112:1
position: 26112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:26196-26316:1:exon

position:26196:1
position: 26196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26316:1
position: 26316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:26402-26615:1:exon

position:26402:1
position: 26402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26615:1
position: 26615
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:27159-27305:1:exon

position:27159:1
position: 27159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27305:1
position: 27305
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:27438-27522:1:exon

position:27438:1
position: 27438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27522:1
position: 27522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:27976-28164:1:exon

position:27976:1
position: 27976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28164:1
position: 28164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:28802-28889:1:exon

position:28802:1
position: 28802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28889:1
position: 28889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:29235-29390:1:exon

position:29235:1
position: 29235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29390:1
position: 29390
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:30566-31144:1:exon

position:30566:1
position: 30566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DPAGT1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: DPAGT1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase
translation: MAAWPAVPLLINLGGSLLGFVATVTLIPAFTDRFVAARLFGEDLNKTSRRPVPEAQGVISGAVFLIILFCFIPVPFLRCFVEEQCAAFPHDEFVELIGSLLAICCMIFLGFADDVLNLRWRHKLLLPTMASLPLLMVYFTNFGNTTIVVPKPFRLLLGMHLDLGILYYVYMGMLAVFCTNAINILAGINGIEAGQSLVIAASIIIFNIVELNGDYRDDHIFSLYFMIPFFFTTLGLFYHNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFIPQVLNFLYSLPQLFHVIPCPRHRLPRLNASTGKLEMSYSKFKTRSLSALGTNILKVVKILHVVDVRSGMDEDGEYTECNNMTLINFVIKLIGPTHERNLTLLLLLIQVLGSMIAFSIRYQLVRLFYDV
SIO_010081: DPAGT1
subclass of: SO_0000673
so part of: DPAGT1
location: join(25958..26112,26196..26316,26402..26615,27159..27305,27438..27522,27976..28164,28802..28889,29235..29390,30566..30631)
location: region:25958-30631:1
so has part: feature:25958-26112:1:exon
so has part: feature:26196-26316:1:exon
so has part: feature:26402-26615:1:exon
so has part: feature:27159-27305:1:exon
so has part: feature:27438-27522:1:exon
so has part: feature:27976-28164:1:exon
so has part: feature:28802-28889:1:exon
so has part: feature:29235-29390:1:exon
so has part: feature:30566-30631:1:exon

XP_039420860.1
type: Protein
SIO_000068: ncbiprotein

position:25958:1
position: 25958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30631:1
position: 30631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25958-26112:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:26196-26316:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:26402-26615:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:27159-27305:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:27438-27522:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:27976-28164:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:28802-28889:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:29235-29390:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:30566-30631:1:exon

LOC120411244
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411244
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 31241..33909
location: region:31241-33909:1
so has part: feature:31241-33909:1:exon
subclass of: SO_0000010

120411244
type: Gene
SIO_000068: ncbigene

position:31241:1
position: 31241
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33909:1
position: 33909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31241-33909:1:exon

LOC120411244
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC120411244
product: late histone H2A.L3
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039564929.1
SIO_010081: LOC120411244
subclass of: SO_0000673
so part of: LOC120411244
location: 31241..33909
location: region:31241-33909:1
so has part: feature:31241-33909:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31241-33909:1:exon

LOC120411244
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC120411244
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: late histone H2A.L3
translation: MSGRGKSGAKARAKAKSRSPRARLQFPVGRLHRLLRRGXFAPAYLPAVLEYLXILDPASAVARESENTLIKPRPAVLALRNDEQLNKLLSIVPIAQGGXLPHTQPVLPARNTGAGARRDAEAEYGPLSLPENCDPWRRREGDERCGRRPWLRRGRGDRNRP
SIO_010081: LOC120411244
subclass of: SO_0000673
so part of: LOC120411244
location: 33299..33780
location: region:33299-33780:1
so has part: feature:33299-33780:1:exon

XP_039420863.1
type: Protein
SIO_000068: ncbiprotein

position:33299:1
position: 33299
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33780:1
position: 33780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33299-33780:1:exon

HMBS
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: HMBS
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(33954..44470)
location: region:33954-44470:-1
so has part: feature:33954-44470:-1:exon
subclass of: SO_0000010

104692039
type: Gene
SIO_000068: ncbigene

position:33954:-1
position: 33954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:44470:-1
position: 44470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33954-44470:-1:exon

HMBS
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: HMBS
product: hydroxymethylbilane synthase
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 21 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564928.1
SIO_010081: HMBS
subclass of: SO_0000673
so part of: HMBS
location: complement(join(33954..34484,34693..34779,35339..35392,35627..35746,36636..36674,37179..37292,38004..38079,40248..40325,40649..40726,41831..41886,41985..42034,42706..42778,44325..44470))
location: region:33954-44470:-1
so has part: feature:44325-44470:-1:exon
so has part: feature:42706-42778:-1:exon
so has part: feature:41985-42034:-1:exon
so has part: feature:41831-41886:-1:exon
so has part: feature:40649-40726:-1:exon
so has part: feature:40248-40325:-1:exon
so has part: feature:38004-38079:-1:exon
so has part: feature:37179-37292:-1:exon
so has part: feature:36636-36674:-1:exon
so has part: feature:35627-35746:-1:exon
so has part: feature:35339-35392:-1:exon
so has part: feature:34693-34779:-1:exon
so has part: feature:33954-34484:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:44325-44470:-1:exon

position:44325:-1
position: 44325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:42706-42778:-1:exon

position:42706:-1
position: 42706
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42778:-1
position: 42778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:41985-42034:-1:exon

position:41985:-1
position: 41985
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42034:-1
position: 42034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:41831-41886:-1:exon

position:41831:-1
position: 41831
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:41886:-1
position: 41886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:40649-40726:-1:exon

position:40649:-1
position: 40649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40726:-1
position: 40726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:40248-40325:-1:exon

position:40248:-1
position: 40248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:40325:-1
position: 40325
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:38004-38079:-1:exon

position:38004:-1
position: 38004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:38079:-1
position: 38079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:37179-37292:-1:exon

position:37179:-1
position: 37179
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37292:-1
position: 37292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:36636-36674:-1:exon

position:36636:-1
position: 36636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36674:-1
position: 36674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:35627-35746:-1:exon

position:35627:-1
position: 35627
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35746:-1
position: 35746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:35339-35392:-1:exon

position:35339:-1
position: 35339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:35392:-1
position: 35392
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:34693-34779:-1:exon

position:34693:-1
position: 34693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:34779:-1
position: 34779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:33954-34484:-1:exon

position:34484:-1
position: 34484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HMBS
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: HMBS
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: porphobilinogen deaminase
translation: MAEPGAAAGGRGRAESGGGADAAGADPLLPXGENGVDGRAVRVGTRRSQLARIQTDSVVMMLRELYPDLCFEIVAMSTTGDKILDTALSKIGEKSLFTKELENALERNEVDLVVHSLKDLPTSLPPGFTIGAVCKRENPLDAVVFHPKNCGKTLSLLPEKSVIGTSSLRRAAQLKKKFPHLEFRDIRGNLNTRLKKLDEKEDFSAIVLAAAGLKRMGWEDRIGQLLGPEDCLYAVGQGALAVEVRAKDQEILNMVSALHDADTVLCCIAERAFMKRLEGGCSVPVAVNTLLKDGQLYLTGAVYSLDGSDSLKETMQTSVTYPHQNEDGPNDDVQHVGITAKNVPGQAQEAAENLGVELASLLLSKGAKHILSVARQLNDAR
SIO_010081: HMBS
subclass of: SO_0000673
so part of: HMBS
location: complement(join(34311..34484,34693..34779,35339..35392,35627..35746,36636..36674,37179..37292,38004..38079,40248..40325,40649..40726,41831..41886,41985..42034,42706..42778,44325..44470))
location: region:34311-44470:-1
so has part: feature:44325-44470:-1:exon
so has part: feature:42706-42778:-1:exon
so has part: feature:41985-42034:-1:exon
so has part: feature:41831-41886:-1:exon
so has part: feature:40649-40726:-1:exon
so has part: feature:40248-40325:-1:exon
so has part: feature:38004-38079:-1:exon
so has part: feature:37179-37292:-1:exon
so has part: feature:36636-36674:-1:exon
so has part: feature:35627-35746:-1:exon
so has part: feature:35339-35392:-1:exon
so has part: feature:34693-34779:-1:exon
so has part: feature:34311-34484:-1:exon

XP_039420862.1
type: Protein
SIO_000068: ncbiprotein

position:34311:-1
position: 34311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44325-44470:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:42706-42778:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:41985-42034:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:41831-41886:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:40649-40726:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:40248-40325:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:38004-38079:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:37179-37292:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:36636-36674:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:35627-35746:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:35339-35392:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:34693-34779:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:34311-34484:-1:exon

VPS11
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: VPS11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(44952..55121)
location: region:44952-55121:-1
so has part: feature:44952-55121:-1:exon
subclass of: SO_0000010

104692160
type: Gene
SIO_000068: ncbigene

position:44952:-1
position: 44952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55121:-1
position: 55121
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:44952-55121:-1:exon

VPS11
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: VPS11
product: VPS11 core subunit of CORVET and HOPS complexes
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564922.1
SIO_010081: VPS11
subclass of: SO_0000673
so part of: VPS11
location: complement(join(44952..45229,45953..46175,46289..46460,47046..47248,47559..47698,48172..48333,49195..49383,49876..50019,50423..50609,51559..51710,51986..52187,52587..52834,52936..53099,54154..54289,54477..54625,54932..55121))
location: region:44952-55121:-1
so has part: feature:54932-55121:-1:exon
so has part: feature:54477-54625:-1:exon
so has part: feature:54154-54289:-1:exon
so has part: feature:52936-53099:-1:exon
so has part: feature:52587-52834:-1:exon
so has part: feature:51986-52187:-1:exon
so has part: feature:51559-51710:-1:exon
so has part: feature:50423-50609:-1:exon
so has part: feature:49876-50019:-1:exon
so has part: feature:49195-49383:-1:exon
so has part: feature:48172-48333:-1:exon
so has part: feature:47559-47698:-1:exon
so has part: feature:47046-47248:-1:exon
so has part: feature:46289-46460:-1:exon
so has part: feature:45953-46175:-1:exon
so has part: feature:44952-45229:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:54932-55121:-1:exon

position:54932:-1
position: 54932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:54477-54625:-1:exon

position:54477:-1
position: 54477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54625:-1
position: 54625
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:54154-54289:-1:exon

position:54154:-1
position: 54154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:54289:-1
position: 54289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:52936-53099:-1:exon

position:52936:-1
position: 52936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:53099:-1
position: 53099
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:52587-52834:-1:exon

position:52587:-1
position: 52587
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52834:-1
position: 52834
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:51986-52187:-1:exon

position:51986:-1
position: 51986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:52187:-1
position: 52187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:51559-51710:-1:exon

position:51559:-1
position: 51559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:51710:-1
position: 51710
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:50423-50609:-1:exon

position:50423:-1
position: 50423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50609:-1
position: 50609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:49876-50019:-1:exon

position:49876:-1
position: 49876
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:50019:-1
position: 50019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:49195-49383:-1:exon

position:49195:-1
position: 49195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:49383:-1
position: 49383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:48172-48333:-1:exon

position:48172:-1
position: 48172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:48333:-1
position: 48333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:47559-47698:-1:exon

position:47559:-1
position: 47559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47698:-1
position: 47698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:47046-47248:-1:exon

position:47046:-1
position: 47046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:47248:-1
position: 47248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:46289-46460:-1:exon

position:46289:-1
position: 46289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46460:-1
position: 46460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:45953-46175:-1:exon

position:45953:-1
position: 45953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:46175:-1
position: 46175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:44952-45229:-1:exon

position:45229:-1
position: 45229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

VPS11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: VPS11
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vacuolar protein sorting-associated protein 11 homolog
translation: MAAYLQWRRFVFFDRETVKEPSGPDGAASKPFALPPGIAVCDSGRGSLVFGDMEGQIWFLPRSLQLSSFQAYKLRVTHLYQLKQHSILVSVGEDEEGINPLVKVWNLEKRDGGNPLCTRIFPAIPGNKPTVVSCLTVHENLNFMAIGFADGSVVLTKGDITRDRHSKTQLLHEGSYPVTGLAFRQSGKTTHLFVVTTENIQSYMLSVKDYPHLELDTHGCGLRCSSLSDPSQDLQFIVAGNECVYLYQPDERGPCFAFEGQKLIVHWYRGYLIIVSKERKTSPKSEFAGNEAQNSDKQVLNIYDLCNKFIAYSSIFDDIVDVLAEWGSLYVLTRDGKIHVLQEKDTQTKLEMLFRKNLFEMAINLAKSHHLDSDGLSEIFRQYGDHLYNKGNHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQMLHLQSLANADHTTLLLNCYTKLKDSSKLEEFIKTSESEVHFDVETAIKVLRQAGYYSHAVYLAEKHEHHEWYLKIQLEDIKNYQEALHYIGKLPFEQAESNMKRYGKILMHHVPNETTELLKVLCTDYRPSGGNEGPGMLEGKKANSEEFIPVFANNSRELKAFLEHMTEVQADSPQGVYDTLLELRLQNWAHEQDEQIKEKLHNEALTLLKSGRFKTVFDKALVLCQMHSFKDGVLYLYEQGKLFQQIMHYHMQNEQYKKVIEVCELYGDQEACLWEQALGYFARKEENCKEFIAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIKDYLVNKLQKQSRQIEQDEQRIQKYREETMRIRLEIEELKASPKIFQKTKCSICTSALELPSVHFLCGHSFHQHCFESYSESDSECPTCMPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDGFSVVADYFGRGVFNKLTLITDLPSGKTATTIEAGLQRELLIHTKRST
SIO_010081: VPS11
subclass of: SO_0000673
so part of: VPS11
location: complement(join(45065..45229,45953..46175,46289..46460,47046..47248,47559..47698,48172..48333,49195..49383,49876..50019,50423..50609,51559..51710,51986..52187,52587..52834,52936..53099,54154..54289,54477..54625,54932..55085))
location: region:45065-55085:-1
so has part: feature:54932-55085:-1:exon
so has part: feature:54477-54625:-1:exon
so has part: feature:54154-54289:-1:exon
so has part: feature:52936-53099:-1:exon
so has part: feature:52587-52834:-1:exon
so has part: feature:51986-52187:-1:exon
so has part: feature:51559-51710:-1:exon
so has part: feature:50423-50609:-1:exon
so has part: feature:49876-50019:-1:exon
so has part: feature:49195-49383:-1:exon
so has part: feature:48172-48333:-1:exon
so has part: feature:47559-47698:-1:exon
so has part: feature:47046-47248:-1:exon
so has part: feature:46289-46460:-1:exon
so has part: feature:45953-46175:-1:exon
so has part: feature:45065-45229:-1:exon

XP_039420856.1
type: Protein
SIO_000068: ncbiprotein

position:45065:-1
position: 45065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:55085:-1
position: 55085
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:54932-55085:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:54477-54625:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:54154-54289:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:52936-53099:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:52587-52834:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:51986-52187:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:51559-51710:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:50423-50609:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:49876-50019:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:49195-49383:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:48172-48333:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:47559-47698:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:47046-47248:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:46289-46460:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:45953-46175:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:45065-45229:-1:exon

LOC120411243
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411243
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 45223..50292
location: region:45223-50292:1
so has part: feature:45223-50292:1:exon
subclass of: SO_0000011

120411243
type: Gene
SIO_000068: ncbigene

position:45223:1
position: 45223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:50292:1
position: 50292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:45223-50292:1:exon

LOC120411243
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411243
product: uncharacterized LOC120411243
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
transcript id: XR_005603633.1
SIO_010081: LOC120411243
subclass of: SO_0000673
so part of: LOC120411243
location: join(45223..45499,45925..50292)
location: region:45223-50292:1
so has part: feature:45223-45499:1:exon
so has part: feature:45925-50292:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:45223-45499:1:exon

position:45499:1
position: 45499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:45925-50292:1:exon

position:45925:1
position: 45925
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DDX6
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: DDX6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(56512..74378)
location: region:56512-74378:-1
so has part: feature:56512-74378:-1:exon
subclass of: SO_0000010

104692040
type: Gene
SIO_000068: ncbigene

position:56512:-1
position: 56512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:74378:-1
position: 74378
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56512-74378:-1:exon

DDX6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: DDX6
product: DEAD-box helicase 6, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564780.1
SIO_010081: DDX6
subclass of: SO_0000673
so part of: DDX6
location: complement(join(56512..60816,62244..62427,63163..63264,64147..64210,65738..65854,66184..66312,66778..66900,67432..67526,67780..67926,68417..68546,69776..69880,70344..70407,71828..72291,74265..74378))
location: region:56512-74378:-1
so has part: feature:74265-74378:-1:exon
so has part: feature:71828-72291:-1:exon
so has part: feature:70344-70407:-1:exon
so has part: feature:69776-69880:-1:exon
so has part: feature:68417-68546:-1:exon
so has part: feature:67780-67926:-1:exon
so has part: feature:67432-67526:-1:exon
so has part: feature:66778-66900:-1:exon
so has part: feature:66184-66312:-1:exon
so has part: feature:65738-65854:-1:exon
so has part: feature:64147-64210:-1:exon
so has part: feature:63163-63264:-1:exon
so has part: feature:62244-62427:-1:exon
so has part: feature:56512-60816:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:74265-74378:-1:exon

position:74265:-1
position: 74265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:71828-72291:-1:exon

position:71828:-1
position: 71828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72291:-1
position: 72291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:70344-70407:-1:exon

position:70344:-1
position: 70344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70407:-1
position: 70407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:69776-69880:-1:exon

position:69776:-1
position: 69776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:69880:-1
position: 69880
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:68417-68546:-1:exon

position:68417:-1
position: 68417
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68546:-1
position: 68546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:67780-67926:-1:exon

position:67780:-1
position: 67780
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67926:-1
position: 67926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:67432-67526:-1:exon

position:67432:-1
position: 67432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:67526:-1
position: 67526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:66778-66900:-1:exon

position:66778:-1
position: 66778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66900:-1
position: 66900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:66184-66312:-1:exon

position:66184:-1
position: 66184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:66312:-1
position: 66312
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:65738-65854:-1:exon

position:65738:-1
position: 65738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:65854:-1
position: 65854
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:64147-64210:-1:exon

position:64147:-1
position: 64147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64210:-1
position: 64210
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:63163-63264:-1:exon

position:63163:-1
position: 63163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63264:-1
position: 63264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:62244-62427:-1:exon

position:62244:-1
position: 62244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62427:-1
position: 62427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:56512-60816:-1:exon

position:60816:-1
position: 60816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

DDX6
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: DDX6
product: DEAD-box helicase 6, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 13 ESTs, 17 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564781.1
SIO_010081: DDX6
subclass of: SO_0000673
so part of: DDX6
location: complement(join(56512..60816,62248..62427,63163..63264,64147..64210,65738..65854,66184..66312,66778..66900,67432..67526,67780..67926,68417..68546,69776..69880,70344..70407,71828..72291,74265..74365))
location: region:56512-74365:-1
so has part: feature:74265-74365:-1:exon
so has part: feature:71828-72291:-1:exon
so has part: feature:70344-70407:-1:exon
so has part: feature:69776-69880:-1:exon
so has part: feature:68417-68546:-1:exon
so has part: feature:67780-67926:-1:exon
so has part: feature:67432-67526:-1:exon
so has part: feature:66778-66900:-1:exon
so has part: feature:66184-66312:-1:exon
so has part: feature:65738-65854:-1:exon
so has part: feature:64147-64210:-1:exon
so has part: feature:63163-63264:-1:exon
so has part: feature:62248-62427:-1:exon
so has part: feature:56512-60816:-1:exon

position:74365:-1
position: 74365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74265-74365:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:71828-72291:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:70344-70407:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:69776-69880:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:68417-68546:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67780-67926:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:67432-67526:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:66778-66900:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:66184-66312:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:65738-65854:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:64147-64210:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:63163-63264:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:62248-62427:-1:exon

position:62248:-1
position: 62248
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:56512-60816:-1:exon

DDX6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: DDX6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable ATP-dependent RNA helicase DDX6
translation: MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQSMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKQ
SIO_010081: DDX6
subclass of: SO_0000673
so part of: DDX6
location: complement(join(62252..62427,63163..63264,64147..64210,65738..65854,66184..66312,66778..66900,67432..67526,67780..67926,68417..68546,69776..69880,70344..70407,71828..72027))
location: region:62252-72027:-1
so has part: feature:71828-72027:-1:exon
so has part: feature:70344-70407:-1:exon
so has part: feature:69776-69880:-1:exon
so has part: feature:68417-68546:-1:exon
so has part: feature:67780-67926:-1:exon
so has part: feature:67432-67526:-1:exon
so has part: feature:66778-66900:-1:exon
so has part: feature:66184-66312:-1:exon
so has part: feature:65738-65854:-1:exon
so has part: feature:64147-64210:-1:exon
so has part: feature:63163-63264:-1:exon
so has part: feature:62252-62427:-1:exon

XP_039420714.1
type: Protein
SIO_000068: ncbiprotein

position:62252:-1
position: 62252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:72027:-1
position: 72027
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71828-72027:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:70344-70407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69776-69880:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:68417-68546:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:67780-67926:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67432-67526:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:66778-66900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:66184-66312:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:65738-65854:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:64147-64210:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:63163-63264:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62252-62427:-1:exon

DDX6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: DDX6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: probable ATP-dependent RNA helicase DDX6
translation: MSTARTENPVIMGLSSQNGQLRGPVKPSGGPGGGGTQTQQQMNQLKNANTINNGTQQQAQSMTTAIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKQ
SIO_010081: DDX6
subclass of: SO_0000673
so part of: DDX6
location: complement(join(62252..62427,63163..63264,64147..64210,65738..65854,66184..66312,66778..66900,67432..67526,67780..67926,68417..68546,69776..69880,70344..70407,71828..72027))
location: region:62252-72027:-1
so has part: feature:71828-72027:-1:exon
so has part: feature:70344-70407:-1:exon
so has part: feature:69776-69880:-1:exon
so has part: feature:68417-68546:-1:exon
so has part: feature:67780-67926:-1:exon
so has part: feature:67432-67526:-1:exon
so has part: feature:66778-66900:-1:exon
so has part: feature:66184-66312:-1:exon
so has part: feature:65738-65854:-1:exon
so has part: feature:64147-64210:-1:exon
so has part: feature:63163-63264:-1:exon
so has part: feature:62252-62427:-1:exon

XP_039420715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:71828-72027:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:70344-70407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:69776-69880:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:68417-68546:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:67780-67926:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:67432-67526:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:66778-66900:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:66184-66312:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:65738-65854:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:64147-64210:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:63163-63264:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:62252-62427:-1:exon

CXCR5
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CXCR5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 74532..84548
location: region:74532-84548:1
so has part: feature:74532-84548:1:exon
subclass of: SO_0000010

104692041
type: Gene
SIO_000068: ncbigene

position:74532:1
position: 74532
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:84548:1
position: 84548
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74532-84548:1:exon

CXCR5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CXCR5
product: C-X-C motif chemokine receptor 5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transcript id: XM_010403764.4
SIO_010081: CXCR5
subclass of: SO_0000673
so part of: CXCR5
location: join(74532..76307,81372..84548)
location: region:74532-84548:1
so has part: feature:74532-76307:1:exon
so has part: feature:81372-84548:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:74532-76307:1:exon

position:76307:1
position: 76307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:81372-84548:1:exon

position:81372:1
position: 81372
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CXCR5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CXCR5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: C-X-C chemokine receptor type 5
translation: MGPVSYSSETYDLSQVELSGYYEAENTTPSLEGYFCFNPASSVVGNQGDPFRKVFMPLIYLLMFVLGTVGNALVLVILERFKRSRTTTENFLFHLTLANLALLLTFPFSVVESLAGWVFGKFLCKILSAVHKINFYCSSMLLGCIAVDRYLAIVYAIHTYRKRRARSIHLTCTAVWLCSLLLTLPDLIFMEVWTDDSNRSICYFPEVGIDGNNAWLATRFLYHTVGFFVPLLVMCYCYMAIIRALCQSQRLQRQKAVRVAILVTGIFLLCWSPYHIVIFLNTLTKLEAFTKNCLLEDQLDTAIMVTEAIGFTHCCLNPILYAFIGVKFRNDFFRILQELGCISQETLQEILEVTRKASGIESDNTTSISTF
SIO_010081: CXCR5
subclass of: SO_0000673
so part of: CXCR5
location: join(76269..76307,81372..82448)
location: region:76269-82448:1
so has part: feature:76269-76307:1:exon
so has part: feature:81372-82448:1:exon

XP_010402066.1
type: Protein
SIO_000068: ncbiprotein

position:76269:1
position: 76269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:82448:1
position: 82448
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:76269-76307:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:81372-82448:1:exon

BCL9L
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: BCL9L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(85699..131723)
location: region:85699-131723:-1
so has part: feature:85699-131723:-1:exon
subclass of: SO_0000010

104692042
type: Gene
SIO_000068: ncbigene

position:85699:-1
position: 85699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:131723:-1
position: 131723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:85699-131723:-1:exon

BCL9L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: BCL9L
product: BCL9 like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_010403765.3
SIO_010081: BCL9L
subclass of: SO_0000673
so part of: BCL9L
location: complement(join(85699..90349,91593..91844,92272..94669,95093..95177,95953..96163,97360..97482,99173..99536))
location: region:85699-99536:-1
so has part: feature:99173-99536:-1:exon
so has part: feature:97360-97482:-1:exon
so has part: feature:95953-96163:-1:exon
so has part: feature:95093-95177:-1:exon
so has part: feature:92272-94669:-1:exon
so has part: feature:91593-91844:-1:exon
so has part: feature:85699-90349:-1:exon

position:99536:-1
position: 99536
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99173-99536:-1:exon

position:99173:-1
position: 99173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:97360-97482:-1:exon

position:97360:-1
position: 97360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:97482:-1
position: 97482
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:95953-96163:-1:exon

position:95953:-1
position: 95953
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:96163:-1
position: 96163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:95093-95177:-1:exon

position:95093:-1
position: 95093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:95177:-1
position: 95177
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:92272-94669:-1:exon

position:92272:-1
position: 92272
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94669:-1
position: 94669
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:91593-91844:-1:exon

position:91593:-1
position: 91593
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:91844:-1
position: 91844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:85699-90349:-1:exon

position:90349:-1
position: 90349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BCL9L
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: BCL9L
product: BCL9 like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
transcript id: XM_039564739.1
SIO_010081: BCL9L
subclass of: SO_0000673
so part of: BCL9L
location: complement(join(89190..90349,91584..91844,92272..94669,95093..95177,95953..96163,97360..97482,99173..99536,131658..131723))
location: region:89190-131723:-1
so has part: feature:131658-131723:-1:exon
so has part: feature:99173-99536:-1:exon
so has part: feature:97360-97482:-1:exon
so has part: feature:95953-96163:-1:exon
so has part: feature:95093-95177:-1:exon
so has part: feature:92272-94669:-1:exon
so has part: feature:91584-91844:-1:exon
so has part: feature:89190-90349:-1:exon

position:89190:-1
position: 89190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:131658-131723:-1:exon

position:131658:-1
position: 131658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:99173-99536:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:97360-97482:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:95953-96163:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:95093-95177:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:92272-94669:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:91584-91844:-1:exon

position:91584:-1
position: 91584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:89190-90349:-1:exon

BCL9L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: BCL9L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: B-cell CLL/lymphoma 9-like protein isoform X1
translation: MHPDNKLPSHGKAGSSSALAQHHNVSQAPTCNLGSKGVGAGSHGSKATQISPGNSGLKTSQNTVPNFSSLKGKVKRERSISVDSGEQREASTPSQDTESKGEVAPRSKRRCVLERKQPYSGDEWCSGPDSEEDDKPISSAHSCNVADPAMSTAPQLGPGSNPLPNLSESSASGVPHGAAPGLRSEAAGGGGGGTGKQPSQFVYVFTTHLANTAAEAVLQGRADSILAYHQQNVPRAKLDQAPPAPKVLGVAEPLPINPPTANTPQSQPLAPQASQQQPQPPPPQPPAPPPQAISQTPLPVPSSLPQEGTGEDGRRELTPNSLGNNSSNNQPGSNHPNTPTASASAMQPGQGDSSTTPSSSLLGEGPGPGMPGNGQAGLGPRNTMNSEGLSKEQLEHRERSLQTLRDIERLLLRSGEAEPFLKSSQNAGEGGTTPQPQAAPAQPPAPPASMKKYEEPLQSMISQTQSLGGPGLEHEVPHHPSTDMGQQMNMMMQRLNQDSLTPEQVAWRKLQEEYYEEKRRKEEQISIHGRPMQEIMIPQSMGSMMMRGPPPPYHSKPGEQWPPGMGSQLRGPIDVQDPMQLRGGPPFPGPRFPGNQMQRVSGFGGMQNMPLDALGPMNAMQRPVRPGMGWSDDMSPMGGPGNFPQGTLPYPPGQGDPERFMNPRAREEILRHQLMEKRPVAMQRPMGISSNSMSQGMEMERMMQAHRQMDPSMFAGQITGESLSSAPIGMDFAGTRGMLSPPMSQSGLRDMDTPMGPGNLNMNMNVNMNMNMNLNVQMTPQQQMMMSQKMRGPEMMAHQGMNPEELARVRAQNGNGSAMLTGPQKMMIPSQFPNQGQQGFSTGQGSYPNLPQEMGSGSDMFSPEQGTMAVGSISGTTRLSHIPLPPASNPTPTAGGNLANMHPAPSRGLGRRPSDLTININQMNSPSMGHLKSPTLSQVHSPLVTSPSANLKSPQTPSQMVSMPPSNQSGPLKSPQVMSSSLNVRSPTGSPSRLKSPSMAVSSPGWVPSPKATMPSPGVNQSKQTLNMNSSASIGALDQGSLPSGPRSSSSAPASNTSSTMNPNMPFTSSPDPSPSQNPLSLMMSQMSKYAMPSSTPLYHNAIKTIATSDDELLPDRPMLPPGSVTGNQPNQLHLNSVGPGSSQSPMGMNLPGQQPLSHEPPPTSMMSSPNPLGSNIPMHPSGPGAGVPPQNPMMLPPGPQDSLNQQCGPVHNSSQMIPSNQLVFPRMQQPHNAMPSPAGGMPMAPSAGGGPGMQQHYPPGMPLPPEDLPSQQPGQMPPQQHMMGKNIPPRIGDPYPPVLPGVASVLNDPELSEVIRPTPTGIPEFDLSRIIPSEKPSSTLQYFPKSDSQAPKSQPSNLHLMNLQNMMAEQPPVRPGMNAPSLPGQQGVQRGLSMPMCHPGQVPMLGRTGIPPQQGMMGNSMHQGMMSPQQSLMAQQNFMLMQAKQRSMSVSGEMYAQTGHMMSPQGSLMGPPPQQNLMVTHQMRQRSVSLDSQMSYIPGPGNMANLPF
SIO_010081: BCL9L
subclass of: SO_0000673
so part of: BCL9L
location: complement(join(89190..90349,91593..91844,92272..94669,95093..95177,95953..96163,97360..97482,99173..99473))
location: region:89190-99473:-1
so has part: feature:99173-99473:-1:exon
so has part: feature:97360-97482:-1:exon
so has part: feature:95953-96163:-1:exon
so has part: feature:95093-95177:-1:exon
so has part: feature:92272-94669:-1:exon
so has part: feature:91593-91844:-1:exon
so has part: feature:89190-90349:-1:exon

XP_010402067.1
type: Protein
SIO_000068: ncbiprotein

position:99473:-1
position: 99473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:99173-99473:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97360-97482:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:95953-96163:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:95093-95177:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:92272-94669:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:91593-91844:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:89190-90349:-1:exon

BCL9L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: BCL9L
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: B-cell CLL/lymphoma 9-like protein isoform X2
translation: MHPDNKLPSHGKAGSSSALAQHHNVSQAPTCNLGSKGVGAGSHGSKATQISPGNSGLKTSQNTVPNFSSLKGKVKRERSISVDSGEQREASTPSQDTESKGEVAPRSKRRCVLERKQPYSGDEWCSGPDSEEDDKPISSAHSCNVADPAMSTAPQLGPGSNPLPNLSESSASGVPHGAAPGLRSEAAGGGGGGTGKQPSQFVYVFTTHLANTAAEAVLQGRADSILAYHQQNVPRAKLDQAPPAPKVLGVAEPLPINPPTANTPQSQPLAPQASQQQPQPPPPQPPAPPPQAISQTPLPVPSSLPQEGTGEDGRRELTPNSLGNNSSNNQPGSNHPNTPTASASAMQPGQGDSSTTPSSSLLGEGPGPGMPGNGQAGLGPRNTMNSEGLSKEQLEHRERSLQTLRDIERLLLRSGEAEPFLKSSQNAGEGGTTPQPQAAPAQPPAPPASMKKYEEPLQSMISQTQSLGGPGLEHEVPHHPSTDMGQQMNMMMQRLNQDSLTPEQVAWRKLQEEYYEEKRRKEEQISIHGRPMQEIMIPQSMGSMMMRGPPPPYHSKPGEQWPPGMGSQLRGPIDVQDPMQLRGGPPFPGPRFPGNQMQRVSGFGGMQNMPLDALGPMNAMQRPVRPGMGWSDDMSPMGGPGNFPQGTLPYPPGQGDPERFMNPRAREEILRHQLMEKRPVAMQRPMGISSNSMSQGMEMERMMQAHRQMDPSMFAGQITGESLSSAPIGMDFAGTRGMLSPPMSQSGLRDMDTPMGPGNLNMNMNVNMNMNMNLNVQMTPQQQMMMSQKMRGPEMMAHQGMNPEELARVRAQNGNGSAMLTGPQKMMIPSQFPNQGQQGFSTGQGSYPNLPQEMGSGSDMFSPEQGTMAVGSISGTTRLSHIPLPPASNPTPTAGGNLANMHPAPSRGLGRRPSDLTININQMNSPSMGHLKSPTLSQVHSPLVTSPSANLKSPQTPSQMVSMPPSNQSGPLKSPQVMSSSLNVRSPTGSPSRLKSPSMAVSSPGWVPSPKATMPSPGVNQSKQTLNMNSSASIGALDQGSLPSGPRSSSSAPASNTSSTMNPNMPFTSSPDPSPSQNPLSLMMSQMSKYAMPSSTPLYHNAIKTIATSDDELLPDRPMLPPGSMSGVTGNQPNQLHLNSVGPGSSQSPMGMNLPGQQPLSHEPPPTSMMSSPNPLGSNIPMHPSGPGAGVPPQNPMMLPPGPQDSLNQQCGPVHNSSQMIPSNQLVFPRMQQPHNAMPSPAGGMPMAPSAGGGPGMQQHYPPGMPLPPEDLPSQQPGQMPPQQHMMGKNIPPRIGDPYPPVLPGVASVLNDPELSEVIRPTPTGIPEFDLSRIIPSEKPSSTLQYFPKSDSQAPKSQPSNLHLMNLQNMMAEQPPVRPGMNAPSLPGQQGVQRGLSMPMCHPGQVPMLGRTGIPPQQGMMGNSMHQGMMSPQQSLMAQQNFMLMQAKQRSMSVSGEMYAQTGHMMSPQGSLMGPPPQQNLMVTHQMRQRSVSLDSQMSYIPGPGNMANLPF
SIO_010081: BCL9L
subclass of: SO_0000673
so part of: BCL9L
location: complement(join(89190..90349,91584..91844,92272..94669,95093..95177,95953..96163,97360..97482,99173..99473))
location: region:89190-99473:-1
so has part: feature:99173-99473:-1:exon
so has part: feature:97360-97482:-1:exon
so has part: feature:95953-96163:-1:exon
so has part: feature:95093-95177:-1:exon
so has part: feature:92272-94669:-1:exon
so has part: feature:91584-91844:-1:exon
so has part: feature:89190-90349:-1:exon

XP_039420673.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:99173-99473:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:97360-97482:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:95953-96163:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:95093-95177:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:92272-94669:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:91584-91844:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:89190-90349:-1:exon

CENATAC
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CENATAC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 151062..154269
location: region:151062-154269:1
so has part: feature:151062-154269:1:exon
subclass of: SO_0000010

104692044
type: Gene
SIO_000068: ncbigene

position:151062:1
position: 151062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:154269:1
position: 154269
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151062-154269:1:exon

CENATAC
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CENATAC
product: centrosomal AT-AC splicing factor, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_039564858.1
SIO_010081: CENATAC
subclass of: SO_0000673
so part of: CENATAC
location: join(151062..151379,151484..151649,151724..151786,151951..152015,152165..152270,152626..152656,153044..153127,153349..153492,153936..154269)
location: region:151062-154269:1
so has part: feature:151062-151379:1:exon
so has part: feature:151484-151649:1:exon
so has part: feature:151724-151786:1:exon
so has part: feature:151951-152015:1:exon
so has part: feature:152165-152270:1:exon
so has part: feature:152626-152656:1:exon
so has part: feature:153044-153127:1:exon
so has part: feature:153349-153492:1:exon
so has part: feature:153936-154269:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151062-151379:1:exon

position:151379:1
position: 151379
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:151484-151649:1:exon

position:151484:1
position: 151484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151649:1
position: 151649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:151724-151786:1:exon

position:151724:1
position: 151724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:151786:1
position: 151786
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:151951-152015:1:exon

position:151951:1
position: 151951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152015:1
position: 152015
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:152165-152270:1:exon

position:152165:1
position: 152165
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152270:1
position: 152270
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:152626-152656:1:exon

position:152626:1
position: 152626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:152656:1
position: 152656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:153044-153127:1:exon

position:153044:1
position: 153044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153127:1
position: 153127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:153349-153492:1:exon

position:153349:1
position: 153349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153492:1
position: 153492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:153936-154269:1:exon

position:153936:1
position: 153936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CENATAC
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CENATAC
product: centrosomal AT-AC splicing factor, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_039564856.1
SIO_010081: CENATAC
subclass of: SO_0000673
so part of: CENATAC
location: join(151062..151379,151484..151649,151724..151786,151951..152015,152165..152270,152626..152656,153044..153127,153349..153481,153936..154269)
location: region:151062-154269:1
so has part: feature:151062-151379:1:exon
so has part: feature:151484-151649:1:exon
so has part: feature:151724-151786:1:exon
so has part: feature:151951-152015:1:exon
so has part: feature:152165-152270:1:exon
so has part: feature:152626-152656:1:exon
so has part: feature:153044-153127:1:exon
so has part: feature:153349-153481:1:exon
so has part: feature:153936-154269:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:151062-151379:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:151484-151649:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:151724-151786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:151951-152015:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:152165-152270:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:152626-152656:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:153044-153127:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:153349-153481:1:exon

position:153481:1
position: 153481
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:153936-154269:1:exon

CENATAC
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CENATAC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal AT-AC splicing factor isoform X1
translation: MAVHYCGLCRRSAFTGRRHLYSAGHRRRLRETLARLQEATAAARAAVADVAAAVQRYDPAEHDGRVWCPCCGRGVRRDRRCGGRALLQAGLLRHLAGPEHRRQTARFWRENRAEAALRERCLVPAEEYERFAQALEQALSEHQRREEERILQMAADIRETERRQRETVQAALQLQREPELCAGPSVCRPPAGPERDSPCAAEQPGPSRMQTGPDLAWMESSQVLTFIGHQETEGKGNVHTGAKPPWLSEEEDGSKQQIGPSYEEFLKHKEKQKLKKLPVERVGANFDHTSQTSDSWLPSFGRVWNHGRRWQSRHQFRTESGEKKKKR
SIO_010081: CENATAC
subclass of: SO_0000673
so part of: CENATAC
location: join(151090..151379,151484..151649,151724..151786,151951..152015,152165..152270,152626..152656,153044..153127,153349..153481,153936..153981)
location: region:151090-153981:1
so has part: feature:151090-151379:1:exon
so has part: feature:151484-151649:1:exon
so has part: feature:151724-151786:1:exon
so has part: feature:151951-152015:1:exon
so has part: feature:152165-152270:1:exon
so has part: feature:152626-152656:1:exon
so has part: feature:153044-153127:1:exon
so has part: feature:153349-153481:1:exon
so has part: feature:153936-153981:1:exon

XP_039420790.1
type: Protein
SIO_000068: ncbiprotein

position:151090:1
position: 151090
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:153981:1
position: 153981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151090-151379:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:151484-151649:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:151724-151786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:151951-152015:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:152165-152270:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:152626-152656:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:153044-153127:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:153349-153481:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:153936-153981:1:exon

CENATAC
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CENATAC
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: centrosomal AT-AC splicing factor isoform X2
translation: MAVHYCGLCRRSAFTGRRHLYSAGHRRRLRETLARLQEATAAARAAVADVAAAVQRYDPAEHDGRVWCPCCGRGVRRDRRCGGRALLQAGLLRHLAGPEHRRQTARFWRENRAEAALRERCLVPAEEYERFAQALEQALSEHQRREEERILQMAADIRETERRQRETVQAALQLQREPELCAGPSVCRPPAGPERDSPCAAEQPGPSRMQTGPDLAWMESSQVLTFIGHQETEGKGNVHTGAKPPWLSEEEDGSKQQIGPSYEEFLKHKEKQKLKKLPVERVGANFDHTSQTSDSWLPSFGRVWNHGRRWQSR
SIO_010081: CENATAC
subclass of: SO_0000673
so part of: CENATAC
location: join(151090..151379,151484..151649,151724..151786,151951..152015,152165..152270,152626..152656,153044..153127,153349..153485)
location: region:151090-153485:1
so has part: feature:151090-151379:1:exon
so has part: feature:151484-151649:1:exon
so has part: feature:151724-151786:1:exon
so has part: feature:151951-152015:1:exon
so has part: feature:152165-152270:1:exon
so has part: feature:152626-152656:1:exon
so has part: feature:153044-153127:1:exon
so has part: feature:153349-153485:1:exon

XP_039420792.1
type: Protein
SIO_000068: ncbiprotein

position:153485:1
position: 153485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:151090-151379:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:151484-151649:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:151724-151786:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:151951-152015:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:152165-152270:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:152626-152656:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:153044-153127:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:153349-153485:1:exon

RPS25
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RPS25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(154567..156456)
location: region:154567-156456:-1
so has part: feature:154567-156456:-1:exon
subclass of: SO_0000010

104692043
type: Gene
SIO_000068: ncbigene

position:154567:-1
position: 154567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156456:-1
position: 156456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:154567-156456:-1:exon

RPS25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RPS25
product: ribosomal protein S25
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 28 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564860.1
SIO_010081: RPS25
subclass of: SO_0000673
so part of: RPS25
location: complement(join(154567..154649,155045..155143,155525..155708,156094..156189,156348..156456))
location: region:154567-156456:-1
so has part: feature:156348-156456:-1:exon
so has part: feature:156094-156189:-1:exon
so has part: feature:155525-155708:-1:exon
so has part: feature:155045-155143:-1:exon
so has part: feature:154567-154649:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:156348-156456:-1:exon

position:156348:-1
position: 156348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:156094-156189:-1:exon

position:156094:-1
position: 156094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156189:-1
position: 156189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:155525-155708:-1:exon

position:155525:-1
position: 155525
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155708:-1
position: 155708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:155045-155143:-1:exon

position:155045:-1
position: 155045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:155143:-1
position: 155143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:154567-154649:-1:exon

position:154649:-1
position: 154649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RPS25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RPS25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 40S ribosomal protein S25
translation: MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPAAGEDA
SIO_010081: RPS25
subclass of: SO_0000673
so part of: RPS25
location: complement(join(155049..155143,155525..155708,156094..156189,156348..156350))
location: region:155049-156350:-1
so has part: feature:156348-156350:-1:exon
so has part: feature:156094-156189:-1:exon
so has part: feature:155525-155708:-1:exon
so has part: feature:155049-155143:-1:exon

XP_039420794.1
type: Protein
SIO_000068: ncbiprotein

position:155049:-1
position: 155049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:156350:-1
position: 156350
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156348-156350:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:156094-156189:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:155525-155708:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:155049-155143:-1:exon

TRAPPC4
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TRAPPC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 156453..158231
location: region:156453-158231:1
so has part: feature:156453-158231:1:exon
subclass of: SO_0000010

104692161
type: Gene
SIO_000068: ncbigene

position:156453:1
position: 156453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:158231:1
position: 158231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156453-158231:1:exon

TRAPPC4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TRAPPC4
product: trafficking protein particle complex subunit 4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 4 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
transcript id: XM_039564859.1
SIO_010081: TRAPPC4
subclass of: SO_0000673
so part of: TRAPPC4
location: join(156453..156680,156761..156935,157010..157113,157208..157334,157752..158231)
location: region:156453-158231:1
so has part: feature:156453-156680:1:exon
so has part: feature:156761-156935:1:exon
so has part: feature:157010-157113:1:exon
so has part: feature:157208-157334:1:exon
so has part: feature:157752-158231:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:156453-156680:1:exon

position:156680:1
position: 156680
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:156761-156935:1:exon

position:156761:1
position: 156761
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:156935:1
position: 156935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:157010-157113:1:exon

position:157010:1
position: 157010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157113:1
position: 157113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:157208-157334:1:exon

position:157208:1
position: 157208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157334:1
position: 157334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:157752-158231:1:exon

position:157752:1
position: 157752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRAPPC4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TRAPPC4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: trafficking protein particle complex subunit 4
translation: MAIFSVYVVNKAGGLIYQLDHYAPRADTEKTFSFPLDLVLRPHDERVVVAFGQRDGIRVGHAVLAINGAEVNGRFTADGKDVLEFLGNPANYPVSIRFGRHRLSSNEKLMLASMFHSLFAIGSQLSPEVGSSGIEMLETDTFKLHCFQTLTGIKFMVLADPRQTGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGPFGPGS
SIO_010081: TRAPPC4
subclass of: SO_0000673
so part of: TRAPPC4
location: join(156506..156680,156761..156935,157010..157113,157208..157334,157752..157830)
location: region:156506-157830:1
so has part: feature:156506-156680:1:exon
so has part: feature:156761-156935:1:exon
so has part: feature:157010-157113:1:exon
so has part: feature:157208-157334:1:exon
so has part: feature:157752-157830:1:exon

XP_039420793.1
type: Protein
SIO_000068: ncbiprotein

position:156506:1
position: 156506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:157830:1
position: 157830
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:156506-156680:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:156761-156935:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:157010-157113:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:157208-157334:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:157752-157830:1:exon

SLC37A4
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: SLC37A4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(158340..166372)
location: region:158340-166372:-1
so has part: feature:158340-166372:-1:exon
subclass of: SO_0000010

104692045
type: Gene
SIO_000068: ncbigene

position:158340:-1
position: 158340
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166372:-1
position: 166372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:158340-166372:-1:exon

SLC37A4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SLC37A4
product: solute carrier family 37 member 4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 ESTs, 16 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_010403769.1
SIO_010081: SLC37A4
subclass of: SO_0000673
so part of: SLC37A4
location: complement(join(158340..159814,160102..160240,161678..161791,162385..162470,162842..163000,164264..164507,165849..166081,166189..166372))
location: region:158340-166372:-1
so has part: feature:166189-166372:-1:exon
so has part: feature:165849-166081:-1:exon
so has part: feature:164264-164507:-1:exon
so has part: feature:162842-163000:-1:exon
so has part: feature:162385-162470:-1:exon
so has part: feature:161678-161791:-1:exon
so has part: feature:160102-160240:-1:exon
so has part: feature:158340-159814:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166189-166372:-1:exon

position:166189:-1
position: 166189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:165849-166081:-1:exon

position:165849:-1
position: 165849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166081:-1
position: 166081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:164264-164507:-1:exon

position:164264:-1
position: 164264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:164507:-1
position: 164507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:162842-163000:-1:exon

position:162842:-1
position: 162842
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:163000:-1
position: 163000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:162385-162470:-1:exon

position:162385:-1
position: 162385
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:162470:-1
position: 162470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:161678-161791:-1:exon

position:161678:-1
position: 161678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161791:-1
position: 161791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:160102-160240:-1:exon

position:160102:-1
position: 160102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:160240:-1
position: 160240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:158340-159814:-1:exon

position:159814:-1
position: 159814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SLC37A4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SLC37A4
product: solute carrier family 37 member 4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
transcript id: XM_010403768.1
SIO_010081: SLC37A4
subclass of: SO_0000673
so part of: SLC37A4
location: complement(join(158340..159814,160102..160240,161330..161395,161678..161791,162385..162470,162842..163000,164264..164507,165849..166081,166189..166372))
location: region:158340-166372:-1
so has part: feature:166189-166372:-1:exon
so has part: feature:165849-166081:-1:exon
so has part: feature:164264-164507:-1:exon
so has part: feature:162842-163000:-1:exon
so has part: feature:162385-162470:-1:exon
so has part: feature:161678-161791:-1:exon
so has part: feature:161330-161395:-1:exon
so has part: feature:160102-160240:-1:exon
so has part: feature:158340-159814:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:166189-166372:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:165849-166081:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:164264-164507:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:162842-163000:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162385-162470:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161678-161791:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:161330-161395:-1:exon

position:161330:-1
position: 161330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:161395:-1
position: 161395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:160102-160240:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:158340-159814:-1:exon

SLC37A4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SLC37A4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glucose-6-phosphate exchanger SLC37A4 isoform X2
translation: MAAGGYGRYRAVIFAAMFVGYTLYYFNRKTFSFVMPAVMAEVPLGKDDLGLITSSQSAAYAISKFISGVLSDQMSARWLFSSGLLMVGLVNVVFSWSSTVVAFAGLWFLNGLAQGLGWPPCGKILRKWFEPSQFGTWWAILSTSMNLAGGLGPIVAALVSMNYDWRKTLSFSGFTCVVVSFVCLVLVKNEPSDVGLPNIEQGAKKGKKGSSSDNSTLTELLLSPYLWVLSTGYLVVFGVKTCCTDWGQLFLIQERGQSMLVGSSYMSALEIGGLVGSIAAGYLSDRAVAKVGLSSYGNPRHALLLSMMAGMCVSMFLFRVTVTGDSPKLWILTLGAVFGFSSYGPIALFGVIANESAPANLCGTSHAIVALMANVGGFLAGLPFSTIAKHYSWATAFWVAEVTCIAGTVAFFFLRNIRTKMGRISRKAD
SIO_010081: SLC37A4
subclass of: SO_0000673
so part of: SLC37A4
location: complement(join(159648..159814,160102..160240,161678..161791,162385..162470,162842..163000,164264..164507,165849..166081,166189..166336))
location: region:159648-166336:-1
so has part: feature:166189-166336:-1:exon
so has part: feature:165849-166081:-1:exon
so has part: feature:164264-164507:-1:exon
so has part: feature:162842-163000:-1:exon
so has part: feature:162385-162470:-1:exon
so has part: feature:161678-161791:-1:exon
so has part: feature:160102-160240:-1:exon
so has part: feature:159648-159814:-1:exon

XP_010402071.1
type: Protein
SIO_000068: ncbiprotein

position:159648:-1
position: 159648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:166336:-1
position: 166336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166189-166336:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:165849-166081:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:164264-164507:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:162842-163000:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162385-162470:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161678-161791:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:160102-160240:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:159648-159814:-1:exon

SLC37A4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SLC37A4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: glucose-6-phosphate exchanger SLC37A4 isoform X1
translation: MAAGGYGRYRAVIFAAMFVGYTLYYFNRKTFSFVMPAVMAEVPLGKDDLGLITSSQSAAYAISKFISGVLSDQMSARWLFSSGLLMVGLVNVVFSWSSTVVAFAGLWFLNGLAQGLGWPPCGKILRKWFEPSQFGTWWAILSTSMNLAGGLGPIVAALVSMNYDWRKTLSFSGFTCVVVSFVCLVLVKNEPSDVGLPNIEQGAKKGKKGSSSDNSTLTELLLSPYLWVLSTGYLVVFGVKTCCTDWGQLFLIQERGQSMLVGSSYMSALEIGGLVGSIAAGYLSDRAVAKVGLSSYGNPRHALLLSMMAGMCVSMFLFRVTVTGDSPKENHFWTVALQPLADLTGLKEHELWILTLGAVFGFSSYGPIALFGVIANESAPANLCGTSHAIVALMANVGGFLAGLPFSTIAKHYSWATAFWVAEVTCIAGTVAFFFLRNIRTKMGRISRKAD
SIO_010081: SLC37A4
subclass of: SO_0000673
so part of: SLC37A4
location: complement(join(159648..159814,160102..160240,161330..161395,161678..161791,162385..162470,162842..163000,164264..164507,165849..166081,166189..166336))
location: region:159648-166336:-1
so has part: feature:166189-166336:-1:exon
so has part: feature:165849-166081:-1:exon
so has part: feature:164264-164507:-1:exon
so has part: feature:162842-163000:-1:exon
so has part: feature:162385-162470:-1:exon
so has part: feature:161678-161791:-1:exon
so has part: feature:161330-161395:-1:exon
so has part: feature:160102-160240:-1:exon
so has part: feature:159648-159814:-1:exon

XP_010402070.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:166189-166336:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:165849-166081:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:164264-164507:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:162842-163000:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:162385-162470:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:161678-161791:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:161330-161395:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:160102-160240:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:159648-159814:-1:exon

HYOU1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: HYOU1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(166470..180039)
location: region:166470-180039:-1
so has part: feature:166470-180039:-1:exon
subclass of: SO_0000010

104692162
type: Gene
SIO_000068: ncbigene

position:166470:-1
position: 166470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180039:-1
position: 180039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:166470-180039:-1:exon

HYOU1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: HYOU1
product: hypoxia up-regulated 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564920.1
SIO_010081: HYOU1
subclass of: SO_0000673
so part of: HYOU1
location: complement(join(166470..167470,167984..168067,168866..169118,169532..169616,169928..170061,170404..170526,171043..171130,171302..171498,171655..171843,171993..172075,172387..172447,172550..172688,172939..173126,173438..173570,173672..173754,174661..174795,175203..175386,176156..176271,176844..177025,177914..177990,178086..178240,178484..178562,179533..179629,179814..180039))
location: region:166470-180039:-1
so has part: feature:179814-180039:-1:exon
so has part: feature:179533-179629:-1:exon
so has part: feature:178484-178562:-1:exon
so has part: feature:178086-178240:-1:exon
so has part: feature:177914-177990:-1:exon
so has part: feature:176844-177025:-1:exon
so has part: feature:176156-176271:-1:exon
so has part: feature:175203-175386:-1:exon
so has part: feature:174661-174795:-1:exon
so has part: feature:173672-173754:-1:exon
so has part: feature:173438-173570:-1:exon
so has part: feature:172939-173126:-1:exon
so has part: feature:172550-172688:-1:exon
so has part: feature:172387-172447:-1:exon
so has part: feature:171993-172075:-1:exon
so has part: feature:171655-171843:-1:exon
so has part: feature:171302-171498:-1:exon
so has part: feature:171043-171130:-1:exon
so has part: feature:170404-170526:-1:exon
so has part: feature:169928-170061:-1:exon
so has part: feature:169532-169616:-1:exon
so has part: feature:168866-169118:-1:exon
so has part: feature:167984-168067:-1:exon
so has part: feature:166470-167470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:179814-180039:-1:exon

position:179814:-1
position: 179814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:179533-179629:-1:exon

position:179533:-1
position: 179533
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179629:-1
position: 179629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:178484-178562:-1:exon

position:178484:-1
position: 178484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178562:-1
position: 178562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:178086-178240:-1:exon

position:178086:-1
position: 178086
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178240:-1
position: 178240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:177914-177990:-1:exon

position:177914:-1
position: 177914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177990:-1
position: 177990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:176844-177025:-1:exon

position:176844:-1
position: 176844
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177025:-1
position: 177025
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:176156-176271:-1:exon

position:176156:-1
position: 176156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:176271:-1
position: 176271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:175203-175386:-1:exon

position:175203:-1
position: 175203
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:175386:-1
position: 175386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:174661-174795:-1:exon

position:174661:-1
position: 174661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:174795:-1
position: 174795
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:173672-173754:-1:exon

position:173672:-1
position: 173672
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173754:-1
position: 173754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:173438-173570:-1:exon

position:173438:-1
position: 173438
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173570:-1
position: 173570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:172939-173126:-1:exon

position:172939:-1
position: 172939
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:173126:-1
position: 173126
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:172550-172688:-1:exon

position:172550:-1
position: 172550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172688:-1
position: 172688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:172387-172447:-1:exon

position:172387:-1
position: 172387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172447:-1
position: 172447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:171993-172075:-1:exon

position:171993:-1
position: 171993
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:172075:-1
position: 172075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:171655-171843:-1:exon

position:171655:-1
position: 171655
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171843:-1
position: 171843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:171302-171498:-1:exon

position:171302:-1
position: 171302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171498:-1
position: 171498
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:171043-171130:-1:exon

position:171043:-1
position: 171043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:171130:-1
position: 171130
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:170404-170526:-1:exon

position:170404:-1
position: 170404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170526:-1
position: 170526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:169928-170061:-1:exon

position:169928:-1
position: 169928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:170061:-1
position: 170061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:169532-169616:-1:exon

position:169532:-1
position: 169532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:169616:-1
position: 169616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:168866-169118:-1:exon

position:168866:-1
position: 168866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:169118:-1
position: 169118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:167984-168067:-1:exon

position:167984:-1
position: 167984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:168067:-1
position: 168067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:166470-167470:-1:exon

position:167470:-1
position: 167470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

HYOU1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: HYOU1
product: hypoxia up-regulated 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039564921.1
SIO_010081: HYOU1
subclass of: SO_0000673
so part of: HYOU1
location: complement(join(166470..167470,167984..168067,168866..169118,169532..169616,169928..170061,170404..170526,171043..171130,171302..171498,171655..171843,171993..172075,172387..172447,172550..172688,172939..173126,173438..173570,173672..173754,174661..174795,175203..175386,176156..176271,176844..177025,177914..177990,178086..178240,178484..178562,179533..179626,179811..180039))
location: region:166470-180039:-1
so has part: feature:179811-180039:-1:exon
so has part: feature:179533-179626:-1:exon
so has part: feature:178484-178562:-1:exon
so has part: feature:178086-178240:-1:exon
so has part: feature:177914-177990:-1:exon
so has part: feature:176844-177025:-1:exon
so has part: feature:176156-176271:-1:exon
so has part: feature:175203-175386:-1:exon
so has part: feature:174661-174795:-1:exon
so has part: feature:173672-173754:-1:exon
so has part: feature:173438-173570:-1:exon
so has part: feature:172939-173126:-1:exon
so has part: feature:172550-172688:-1:exon
so has part: feature:172387-172447:-1:exon
so has part: feature:171993-172075:-1:exon
so has part: feature:171655-171843:-1:exon
so has part: feature:171302-171498:-1:exon
so has part: feature:171043-171130:-1:exon
so has part: feature:170404-170526:-1:exon
so has part: feature:169928-170061:-1:exon
so has part: feature:169532-169616:-1:exon
so has part: feature:168866-169118:-1:exon
so has part: feature:167984-168067:-1:exon
so has part: feature:166470-167470:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:179811-180039:-1:exon

position:179811:-1
position: 179811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:179533-179626:-1:exon

position:179626:-1
position: 179626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:178484-178562:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:178086-178240:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:177914-177990:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:176844-177025:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:176156-176271:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:175203-175386:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:174661-174795:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173672-173754:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:173438-173570:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:172939-173126:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:172550-172688:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:172387-172447:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:171993-172075:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:171655-171843:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:171302-171498:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:171043-171130:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:170404-170526:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:169928-170061:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:169532-169616:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:168866-169118:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:167984-168067:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:166470-167470:-1:exon

HYOU1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: HYOU1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hypoxia up-regulated protein 1
translation: MSVDVGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVSLKENERLFGDSALGMSIRTPRVAFRYFQDLLGKRIDNPHVALYRSRFPEHELVKDETRQTVIFKLSPTIQYSPEEMLGMVLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTAVALNYGVFRRKDINATAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGTQPQLQIQGIGFDRTLGGLEMELRLRDYLAKLFNEQHPSKDVRKNPRAMAKLLKEANRLKTVLSANADHVAQIEGLLDDIDFKAKVSRQEFEDLCSDLFKRVPGPVQQALSSAEMNMDGIDQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFIVRDAAVFPIQVEFTREVEEEDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYGDLTFLNQDDLRVFGSLNLTTVRLKGVGDSFKKHSDYESKGIKAHFNMDDSGVLSLDRVESVFETLVEDKLEEESTLTKLGNTISSLFGGGGPTPETGENLTDSVQEEEESLAETGKEEQGEKQDQKSSTADAGEEQEQEKQQSSGQAETASPKVESQRKEEGEKLEPQGTKENRETAKEEEPSKSSSDSTATKTEEEKIKVPKKQKLVHEITMELDVNDVPDLVEDELKSSMKKLQDLTIRDLEKQEREKSANSLESFIFETQDKLYQEEYQFVSTEEQREEISKKLNEASSWMEEEGYAAATKELKDKLSELKKLCRNLFFRVEERRKWPERLAALESLLNHSTIFLRGARMIPESDQIFTEVELSTLEKAINETTIWKNETLAEQNKLTPTEKPVLLSKDIEFKIAALDREVQYLLNKAKFAKPKPKREKNATKTDSGKNTTAAPETENTIPPTEGKQEDKPEDIDPAKEPPTAEKAAIDDKPGSDSGSKKEKAEAGGESRKNDEL
SIO_010081: HYOU1
subclass of: SO_0000673
so part of: HYOU1
location: complement(join(167412..167470,167984..168067,168866..169118,169532..169616,169928..170061,170404..170526,171043..171130,171302..171498,171655..171843,171993..172075,172387..172447,172550..172688,172939..173126,173438..173570,173672..173754,174661..174795,175203..175386,176156..176271,176844..177025,177914..177990,178086..178240,178484..178562,179533..179612))
location: region:167412-179612:-1
so has part: feature:179533-179612:-1:exon
so has part: feature:178484-178562:-1:exon
so has part: feature:178086-178240:-1:exon
so has part: feature:177914-177990:-1:exon
so has part: feature:176844-177025:-1:exon
so has part: feature:176156-176271:-1:exon
so has part: feature:175203-175386:-1:exon
so has part: feature:174661-174795:-1:exon
so has part: feature:173672-173754:-1:exon
so has part: feature:173438-173570:-1:exon
so has part: feature:172939-173126:-1:exon
so has part: feature:172550-172688:-1:exon
so has part: feature:172387-172447:-1:exon
so has part: feature:171993-172075:-1:exon
so has part: feature:171655-171843:-1:exon
so has part: feature:171302-171498:-1:exon
so has part: feature:171043-171130:-1:exon
so has part: feature:170404-170526:-1:exon
so has part: feature:169928-170061:-1:exon
so has part: feature:169532-169616:-1:exon
so has part: feature:168866-169118:-1:exon
so has part: feature:167984-168067:-1:exon
so has part: feature:167412-167470:-1:exon

XP_039420854.1
type: Protein
SIO_000068: ncbiprotein

position:167412:-1
position: 167412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:179612:-1
position: 179612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:179533-179612:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:178484-178562:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:178086-178240:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:177914-177990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176844-177025:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:176156-176271:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175203-175386:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:174661-174795:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:173672-173754:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173438-173570:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172939-173126:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:172550-172688:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:172387-172447:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:171993-172075:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:171655-171843:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:171302-171498:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:171043-171130:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:170404-170526:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:169928-170061:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:169532-169616:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:168866-169118:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:167984-168067:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:167412-167470:-1:exon

HYOU1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: HYOU1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hypoxia up-regulated protein 1
translation: MSVDVGSESMKIAIVKPGVPMEIVLNKESRRKTPVAVSLKENERLFGDSALGMSIRTPRVAFRYFQDLLGKRIDNPHVALYRSRFPEHELVKDETRQTVIFKLSPTIQYSPEEMLGMVLNYSRGLAEEFAEQPIKDAVITVPAYFNQAERRAVLHAARMADLKVLQLINDNTAVALNYGVFRRKDINATAQNIMFYDMGAGSTVCTIVTYQTVKTKDSGTQPQLQIQGIGFDRTLGGLEMELRLRDYLAKLFNEQHPSKDVRKNPRAMAKLLKEANRLKTVLSANADHVAQIEGLLDDIDFKAKVSRQEFEDLCSDLFKRVPGPVQQALSSAEMNMDGIDQVILVGGATRVPKVQEVLLKAVGKEELGKNINADEAAAMGAVYQAAALSKAFKVKPFIVRDAAVFPIQVEFTREVEEEDKSKSLKHNKRILFQRMAPYPQRKVITFNRYTDDFEFYVNYGDLTFLNQDDLRVFGSLNLTTVRLKGVGDSFKKHSDYESKGIKAHFNMDDSGVLSLDRVESVFETLVEDKLEEESTLTKLGNTISSLFGGGGPTPETGENLTDSVQEEEESLAETGKEEQGEKQDQKSSTADAGEEQEQEKQQSSGQAETASPKVESQRKEEGEKLEPQGTKENRETAKEEEPSKSSSDSTATKTEEEKIKVPKKQKLVHEITMELDVNDVPDLVEDELKSSMKKLQDLTIRDLEKQEREKSANSLESFIFETQDKLYQEEYQFVSTEEQREEISKKLNEASSWMEEEGYAAATKELKDKLSELKKLCRNLFFRVEERRKWPERLAALESLLNHSTIFLRGARMIPESDQIFTEVELSTLEKAINETTIWKNETLAEQNKLTPTEKPVLLSKDIEFKIAALDREVQYLLNKAKFAKPKPKREKNATKTDSGKNTTAAPETENTIPPTEGKQEDKPEDIDPAKEPPTAEKAAIDDKPGSDSGSKKEKAEAGGESRKNDEL
SIO_010081: HYOU1
subclass of: SO_0000673
so part of: HYOU1
location: complement(join(167412..167470,167984..168067,168866..169118,169532..169616,169928..170061,170404..170526,171043..171130,171302..171498,171655..171843,171993..172075,172387..172447,172550..172688,172939..173126,173438..173570,173672..173754,174661..174795,175203..175386,176156..176271,176844..177025,177914..177990,178086..178240,178484..178562,179533..179612))
location: region:167412-179612:-1
so has part: feature:179533-179612:-1:exon
so has part: feature:178484-178562:-1:exon
so has part: feature:178086-178240:-1:exon
so has part: feature:177914-177990:-1:exon
so has part: feature:176844-177025:-1:exon
so has part: feature:176156-176271:-1:exon
so has part: feature:175203-175386:-1:exon
so has part: feature:174661-174795:-1:exon
so has part: feature:173672-173754:-1:exon
so has part: feature:173438-173570:-1:exon
so has part: feature:172939-173126:-1:exon
so has part: feature:172550-172688:-1:exon
so has part: feature:172387-172447:-1:exon
so has part: feature:171993-172075:-1:exon
so has part: feature:171655-171843:-1:exon
so has part: feature:171302-171498:-1:exon
so has part: feature:171043-171130:-1:exon
so has part: feature:170404-170526:-1:exon
so has part: feature:169928-170061:-1:exon
so has part: feature:169532-169616:-1:exon
so has part: feature:168866-169118:-1:exon
so has part: feature:167984-168067:-1:exon
so has part: feature:167412-167470:-1:exon

XP_039420855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:179533-179612:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:178484-178562:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:178086-178240:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:177914-177990:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:176844-177025:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:176156-176271:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:175203-175386:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:174661-174795:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:173672-173754:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:173438-173570:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:172939-173126:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:172550-172688:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:172387-172447:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:171993-172075:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:171655-171843:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:171302-171498:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:171043-171130:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:170404-170526:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:169928-170061:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:169532-169616:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:168866-169118:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:167984-168067:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:167412-167470:-1:exon

PHLDB1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PHLDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(181168..200230)
location: region:181168-200230:-1
so has part: feature:181168-200230:-1:exon
subclass of: SO_0000010

104692163
type: Gene
SIO_000068: ncbigene

position:181168:-1
position: 181168
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200230:-1
position: 200230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:181168-200230:-1:exon

PHLDB1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PHLDB1
product: pleckstrin homology like domain family B member 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039564829.1
SIO_010081: PHLDB1
subclass of: SO_0000673
so part of: PHLDB1
location: complement(join(181168..181576,181843..181928,182005..182224,182366..182512,182594..182684,182790..183081,183740..183833,183938..184054,187108..187197,187356..187466,187572..187727,190971..191108,191235..191334,191432..191688,192436..193520,194874..194999,196853..197023,197098..197221,197660..197758,199466..199772,200056..200230))
location: region:181168-200230:-1
so has part: feature:200056-200230:-1:exon
so has part: feature:199466-199772:-1:exon
so has part: feature:197660-197758:-1:exon
so has part: feature:197098-197221:-1:exon
so has part: feature:196853-197023:-1:exon
so has part: feature:194874-194999:-1:exon
so has part: feature:192436-193520:-1:exon
so has part: feature:191432-191688:-1:exon
so has part: feature:191235-191334:-1:exon
so has part: feature:190971-191108:-1:exon
so has part: feature:187572-187727:-1:exon
so has part: feature:187356-187466:-1:exon
so has part: feature:187108-187197:-1:exon
so has part: feature:183938-184054:-1:exon
so has part: feature:183740-183833:-1:exon
so has part: feature:182790-183081:-1:exon
so has part: feature:182594-182684:-1:exon
so has part: feature:182366-182512:-1:exon
so has part: feature:182005-182224:-1:exon
so has part: feature:181843-181928:-1:exon
so has part: feature:181168-181576:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:200056-200230:-1:exon

position:200056:-1
position: 200056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:199466-199772:-1:exon

position:199466:-1
position: 199466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:199772:-1
position: 199772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:197660-197758:-1:exon

position:197660:-1
position: 197660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197758:-1
position: 197758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:197098-197221:-1:exon

position:197098:-1
position: 197098
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197221:-1
position: 197221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:196853-197023:-1:exon

position:196853:-1
position: 196853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:197023:-1
position: 197023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:194874-194999:-1:exon

position:194874:-1
position: 194874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:194999:-1
position: 194999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:192436-193520:-1:exon

position:192436:-1
position: 192436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193520:-1
position: 193520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:191432-191688:-1:exon

position:191432:-1
position: 191432
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191688:-1
position: 191688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:191235-191334:-1:exon

position:191235:-1
position: 191235
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191334:-1
position: 191334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:190971-191108:-1:exon

position:190971:-1
position: 190971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:191108:-1
position: 191108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:187572-187727:-1:exon

position:187572:-1
position: 187572
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187727:-1
position: 187727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:187356-187466:-1:exon

position:187356:-1
position: 187356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187466:-1
position: 187466
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:187108-187197:-1:exon

position:187108:-1
position: 187108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:187197:-1
position: 187197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:183938-184054:-1:exon

position:183938:-1
position: 183938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184054:-1
position: 184054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:183740-183833:-1:exon

position:183740:-1
position: 183740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183833:-1
position: 183833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:182790-183081:-1:exon

position:182790:-1
position: 182790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:183081:-1
position: 183081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:182594-182684:-1:exon

position:182594:-1
position: 182594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182684:-1
position: 182684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:182366-182512:-1:exon

position:182366:-1
position: 182366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182512:-1
position: 182512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:182005-182224:-1:exon

position:182005:-1
position: 182005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:182224:-1
position: 182224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:181843-181928:-1:exon

position:181843:-1
position: 181843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:181928:-1
position: 181928
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:181168-181576:-1:exon

position:181576:-1
position: 181576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PHLDB1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PHLDB1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: pleckstrin homology-like domain family B member 1
translation: MPMPWPCPGQWRTVQLWGLLVPDVGRPGLSRQPCAGCTRTVGCLVVTEPDPLAFAAFTASHGGNKRRVLQAAAGEERPPCPPEQWGAGWGGRAPAPHSYSRAGWRGAASPAGRAGVAAGVPCVLTSQPVSSTIQRLQEGTMEASGRTPTSPIHRVQTVIQNSPLDLIDTGKGLKVQTEKPHLVSLGSGRLSTAITLLPLEEGRTTIGTAATDIVLQGPGLAPQHCYIENVRGTLTLHPCGNACAIDGVPLQRPMHLTQGCTICLGQATFLRFNHPAEAKWIKSMIPAGGRSPAAVYGLPAKSEAQVNGGHQLSERGCHSHSSLVSSIEKDLQDIMDSLVLEESASPGIQKPPACSRSPLSPVVNGGGRCLLSPPPSPGAASGGSSYENFSPLSSPASSGSYTSPSLSSQEQGPAVPPLVPLRSSSYNHTVQPPTLPGGGSSEPWPAERLGDHRGGSPWLTPRVAPRPRVALQERPPSPFREPRDSLAPSRQPTSRAVPEARLQPPESPRVARRNIESMRELPPLSPSLSRRAASPRAAPDTPSPQPRLGREVPGSPRARLKGPEESKGAGGPSPPLLAENPARRPSFSSCLSPTYGLGSPAVPSPQQSPRTPRKPLGNPRLPAGSRERKNSITEISDNEDELLEYHRRQRQERVREQEMERLERQRLETILNLCAEYTKTDGTEPGDVHRLLAGDTDAGRWVPRGAMALGHAVEELQQREILERSDEENLKEECSSTESTHHEVRGQLGLEEERASVLGRLDQLKGRVKELEQQLQETSREAEMERALLQGERESEVLRLRQEQEAVQQLQEKLSSLDASIRKERDKEAEALETEAKLFEDLEFQQLERESHLEEEHEARGQQLLQSRAECHRSIARRKERVAALDAQAAQIRLQSAQEAERLARERSSILQLLQKEKEKLVSLERRYQLVTGGRSFPRMSSALREVYRAKTEGGAGVLTPRMKSGTPSSSQLNLSMLECSPSPKGPPSPAGSLSRNLVATLQDIETKRQLALQQKGQQVIEEQKRRLAELKQKAAAEAQSQWEALHGQPPFPTAFPRLVHHSILHHHRPHGAGPRAEELDHAYDTLSLESSDSMETSISLGNNSACSPDTISSASGMETGKIEEMEKMLKEAHEEKSRLMESREREMELRQQALEDERWRREQLERRLQDETVRRQKLVEKEVKLREKHFSQARPLTRYLPIRKEDFNLRLHIESSGHNIDTCYHVILTEKMCKGYLVKMGGKIKSWKKRWFVFDRMKRTLSYYVDKHETKLKGVIYFQAIEEVYYDHLRSAAKSPNPALTFCVKTHDRLYYMVAPSAEAMRIWMDVIVTGAEGYTQFMN
SIO_010081: PHLDB1
subclass of: SO_0000673
so part of: PHLDB1
location: complement(join(181436..181576,181843..181928,182005..182224,182366..182512,182594..182684,182790..183081,183740..183833,183938..184054,187108..187197,187356..187466,187572..187727,190971..191108,191235..191334,191432..191688,192436..193520,194874..194999,196853..197023,197098..197221,197660..197758,199466..199772,200056..200129))
location: region:181436-200129:-1
so has part: feature:200056-200129:-1:exon
so has part: feature:199466-199772:-1:exon
so has part: feature:197660-197758:-1:exon
so has part: feature:197098-197221:-1:exon
so has part: feature:196853-197023:-1:exon
so has part: feature:194874-194999:-1:exon
so has part: feature:192436-193520:-1:exon
so has part: feature:191432-191688:-1:exon
so has part: feature:191235-191334:-1:exon
so has part: feature:190971-191108:-1:exon
so has part: feature:187572-187727:-1:exon
so has part: feature:187356-187466:-1:exon
so has part: feature:187108-187197:-1:exon
so has part: feature:183938-184054:-1:exon
so has part: feature:183740-183833:-1:exon
so has part: feature:182790-183081:-1:exon
so has part: feature:182594-182684:-1:exon
so has part: feature:182366-182512:-1:exon
so has part: feature:182005-182224:-1:exon
so has part: feature:181843-181928:-1:exon
so has part: feature:181436-181576:-1:exon

XP_039420763.1
type: Protein
SIO_000068: ncbiprotein

position:181436:-1
position: 181436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:200129:-1
position: 200129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:200056-200129:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:199466-199772:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197660-197758:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:197098-197221:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:196853-197023:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:194874-194999:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:192436-193520:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:191432-191688:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:191235-191334:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:190971-191108:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:187572-187727:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:187356-187466:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:187108-187197:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:183938-184054:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:183740-183833:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:182790-183081:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:182594-182684:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:182366-182512:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:182005-182224:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:181843-181928:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:181436-181576:-1:exon

ARCN1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ARCN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(202361..210714)
location: region:202361-210714:-1
so has part: feature:202361-210714:-1:exon
subclass of: SO_0000010

104692164
type: Gene
SIO_000068: ncbigene

position:202361:-1
position: 202361
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:210714:-1
position: 210714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:202361-210714:-1:exon

ARCN1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ARCN1
product: archain 1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 61 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564823.1
SIO_010081: ARCN1
subclass of: SO_0000673
so part of: ARCN1
location: complement(join(202361..203954,204507..204711,204874..204982,205280..205427,206663..206828,207459..207620,208033..208238,208481..208660,209251..209514,210608..210714))
location: region:202361-210714:-1
so has part: feature:210608-210714:-1:exon
so has part: feature:209251-209514:-1:exon
so has part: feature:208481-208660:-1:exon
so has part: feature:208033-208238:-1:exon
so has part: feature:207459-207620:-1:exon
so has part: feature:206663-206828:-1:exon
so has part: feature:205280-205427:-1:exon
so has part: feature:204874-204982:-1:exon
so has part: feature:204507-204711:-1:exon
so has part: feature:202361-203954:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:210608-210714:-1:exon

position:210608:-1
position: 210608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:209251-209514:-1:exon

position:209251:-1
position: 209251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:209514:-1
position: 209514
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:208481-208660:-1:exon

position:208481:-1
position: 208481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:208660:-1
position: 208660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:208033-208238:-1:exon

position:208033:-1
position: 208033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:208238:-1
position: 208238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:207459-207620:-1:exon

position:207459:-1
position: 207459
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:207620:-1
position: 207620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:206663-206828:-1:exon

position:206663:-1
position: 206663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:206828:-1
position: 206828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:205280-205427:-1:exon

position:205280:-1
position: 205280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:205427:-1
position: 205427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:204874-204982:-1:exon

position:204874:-1
position: 204874
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:204982:-1
position: 204982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:204507-204711:-1:exon

position:204507:-1
position: 204507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:204711:-1
position: 204711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:202361-203954:-1:exon

position:203954:-1
position: 203954
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ARCN1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ARCN1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: coatomer subunit delta
translation: MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERHGKKAPGFGGFGSSAVSGGTTTAMITETIIETEKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGENIMTSVGKRSAEAAKVLAPPVNMESVHMKIEEKISLTCGRDGGLQNMELHGMIMLHISDEKFARIRLHVENEDKRGVQLQTHPNVDKKLFTTESQIGLKNPEKSFPINSDVGVLKWRLQTTEESFIPLTINCWPSESGNSCDVNIEYELQEESLELNDVIITIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVIDAKNKSGSLEFSIAGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL
SIO_010081: ARCN1
subclass of: SO_0000673
so part of: ARCN1
location: complement(join(203865..203954,204507..204711,204874..204982,205280..205427,206663..206828,207459..207620,208033..208238,208481..208660,209251..209514,210608..210610))
location: region:203865-210610:-1
so has part: feature:210608-210610:-1:exon
so has part: feature:209251-209514:-1:exon
so has part: feature:208481-208660:-1:exon
so has part: feature:208033-208238:-1:exon
so has part: feature:207459-207620:-1:exon
so has part: feature:206663-206828:-1:exon
so has part: feature:205280-205427:-1:exon
so has part: feature:204874-204982:-1:exon
so has part: feature:204507-204711:-1:exon
so has part: feature:203865-203954:-1:exon

XP_039420757.1
type: Protein
SIO_000068: ncbiprotein

position:203865:-1
position: 203865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:210610:-1
position: 210610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210608-210610:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:209251-209514:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:208481-208660:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:208033-208238:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:207459-207620:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:206663-206828:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:205280-205427:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:204874-204982:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:204507-204711:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:203865-203954:-1:exon

IFT46
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: IFT46
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 210825..215123
location: region:210825-215123:1
so has part: feature:210825-215123:1:exon
subclass of: SO_0000010

104692046
type: Gene
SIO_000068: ncbigene

position:210825:1
position: 210825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:215123:1
position: 215123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210825-215123:1:exon

IFT46
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: IFT46
product: intraflagellar transport 46
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
transcript id: XM_039564728.1
SIO_010081: IFT46
subclass of: SO_0000673
so part of: IFT46
location: join(210825..210872,211287..211439,211515..211651,212300..212374,212473..212566,212910..213038,213421..213542,213613..213679,213927..213987,214257..214342,214684..215123)
location: region:210825-215123:1
so has part: feature:210825-210872:1:exon
so has part: feature:211287-211439:1:exon
so has part: feature:211515-211651:1:exon
so has part: feature:212300-212374:1:exon
so has part: feature:212473-212566:1:exon
so has part: feature:212910-213038:1:exon
so has part: feature:213421-213542:1:exon
so has part: feature:213613-213679:1:exon
so has part: feature:213927-213987:1:exon
so has part: feature:214257-214342:1:exon
so has part: feature:214684-215123:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:210825-210872:1:exon

position:210872:1
position: 210872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:211287-211439:1:exon

position:211287:1
position: 211287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211439:1
position: 211439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:211515-211651:1:exon

position:211515:1
position: 211515
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:211651:1
position: 211651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:212300-212374:1:exon

position:212300:1
position: 212300
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212374:1
position: 212374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:212473-212566:1:exon

position:212473:1
position: 212473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212566:1
position: 212566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:212910-213038:1:exon

position:212910:1
position: 212910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213038:1
position: 213038
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:213421-213542:1:exon

position:213421:1
position: 213421
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213542:1
position: 213542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:213613-213679:1:exon

position:213613:1
position: 213613
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213679:1
position: 213679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:213927-213987:1:exon

position:213927:1
position: 213927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:213987:1
position: 213987
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:214257-214342:1:exon

position:214257:1
position: 214257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:214342:1
position: 214342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:214684-215123:1:exon

position:214684:1
position: 214684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

IFT46
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: IFT46
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: intraflagellar transport protein 46 homolog
translation: MATAAAAARRDARRAEPRPVENQPYDESLELPEAGARSPRAGGAGRLRDSRRAGVSVGAAERGSGGKEEAAAHLPGPATLSEDDDEDDEDSEEDSSESDSEEDSEEHGAALEGDFNPADFDYLQVSSEIKDLFEYIKRYTPKTIEIEHKLQPFIPDFIPAVGDIDAFLKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQQIKVKSLENAEKNPKAIESWIESISELHRCKPPATVHYSRPMPDIETLMQEWSPEFEELLGKVGLPPAEMSCDLAEYIDMICAILDIPVYKSRIHPLHVLFSLFLEFKNSQHFKPLADGQKSRSPPSNPPSQAAEAEVLSFN
SIO_010081: IFT46
subclass of: SO_0000673
so part of: IFT46
location: join(210825..210872,211287..211439,211515..211651,212300..212374,212473..212566,212910..213038,213421..213542,213613..213679,213927..213987,214257..214342,214684..214779)
location: region:210825-214779:1
so has part: feature:210825-210872:1:exon
so has part: feature:211287-211439:1:exon
so has part: feature:211515-211651:1:exon
so has part: feature:212300-212374:1:exon
so has part: feature:212473-212566:1:exon
so has part: feature:212910-213038:1:exon
so has part: feature:213421-213542:1:exon
so has part: feature:213613-213679:1:exon
so has part: feature:213927-213987:1:exon
so has part: feature:214257-214342:1:exon
so has part: feature:214684-214779:1:exon

XP_039420662.1
type: Protein
SIO_000068: ncbiprotein

position:214779:1
position: 214779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:210825-210872:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:211287-211439:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:211515-211651:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:212300-212374:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:212473-212566:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:212910-213038:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:213421-213542:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:213613-213679:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:213927-213987:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:214257-214342:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:214684-214779:1:exon

TMEM25
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TMEM25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(215265..217791)
location: region:215265-217791:-1
so has part: feature:215265-217791:-1:exon
subclass of: SO_0000010

104692047
type: Gene
SIO_000068: ncbigene

position:215265:-1
position: 215265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217791:-1
position: 217791
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:215265-217791:-1:exon

TMEM25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TMEM25
product: transmembrane protein 25, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
transcript id: XM_039564824.1
SIO_010081: TMEM25
subclass of: SO_0000673
so part of: TMEM25
location: complement(join(215265..215758,215856..215942,216044..216328,216403..216693,216934..217218,217515..217791))
location: region:215265-217791:-1
so has part: feature:217515-217791:-1:exon
so has part: feature:216934-217218:-1:exon
so has part: feature:216403-216693:-1:exon
so has part: feature:216044-216328:-1:exon
so has part: feature:215856-215942:-1:exon
so has part: feature:215265-215758:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:217515-217791:-1:exon

position:217515:-1
position: 217515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:216934-217218:-1:exon

position:216934:-1
position: 216934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217218:-1
position: 217218
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:216403-216693:-1:exon

position:216403:-1
position: 216403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216693:-1
position: 216693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:216044-216328:-1:exon

position:216044:-1
position: 216044
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:216328:-1
position: 216328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:215856-215942:-1:exon

position:215856:-1
position: 215856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:215942:-1
position: 215942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:215265-215758:-1:exon

position:215758:-1
position: 215758
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TMEM25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TMEM25
product: transmembrane protein 25, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
transcript id: XM_039564825.1
SIO_010081: TMEM25
subclass of: SO_0000673
so part of: TMEM25
location: complement(join(215265..215758,215856..215942,216044..216328,216403..216693,216934..217218,217302..217408,217515..217606))
location: region:215265-217606:-1
so has part: feature:217515-217606:-1:exon
so has part: feature:217302-217408:-1:exon
so has part: feature:216934-217218:-1:exon
so has part: feature:216403-216693:-1:exon
so has part: feature:216044-216328:-1:exon
so has part: feature:215856-215942:-1:exon
so has part: feature:215265-215758:-1:exon

position:217606:-1
position: 217606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217515-217606:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:217302-217408:-1:exon

position:217302:-1
position: 217302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217408:-1
position: 217408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:216934-217218:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:216403-216693:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216044-216328:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:215856-215942:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:215265-215758:-1:exon

TMEM25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TMEM25
product: transmembrane protein 25, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_039564826.1
SIO_010081: TMEM25
subclass of: SO_0000673
so part of: TMEM25
location: complement(join(215265..215758,215856..215942,216044..216328,216403..216693,216934..217218,217302..217423,217515..217605))
location: region:215265-217605:-1
so has part: feature:217515-217605:-1:exon
so has part: feature:217302-217423:-1:exon
so has part: feature:216934-217218:-1:exon
so has part: feature:216403-216693:-1:exon
so has part: feature:216044-216328:-1:exon
so has part: feature:215856-215942:-1:exon
so has part: feature:215265-215758:-1:exon

position:217605:-1
position: 217605
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217515-217605:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:217302-217423:-1:exon

position:217423:-1
position: 217423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:216934-217218:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:216403-216693:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:216044-216328:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:215856-215942:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:215265-215758:-1:exon

TMEM25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TMEM25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 25 isoform X1
translation: MTARSRAGARPCAACTALRAGAQAQSRTADWAGHSSSNAAALGELDPTTDGQPRAVCTLQHGESHVFTCWVPRPVRGATLAWYLNDQKQEVNLSTADAARILTLTGQHSDHQLNCSLTNLTSTETYNTSILLNVQYKPEILQKGARYQEVKGSGLLLVLFVLVQANPPTSITWMDQDGHVMANASKFLLLGATSYPGLANRLLHIHLSCTAGNLSVSAAKSVGITTASLLPTGLLDARVELPVLGVAIGAALALAALLSLGSCAACLACRLPKLVQGPGQAEGNSPPSQCSHCNSSESPQPQGTRLPRQTRSLPPNLRLGDLAQEDGASPKDAGAGAGGEESALLGLENSLVLSKLGFVQLPMSGRIYKVPSMSSDEIWL
SIO_010081: TMEM25
subclass of: SO_0000673
so part of: TMEM25
location: complement(join(215685..215758,215856..215942,216044..216328,216403..216693,216934..217218,217515..217635))
location: region:215685-217635:-1
so has part: feature:217515-217635:-1:exon
so has part: feature:216934-217218:-1:exon
so has part: feature:216403-216693:-1:exon
so has part: feature:216044-216328:-1:exon
so has part: feature:215856-215942:-1:exon
so has part: feature:215685-215758:-1:exon

XP_039420758.1
type: Protein
SIO_000068: ncbiprotein

position:215685:-1
position: 215685
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:217635:-1
position: 217635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217515-217635:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:216934-217218:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:216403-216693:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:216044-216328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:215856-215942:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:215685-215758:-1:exon

TMEM25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TMEM25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 25 isoform X2
translation: MGCPRGWPGAALALLLLLLLSRLVLCLAALGELDPTTDGQPRAVCTLQHGESHVFTCWVPRPVRGATLAWYLNDQKQEVNLSTADAARILTLTGQHSDHQLNCSLTNLTSTETYNTSILLNVQYKPEILQKGARYQEVKGSGLLLVLFVLVQANPPTSITWMDQDGHVMANASKFLLLGATSYPGLANRLLHIHLSCTAGNLSVSAAKSVGITTASLLPTGLLDARVELPVLGVAIGAALALAALLSLGSCAACLACRLPKLVQGPGQAEGNSPPSQCSHCNSSESPQPQGTRLPRQTRSLPPNLRLGDLAQEDGASPKDAGAGAGGEESALLGLENSLVLSKLGFVQLPMSGRIYKVPSMSSDEIWL
SIO_010081: TMEM25
subclass of: SO_0000673
so part of: TMEM25
location: complement(join(215685..215758,215856..215942,216044..216328,216403..216693,216934..217218,217302..217386))
location: region:215685-217386:-1
so has part: feature:217302-217386:-1:exon
so has part: feature:216934-217218:-1:exon
so has part: feature:216403-216693:-1:exon
so has part: feature:216044-216328:-1:exon
so has part: feature:215856-215942:-1:exon
so has part: feature:215685-215758:-1:exon

XP_039420759.1
type: Protein
SIO_000068: ncbiprotein

position:217386:-1
position: 217386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217302-217386:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:216934-217218:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:216403-216693:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:216044-216328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:215856-215942:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:215685-215758:-1:exon

TMEM25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TMEM25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transmembrane protein 25 isoform X2
translation: MGCPRGWPGAALALLLLLLLSRLVLCLAALGELDPTTDGQPRAVCTLQHGESHVFTCWVPRPVRGATLAWYLNDQKQEVNLSTADAARILTLTGQHSDHQLNCSLTNLTSTETYNTSILLNVQYKPEILQKGARYQEVKGSGLLLVLFVLVQANPPTSITWMDQDGHVMANASKFLLLGATSYPGLANRLLHIHLSCTAGNLSVSAAKSVGITTASLLPTGLLDARVELPVLGVAIGAALALAALLSLGSCAACLACRLPKLVQGPGQAEGNSPPSQCSHCNSSESPQPQGTRLPRQTRSLPPNLRLGDLAQEDGASPKDAGAGAGGEESALLGLENSLVLSKLGFVQLPMSGRIYKVPSMSSDEIWL
SIO_010081: TMEM25
subclass of: SO_0000673
so part of: TMEM25
location: complement(join(215685..215758,215856..215942,216044..216328,216403..216693,216934..217218,217302..217386))
location: region:215685-217386:-1
so has part: feature:217302-217386:-1:exon
so has part: feature:216934-217218:-1:exon
so has part: feature:216403-216693:-1:exon
so has part: feature:216044-216328:-1:exon
so has part: feature:215856-215942:-1:exon
so has part: feature:215685-215758:-1:exon

XP_039420760.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:217302-217386:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:216934-217218:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:216403-216693:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:216044-216328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:215856-215942:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:215685-215758:-1:exon

TTC36
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TTC36
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(217891..219033)
location: region:217891-219033:-1
so has part: feature:217891-219033:-1:exon
subclass of: SO_0000010

104692165
type: Gene
SIO_000068: ncbigene

position:217891:-1
position: 217891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:219033:-1
position: 219033
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:217891-219033:-1:exon

TTC36
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TTC36
product: tetratricopeptide repeat domain 36
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
transcript id: XM_039564828.1
SIO_010081: TTC36
subclass of: SO_0000673
so part of: TTC36
location: complement(join(217891..218384,218455..218643,218888..219033))
location: region:217891-219033:-1
so has part: feature:218888-219033:-1:exon
so has part: feature:218455-218643:-1:exon
so has part: feature:217891-218384:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:218888-219033:-1:exon

position:218888:-1
position: 218888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:218455-218643:-1:exon

position:218455:-1
position: 218455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218643:-1
position: 218643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:217891-218384:-1:exon

position:218384:-1
position: 218384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TTC36
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TTC36
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: tetratricopeptide repeat protein 36
translation: MAMANDRAVLQTIFNPSTPFGDIPGLDEEEDDVQDEVEAFPLELLDQVRELELQGVSAAESGDISTALERFNEAIRLLPERASGYNNRAQALRLRGDVAGALQDLDAAIRLSRGRGRAACQSFVQRGLIRRLQARDEEARRDWERAARLGSAFARQQLVLLNPYSALCNQMLCEMLGRLRNPDGTGSD
SIO_010081: TTC36
subclass of: SO_0000673
so part of: TTC36
location: complement(join(218116..218384,218455..218643,218888..218996))
location: region:218116-218996:-1
so has part: feature:218888-218996:-1:exon
so has part: feature:218455-218643:-1:exon
so has part: feature:218116-218384:-1:exon

XP_039420762.1
type: Protein
SIO_000068: ncbiprotein

position:218116:-1
position: 218116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:218996:-1
position: 218996
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:218888-218996:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:218455-218643:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:218116-218384:-1:exon

KMT2A
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: KMT2A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(219475..261303)
location: region:219475-261303:-1
so has part: feature:219475-261303:-1:exon
subclass of: SO_0000010

104692048
type: Gene
SIO_000068: ncbigene

position:219475:-1
position: 219475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:261303:-1
position: 261303
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:219475-261303:-1:exon

KMT2A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: KMT2A
product: lysine methyltransferase 2A
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 24 ESTs, 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
transcript id: XM_039564830.1
SIO_010081: KMT2A
subclass of: SO_0000673
so part of: KMT2A
location: complement(join(219475..223588,223938..224067,224395..224478,224915..225022,225411..225585,225847..225921,226447..226617,227002..227066,227585..227665,227979..232278,232898..233083,233737..233897,234148..234226,234306..234423,234711..234869,235375..235512,235656..235762,236076..236269,236753..236826,237077..237187,237932..238105,238694..238878,239225..239338,240100..240220,241013..241108,241363..241509,242658..242771,243628..243756,244356..244429,245045..245416,245948..246012,247007..247241,247598..247775,249054..251719,252763..252832,260966..261303))
location: region:219475-261303:-1
so has part: feature:260966-261303:-1:exon
so has part: feature:252763-252832:-1:exon
so has part: feature:249054-251719:-1:exon
so has part: feature:247598-247775:-1:exon
so has part: feature:247007-247241:-1:exon
so has part: feature:245948-246012:-1:exon
so has part: feature:245045-245416:-1:exon
so has part: feature:244356-244429:-1:exon
so has part: feature:243628-243756:-1:exon
so has part: feature:242658-242771:-1:exon
so has part: feature:241363-241509:-1:exon
so has part: feature:241013-241108:-1:exon
so has part: feature:240100-240220:-1:exon
so has part: feature:239225-239338:-1:exon
so has part: feature:238694-238878:-1:exon
so has part: feature:237932-238105:-1:exon
so has part: feature:237077-237187:-1:exon
so has part: feature:236753-236826:-1:exon
so has part: feature:236076-236269:-1:exon
so has part: feature:235656-235762:-1:exon
so has part: feature:235375-235512:-1:exon
so has part: feature:234711-234869:-1:exon
so has part: feature:234306-234423:-1:exon
so has part: feature:234148-234226:-1:exon
so has part: feature:233737-233897:-1:exon
so has part: feature:232898-233083:-1:exon
so has part: feature:227979-232278:-1:exon
so has part: feature:227585-227665:-1:exon
so has part: feature:227002-227066:-1:exon
so has part: feature:226447-226617:-1:exon
so has part: feature:225847-225921:-1:exon
so has part: feature:225411-225585:-1:exon
so has part: feature:224915-225022:-1:exon
so has part: feature:224395-224478:-1:exon
so has part: feature:223938-224067:-1:exon
so has part: feature:219475-223588:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:260966-261303:-1:exon

position:260966:-1
position: 260966
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:252763-252832:-1:exon

position:252763:-1
position: 252763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:252832:-1
position: 252832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:249054-251719:-1:exon

position:249054:-1
position: 249054
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:251719:-1
position: 251719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:247598-247775:-1:exon

position:247598:-1
position: 247598
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247775:-1
position: 247775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:247007-247241:-1:exon

position:247007:-1
position: 247007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:247241:-1
position: 247241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:245948-246012:-1:exon

position:245948:-1
position: 245948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:246012:-1
position: 246012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:245045-245416:-1:exon

position:245045:-1
position: 245045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:245416:-1
position: 245416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:244356-244429:-1:exon

position:244356:-1
position: 244356
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:244429:-1
position: 244429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:243628-243756:-1:exon

position:243628:-1
position: 243628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:243756:-1
position: 243756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:242658-242771:-1:exon

position:242658:-1
position: 242658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:242771:-1
position: 242771
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:241363-241509:-1:exon

position:241363:-1
position: 241363
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241509:-1
position: 241509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:241013-241108:-1:exon

position:241013:-1
position: 241013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241108:-1
position: 241108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:240100-240220:-1:exon

position:240100:-1
position: 240100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:240220:-1
position: 240220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:239225-239338:-1:exon

position:239225:-1
position: 239225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:239338:-1
position: 239338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:238694-238878:-1:exon

position:238694:-1
position: 238694
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238878:-1
position: 238878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:237932-238105:-1:exon

position:237932:-1
position: 237932
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238105:-1
position: 238105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:237077-237187:-1:exon

position:237077:-1
position: 237077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:237187:-1
position: 237187
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:236753-236826:-1:exon

position:236753:-1
position: 236753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236826:-1
position: 236826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:236076-236269:-1:exon

position:236076:-1
position: 236076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:236269:-1
position: 236269
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:235656-235762:-1:exon

position:235656:-1
position: 235656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235762:-1
position: 235762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:235375-235512:-1:exon

position:235375:-1
position: 235375
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235512:-1
position: 235512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:234711-234869:-1:exon

position:234711:-1
position: 234711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234869:-1
position: 234869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:234306-234423:-1:exon

position:234306:-1
position: 234306
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234423:-1
position: 234423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:234148-234226:-1:exon

position:234148:-1
position: 234148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234226:-1
position: 234226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:233737-233897:-1:exon

position:233737:-1
position: 233737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233897:-1
position: 233897
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:232898-233083:-1:exon

position:232898:-1
position: 232898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233083:-1
position: 233083
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:227979-232278:-1:exon

position:227979:-1
position: 227979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232278:-1
position: 232278
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:227585-227665:-1:exon

position:227585:-1
position: 227585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227665:-1
position: 227665
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:227002-227066:-1:exon

position:227002:-1
position: 227002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227066:-1
position: 227066
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:226447-226617:-1:exon

position:226447:-1
position: 226447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:226617:-1
position: 226617
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:225847-225921:-1:exon

position:225847:-1
position: 225847
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225921:-1
position: 225921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:225411-225585:-1:exon

position:225411:-1
position: 225411
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225585:-1
position: 225585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 33
SIO_000628: feature:224915-225022:-1:exon

position:224915:-1
position: 224915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:225022:-1
position: 225022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 34
SIO_000628: feature:224395-224478:-1:exon

position:224395:-1
position: 224395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224478:-1
position: 224478
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 35
SIO_000628: feature:223938-224067:-1:exon

position:223938:-1
position: 223938
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:224067:-1
position: 224067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 36
SIO_000628: feature:219475-223588:-1:exon

position:223588:-1
position: 223588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KMT2A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: KMT2A
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2A
translation: MAHSGRWRFPARPGSGGWGRRGXGGSRLRVPAVHSLRPAEPAAAPATAGEGERGGPCSGGAAGSGGGGAAPGPGGPAAAAGPGFDAALQVSATIGINLRRFRAACGTEAGSGEDEQFLGFGSDEEVKVRSPTRSPTVKSSPRKPRGRPRSSSDRSSAVLSDSSSVCSPSSKSETTSMEKVKKKESKSGEKRRGRPPTLTSVKFKLSQEKDTSDTQKGSKEEKESLKKIKRSPSTTFQQATKIKKLRTSKLSPLKSKFKPGAKLQIGRKSVQIVRRRGRPPSSERLKTSSTLVINSQLEKPQRIRKEKDGTPPLTKEEKAAIRQSPRRIKPVRIIPSTKRTDAAIAKQLLQRAKKGAQKKIEKEAAKLQGRKGRTQLKNIRQFIMPVVSAISSRIIKTPKRFIEDEDYDPPIKISRLESTPNSRFSATSCGSSEKSSAASQHSSQMSSDSSRSSSPSVDTSTDSQASEEMQMLSEERSNTPEVHTPLPVSQSPENDNGDRRNRRFSITERSFGQRTAKKLSALPSVPQQQTSSSPPPPLLTPPPPLQPASSISDHTPWLMPPTIPLASPFLPASAAPMQEKRKSILREPTFRWTSLKHSRSEPQYFSSAKYAKEGLIRKPIFDNFRPPPLTPEDVGFASGFSTPGATAPTRLFSLHSGARFDMHKRSPLLRAPRFTPSEAHSRIFESVTLPSSVGRATTGTSATGTSSRRRKRKAFSPIRSEPRSPSHSMRTRSGRLSTSDLTTLTPQSSVSSSLTSISVSSLATSALNSTFTFPSHSLSQSGESAERSQRPRKQTSTPAEPFSSGSPTPLFPWFTSSPQTERGKNKDRAAEELSKDKDADKGLEKDKNREKDREREKENKRESRKEKRRKGSEIQSSAALFPVGKMPKEKASEDAAASSSAKKTAGRKKSTAVDPVTDISTAALVDMAAVKTKTSKKGRGGLDKSDLDLSPTVPSLEKEKALRLSAPSSSTVKHSASSISSMLAQADKLPMTDKRVASLLKKAKAQLYKIEKSKSLKQADQPKAQGQESDSSETSVRGPRIKHVCRRAAVALGRKRAVFPDDMPTLSALPWEEREKILSSMGNDDKSSIAGSEEAEPLAPPIKPIKPVTRNKAQQEPPVKKGRRSRRCGQCSGCQVPEDCGVCTNCLDKPKFGGRNIKKQCCKMRKCQNLQWMPSKAYLQKQAKAAKKKEKKSKTNEKKESHSGKNQLDSGQKQTPQAVVPREDNSGKKSSEPARKPVEEKHEDGNSSVSVSEPKQVPASGTRKTGKQMCQPVQLSPSQPPSSGPLKKEAPKLSTSEPKKKQTPQPEIGTEQSKQKKIAPRPTFPVKQKPKEKEKPPPLSKPESSTLNLLSTLTNGSSSKQKPPTDGVHRIRVDFKEDCEVENIWEMGGLGIVTSVPITPRVVCFLCASSGHVEFVYCQVCCEPFHKFCLEESERPQEDQLENWCCRRCKFCHVCGRQHQATKQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCVRCKSCGSTTPGKGWDAQWSHDFSLCHDCAKLFAKGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCINCTEQHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQAAKPPDLNPETEESIPSRSSPEGPDPPVLTEVSKQEEQQPLDLEGVKRKMDQGGYTSVLDFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSRFWEPNKVTSNSGMLPNAVLPPSLDHNYAQWQEREENNRTEQPPLMKKIIPAPKLKGPGEPDSPTPLHPPTPPISGSDGSREDSPELNPPPDVEDNRQCALCLKYGDDSANDAGRLLYIGQNEWTHVNCALWSAEVFEDDDGSLKNVHMAVIRGKQLRCEFCQKSGATVGCCLTSCTSNYHFMCSRAKNCVFLDDKKVYCQRHRDLIKGEVVPENGFEVLRRVFVDFEGISLRRKFLSGLEPENIHMMIGSMTIDC…
SIO_010081: KMT2A
subclass of: SO_0000673
so part of: KMT2A
location: complement(join(223313..223588,223938..224067,224395..224478,224915..225022,225411..225585,225847..225921,226447..226617,227002..227066,227585..227665,227979..232278,232898..233083,233737..233897,234148..234226,234306..234423,234711..234869,235375..235512,235656..235762,236076..236269,236753..236826,237077..237187,237932..238105,238694..238878,239225..239338,240100..240220,241013..241108,241363..241509,242658..242771,243628..243756,244356..244429,245045..245416,245948..246012,247007..247241,247598..247775,249054..251719,252763..252832,260966..261303))
location: region:223313-261303:-1
so has part: feature:260966-261303:-1:exon
so has part: feature:252763-252832:-1:exon
so has part: feature:249054-251719:-1:exon
so has part: feature:247598-247775:-1:exon
so has part: feature:247007-247241:-1:exon
so has part: feature:245948-246012:-1:exon
so has part: feature:245045-245416:-1:exon
so has part: feature:244356-244429:-1:exon
so has part: feature:243628-243756:-1:exon
so has part: feature:242658-242771:-1:exon
so has part: feature:241363-241509:-1:exon
so has part: feature:241013-241108:-1:exon
so has part: feature:240100-240220:-1:exon
so has part: feature:239225-239338:-1:exon
so has part: feature:238694-238878:-1:exon
so has part: feature:237932-238105:-1:exon
so has part: feature:237077-237187:-1:exon
so has part: feature:236753-236826:-1:exon
so has part: feature:236076-236269:-1:exon
so has part: feature:235656-235762:-1:exon
so has part: feature:235375-235512:-1:exon
so has part: feature:234711-234869:-1:exon
so has part: feature:234306-234423:-1:exon
so has part: feature:234148-234226:-1:exon
so has part: feature:233737-233897:-1:exon
so has part: feature:232898-233083:-1:exon
so has part: feature:227979-232278:-1:exon
so has part: feature:227585-227665:-1:exon
so has part: feature:227002-227066:-1:exon
so has part: feature:226447-226617:-1:exon
so has part: feature:225847-225921:-1:exon
so has part: feature:225411-225585:-1:exon
so has part: feature:224915-225022:-1:exon
so has part: feature:224395-224478:-1:exon
so has part: feature:223938-224067:-1:exon
so has part: feature:223313-223588:-1:exon

XP_039420764.1
type: Protein
SIO_000068: ncbiprotein

position:223313:-1
position: 223313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:260966-261303:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:252763-252832:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:249054-251719:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:247598-247775:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:247007-247241:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:245948-246012:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:245045-245416:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:244356-244429:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:243628-243756:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:242658-242771:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:241363-241509:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:241013-241108:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:240100-240220:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:239225-239338:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:238694-238878:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:237932-238105:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:237077-237187:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:236753-236826:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:236076-236269:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:235656-235762:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:235375-235512:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:234711-234869:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:234306-234423:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:234148-234226:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:233737-233897:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:232898-233083:-1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:227979-232278:-1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:227585-227665:-1:exon

urn:…
SIO_000300: 29
SIO_000628: feature:227002-227066:-1:exon

urn:…
SIO_000300: 30
SIO_000628: feature:226447-226617:-1:exon

urn:…
SIO_000300: 31
SIO_000628: feature:225847-225921:-1:exon

urn:…
SIO_000300: 32
SIO_000628: feature:225411-225585:-1:exon

urn:…
SIO_000300: 33
SIO_000628: feature:224915-225022:-1:exon

urn:…
SIO_000300: 34
SIO_000628: feature:224395-224478:-1:exon

urn:…
SIO_000300: 35
SIO_000628: feature:223938-224067:-1:exon

urn:…
SIO_000300: 36
SIO_000628: feature:223313-223588:-1:exon

ATP5MG
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ATP5MG
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(263878..265147)
location: region:263878-265147:-1
so has part: feature:263878-265147:-1:exon
subclass of: SO_0000010

104692049
type: Gene
SIO_000068: ncbigene

position:263878:-1
position: 263878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265147:-1
position: 265147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:263878-265147:-1:exon

ATP5MG
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ATP5MG
product: ATP synthase membrane subunit g
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 mRNAs, 4 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
transcript id: XM_039564767.1
SIO_010081: ATP5MG
subclass of: SO_0000673
so part of: ATP5MG
location: complement(join(263878..264060,264637..264797,265006..265147))
location: region:263878-265147:-1
so has part: feature:265006-265147:-1:exon
so has part: feature:264637-264797:-1:exon
so has part: feature:263878-264060:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:265006-265147:-1:exon

position:265006:-1
position: 265006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:264637-264797:-1:exon

position:264637:-1
position: 264637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:264797:-1
position: 264797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:263878-264060:-1:exon

position:264060:-1
position: 264060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ATP5MG
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ATP5MG
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ATP synthase subunit g, mitochondrial
translation: MAKAAQGLVQRLVQRGPELIGAAVTYSKPRLATFWYYAKVELAPPTPAEIPRAIDSMKGLVRAFQSGRLAQLTVKDALRNGLVATEVLMWFYIGEIIGKGGIIGYNV
SIO_010081: ATP5MG
subclass of: SO_0000673
so part of: ATP5MG
location: complement(join(263962..264060,264637..264797,265006..265069))
location: region:263962-265069:-1
so has part: feature:265006-265069:-1:exon
so has part: feature:264637-264797:-1:exon
so has part: feature:263962-264060:-1:exon

XP_039420701.1
type: Protein
SIO_000068: ncbiprotein

position:263962:-1
position: 263962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:265069:-1
position: 265069
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265006-265069:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:264637-264797:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:263962-264060:-1:exon

UBE4A
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: UBE4A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(265314..275898)
location: region:265314-275898:-1
so has part: feature:265314-275898:-1:exon
subclass of: SO_0000010

104692050
type: Gene
SIO_000068: ncbigene

position:265314:-1
position: 265314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275898:-1
position: 275898
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:265314-275898:-1:exon

UBE4A
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: UBE4A
product: ubiquitination factor E4A
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564764.1
SIO_010081: UBE4A
subclass of: SO_0000673
so part of: UBE4A
location: complement(join(265314..265981,266127..266284,266493..266640,266849..267029,267170..267344,268034..268147,268274..268374,268460..268647,269646..269778,270353..270660,271628..271754,272022..272355,273196..273387,273603..273805,273972..274131,274249..274401,274982..275094,275281..275457,275569..275898))
location: region:265314-275898:-1
so has part: feature:275569-275898:-1:exon
so has part: feature:275281-275457:-1:exon
so has part: feature:274982-275094:-1:exon
so has part: feature:274249-274401:-1:exon
so has part: feature:273972-274131:-1:exon
so has part: feature:273603-273805:-1:exon
so has part: feature:273196-273387:-1:exon
so has part: feature:272022-272355:-1:exon
so has part: feature:271628-271754:-1:exon
so has part: feature:270353-270660:-1:exon
so has part: feature:269646-269778:-1:exon
so has part: feature:268460-268647:-1:exon
so has part: feature:268274-268374:-1:exon
so has part: feature:268034-268147:-1:exon
so has part: feature:267170-267344:-1:exon
so has part: feature:266849-267029:-1:exon
so has part: feature:266493-266640:-1:exon
so has part: feature:266127-266284:-1:exon
so has part: feature:265314-265981:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:275569-275898:-1:exon

position:275569:-1
position: 275569
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:275281-275457:-1:exon

position:275281:-1
position: 275281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275457:-1
position: 275457
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:274982-275094:-1:exon

position:274982:-1
position: 274982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275094:-1
position: 275094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:274249-274401:-1:exon

position:274249:-1
position: 274249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274401:-1
position: 274401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:273972-274131:-1:exon

position:273972:-1
position: 273972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:274131:-1
position: 274131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:273603-273805:-1:exon

position:273603:-1
position: 273603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273805:-1
position: 273805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:273196-273387:-1:exon

position:273196:-1
position: 273196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:273387:-1
position: 273387
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:272022-272355:-1:exon

position:272022:-1
position: 272022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:272355:-1
position: 272355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:271628-271754:-1:exon

position:271628:-1
position: 271628
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:271754:-1
position: 271754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:270353-270660:-1:exon

position:270353:-1
position: 270353
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:270660:-1
position: 270660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:269646-269778:-1:exon

position:269646:-1
position: 269646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:269778:-1
position: 269778
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:268460-268647:-1:exon

position:268460:-1
position: 268460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268647:-1
position: 268647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:268274-268374:-1:exon

position:268274:-1
position: 268274
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268374:-1
position: 268374
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:268034-268147:-1:exon

position:268034:-1
position: 268034
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:268147:-1
position: 268147
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:267170-267344:-1:exon

position:267170:-1
position: 267170
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267344:-1
position: 267344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:266849-267029:-1:exon

position:266849:-1
position: 266849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:267029:-1
position: 267029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:266493-266640:-1:exon

position:266493:-1
position: 266493
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266640:-1
position: 266640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:266127-266284:-1:exon

position:266127:-1
position: 266127
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:266284:-1
position: 266284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:265314-265981:-1:exon

position:265981:-1
position: 265981
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

UBE4A
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: UBE4A
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin conjugation factor E4 A
translation: MTDQENNNSISSNPFAALFGSVAAAKHFAAVQKQQQLRHLTGEETSISQDDSDNSVSESLDDCDYSVAEISRSFRSQRELCEQLNINHMIQRIFLITLDNSDPSMKSGNGIPARCVYLEEMAADLDDQDWLDMDNVEQALFTRLLLPEPGSHLIHMTSASSQNLSADRDAGERQILRYLYACFRRAQEEITKVPENLLPFAVRCRNLTVSNTRTVLLTPEIYVNQNVYEQLVDLMLETLRGAQFEDMTEFLEEVIEALMMDEEVRTFGEVMVPVFDILLGRIKELDLCQILLYTYLDVLLYFTKQKDIAKVFAGYIQPKDPSNGQMYQKTLLGAVSNISCLLKTPGVVENHGYFLNPSRSSPQEIKVQESNIHQFMAQFHEKIYQMLKNLLQLSPEMKHRILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSPKLLTFNPTYCALKELNEEERRSKNVHMKGLEKETCLIPALSEQEPQSANSYNLVTENLVLTQYTLHLGFHRLHDQMVKINQSLHRLQVAWREAQQSSSPAADSLREQFERLMTIYLSTKTAMTEPQMLQNCLNLQVSMAVLLVQLAVGNHGTEPLELTFPLPEVEHSALAYVPEFFADNLGDFFIFLRRFADDILETSADSLEHILHFVTVFMGDVERMKNPHLRAKLAEVLEAVMPHLDQAQNPLVSSVFHRKRVFCSYQHAAHLAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWDTDSYRDSIKALADYASENLEAMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKVQQIEKDRGEWDSLSPEARREKESSLQMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGALKVKDFSEFDFKPQQLVSDICTIYLNLGDEENFCATVPKDGRSYSPTLFAQTVRVLKKINKPGNMIVSFSNLAERIKSLADRQQQEEETYADACDEFLDPIMSTLMSDPVILPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKKQKEEELQDTLN
SIO_010081: UBE4A
subclass of: SO_0000673
so part of: UBE4A
location: complement(join(265840..265981,266127..266284,266493..266640,266849..267029,267170..267344,268034..268147,268274..268374,268460..268647,269646..269778,270353..270660,271628..271754,272022..272355,273196..273387,273603..273805,273972..274131,274249..274401,274982..275094,275281..275457,275569..275692))
location: region:265840-275692:-1
so has part: feature:275569-275692:-1:exon
so has part: feature:275281-275457:-1:exon
so has part: feature:274982-275094:-1:exon
so has part: feature:274249-274401:-1:exon
so has part: feature:273972-274131:-1:exon
so has part: feature:273603-273805:-1:exon
so has part: feature:273196-273387:-1:exon
so has part: feature:272022-272355:-1:exon
so has part: feature:271628-271754:-1:exon
so has part: feature:270353-270660:-1:exon
so has part: feature:269646-269778:-1:exon
so has part: feature:268460-268647:-1:exon
so has part: feature:268274-268374:-1:exon
so has part: feature:268034-268147:-1:exon
so has part: feature:267170-267344:-1:exon
so has part: feature:266849-267029:-1:exon
so has part: feature:266493-266640:-1:exon
so has part: feature:266127-266284:-1:exon
so has part: feature:265840-265981:-1:exon

XP_039420698.1
type: Protein
SIO_000068: ncbiprotein

position:265840:-1
position: 265840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:275692:-1
position: 275692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:275569-275692:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:275281-275457:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:274982-275094:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:274249-274401:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:273972-274131:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:273603-273805:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:273196-273387:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:272022-272355:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:271628-271754:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:270353-270660:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:269646-269778:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:268460-268647:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:268274-268374:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:268034-268147:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:267170-267344:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:266849-267029:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:266493-266640:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:266127-266284:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:265840-265981:-1:exon

LOC104692051
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104692051
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(277050..280123)
location: region:277050-280123:-1
so has part: feature:277050-280123:-1:exon
subclass of: SO_0000010

104692051
type: Gene
SIO_000068: ncbigene

position:277050:-1
position: 277050
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:280123:-1
position: 280123
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:277050-280123:-1:exon

LOC104692051
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104692051
product: G protein-activated inward rectifier potassium channel 4-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
transcript id: XM_039564765.1
SIO_010081: LOC104692051
subclass of: SO_0000673
so part of: LOC104692051
location: complement(join(277050..277633,277853..279038,279148..279369,280043..280123))
location: region:277050-280123:-1
so has part: feature:280043-280123:-1:exon
so has part: feature:279148-279369:-1:exon
so has part: feature:277853-279038:-1:exon
so has part: feature:277050-277633:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:280043-280123:-1:exon

position:280043:-1
position: 280043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:279148-279369:-1:exon

position:279148:-1
position: 279148
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279369:-1
position: 279369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:277853-279038:-1:exon

position:277853:-1
position: 277853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279038:-1
position: 279038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:277050-277633:-1:exon

position:277633:-1
position: 277633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC104692051
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104692051
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: G protein-activated inward rectifier potassium channel 4-like
translation: MVLPYARNSGGAGGWLAPEEPRGRSNSIPPAQTPTAKHMLAYLPRPPTDTSRYGTFPQKPDLPPAPGALGEDSGQQAAATTAKRSAPMPNHPSAPRHSGFVPGEPSLLPSRGSLTTQHHRGRPSWCPPPAPQEAGARLYPLHALSVANIPNSSHGKTSARSSTIPTPEGLQSRRCKLLEEDSPMVQASKRQRQRYVTKVGKCQVNLGNIQDKKRFLSDIFTTIVDLKYRWFLFVFMMCYIITWLVFGFIYFFDAWVRGDVGHQGDPEWRACIENVDGFVSALLLSVESQRTIGYGTRMVTANCAEGVILLMAQSIVGSMIDAMMVGCMFVKISRPKKRAQTLIFSKNCVISRRDEKLCLMFRVGDLRESHMVDAKIRAKLIKSRQTAEGEFIPLEQSELNLGYDTGEDRLFLVEPQIICHVINRHSPFWDMSAESLRREQFEIIIILEGIVEATGMTCQARTSYTEDEILWGYRFEPCMSLEKGAFQVDYSRFEMTFEVQTPAASAKELHELKELEQQEHSTLSLYWDHLLQPCVLPGPSEDVLVGMSVPGSVAEGIRDEPPEQELPA
SIO_010081: LOC104692051
subclass of: SO_0000673
so part of: LOC104692051
location: complement(join(277290..277633,277853..279038,279148..279324))
location: region:277290-279324:-1
so has part: feature:279148-279324:-1:exon
so has part: feature:277853-279038:-1:exon
so has part: feature:277290-277633:-1:exon

XP_039420699.1
type: Protein
SIO_000068: ncbiprotein

position:277290:-1
position: 277290
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:279324:-1
position: 279324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:279148-279324:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:277853-279038:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:277290-277633:-1:exon

CLDN25
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CLDN25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 281415..282656
location: region:281415-282656:1
so has part: feature:281415-282656:1:exon
subclass of: SO_0000010

120411239
type: Gene
SIO_000068: ncbigene

position:281415:1
position: 281415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282656:1
position: 282656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281415-282656:1:exon

CLDN25
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CLDN25
product: claudin 25
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_039564766.1
SIO_010081: CLDN25
subclass of: SO_0000673
so part of: CLDN25
location: 281415..282656
location: region:281415-282656:1
so has part: feature:281415-282656:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:281415-282656:1:exon

CLDN25
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CLDN25
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: putative claudin-25
translation: MAGGWWAKAQVGGMLLALLGWVSSCVTTFLPLWKNLNLDLNELEVWNMGLWQVCITQEEGVVECQAHGSFLALPPELRISRLLMCLSNGLGLLGCLLAALGLEGWRTCEDKPGRKQRLLLAGGVTLGMAGITTLVPISWVAYNTVLDFWDETVPDIVPRWEFGEATFLGWFAGAFLVAGGLLLACSARSTRTATPLAPACHQAPAVRGLGGGHHLHPRNADLVI
SIO_010081: CLDN25
subclass of: SO_0000673
so part of: CLDN25
location: 281578..282252
location: region:281578-282252:1
so has part: feature:281578-282252:1:exon

XP_039420700.1
type: Protein
SIO_000068: ncbiprotein

position:281578:1
position: 281578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:282252:1
position: 282252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:281578-282252:1:exon

USP28
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: USP28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(284292..308702)
location: region:284292-308702:-1
so has part: feature:284292-308702:-1:exon
subclass of: SO_0000010

104692053
type: Gene
SIO_000068: ncbigene

position:284292:-1
position: 284292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308702:-1
position: 308702
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:284292-308702:-1:exon

USP28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: USP28
product: ubiquitin specific peptidase 28, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
transcript id: XM_039564760.1
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(284292..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,290219..290314,291242..291427,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,305150..305227,308512..308702))
location: region:284292-308702:-1
so has part: feature:308512-308702:-1:exon
so has part: feature:305150-305227:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:291242-291427:-1:exon
so has part: feature:290219-290314:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:284292-285448:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308702:-1:exon

position:308512:-1
position: 308512
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:305150-305227:-1:exon

position:305150:-1
position: 305150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:305227:-1
position: 305227
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:304751-304883:-1:exon

position:304751:-1
position: 304751
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304883:-1
position: 304883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:304136-304247:-1:exon

position:304136:-1
position: 304136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:304247:-1
position: 304247
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:303769-303940:-1:exon

position:303769:-1
position: 303769
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:303940:-1
position: 303940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:302727-302810:-1:exon

position:302727:-1
position: 302727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302810:-1
position: 302810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:302152-302289:-1:exon

position:302152:-1
position: 302152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:302289:-1
position: 302289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:301643-301716:-1:exon

position:301643:-1
position: 301643
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301716:-1
position: 301716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:301082-301158:-1:exon

position:301082:-1
position: 301082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:301158:-1
position: 301158
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:300816-300964:-1:exon

position:300816:-1
position: 300816
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:300964:-1
position: 300964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:298677-298804:-1:exon

position:298677:-1
position: 298677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:298804:-1
position: 298804
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:298409-298504:-1:exon

position:298409:-1
position: 298409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:298504:-1
position: 298504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:297861-298040:-1:exon

position:297861:-1
position: 297861
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:298040:-1
position: 298040
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:296958-297172:-1:exon

position:296958:-1
position: 296958
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:297172:-1
position: 297172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:296647-296717:-1:exon

position:296647:-1
position: 296647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:296717:-1
position: 296717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:296105-296333:-1:exon

position:296105:-1
position: 296105
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:296333:-1
position: 296333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:293377-293580:-1:exon

position:293377:-1
position: 293377
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:293580:-1
position: 293580
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:291614-291753:-1:exon

position:291614:-1
position: 291614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291753:-1
position: 291753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:291242-291427:-1:exon

position:291242:-1
position: 291242
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:291427:-1
position: 291427
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:290219-290314:-1:exon

position:290219:-1
position: 290219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:290314:-1
position: 290314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:289195-289373:-1:exon

position:289195:-1
position: 289195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289373:-1
position: 289373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:289022-289100:-1:exon

position:289022:-1
position: 289022
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:289100:-1
position: 289100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:288611-288690:-1:exon

position:288611:-1
position: 288611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:288690:-1
position: 288690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:287490-287613:-1:exon

position:287490:-1
position: 287490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287613:-1
position: 287613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:286790-286988:-1:exon

position:286790:-1
position: 286790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286988:-1
position: 286988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:284292-285448:-1:exon

position:285448:-1
position: 285448
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

USP28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: USP28
product: ubiquitin specific peptidase 28, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
transcript id: XM_039564762.1
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(284292..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,290219..290314,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,305150..305227,308512..308699))
location: region:284292-308699:-1
so has part: feature:308512-308699:-1:exon
so has part: feature:305150-305227:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:290219-290314:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:284292-285448:-1:exon

position:308699:-1
position: 308699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308699:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305150-305227:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:290219-290314:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:284292-285448:-1:exon

USP28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: USP28
product: ubiquitin specific peptidase 28, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
transcript id: XM_039564763.1
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(284292..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,305150..305227,308512..308696))
location: region:284292-308696:-1
so has part: feature:308512-308696:-1:exon
so has part: feature:305150-305227:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:284292-285448:-1:exon

position:308696:-1
position: 308696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308696:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305150-305227:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:284292-285448:-1:exon

USP28
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: USP28
product: ubiquitin specific peptidase 28, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_039564761.1
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(284292..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,290219..290314,291242..291427,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,308512..308612))
location: region:284292-308612:-1
so has part: feature:308512-308612:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:291242-291427:-1:exon
so has part: feature:290219-290314:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:284292-285448:-1:exon

position:308612:-1
position: 308612
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308612:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291242-291427:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:290219-290314:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:284292-285448:-1:exon

USP28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: USP28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 28 isoform X4
translation: MSTAGPTARHGWTRPRRGRRARNRSGRACALCGDGAAAGGLMTAELWARGGGGEDCQVLLNQMKEITGIQDSAFLLAALKAADGDFMEAVTFLTEDPAPEPVQDPAAAEPSAWEGSAVGKQLPQDVSAAPAPHNQDNLRTANTVRSLESPKAPAAERDAAERPQDTHSAENKYRSKRKRCEMLSLWVESPKQNDWRRAGDWPVGMKNIGNTCWFSAVIQSLFQLPEFRRLVLGYSLPQNVLESCRHTGKRNIAFMQELQCLFALMLGTWRKFVDPSAALELLRDVFRSAEQPQQDVSEFTHKLLDWLEDAFQLTVNATSPGDKSENPMVQLFYGTFLTEGVHEGNTFSKIETFGQYPLQVNGYQNLNECLEGAMVEGEMDEATTSQSVKYGQERWFTKLPPVLTFELSRFKFNQSLGQPEKIHTKLEFPQTIYMDRYLYCNKDLIQMKREEMKRSKEKMVTLQQKLERYMEYGSGPARFPLPDMLQYVLEFIVTKPAVAVSSAQSSQTTLPHSPAKPHVLDVLSQPNGIQERTDIRTEDEAFLVANSLLQQNSSMELQPPVSPAELSERPAPHVVSEEEMKLVQTCLQRWRNEIEQDVQDLKESIARINLSIEQMYCDPLLQQVPYRLHAVLVHEGQANAGHYWAFIYDQPRKRWLKYNDIWVTESSWEELERESFGGLRSASAYCLMYISEQVSHVGADEDEGPEARQFQKEVEALSPELRHYIQEDNWRLEQEAEEWEEEQSCKIPQMEPSPTSELQDLSSESGPEQSSVCEQSVRSLSSEHARIAKEQTAKAIANTADAYEKNGVEAALCEAFHEEYSRLYLLSKETPTPQNDARLQHVLIYFLQNNAPQQVVERTLLEQFADKNLSYDERSISIMKVARAKLSEIGPDDVDMEEYKRWHEDYSLFRKVSIYLLTGLELYQNRKYQESLTYLVYAYQSNTKLLLKGTNRGVSESLIALYRRKCLLKLNEVAASLFVSCEEAHVSEGVNILNELIIPCMHLMNNFEISKEDLDAIEVMRNRWCSYLGREDMDAKLQMKLGELLPRLLDGSTEVIVLKEPPKIRPNSPYDLCSRFAAVMESIHGASTVTVK
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(285273..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,305150..305227,308512..308673))
location: region:285273-308673:-1
so has part: feature:308512-308673:-1:exon
so has part: feature:305150-305227:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:285273-285448:-1:exon

XP_039420697.1
type: Protein
SIO_000068: ncbiprotein

position:285273:-1
position: 285273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308673:-1
position: 308673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308673:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305150-305227:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:285273-285448:-1:exon

USP28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: USP28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 28 isoform X3
translation: MSTAGPTARHGWTRPRRGRRARNRSGRACALCGDGAAAGGLMTAELWARGGGGEDCQVLLNQMKEITGIQDSAFLLAALKAADGDFMEAVTFLTEDPAPEPVQDPAAAEPSAWEGSAVGKQLPQDVSAAPAPHNQDNLRTANTVRSLESPKAPAAERDAAERPQDTHSAENKYRSKRKRCEMLSLWVESPKQNDWRRAGDWPVGMKNIGNTCWFSAVIQSLFQLPEFRRLVLGYSLPQNVLESCRHTGKRNIAFMQELQCLFALMLGTWRKFVDPSAALELLRDVFRSAEQPQQDVSEFTHKLLDWLEDAFQLTVNATSPGDKSENPMVQLFYGTFLTEGVHEGNTFSKIETFGQYPLQVNGYQNLNECLEGAMVEGEMDEATTSQSVKYGQERWFTKLPPVLTFELSRFKFNQSLGQPEKIHTKLEFPQTIYMDRYLYCNKDLIQMKREEMKRSKEKMVTLQQKLERYMEYGSGPARFPLPDMLQYVLEFIVTKPAVAVSSAQSSQTTLPHSPAKPHVLDVLSQPNGIQERTDIRTEDEAFLVANSLLQQNSSMELQPPVSPAELSERPAPHVVSEEEMKLVQTCLQRWRNEIEQDVQDLKESIARINLSIEQMYCDPLLQQVPYRLHAVLVHEGQANAGHYWAFIYDQPRKRWLKYNDIWVTESSWEELERESFGGLRSASAYCLMYISEQVSHVGADEDEGPEARQFQKEVEALSPELRHYIQEDNWRLEQEAEEWEEEQSCKIPQMEPSPTSELQDLSSESGPEQSSVCEQSVRSLSSEHARIAKEQTAKAIANTADAYEKNGVEAALCEVMLSPAMQGVILAIAKARQTFDRDGSEAGLVKAFHEEYSRLYLLSKETPTPQNDARLQHVLIYFLQNNAPQQVVERTLLEQFADKNLSYDERSISIMKVARAKLSEIGPDDVDMEEYKRWHEDYSLFRKVSIYLLTGLELYQNRKYQESLTYLVYAYQSNTKLLLKGTNRGVSESLIALYRRKCLLKLNEVAASLFVSCEEAHVSEGVNILNELIIPCMHLMNNFEISKEDLDAIEVMRNRWCSYLGREDMDAKLQMKLGELLPRLLDGSTEVIVLKEPPKIRPNSPYDLCSRFAAVMESIHGASTVTVK
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(285273..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,290219..290314,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,305150..305227,308512..308673))
location: region:285273-308673:-1
so has part: feature:308512-308673:-1:exon
so has part: feature:305150-305227:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:290219-290314:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:285273-285448:-1:exon

XP_039420696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308673:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305150-305227:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:290219-290314:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:285273-285448:-1:exon

USP28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: USP28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 28 isoform X1
translation: MSTAGPTARHGWTRPRRGRRARNRSGRACALCGDGAAAGGLMTAELWARGGGGEDCQVLLNQMKEITGIQDSAFLLAALKAADGDFMEAVTFLTEDPAPEPVQDPAAAEPSAWEGSAVGKQLPQDVSAAPAPHNQDNLRTANTVRSLESPKAPAAERDAAERPQDTHSAENKYRSKRKRCEMLSLWVESPKQNDWRRAGDWPVGMKNIGNTCWFSAVIQSLFQLPEFRRLVLGYSLPQNVLESCRHTGKRNIAFMQELQCLFALMLGTWRKFVDPSAALELLRDVFRSAEQPQQDVSEFTHKLLDWLEDAFQLTVNATSPGDKSENPMVQLFYGTFLTEGVHEGNTFSKIETFGQYPLQVNGYQNLNECLEGAMVEGEMDEATTSQSVKYGQERWFTKLPPVLTFELSRFKFNQSLGQPEKIHTKLEFPQTIYMDRYLYCNKDLIQMKREEMKRSKEKMVTLQQKLERYMEYGSGPARFPLPDMLQYVLEFIVTKPAVAVSSAQSSQTTLPHSPAKPHVLDVLSQPNGIQERTDIRTEDEAFLVANSLLQQNSSMELQPPVSPAELSERPAPHVVSEEEMKLVQTCLQRWRNEIEQDVQDLKESIARINLSIEQMYCDPLLQQVPYRLHAVLVHEGQANAGHYWAFIYDQPRKRWLKYNDIWVTESSWEELERESFGGLRSASAYCLMYISEQVSHVGADEDEGPEARQFQKEVEALSPELRHYIQEDNWRLEQEAEEWEEEQSCKIPQMEPSPTSELQDLSSESGPEQSSVCEQSVRSLSSEHARIAKEQTAKAIANTADAYEKNGVEAALCERKEVEPLKAHPGEASPTVQAEQPQDTQEAEAAAQTSSQVSEVEIPSVGKIPVRSDADGYNEEVMLSPAMQGVILAIAKARQTFDRDGSEAGLVKAFHEEYSRLYLLSKETPTPQNDARLQHVLIYFLQNNAPQQVVERTLLEQFADKNLSYDERSISIMKVARAKLSEIGPDDVDMEEYKRWHEDYSLFRKVSIYLLTGLELYQNRKYQESLTYLVYAYQSNTKLLLKGTNRGVSESLIALYRRKCLLKLNEVAASLFVSCEEAHVSEGVNILNELIIPCMHLMNNFEISKEDLDAIEVMRNRWCSYLGREDMDAKLQMKLGELLPRLLDGSTEVIVLKEPPKIRPNSPYDLCSRFAAVMESIHGASTVTVK
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(285273..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,290219..290314,291242..291427,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,305150..305227,308512..308673))
location: region:285273-308673:-1
so has part: feature:308512-308673:-1:exon
so has part: feature:305150-305227:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:291242-291427:-1:exon
so has part: feature:290219-290314:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:285273-285448:-1:exon

XP_039420694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308673:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:305150-305227:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:291242-291427:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:290219-290314:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:285273-285448:-1:exon

USP28
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: USP28
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ubiquitin carboxyl-terminal hydrolase 28 isoform X2
translation: MTAELWARGGGGEAADGDFMEAVTFLTEDPAPEPVQDPAAAEPSAWEGSAVGKQLPQDVSAAPAPHNQDNLRTANTVRSLESPKAPAAERDAAERPQDTHSAENKYRSKRKRCEMLSLWVESPKQNDWRRAGDWPVGMKNIGNTCWFSAVIQSLFQLPEFRRLVLGYSLPQNVLESCRHTGKRNIAFMQELQCLFALMLGTWRKFVDPSAALELLRDVFRSAEQPQQDVSEFTHKLLDWLEDAFQLTVNATSPGDKSENPMVQLFYGTFLTEGVHEGNTFSKIETFGQYPLQVNGYQNLNECLEGAMVEGEMDEATTSQSVKYGQERWFTKLPPVLTFELSRFKFNQSLGQPEKIHTKLEFPQTIYMDRYLYCNKDLIQMKREEMKRSKEKMVTLQQKLERYMEYGSGPARFPLPDMLQYVLEFIVTKPAVAVSSAQSSQTTLPHSPAKPHVLDVLSQPNGIQERTDIRTEDEAFLVANSLLQQNSSMELQPPVSPAELSERPAPHVVSEEEMKLVQTCLQRWRNEIEQDVQDLKESIARINLSIEQMYCDPLLQQVPYRLHAVLVHEGQANAGHYWAFIYDQPRKRWLKYNDIWVTESSWEELERESFGGLRSASAYCLMYISEQVSHVGADEDEGPEARQFQKEVEALSPELRHYIQEDNWRLEQEAEEWEEEQSCKIPQMEPSPTSELQDLSSESGPEQSSVCEQSVRSLSSEHARIAKEQTAKAIANTADAYEKNGVEAALCERKEVEPLKAHPGEASPTVQAEQPQDTQEAEAAAQTSSQVSEVEIPSVGKIPVRSDADGYNEEVMLSPAMQGVILAIAKARQTFDRDGSEAGLVKAFHEEYSRLYLLSKETPTPQNDARLQHVLIYFLQNNAPQQVVERTLLEQFADKNLSYDERSISIMKVARAKLSEIGPDDVDMEEYKRWHEDYSLFRKVSIYLLTGLELYQNRKYQESLTYLVYAYQSNTKLLLKGTNRGVSESLIALYRRKCLLKLNEVAASLFVSCEEAHVSEGVNILNELIIPCMHLMNNFEISKEDLDAIEVMRNRWCSYLGREDMDAKLQMKLGELLPRLLDGSTEVIVLKEPPKIRPNSPYDLCSRFAAVMESIHGASTVTVK
SIO_010081: USP28
subclass of: SO_0000673
so part of: USP28
location: complement(join(285273..285448,286790..286988,287490..287613,288611..288690,289022..289100,289195..289373,290219..290314,291242..291427,291614..291753,293377..293580,296105..296333,296647..296717,296958..297172,297861..298040,298409..298504,298677..298804,300816..300964,301082..301158,301643..301716,302152..302289,302727..302810,303769..303940,304136..304247,304751..304883,308512..308550))
location: region:285273-308550:-1
so has part: feature:308512-308550:-1:exon
so has part: feature:304751-304883:-1:exon
so has part: feature:304136-304247:-1:exon
so has part: feature:303769-303940:-1:exon
so has part: feature:302727-302810:-1:exon
so has part: feature:302152-302289:-1:exon
so has part: feature:301643-301716:-1:exon
so has part: feature:301082-301158:-1:exon
so has part: feature:300816-300964:-1:exon
so has part: feature:298677-298804:-1:exon
so has part: feature:298409-298504:-1:exon
so has part: feature:297861-298040:-1:exon
so has part: feature:296958-297172:-1:exon
so has part: feature:296647-296717:-1:exon
so has part: feature:296105-296333:-1:exon
so has part: feature:293377-293580:-1:exon
so has part: feature:291614-291753:-1:exon
so has part: feature:291242-291427:-1:exon
so has part: feature:290219-290314:-1:exon
so has part: feature:289195-289373:-1:exon
so has part: feature:289022-289100:-1:exon
so has part: feature:288611-288690:-1:exon
so has part: feature:287490-287613:-1:exon
so has part: feature:286790-286988:-1:exon
so has part: feature:285273-285448:-1:exon

XP_039420695.1
type: Protein
SIO_000068: ncbiprotein

position:308550:-1
position: 308550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:308512-308550:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:304751-304883:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:304136-304247:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:303769-303940:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:302727-302810:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:302152-302289:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:301643-301716:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:301082-301158:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:300816-300964:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:298677-298804:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:298409-298504:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:297861-298040:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:296958-297172:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:296647-296717:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:296105-296333:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:293377-293580:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:291614-291753:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:291242-291427:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:290219-290314:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:289195-289373:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:289022-289100:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:288611-288690:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:287490-287613:-1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:286790-286988:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:285273-285448:-1:exon

LOC104692054
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC104692054
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 313619..320521
location: region:313619-320521:1
so has part: feature:313619-320521:1:exon
subclass of: SO_0000010

104692054
type: Gene
SIO_000068: ncbigene

position:313619:1
position: 313619
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:320521:1
position: 320521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313619-320521:1:exon

LOC104692054
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104692054
product: 5-hydroxytryptamine receptor 3A-like, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
transcript id: XM_010403783.4
SIO_010081: LOC104692054
subclass of: SO_0000673
so part of: LOC104692054
location: join(313619..313788,315767..315933,316073..316117,316462..316571,317152..317321,317542..317702,317943..318153,318303..318536,318710..320521)
location: region:313619-320521:1
so has part: feature:313619-313788:1:exon
so has part: feature:315767-315933:1:exon
so has part: feature:316073-316117:1:exon
so has part: feature:316462-316571:1:exon
so has part: feature:317152-317321:1:exon
so has part: feature:317542-317702:1:exon
so has part: feature:317943-318153:1:exon
so has part: feature:318303-318536:1:exon
so has part: feature:318710-320521:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313619-313788:1:exon

position:313788:1
position: 313788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:315767-315933:1:exon

position:315767:1
position: 315767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:315933:1
position: 315933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:316073-316117:1:exon

position:316073:1
position: 316073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316117:1
position: 316117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:316462-316571:1:exon

position:316462:1
position: 316462
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:316571:1
position: 316571
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:317152-317321:1:exon

position:317152:1
position: 317152
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317321:1
position: 317321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:317542-317702:1:exon

position:317542:1
position: 317542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:317702:1
position: 317702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:317943-318153:1:exon

position:317943:1
position: 317943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318153:1
position: 318153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:318303-318536:1:exon

position:318303:1
position: 318303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:318536:1
position: 318536
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:318710-320521:1:exon

position:318710:1
position: 318710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC104692054
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC104692054
product: 5-hydroxytryptamine receptor 3A-like, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
transcript id: XM_010403784.4
SIO_010081: LOC104692054
subclass of: SO_0000673
so part of: LOC104692054
location: join(313619..313788,315770..315933,316073..316117,316462..316571,317152..317321,317542..317702,317943..318153,318303..318536,318710..320521)
location: region:313619-320521:1
so has part: feature:313619-313788:1:exon
so has part: feature:315770-315933:1:exon
so has part: feature:316073-316117:1:exon
so has part: feature:316462-316571:1:exon
so has part: feature:317152-317321:1:exon
so has part: feature:317542-317702:1:exon
so has part: feature:317943-318153:1:exon
so has part: feature:318303-318536:1:exon
so has part: feature:318710-320521:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:313619-313788:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:315770-315933:1:exon

position:315770:1
position: 315770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:316073-316117:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:316462-316571:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:317152-317321:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:317542-317702:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:317943-318153:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:318303-318536:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:318710-320521:1:exon

LOC104692054
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104692054
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5-hydroxytryptamine receptor 3A-like isoform X1
translation: MVPTALGALLALLPLASTLQSPAGTQHRGRMPEPSEPTLRRLSHYLLAHYQKGSRPVRDWRTTTNVAIDLMVYAILSVDEKNQVLTTYIWYRQHWTDEFLRWDPARFDNLTQISLPVESIWVPDILINEFVDVGKSPHVPYVYVSHHGEVQNLKPIQVMTACSLDIYSFPFDVQNCSLTFTSWLHHIRDINLSLWRQPELVKFDRSVFMNQGEWELLYVLSRFQEFSVKSSDSYAEMKFYVVIRRRPLFYTVSLLLPSIFLMVMDIVGFYLPPHSGERVSFKITLLLGYSVFLIIVSDTLPATAVGTPLIGIYFVVCMALLVISLTETILIVRLVHKQDLQPHVPEWVKHLLLERATILLCVWDRKKFSQSRTQSLDISRQVENNDSTAKLTPYGCEDPRECGSVGGTRSTLAFAGRTEGLAALQEVLRETTAIRQLLEKREEFRDVAREWLQVGYVLDVLLFRVYLAAVLAYSITLGTLWSVWRDA
SIO_010081: LOC104692054
subclass of: SO_0000673
so part of: LOC104692054
location: join(313722..313788,315767..315933,316073..316117,316462..316571,317152..317321,317542..317702,317943..318153,318303..318536,318710..319008)
location: region:313722-319008:1
so has part: feature:313722-313788:1:exon
so has part: feature:315767-315933:1:exon
so has part: feature:316073-316117:1:exon
so has part: feature:316462-316571:1:exon
so has part: feature:317152-317321:1:exon
so has part: feature:317542-317702:1:exon
so has part: feature:317943-318153:1:exon
so has part: feature:318303-318536:1:exon
so has part: feature:318710-319008:1:exon

XP_010402085.1
type: Protein
SIO_000068: ncbiprotein

position:313722:1
position: 313722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:319008:1
position: 319008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313722-313788:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:315767-315933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316073-316117:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:316462-316571:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:317152-317321:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:317542-317702:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:317943-318153:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:318303-318536:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:318710-319008:1:exon

LOC104692054
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC104692054
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: 5-hydroxytryptamine receptor 3A-like isoform X2
translation: MVPTALGALLALLPLASTLQSPGTQHRGRMPEPSEPTLRRLSHYLLAHYQKGSRPVRDWRTTTNVAIDLMVYAILSVDEKNQVLTTYIWYRQHWTDEFLRWDPARFDNLTQISLPVESIWVPDILINEFVDVGKSPHVPYVYVSHHGEVQNLKPIQVMTACSLDIYSFPFDVQNCSLTFTSWLHHIRDINLSLWRQPELVKFDRSVFMNQGEWELLYVLSRFQEFSVKSSDSYAEMKFYVVIRRRPLFYTVSLLLPSIFLMVMDIVGFYLPPHSGERVSFKITLLLGYSVFLIIVSDTLPATAVGTPLIGIYFVVCMALLVISLTETILIVRLVHKQDLQPHVPEWVKHLLLERATILLCVWDRKKFSQSRTQSLDISRQVENNDSTAKLTPYGCEDPRECGSVGGTRSTLAFAGRTEGLAALQEVLRETTAIRQLLEKREEFRDVAREWLQVGYVLDVLLFRVYLAAVLAYSITLGTLWSVWRDA
SIO_010081: LOC104692054
subclass of: SO_0000673
so part of: LOC104692054
location: join(313722..313788,315770..315933,316073..316117,316462..316571,317152..317321,317542..317702,317943..318153,318303..318536,318710..319008)
location: region:313722-319008:1
so has part: feature:313722-313788:1:exon
so has part: feature:315770-315933:1:exon
so has part: feature:316073-316117:1:exon
so has part: feature:316462-316571:1:exon
so has part: feature:317152-317321:1:exon
so has part: feature:317542-317702:1:exon
so has part: feature:317943-318153:1:exon
so has part: feature:318303-318536:1:exon
so has part: feature:318710-319008:1:exon

XP_010402086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:313722-313788:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:315770-315933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:316073-316117:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:316462-316571:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:317152-317321:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:317542-317702:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:317943-318153:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:318303-318536:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:318710-319008:1:exon

ZBTB16
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ZBTB16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(321577..376550)
location: region:321577-376550:-1
so has part: feature:321577-376550:-1:exon
subclass of: SO_0000010

104692166
type: Gene
SIO_000068: ncbigene

position:321577:-1
position: 321577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:376550:-1
position: 376550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:321577-376550:-1:exon

ZBTB16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ZBTB16
product: zinc finger and BTB domain containing 16, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
transcript id: XM_039564897.1
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(321577..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375767,376452..376550))
location: region:321577-376550:-1
so has part: feature:376452-376550:-1:exon
so has part: feature:374426-375767:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:321577-324488:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:376452-376550:-1:exon

position:376452:-1
position: 376452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:374426-375767:-1:exon

position:374426:-1
position: 374426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375767:-1
position: 375767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:349013-349110:-1:exon

position:349013:-1
position: 349013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:349110:-1
position: 349110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:340835-340921:-1:exon

position:340835:-1
position: 340835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:340921:-1
position: 340921
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:327059-327229:-1:exon

position:327059:-1
position: 327059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:327229:-1
position: 327229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:324766-324933:-1:exon

position:324766:-1
position: 324766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324933:-1
position: 324933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:321577-324488:-1:exon

position:324488:-1
position: 324488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZBTB16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ZBTB16
product: zinc finger and BTB domain containing 16, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_039564898.1
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(321577..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375763,376452..376549))
location: region:321577-376549:-1
so has part: feature:376452-376549:-1:exon
so has part: feature:374426-375763:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:321577-324488:-1:exon

position:376549:-1
position: 376549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376452-376549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374426-375763:-1:exon

position:375763:-1
position: 375763
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:321577-324488:-1:exon

ZBTB16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ZBTB16
product: zinc finger and BTB domain containing 16, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 17 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
transcript id: XM_039564895.1
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(321577..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375763,376228..376330))
location: region:321577-376330:-1
so has part: feature:376228-376330:-1:exon
so has part: feature:374426-375763:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:321577-324488:-1:exon

position:376330:-1
position: 376330
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376228-376330:-1:exon

position:376228:-1
position: 376228
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:374426-375763:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:321577-324488:-1:exon

ZBTB16
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ZBTB16
product: zinc finger and BTB domain containing 16, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_039564896.1
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(321577..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375767,376228..376309))
location: region:321577-376309:-1
so has part: feature:376228-376309:-1:exon
so has part: feature:374426-375767:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:321577-324488:-1:exon

position:376309:-1
position: 376309
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:376228-376309:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:374426-375767:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:321577-324488:-1:exon

ZBTB16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ZBTB16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 16
translation: MDLTKMGLIQLQNPCHPTGLLHKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKVEDLDDLLYAAEILEIEYLEEQCLKILETIQASEENDTEVTMADGGATATTEEEEERKSRYIKGLFISRPTGEESGYAGMASQSLPAATAEQSPSASASYCSLSSMSPTKAAVDSLMTIGQSLLQGALPPSAPEDSRPATTCRPPGLAEVKTEAMQVDEASSHDSPRTAEPGASSGEKPDEKGKEGPGTPTRSSVITSARELHYTREEGAEPAPEPGQGLPLGPEPSGTAPGEKPLGIYSLLPNHKTEPVLGVPPTVASALHVQPALAVSMDFSAYGGLLPQGFIQRELFSKLGELAAGMKTESRALGEQCSVCGAELPDNETLEQHRKLHSGMKTYGCELCGKRFLDSLRLRMHLLAHSAGAKALVCDQCGAQFSKEDALETHRQTHTGTDMAVFCLLCGKRFQTQSALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEFCGSCFRDESTLKGHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSAMIKHLRTHNGASPYQCTICLEYCPSLSAMQKHMKGHKPEEIPTDWRIEKTYLYLCYV
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(324259..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375693))
location: region:324259-375693:-1
so has part: feature:374426-375693:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:324259-324488:-1:exon

XP_039420829.1
type: Protein
SIO_000068: ncbiprotein

position:324259:-1
position: 324259
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:375693:-1
position: 375693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:374426-375693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324259-324488:-1:exon

ZBTB16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ZBTB16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 16
translation: MDLTKMGLIQLQNPCHPTGLLHKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKVEDLDDLLYAAEILEIEYLEEQCLKILETIQASEENDTEVTMADGGATATTEEEEERKSRYIKGLFISRPTGEESGYAGMASQSLPAATAEQSPSASASYCSLSSMSPTKAAVDSLMTIGQSLLQGALPPSAPEDSRPATTCRPPGLAEVKTEAMQVDEASSHDSPRTAEPGASSGEKPDEKGKEGPGTPTRSSVITSARELHYTREEGAEPAPEPGQGLPLGPEPSGTAPGEKPLGIYSLLPNHKTEPVLGVPPTVASALHVQPALAVSMDFSAYGGLLPQGFIQRELFSKLGELAAGMKTESRALGEQCSVCGAELPDNETLEQHRKLHSGMKTYGCELCGKRFLDSLRLRMHLLAHSAGAKALVCDQCGAQFSKEDALETHRQTHTGTDMAVFCLLCGKRFQTQSALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEFCGSCFRDESTLKGHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSAMIKHLRTHNGASPYQCTICLEYCPSLSAMQKHMKGHKPEEIPTDWRIEKTYLYLCYV
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(324259..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375693))
location: region:324259-375693:-1
so has part: feature:374426-375693:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:324259-324488:-1:exon

XP_039420830.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:374426-375693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324259-324488:-1:exon

ZBTB16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ZBTB16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 16
translation: MDLTKMGLIQLQNPCHPTGLLHKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKVEDLDDLLYAAEILEIEYLEEQCLKILETIQASEENDTEVTMADGGATATTEEEEERKSRYIKGLFISRPTGEESGYAGMASQSLPAATAEQSPSASASYCSLSSMSPTKAAVDSLMTIGQSLLQGALPPSAPEDSRPATTCRPPGLAEVKTEAMQVDEASSHDSPRTAEPGASSGEKPDEKGKEGPGTPTRSSVITSARELHYTREEGAEPAPEPGQGLPLGPEPSGTAPGEKPLGIYSLLPNHKTEPVLGVPPTVASALHVQPALAVSMDFSAYGGLLPQGFIQRELFSKLGELAAGMKTESRALGEQCSVCGAELPDNETLEQHRKLHSGMKTYGCELCGKRFLDSLRLRMHLLAHSAGAKALVCDQCGAQFSKEDALETHRQTHTGTDMAVFCLLCGKRFQTQSALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEFCGSCFRDESTLKGHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSAMIKHLRTHNGASPYQCTICLEYCPSLSAMQKHMKGHKPEEIPTDWRIEKTYLYLCYV
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(324259..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375693))
location: region:324259-375693:-1
so has part: feature:374426-375693:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:324259-324488:-1:exon

XP_039420831.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:374426-375693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324259-324488:-1:exon

ZBTB16
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ZBTB16
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger and BTB domain-containing protein 16
translation: MDLTKMGLIQLQNPCHPTGLLHKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKVEDLDDLLYAAEILEIEYLEEQCLKILETIQASEENDTEVTMADGGATATTEEEEERKSRYIKGLFISRPTGEESGYAGMASQSLPAATAEQSPSASASYCSLSSMSPTKAAVDSLMTIGQSLLQGALPPSAPEDSRPATTCRPPGLAEVKTEAMQVDEASSHDSPRTAEPGASSGEKPDEKGKEGPGTPTRSSVITSARELHYTREEGAEPAPEPGQGLPLGPEPSGTAPGEKPLGIYSLLPNHKTEPVLGVPPTVASALHVQPALAVSMDFSAYGGLLPQGFIQRELFSKLGELAAGMKTESRALGEQCSVCGAELPDNETLEQHRKLHSGMKTYGCELCGKRFLDSLRLRMHLLAHSAGAKALVCDQCGAQFSKEDALETHRQTHTGTDMAVFCLLCGKRFQTQSALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEFCGSCFRDESTLKGHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSAMIKHLRTHNGASPYQCTICLEYCPSLSAMQKHMKGHKPEEIPTDWRIEKTYLYLCYV
SIO_010081: ZBTB16
subclass of: SO_0000673
so part of: ZBTB16
location: complement(join(324259..324488,324766..324933,327059..327229,340835..340921,349013..349110,374426..375693))
location: region:324259-375693:-1
so has part: feature:374426-375693:-1:exon
so has part: feature:349013-349110:-1:exon
so has part: feature:340835-340921:-1:exon
so has part: feature:327059-327229:-1:exon
so has part: feature:324766-324933:-1:exon
so has part: feature:324259-324488:-1:exon

XP_039420832.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:374426-375693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:349013-349110:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:340835-340921:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:327059-327229:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:324766-324933:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:324259-324488:-1:exon

LOC120411235
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411235
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(393747..395212)
location: region:393747-395212:-1
so has part: feature:393747-395212:-1:exon
subclass of: SO_0000011

120411235
type: Gene
SIO_000068: ncbigene

position:393747:-1
position: 393747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:395212:-1
position: 395212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:393747-395212:-1:exon

LOC120411235
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411235
product: uncharacterized LOC120411235
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XR_005603616.1
SIO_010081: LOC120411235
subclass of: SO_0000673
so part of: LOC120411235
location: complement(join(393747..394143,394912..395212))
location: region:393747-395212:-1
so has part: feature:394912-395212:-1:exon
so has part: feature:393747-394143:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:394912-395212:-1:exon

position:394912:-1
position: 394912
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:393747-394143:-1:exon

position:394143:-1
position: 394143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

RBM7
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RBM7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 396687..398968
location: region:396687-398968:1
so has part: feature:396687-398968:1:exon
subclass of: SO_0000010

104692168
type: Gene
SIO_000068: ncbigene

position:396687:1
position: 396687
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398968:1
position: 398968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396687-398968:1:exon

RBM7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RBM7
product: RNA binding motif protein 7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565047.1
SIO_010081: RBM7
subclass of: SO_0000673
so part of: RBM7
location: join(396687..396844,397021..397183,397740..397842,398033..398099,398415..398968)
location: region:396687-398968:1
so has part: feature:396687-396844:1:exon
so has part: feature:397021-397183:1:exon
so has part: feature:397740-397842:1:exon
so has part: feature:398033-398099:1:exon
so has part: feature:398415-398968:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:396687-396844:1:exon

position:396844:1
position: 396844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:397021-397183:1:exon

position:397021:1
position: 397021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397183:1
position: 397183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:397740-397842:1:exon

position:397740:1
position: 397740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:397842:1
position: 397842
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:398033-398099:1:exon

position:398033:1
position: 398033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398099:1
position: 398099
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:398415-398968:1:exon

position:398415:1
position: 398415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RBM7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RBM7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RNA-binding protein 7
translation: MGAAAAEANRTLFVGNLDPKVTEELIFELFHQAGPVITVKIPKDRDGRPKQFAFVNFKHEESVPYGLRLLNGIKLYGRPMRIQFRSGSSHAAQDINPSCPPLTAAGTSPPGMPHPASNCSRYERVPDGMAAPGFPSSLQRQAVMNSAARQQPQFGGKYEQPGFAPPGYPHSFHAPPGSPGPRRSEGPALRKGRLGAHPYPPDTRHFGRERFGERGPDYGRGKRDEYGFDERGHDAEHHYRGGREEHYDDRHRDGWSYDYRRESYREAKWHSSRH
SIO_010081: RBM7
subclass of: SO_0000673
so part of: RBM7
location: join(396749..396844,397021..397183,397740..397842,398033..398099,398415..398810)
location: region:396749-398810:1
so has part: feature:396749-396844:1:exon
so has part: feature:397021-397183:1:exon
so has part: feature:397740-397842:1:exon
so has part: feature:398033-398099:1:exon
so has part: feature:398415-398810:1:exon

XP_039420981.1
type: Protein
SIO_000068: ncbiprotein

position:396749:1
position: 396749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:398810:1
position: 398810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:396749-396844:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:397021-397183:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:397740-397842:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:398033-398099:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:398415-398810:1:exon

REXO2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: REXO2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 399677..404595
location: region:399677-404595:1
so has part: feature:399677-404595:1:exon
subclass of: SO_0000010

104692055
type: Gene
SIO_000068: ncbigene

position:399677:1
position: 399677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404595:1
position: 404595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399677-404595:1:exon

REXO2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: REXO2
product: RNA exonuclease 2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 10 ESTs, 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039565037.1
SIO_010081: REXO2
subclass of: SO_0000673
so part of: REXO2
location: join(399677..399809,399914..399997,400291..400368,402238..402349,402887..402995,403222..403275,404172..404595)
location: region:399677-404595:1
so has part: feature:399677-399809:1:exon
so has part: feature:399914-399997:1:exon
so has part: feature:400291-400368:1:exon
so has part: feature:402238-402349:1:exon
so has part: feature:402887-402995:1:exon
so has part: feature:403222-403275:1:exon
so has part: feature:404172-404595:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:399677-399809:1:exon

position:399809:1
position: 399809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:399914-399997:1:exon

position:399914:1
position: 399914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:399997:1
position: 399997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:400291-400368:1:exon

position:400291:1
position: 400291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:400368:1
position: 400368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:402238-402349:1:exon

position:402238:1
position: 402238
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402349:1
position: 402349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:402887-402995:1:exon

position:402887:1
position: 402887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:402995:1
position: 402995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:403222-403275:1:exon

position:403222:1
position: 403222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:403275:1
position: 403275
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:404172-404595:1:exon

position:404172:1
position: 404172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

REXO2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: REXO2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: oligoribonuclease, mitochondrial
translation: MLGGGRAGLGRLRICAGRLWRGRRRAAAMAGGDMGQRMVWVDLEMTGLDVEKDQILEMACLITDCDLNVLAEGPNLIINQPDELLESMSEWCKEHHGKSGLTKAVKESKISLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMRHLHYRIIDVSTVKELCRRWYPEEYEFAPKKAASHRALDDIRESIKELQFYRDHIFKRKTDEKKRKLIENGESDKAAS
SIO_010081: REXO2
subclass of: SO_0000673
so part of: REXO2
location: join(399678..399809,399914..399997,400291..400368,402238..402349,402887..402995,403222..403275,404172..404301)
location: region:399678-404301:1
so has part: feature:399678-399809:1:exon
so has part: feature:399914-399997:1:exon
so has part: feature:400291-400368:1:exon
so has part: feature:402238-402349:1:exon
so has part: feature:402887-402995:1:exon
so has part: feature:403222-403275:1:exon
so has part: feature:404172-404301:1:exon

XP_039420971.1
type: Protein
SIO_000068: ncbiprotein

position:399678:1
position: 399678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:404301:1
position: 404301
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:399678-399809:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:399914-399997:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:400291-400368:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:402238-402349:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:402887-402995:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:403222-403275:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:404172-404301:1:exon

LOC120411254
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411254
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 431656..442724
location: region:431656-442724:1
so has part: feature:431656-442724:1:exon
subclass of: SO_0000011

120411254
type: Gene
SIO_000068: ncbigene

position:431656:1
position: 431656
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:442724:1
position: 442724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431656-442724:1:exon

LOC120411254
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 932674
nc RNA class: lncRNA
gene: LOC120411254
product: uncharacterized LOC120411254
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transcript id: XR_005603637.1
SIO_010081: LOC120411254
subclass of: SO_0000673
so part of: LOC120411254
location: join(431656..432026,438684..442724)
location: region:431656-442724:1
so has part: feature:431656-432026:1:exon
so has part: feature:438684-442724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:431656-432026:1:exon

position:432026:1
position: 432026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:438684-442724:1:exon

position:438684:1
position: 438684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CADM1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(461819..597462)
location: region:461819-597462:-1
so has part: feature:461819-597462:-1:exon
subclass of: SO_0000010

104692169
type: Gene
SIO_000068: ncbigene

position:461819:-1
position: 461819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597462:-1
position: 597462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:461819-597462:-1:exon

CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X10
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 73 samples with support for all annotated introns
transcript id: XM_039564758.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:461819-463977:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597462:-1:exon

position:597336:-1
position: 597336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

position:506779:-1
position: 506779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:506925:-1
position: 506925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

position:505713:-1
position: 505713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:505865:-1
position: 505865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

position:503191:-1
position: 503191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:503328:-1
position: 503328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

position:501342:-1
position: 501342
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:501497:-1
position: 501497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

position:493502:-1
position: 493502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:493601:-1
position: 493601
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

position:490520:-1
position: 490520
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:490692:-1
position: 490692
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:464170-464301:-1:exon

position:464170:-1
position: 464170
reference: sequence
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position:464301:-1
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reference: sequence
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urn:…
SIO_000300: 9
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position:463977:-1
position: 463977
reference: sequence
type: ReverseStrandPosition
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CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X9
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_039564757.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
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urn:…
SIO_000300: 1
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SIO_000300: 4
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SIO_000300: 5
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SIO_000300: 8
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position:477851:-1
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reference: sequence
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position:477883:-1
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reference: sequence
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urn:…
SIO_000300: 9
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SIO_000300: 10
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CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
transcript id: XM_039564753.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,470678..470758,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
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urn:…
SIO_000300: 1
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SIO_000300: 5
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SIO_000300: 9
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reference: sequence
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urn:…
SIO_000300: 10
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SIO_000300: 11
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CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns
transcript id: XM_039564755.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,472687..472740,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 8
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SIO_000300: 9
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reference: sequence
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position:472740:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 10
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:461819-463977:-1:exon

CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
transcript id: XM_039564751.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,470678..470758,472687..472740,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 3
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SIO_000300: 4
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SIO_000300: 5
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SIO_000300: 6
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SIO_000300: 8
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SIO_000300: 10
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SIO_000300: 11
SIO_000628: feature:464170-464301:-1:exon

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SIO_000300: 12
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CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X8
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
transcript id: XM_039564756.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
so has part: feature:506779-506925:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 2
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SIO_000300: 4
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SIO_000300: 6
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urn:…
SIO_000300: 8
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position:486772:-1
position: 486772
reference: sequence
type: ReverseStrandPosition
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position:486843:-1
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reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 9
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:461819-463977:-1:exon

CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564754.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 10
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:461819-463977:-1:exon

CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
transcript id: XM_039564750.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,470678..470758,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
so has part: feature:506779-506925:-1:exon
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urn:…
SIO_000300: 1
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SIO_000300: 6
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SIO_000300: 7
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SIO_000628: feature:477851-477883:-1:exon

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SIO_000300: 10
SIO_000628: feature:470678-470758:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:461819-463977:-1:exon

CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_039564752.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,472687..472740,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
so has part: feature:506779-506925:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:597336-597462:-1:exon

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SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

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SIO_000628: feature:486772-486843:-1:exon

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SIO_000300: 9
SIO_000628: feature:477851-477883:-1:exon

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SIO_000300: 10
SIO_000628: feature:472687-472740:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:461819-463977:-1:exon

CADM1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CADM1
product: cell adhesion molecule 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_039564749.1
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(461819..463977,464170..464301,470678..470758,472687..472740,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597462))
location: region:461819-597462:-1
so has part: feature:597336-597462:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:597336-597462:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
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SIO_000628: feature:503191-503328:-1:exon

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SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

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SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

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urn:…
SIO_000300: 9
SIO_000628: feature:477851-477883:-1:exon

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SIO_000300: 10
SIO_000628: feature:472687-472740:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:470678-470758:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 13
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CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X10
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420692.1
type: Protein
SIO_000068: ncbiprotein

position:463859:-1
position: 463859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:597444:-1
position: 597444
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X9
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDTTATTEPAVHDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420691.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X5
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDTTATTEPAVHGTPVPPTASTEALPTVQLSNASLAFRPDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,470678..470758,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:470678-470758:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420687.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:470678-470758:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X7
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDTTATTEPAVHGFTQLPNSAEELDYGDLSDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,472687..472740,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:472687-472740:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:472687-472740:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X3
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDTTATTEPAVHGFTQLPNSAEELDYGDLSGTPVPPTASTEALPTVQLSNASLAFRPDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,470678..470758,472687..472740,477851..477883,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:472687-472740:-1:exon
so has part: feature:470678-470758:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420685.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:472687-472740:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:470678-470758:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X8
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDPPTTIPPPTTTTTTTTTIPTTITDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:486772-486843:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:486772-486843:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X6
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDPPTTIPPPTTTTTTTTTIPTTITDTTATTEPAVHDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:486772-486843:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420688.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:486772-486843:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X2
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDPPTTIPPPTTTTTTTTTIPTTITDTTATTEPAVHGTPVPPTASTEALPTVQLSNASLAFRPDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,470678..470758,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:486772-486843:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:470678-470758:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420684.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:486772-486843:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:470678-470758:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X4
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDPPTTIPPPTTTTTTTTTIPTTITDTTATTEPAVHGFTQLPNSAEELDYGDLSDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,472687..472740,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:486772-486843:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:472687-472740:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420686.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:486772-486843:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:472687-472740:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:463859-463977:-1:exon

CADM1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CADM1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: cell adhesion molecule 1 isoform X1
translation: MAGRAQPSGPAGSGGGAPGLLPLLLLLLSAAAIIPRGDGQNLVTEDVTVVEGDVATISCRVKNSDDSVIQLLNPNRQTIYFRDFRPLKDSRFQLVNFSNSELRVSLTNVSISDEGRYFCQLYTDPPQEIYTTITVLVPPRNLVIDIEKETAVEGEEIELNCTAMASRPATTIRWFKGNKELTGKSEVERWSDMYTVTSQLLLKVGREDDGVPVICLVDHPAVKDLQTQRYLEVMYKPQVRVSQNYPLQGLTREGEPLELTCTAFGKPQPTDMRWLRVDDEMPQHVVVSGSNLLISNLNKTDNGTYRCEASNAVGKSHADYMLFVYDPPTTIPPPTTTTTTTTTIPTTITDTTATTEPAVHGFTQLPNSAEELDYGDLSGTPVPPTASTEALPTVQLSNASLAFRPDSRAGEEGAIRSVDHAVVGGVVAVVVFAMLCLLIILGRYFARHKGTYFTHEAKGADDAADADTAIINAEGGQNNSEEKKEYFI
SIO_010081: CADM1
subclass of: SO_0000673
so part of: CADM1
location: complement(join(463859..463977,464170..464301,470678..470758,472687..472740,477851..477883,486772..486843,490520..490692,493502..493601,501342..501497,503191..503328,505713..505865,506779..506925,597336..597444))
location: region:463859-597444:-1
so has part: feature:597336-597444:-1:exon
so has part: feature:506779-506925:-1:exon
so has part: feature:505713-505865:-1:exon
so has part: feature:503191-503328:-1:exon
so has part: feature:501342-501497:-1:exon
so has part: feature:493502-493601:-1:exon
so has part: feature:490520-490692:-1:exon
so has part: feature:486772-486843:-1:exon
so has part: feature:477851-477883:-1:exon
so has part: feature:472687-472740:-1:exon
so has part: feature:470678-470758:-1:exon
so has part: feature:464170-464301:-1:exon
so has part: feature:463859-463977:-1:exon

XP_039420683.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:597336-597444:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:506779-506925:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:505713-505865:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:503191-503328:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:501342-501497:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:493502-493601:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:490520-490692:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:486772-486843:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:477851-477883:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:472687-472740:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:470678-470758:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:464170-464301:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:463859-463977:-1:exon

BUD13
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: BUD13
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(801172..809754)
location: region:801172-809754:-1
so has part: feature:801172-809754:-1:exon
subclass of: SO_0000010

104692170
type: Gene
SIO_000068: ncbigene

position:801172:-1
position: 801172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:809754:-1
position: 809754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:801172-809754:-1:exon

BUD13
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: BUD13
product: BUD13 homolog
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
transcript id: XM_039564969.1
SIO_010081: BUD13
subclass of: SO_0000673
so part of: BUD13
location: complement(join(801172..804848,805159..805240,805586..805767,806046..806184,806618..806726,806905..806999,807292..808154,808594..808651,808810..808894,809264..809357,809564..809754))
location: region:801172-809754:-1
so has part: feature:809564-809754:-1:exon
so has part: feature:809264-809357:-1:exon
so has part: feature:808810-808894:-1:exon
so has part: feature:808594-808651:-1:exon
so has part: feature:807292-808154:-1:exon
so has part: feature:806905-806999:-1:exon
so has part: feature:806618-806726:-1:exon
so has part: feature:806046-806184:-1:exon
so has part: feature:805586-805767:-1:exon
so has part: feature:805159-805240:-1:exon
so has part: feature:801172-804848:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:809564-809754:-1:exon

position:809564:-1
position: 809564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:809264-809357:-1:exon

position:809264:-1
position: 809264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:809357:-1
position: 809357
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:808810-808894:-1:exon

position:808810:-1
position: 808810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:808894:-1
position: 808894
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:808594-808651:-1:exon

position:808594:-1
position: 808594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:808651:-1
position: 808651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:807292-808154:-1:exon

position:807292:-1
position: 807292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:808154:-1
position: 808154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:806905-806999:-1:exon

position:806905:-1
position: 806905
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:806999:-1
position: 806999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:806618-806726:-1:exon

position:806618:-1
position: 806618
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:806726:-1
position: 806726
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:806046-806184:-1:exon

position:806046:-1
position: 806046
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:806184:-1
position: 806184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:805586-805767:-1:exon

position:805586:-1
position: 805586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:805767:-1
position: 805767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:805159-805240:-1:exon

position:805159:-1
position: 805159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:805240:-1
position: 805240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:801172-804848:-1:exon

position:804848:-1
position: 804848
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BUD13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: BUD13
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: BUD13 homolog
translation: MAAPGVSKAEYLRRYLSGPXEPAQPRRRRKKKPPGGTGRAGMRIVDDDVSWSSIAAAPEKEEEEEDEGDMPVVAEFVDERPDEVKLMEEFRTNSKWKLLGDQNEDSQSSDISGPAKSATRRQRHDSPEPSPPGGKHNGSLDLSPPRRQRHDTPDPSPPRRRRHDTPDPSPPRRQRHDTPDSSPPKRQRRDTPDLSPPRRRQRHDTPDPSPPRRRRHDTPDSSPPKRQRHDTPDPSPPRRQRCDTPDPSPPRRRQRHDTPDPSPPRRRRPGTPDPSPPRRRQRHNTPDPSPPRRQRHDTPDLSPPRRQRRDTPDPSPPRRQRHDTPDPSPPRRQRRDTLDPSPPRRQRHDTPDPSPPRRQRHDTPDPSPPRRRRHDTPDLSPPRQQRQDLSPRREKPGSPSGKKSRRKGRTSPAGRDQHRSRSPPEHSPHHQDTKGSPKKANTMSSGAKAGLVSADVLRREKQELQKHERSTKHLEEESRNAQTVFRDKSGRKRNLAQEQLEQRLKAEAESKREEQYAKWGKGLAQERQQQQNVEDAIKEMQKPLARYIDDQDLDRMLREQEREGDPMAALIKKRKAKENKEKEKPRYKGPAPPLNRFNIWPGHRWDGVDRSNGFEQQRFARIANKKAVQELAYKWSVEDM
SIO_010081: BUD13
subclass of: SO_0000673
so part of: BUD13
location: complement(join(804755..804848,805159..805240,805586..805767,806046..806184,806618..806726,806905..806999,807292..808154,808594..808651,808810..808894,809264..809357,809564..809684))
location: region:804755-809684:-1
so has part: feature:809564-809684:-1:exon
so has part: feature:809264-809357:-1:exon
so has part: feature:808810-808894:-1:exon
so has part: feature:808594-808651:-1:exon
so has part: feature:807292-808154:-1:exon
so has part: feature:806905-806999:-1:exon
so has part: feature:806618-806726:-1:exon
so has part: feature:806046-806184:-1:exon
so has part: feature:805586-805767:-1:exon
so has part: feature:805159-805240:-1:exon
so has part: feature:804755-804848:-1:exon

XP_039420903.1
type: Protein
SIO_000068: ncbiprotein

position:804755:-1
position: 804755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:809684:-1
position: 809684
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:809564-809684:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:809264-809357:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:808810-808894:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:808594-808651:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:807292-808154:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:806905-806999:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:806618-806726:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:806046-806184:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:805586-805767:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:805159-805240:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:804755-804848:-1:exon

ZPR1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ZPR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(809915..813631)
location: region:809915-813631:-1
so has part: feature:809915-813631:-1:exon
subclass of: SO_0000010

104692171
type: Gene
SIO_000068: ncbigene

position:809915:-1
position: 809915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:813631:-1
position: 813631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:809915-813631:-1:exon

ZPR1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: ZPR1
product: ZPR1 zinc finger
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564934.1
SIO_010081: ZPR1
subclass of: SO_0000673
so part of: ZPR1
location: complement(join(809915..810250,810472..810537,810635..810721,810815..810925,811031..811120,811370..811440,811658..811724,811811..811864,811936..812058,812135..812221,812434..812504,812597..812687,812840..813001,813462..813631))
location: region:809915-813631:-1
so has part: feature:813462-813631:-1:exon
so has part: feature:812840-813001:-1:exon
so has part: feature:812597-812687:-1:exon
so has part: feature:812434-812504:-1:exon
so has part: feature:812135-812221:-1:exon
so has part: feature:811936-812058:-1:exon
so has part: feature:811811-811864:-1:exon
so has part: feature:811658-811724:-1:exon
so has part: feature:811370-811440:-1:exon
so has part: feature:811031-811120:-1:exon
so has part: feature:810815-810925:-1:exon
so has part: feature:810635-810721:-1:exon
so has part: feature:810472-810537:-1:exon
so has part: feature:809915-810250:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:813462-813631:-1:exon

position:813462:-1
position: 813462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:812840-813001:-1:exon

position:812840:-1
position: 812840
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:813001:-1
position: 813001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:812597-812687:-1:exon

position:812597:-1
position: 812597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:812687:-1
position: 812687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:812434-812504:-1:exon

position:812434:-1
position: 812434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:812504:-1
position: 812504
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:812135-812221:-1:exon

position:812135:-1
position: 812135
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:812221:-1
position: 812221
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:811936-812058:-1:exon

position:811936:-1
position: 811936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:812058:-1
position: 812058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:811811-811864:-1:exon

position:811811:-1
position: 811811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:811864:-1
position: 811864
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:811658-811724:-1:exon

position:811658:-1
position: 811658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:811724:-1
position: 811724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:811370-811440:-1:exon

position:811370:-1
position: 811370
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:811440:-1
position: 811440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:811031-811120:-1:exon

position:811031:-1
position: 811031
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:811120:-1
position: 811120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:810815-810925:-1:exon

position:810815:-1
position: 810815
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:810925:-1
position: 810925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:810635-810721:-1:exon

position:810635:-1
position: 810635
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:810721:-1
position: 810721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:810472-810537:-1:exon

position:810472:-1
position: 810472
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:810537:-1
position: 810537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:809915-810250:-1:exon

position:810250:-1
position: 810250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

ZPR1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ZPR1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: zinc finger protein ZPR1
translation: MSALGAMEAAAGPGPGAGPGGSLFRPLSAEDGEQQPAEIESLCMNCFRNGVTRLLLTRIPFFKEIIVSSFSCDSCSWSNTEIQSAGRIQEQGVRYTLAVASRQDMNREVVKTDCASARIPELDFEIPAFSQKGVLTTIEGIIDRAVAGLEQDQPARRATDKEVARKIDEFIGKLRQLKEVNSPFTFILDDPSGNSFVENPHAPQRDEALVVTHYRRSPQQSALLGLEGEEVDAKPRDAAEDLRDEVLQFNTNCPECNAPASTNMKLVQIPHFKEVIIMATNCDSCGHRTNEVKSGGAIEPRGTRITLRITDPSDMTRDILKSETCSVEIPELEFELGMGALGGKFTTLEGLLKDIRDLVEKNPFTLGDSSTPSRTGKLQEFIGKLQDIIEGKTQAHVIMDDPAGNSYLQNVYAPEEDPELRVQRYERTFEQNEELGLNDMRTEGYETEVASGR
SIO_010081: ZPR1
subclass of: SO_0000673
so part of: ZPR1
location: complement(join(810116..810250,810472..810537,810635..810721,810815..810925,811031..811120,811370..811440,811658..811724,811811..811864,811936..812058,812135..812221,812434..812504,812597..812687,812840..813001,813462..813608))
location: region:810116-813608:-1
so has part: feature:813462-813608:-1:exon
so has part: feature:812840-813001:-1:exon
so has part: feature:812597-812687:-1:exon
so has part: feature:812434-812504:-1:exon
so has part: feature:812135-812221:-1:exon
so has part: feature:811936-812058:-1:exon
so has part: feature:811811-811864:-1:exon
so has part: feature:811658-811724:-1:exon
so has part: feature:811370-811440:-1:exon
so has part: feature:811031-811120:-1:exon
so has part: feature:810815-810925:-1:exon
so has part: feature:810635-810721:-1:exon
so has part: feature:810472-810537:-1:exon
so has part: feature:810116-810250:-1:exon

XP_039420868.1
type: Protein
SIO_000068: ncbiprotein

position:810116:-1
position: 810116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:813608:-1
position: 813608
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:813462-813608:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:812840-813001:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:812597-812687:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:812434-812504:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:812135-812221:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:811936-812058:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:811811-811864:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:811658-811724:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:811370-811440:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:811031-811120:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:810815-810925:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:810635-810721:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:810472-810537:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:810116-810250:-1:exon

APOA5
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: APOA5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(813701..815372)
location: region:813701-815372:-1
so has part: feature:813701-815372:-1:exon
subclass of: SO_0000010

120411245
type: Gene
SIO_000068: ncbigene

position:813701:-1
position: 813701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:815372:-1
position: 815372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:813701-815372:-1:exon

APOA5
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: APOA5
product: apolipoprotein A5
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transcript id: XM_039564935.1
SIO_010081: APOA5
subclass of: SO_0000673
so part of: APOA5
location: complement(join(813701..814698,814883..815372))
location: region:813701-815372:-1
so has part: feature:814883-815372:-1:exon
so has part: feature:813701-814698:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:814883-815372:-1:exon

position:814883:-1
position: 814883
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:813701-814698:-1:exon

position:814698:-1
position: 814698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

APOA5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: APOA5
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 3 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: apolipoprotein A-V
translation: MLLKAALLLSLLATCPGGCGHGAGGSRAGWAAPQPQLLPAVSPAKPAQSGFWEYLSQLTGDKDSLEHGQSKLGKDIMNLKESIQDGVSYMGDFLEKLSPLNRGLQPRLYQDSDSLRKVIRRELDSLRVKLSPYVDEVHQQVGKHLDDLRQQLQPFTEELLDQVSLRARELRRHLMPSREVTAQLLDGADELQRFMAHYTDKIAFHTDQVKDIFHPYTDRLLTEIHRNVEELHRSVAPHARASPEQLNQHIQELSAKLTRNARDLHQQIQKNLEQLKAKLSLYPGSPGEPAAPPGRYREALAREVQRRVEEFRQDTYAQIQAFTRALDQETEEMRLKLSARPDPPEEPLDAPPPPLEDLRARLDALWRDLALSLSERGGEGPRGGAGEARAGPGGAAGPGRLRG
SIO_010081: APOA5
subclass of: SO_0000673
so part of: APOA5
location: complement(join(813716..814698,814883..815114))
location: region:813716-815114:-1
so has part: feature:814883-815114:-1:exon
so has part: feature:813716-814698:-1:exon

XP_039420869.1
type: Protein
SIO_000068: ncbiprotein

position:813716:-1
position: 813716
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:815114:-1
position: 815114
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:814883-815114:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:813716-814698:-1:exon

APOA4
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: APOA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(816736..818276)
location: region:816736-818276:-1
so has part: feature:816736-818276:-1:exon
subclass of: SO_0000010

120411246
type: Gene
SIO_000068: ncbigene

position:816736:-1
position: 816736
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818276:-1
position: 818276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:816736-818276:-1:exon

APOA4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: APOA4
product: apolipoprotein A4, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 7 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
transcript id: XM_039564938.1
SIO_010081: APOA4
subclass of: SO_0000673
so part of: APOA4
location: complement(join(816736..817668,817789..817915,818036..818102,818211..818276))
location: region:816736-818276:-1
so has part: feature:818211-818276:-1:exon
so has part: feature:818036-818102:-1:exon
so has part: feature:817789-817915:-1:exon
so has part: feature:816736-817668:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:818211-818276:-1:exon

position:818211:-1
position: 818211
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:818036-818102:-1:exon

position:818036:-1
position: 818036
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818102:-1
position: 818102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:817789-817915:-1:exon

position:817789:-1
position: 817789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:817915:-1
position: 817915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:816736-817668:-1:exon

position:817668:-1
position: 817668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

APOA4
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: APOA4
product: apolipoprotein A4, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 7 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
transcript id: XM_039564937.1
SIO_010081: APOA4
subclass of: SO_0000673
so part of: APOA4
location: complement(join(816736..817668,817789..817915,818036..818103))
location: region:816736-818103:-1
so has part: feature:818036-818103:-1:exon
so has part: feature:817789-817915:-1:exon
so has part: feature:816736-817668:-1:exon

position:818103:-1
position: 818103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:818036-818103:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:817789-817915:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:816736-817668:-1:exon

APOA4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: APOA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apolipoprotein A-IV
translation: MAPKAAALVLVLLAISGSRADVNPDEVASVIWKYFTELGSNAKDTVDQLQQTEISKQLNTLLKSNLQSVSAYAEDLQERLVPFATELQARLAQDSQRLKEQIRRELQELQAKLAPYADEVHQQIGTNIRQLQAKISPYAEELRSQVDRSAGELQRALEPYAAELRERLQDNAESVRASLSPYADRLQQQIDGGVESLKERLSPVADELKAQVEQSVAELRRGLSPYAQEVQDGLNRQLESLTLQMERAAEELRTRLAASSEELRAQLSPLARELREAASGDAESLRQRLALLAQQLDQRVGQTLEAFRQQAAPFGDTFGKQLVQRLEEMRGKLESGTAGVEDHLELLEKEVREKVAAFLSTVPPPQN
SIO_010081: APOA4
subclass of: SO_0000673
so part of: APOA4
location: complement(join(816741..817668,817789..817915,818036..818084))
location: region:816741-818084:-1
so has part: feature:818036-818084:-1:exon
so has part: feature:817789-817915:-1:exon
so has part: feature:816741-817668:-1:exon

XP_039420871.1
type: Protein
SIO_000068: ncbiprotein

position:816741:-1
position: 816741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:818084:-1
position: 818084
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:818036-818084:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:817789-817915:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:816741-817668:-1:exon

APOA4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: APOA4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apolipoprotein A-IV
translation: MAPKAAALVLVLLAISGSRADVNPDEVASVIWKYFTELGSNAKDTVDQLQQTEISKQLNTLLKSNLQSVSAYAEDLQERLVPFATELQARLAQDSQRLKEQIRRELQELQAKLAPYADEVHQQIGTNIRQLQAKISPYAEELRSQVDRSAGELQRALEPYAAELRERLQDNAESVRASLSPYADRLQQQIDGGVESLKERLSPVADELKAQVEQSVAELRRGLSPYAQEVQDGLNRQLESLTLQMERAAEELRTRLAASSEELRAQLSPLARELREAASGDAESLRQRLALLAQQLDQRVGQTLEAFRQQAAPFGDTFGKQLVQRLEEMRGKLESGTAGVEDHLELLEKEVREKVAAFLSTVPPPQN
SIO_010081: APOA4
subclass of: SO_0000673
so part of: APOA4
location: complement(join(816741..817668,817789..817915,818036..818084))
location: region:816741-818084:-1
so has part: feature:818036-818084:-1:exon
so has part: feature:817789-817915:-1:exon
so has part: feature:816741-817668:-1:exon

XP_039420872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:818036-818084:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:817789-817915:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:816741-817668:-1:exon

LOC120411248
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: LOC120411248
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 819211..819980
location: region:819211-819980:1
so has part: feature:819211-819980:1:exon
subclass of: SO_0000010

120411248
type: Gene
SIO_000068: ncbigene

position:819211:1
position: 819211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819980:1
position: 819980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:819211-819980:1:exon

LOC120411248
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: LOC120411248
product: apolipoprotein C-III-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
transcript id: XM_039564940.1
SIO_010081: LOC120411248
subclass of: SO_0000673
so part of: LOC120411248
location: join(819211..819255,819367..819426,819546..819672,819790..819980)
location: region:819211-819980:1
so has part: feature:819211-819255:1:exon
so has part: feature:819367-819426:1:exon
so has part: feature:819546-819672:1:exon
so has part: feature:819790-819980:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:819211-819255:1:exon

position:819255:1
position: 819255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:819367-819426:1:exon

position:819367:1
position: 819367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819426:1
position: 819426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:819546-819672:1:exon

position:819546:1
position: 819546
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819672:1
position: 819672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:819790-819980:1:exon

position:819790:1
position: 819790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC120411248
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: LOC120411248
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apolipoprotein C-III-like
translation: MKASLLFLLACTAVLAVGARANTPEEPKALVQKVQELAQKATDMAKEAFSRVRESEAAQQARQWLSDSAELAKQRLVWLKEQLAELWKKTSAA
SIO_010081: LOC120411248
subclass of: SO_0000673
so part of: LOC120411248
location: join(819369..819426,819546..819672,819790..819886)
location: region:819369-819886:1
so has part: feature:819369-819426:1:exon
so has part: feature:819546-819672:1:exon
so has part: feature:819790-819886:1:exon

XP_039420874.1
type: Protein
SIO_000068: ncbiprotein

position:819369:1
position: 819369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:819886:1
position: 819886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:819369-819426:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:819546-819672:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:819790-819886:1:exon

APOA1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: APOA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(820310..822214)
location: region:820310-822214:-1
so has part: feature:820310-822214:-1:exon
subclass of: SO_0000010

120411247
type: Gene
SIO_000068: ncbigene

position:820310:-1
position: 820310
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:822214:-1
position: 822214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:820310-822214:-1:exon

APOA1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: APOA1
product: apolipoprotein A1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 mRNAs, 149 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564939.1
SIO_010081: APOA1
subclass of: SO_0000673
so part of: APOA1
location: complement(join(820310..821154,821230..821383,821621..821676,821818..822214))
location: region:820310-822214:-1
so has part: feature:821818-822214:-1:exon
so has part: feature:821621-821676:-1:exon
so has part: feature:821230-821383:-1:exon
so has part: feature:820310-821154:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:821818-822214:-1:exon

position:821818:-1
position: 821818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:821621-821676:-1:exon

position:821621:-1
position: 821621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:821676:-1
position: 821676
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:821230-821383:-1:exon

position:821230:-1
position: 821230
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:821383:-1
position: 821383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:820310-821154:-1:exon

position:821154:-1
position: 821154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

APOA1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: APOA1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: apolipoprotein A-I
translation: MRAVVLTLALLCLTGTQARSFWQHDDPQAPLERLKDMLTVYLETVKASGKEAIAQFEASAVGKQLDLKLGENLDTLGAAAAKLREDVAPYYKEVRDMWLKDTESLRQELTKDLEEVKEKIKPFLDQFSAKWTEDLEQYRQRLAPLAQELKEISKQKVELLQQKLTPVAEEARDRLRGHVEELRKNVAPFSDELRQKLSQKLEEIREKGIPQAAEYQAKVVEQLGKLREKMTPLMQDFKERLTPYTESLKARFISLLEDLQKTVA
SIO_010081: APOA1
subclass of: SO_0000673
so part of: APOA1
location: complement(join(820557..821154,821230..821383,821621..821663))
location: region:820557-821663:-1
so has part: feature:821621-821663:-1:exon
so has part: feature:821230-821383:-1:exon
so has part: feature:820557-821154:-1:exon

XP_039420873.1
type: Protein
SIO_000068: ncbiprotein

position:820557:-1
position: 820557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:821663:-1
position: 821663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:821621-821663:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:821230-821383:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:820557-821154:-1:exon

SIK3
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: SIK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(822977..893895)
location: region:822977-893895:-1
so has part: feature:822977-893895:-1:exon
subclass of: SO_0000010

104692056
type: Gene
SIO_000068: ncbigene

position:822977:-1
position: 822977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:893895:-1
position: 893895
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:822977-893895:-1:exon

SIK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIK3
product: SIK family kinase 3, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
transcript id: XM_039564737.1
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(822977..824646,824977..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,839897..839967,840478..840633,841300..841453,841903..842012,842122..842199,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857624,893764..893895))
location: region:822977-893895:-1
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urn:…
SIO_000300: 1
SIO_000628: feature:893764-893895:-1:exon

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urn:…
SIO_000300: 2
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position:857624:-1
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urn:…
SIO_000300: 3
SIO_000628: feature:856213-856276:-1:exon

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urn:…
SIO_000300: 4
SIO_000628: feature:850443-850604:-1:exon

position:850443:-1
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urn:…
SIO_000300: 5
SIO_000628: feature:844704-844828:-1:exon

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urn:…
SIO_000300: 6
SIO_000628: feature:844318-844441:-1:exon

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urn:…
SIO_000300: 7
SIO_000628: feature:843481-843599:-1:exon

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urn:…
SIO_000300: 8
SIO_000628: feature:843030-843140:-1:exon

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urn:…
SIO_000300: 9
SIO_000628: feature:842749-842892:-1:exon

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urn:…
SIO_000300: 10
SIO_000628: feature:842122-842199:-1:exon

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urn:…
SIO_000300: 11
SIO_000628: feature:841903-842012:-1:exon

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urn:…
SIO_000300: 12
SIO_000628: feature:841300-841453:-1:exon

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urn:…
SIO_000300: 13
SIO_000628: feature:840478-840633:-1:exon

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urn:…
SIO_000300: 14
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urn:…
SIO_000300: 15
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urn:…
SIO_000300: 16
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urn:…
SIO_000300: 17
SIO_000628: feature:832623-832708:-1:exon

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urn:…
SIO_000300: 18
SIO_000628: feature:831850-831959:-1:exon

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urn:…
SIO_000300: 19
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urn:…
SIO_000300: 20
SIO_000628: feature:829793-830667:-1:exon

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urn:…
SIO_000300: 21
SIO_000628: feature:826105-826268:-1:exon

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urn:…
SIO_000300: 22
SIO_000628: feature:825246-825378:-1:exon

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urn:…
SIO_000300: 23
SIO_000628: feature:824977-825144:-1:exon

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SIO_000300: 24
SIO_000628: feature:822977-824646:-1:exon

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SIK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIK3
product: SIK family kinase 3, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
transcript id: XM_039564736.1
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(822977..824646,824977..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,836751..836894,839897..839967,840478..840633,841300..841453,841903..842012,842122..842199,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857624,893764..893895))
location: region:822977-893895:-1
so has part: feature:893764-893895:-1:exon
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so has part: feature:833932-834082:-1:exon
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so has part: feature:825246-825378:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:893764-893895:-1:exon

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SIO_000300: 2
SIO_000628: feature:857508-857624:-1:exon

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SIO_000628: feature:839897-839967:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:836751-836894:-1:exon

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reference: sequence
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reference: sequence
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urn:…
SIO_000300: 16
SIO_000628: feature:833932-834082:-1:exon

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SIO_000300: 17
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SIO_000300: 18
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SIO_000300: 19
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SIO_000300: 20
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SIO_000300: 21
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SIO_000300: 22
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SIO_000300: 23
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SIO_000300: 24
SIO_000628: feature:824977-825144:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:822977-824646:-1:exon

SIK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIK3
product: SIK family kinase 3, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
transcript id: XM_039564735.1
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(822977..824646,824977..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,836751..836894,839897..839967,840478..840633,841300..841453,841903..842012,842122..842202,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857624,893764..893895))
location: region:822977-893895:-1
so has part: feature:893764-893895:-1:exon
so has part: feature:857508-857624:-1:exon
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urn:…
SIO_000300: 1
SIO_000628: feature:893764-893895:-1:exon

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urn:…
SIO_000300: 10
SIO_000628: feature:842122-842202:-1:exon

position:842202:-1
position: 842202
reference: sequence
type: ReverseStrandPosition
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urn:…
SIO_000300: 11
SIO_000628: feature:841903-842012:-1:exon

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SIO_000300: 24
SIO_000628: feature:824977-825144:-1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:822977-824646:-1:exon

SIK3
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIK3
product: SIK family kinase 3, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
transcript id: XM_039564734.1
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(822977..824646,824977..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,839897..839967,840478..840633,841300..841453,841903..842012,842122..842202,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857624))
location: region:822977-857624:-1
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urn:…
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SIO_000628: feature:839897-839967:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:833932-834082:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:833023-833148:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:832623-832708:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:831850-831959:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:830915-831260:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:829793-830667:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:826105-826268:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:825246-825378:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:824977-825144:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:822977-824646:-1:exon

SIK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase SIK3 isoform X4
translation: MKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVAAVNFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNIFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPSKRLSMEQICKHKWMKLGEADAEFDRLIAECQHLKTERQLEPLNEDVLLAMADMGLDKERTVQSLRADAYDHYSAIYSLLCDRLKRHKNLRIAPSPSIPRTMTFPTSANIQTEQTGNTMNINVPQVQLINPENQIVETDGTMNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPRVTPQAPFLQVTPNVNFMHNVLPRQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQSSIYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGHMDERTLEKTQQQHMLYQQEQHHQILHQQIQDCIRPPQPSPPLQAPCENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPNSSPPPVSSSVLQPHGAASQSQFQGMPSHNTIFPQSGNCSPPPAMGLTCLALQQQQSQPQQVTIQVQEPGDMVGSSLVGGQGLASHARGMSLSPSASQIQMQHRANLMASLSYGHRQLSKQLSADSAESHSLNVNRYPPANYDQVHLHPHLFPEQPRVSPSSYSPSGGVGFPAAQQALKVPQLDQYPSFPPNAHQQQQHYTASALQQALLSPTPPDYSRHQQVPHILQGLLSPRHSLTGHTDMRLPQAEFAQLIKRRQQQQQQQEFQELFRHMSQGDAGSMGTSMGQNLSERQSLSLPYQSADTYHPQNSPQHLLKIRAQECIQQVPASVPPPQGYGHQPALFHSESMEEDCACEGNRDSFPDSKSSNTLTKGCHETPLLVNAGGHGDPESLLGTANPAQELGTHQYRHQPTPGFRNKVPSRESIVGNCMDRSSPGQAMQVPDHNGLGYPVRPSSSEHPRPRTLQRHHTIQNSDDAYVQLDNLPGMSLMAGKALSSARMSDAVLSQSSLMASQQLRDRDGEECGESLEGQEHPNLGDGSQHLNTSCYPSTCITDVLLSYKHPEVPFGMEQAGV
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(824987..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,839897..839967,840478..840633,841300..841453,841903..842012,842122..842199,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857549))
location: region:824987-857549:-1
so has part: feature:857508-857549:-1:exon
so has part: feature:856213-856276:-1:exon
so has part: feature:850443-850604:-1:exon
so has part: feature:844704-844828:-1:exon
so has part: feature:844318-844441:-1:exon
so has part: feature:843481-843599:-1:exon
so has part: feature:843030-843140:-1:exon
so has part: feature:842749-842892:-1:exon
so has part: feature:842122-842199:-1:exon
so has part: feature:841903-842012:-1:exon
so has part: feature:841300-841453:-1:exon
so has part: feature:840478-840633:-1:exon
so has part: feature:839897-839967:-1:exon
so has part: feature:833932-834082:-1:exon
so has part: feature:833023-833148:-1:exon
so has part: feature:832623-832708:-1:exon
so has part: feature:831850-831959:-1:exon
so has part: feature:830915-831260:-1:exon
so has part: feature:829793-830667:-1:exon
so has part: feature:826105-826268:-1:exon
so has part: feature:825246-825378:-1:exon
so has part: feature:824987-825144:-1:exon

XP_039420671.1
type: Protein
SIO_000068: ncbiprotein

position:824987:-1
position: 824987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:857549:-1
position: 857549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:857508-857549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:856213-856276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:850443-850604:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:844704-844828:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:844318-844441:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:843481-843599:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:843030-843140:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842749-842892:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:842122-842199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:841903-842012:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:841300-841453:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:840478-840633:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:839897-839967:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:833932-834082:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:833023-833148:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:832623-832708:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:831850-831959:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:830915-831260:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:829793-830667:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:826105-826268:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:825246-825378:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:824987-825144:-1:exon

SIK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase SIK3 isoform X3
translation: MKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVAAVNFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNIFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPSKRLSMEQICKHKWMKLGEADAEFDRLIAECQHLKTERQLEPLNEDVLLAMADMGLDKERTVQSLRADAYDHYSAIYSLLCDRLKRHKNLRIAPSPSIPRTMTFPTSANIQTEQTGNTMNINVPQVQLINPENQIVETDGTMNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPRVTPQAPFLQVTPNVNFMHNVLPRQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTNPTAEIPPDLQRQLGQQSFRPRAWAPHLGPDQHRSIYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGHMDERTLEKTQQQHMLYQQEQHHQILHQQIQDCIRPPQPSPPLQAPCENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPNSSPPPVSSSVLQPHGAASQSQFQGMPSHNTIFPQSGNCSPPPAMGLTCLALQQQQSQPQQVTIQVQEPGDMVGSSLVGGQGLASHARGMSLSPSASQIQMQHRANLMASLSYGHRQLSKQLSADSAESHSLNVNRYPPANYDQVHLHPHLFPEQPRVSPSSYSPSGGVGFPAAQQALKVPQLDQYPSFPPNAHQQQQHYTASALQQALLSPTPPDYSRHQQVPHILQGLLSPRHSLTGHTDMRLPQAEFAQLIKRRQQQQQQQEFQELFRHMSQGDAGSMGTSMGQNLSERQSLSLPYQSADTYHPQNSPQHLLKIRAQECIQQVPASVPPPQGYGHQPALFHSESMEEDCACEGNRDSFPDSKSSNTLTKGCHETPLLVNAGGHGDPESLLGTANPAQELGTHQYRHQPTPGFRNKVPSRESIVGNCMDRSSPGQAMQVPDHNGLGYPVRPSSSEHPRPRTLQRHHTIQNSDDAYVQLDNLPGMSLMAGKALSSARMSDAVLSQSSLMASQQLRDRDGEECGESLEGQEHPNLGDGSQHLNTSCYPSTCITDVLLSYKHPEVPFGMEQAGV
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(824987..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,836751..836894,839897..839967,840478..840633,841300..841453,841903..842012,842122..842199,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857549))
location: region:824987-857549:-1
so has part: feature:857508-857549:-1:exon
so has part: feature:856213-856276:-1:exon
so has part: feature:850443-850604:-1:exon
so has part: feature:844704-844828:-1:exon
so has part: feature:844318-844441:-1:exon
so has part: feature:843481-843599:-1:exon
so has part: feature:843030-843140:-1:exon
so has part: feature:842749-842892:-1:exon
so has part: feature:842122-842199:-1:exon
so has part: feature:841903-842012:-1:exon
so has part: feature:841300-841453:-1:exon
so has part: feature:840478-840633:-1:exon
so has part: feature:839897-839967:-1:exon
so has part: feature:836751-836894:-1:exon
so has part: feature:833932-834082:-1:exon
so has part: feature:833023-833148:-1:exon
so has part: feature:832623-832708:-1:exon
so has part: feature:831850-831959:-1:exon
so has part: feature:830915-831260:-1:exon
so has part: feature:829793-830667:-1:exon
so has part: feature:826105-826268:-1:exon
so has part: feature:825246-825378:-1:exon
so has part: feature:824987-825144:-1:exon

XP_039420670.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:857508-857549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:856213-856276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:850443-850604:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:844704-844828:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:844318-844441:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:843481-843599:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:843030-843140:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842749-842892:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:842122-842199:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:841903-842012:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:841300-841453:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:840478-840633:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:839897-839967:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:836751-836894:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:833932-834082:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:833023-833148:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:832623-832708:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:831850-831959:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:830915-831260:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:829793-830667:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:826105-826268:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:825246-825378:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:824987-825144:-1:exon

SIK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase SIK3 isoform X1
translation: MKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVAAVNFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNIFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPSKRLSMEQICKHKWMKLGEADAEFDRLIAECQHLKTERQLEPLNEDVLLAMADMGLDKERTVQSLRADAYDHYSAIYSLLCDRLKRHKNLRIAPSPSIPRTMTFPTSANIQQTEQTGNTMNINVPQVQLINPENQIVETDGTMNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPRVTPQAPFLQVTPNVNFMHNVLPRQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQSSIYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGHMDERTLEKTQQQHMLYQQEQHHQILHQQIQDCIRPPQPSPPLQAPCENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPNSSPPPVSSSVLQPHGAASQSQFQGMPSHNTIFPQSGNCSPPPAMGLTCLALQQQQSQPQQVTIQVQEPGDMVGSSLVGGQGLASHARGMSLSPSASQIQMQHRANLMASLSYGHRQLSKQLSADSAESHSLNVNRYPPANYDQVHLHPHLFPEQPRVSPSSYSPSGGVGFPAAQQALKVPQLDQYPSFPPNAHQQQQHYTASALQQALLSPTPPDYSRHQQVPHILQGLLSPRHSLTGHTDMRLPQAEFAQLIKRRQQQQQQQEFQELFRHMSQGDAGSMGTSMGQNLSERQSLSLPYQSADTYHPQNSPQHLLKIRAQECIQQVPASVPPPQGYGHQPALFHSESMEEDCACEGNRDSFPDSKSSNTLTKGCHETPLLVNAGGHGDPESLLGTANPAQELGTHQYRHQPTPGFRNKVPSRESIVGNCMDRSSPGQAMQVPDHNGLGYPVRPSSSEHPRPRTLQRHHTIQNSDDAYVQLDNLPGMSLMAGKALSSARMSDAVLSQSSLMASQQLRDRDGEECGESLEGQEHPNLGDGSQHLNTSCYPSTCITDVLLSYKHPEVPFGMEQAGV
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(824987..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,839897..839967,840478..840633,841300..841453,841903..842012,842122..842202,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857549))
location: region:824987-857549:-1
so has part: feature:857508-857549:-1:exon
so has part: feature:856213-856276:-1:exon
so has part: feature:850443-850604:-1:exon
so has part: feature:844704-844828:-1:exon
so has part: feature:844318-844441:-1:exon
so has part: feature:843481-843599:-1:exon
so has part: feature:843030-843140:-1:exon
so has part: feature:842749-842892:-1:exon
so has part: feature:842122-842202:-1:exon
so has part: feature:841903-842012:-1:exon
so has part: feature:841300-841453:-1:exon
so has part: feature:840478-840633:-1:exon
so has part: feature:839897-839967:-1:exon
so has part: feature:833932-834082:-1:exon
so has part: feature:833023-833148:-1:exon
so has part: feature:832623-832708:-1:exon
so has part: feature:831850-831959:-1:exon
so has part: feature:830915-831260:-1:exon
so has part: feature:829793-830667:-1:exon
so has part: feature:826105-826268:-1:exon
so has part: feature:825246-825378:-1:exon
so has part: feature:824987-825144:-1:exon

XP_039420668.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:857508-857549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:856213-856276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:850443-850604:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:844704-844828:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:844318-844441:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:843481-843599:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:843030-843140:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842749-842892:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:842122-842202:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:841903-842012:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:841300-841453:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:840478-840633:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:839897-839967:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:833932-834082:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:833023-833148:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:832623-832708:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:831850-831959:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:830915-831260:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:829793-830667:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:826105-826268:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:825246-825378:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:824987-825144:-1:exon

SIK3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIK3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: serine/threonine-protein kinase SIK3 isoform X2
translation: MKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVAAVNFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNIFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPSKRLSMEQICKHKWMKLGEADAEFDRLIAECQHLKTERQLEPLNEDVLLAMADMGLDKERTVQSLRADAYDHYSAIYSLLCDRLKRHKNLRIAPSPSIPRTMTFPTSANIQQTEQTGNTMNINVPQVQLINPENQIVETDGTMNLDSDEGEEPSPEALVRYLSMRRHTVGVADPRTEVMEDLQKLLPGFPRVTPQAPFLQVTPNVNFMHNVLPRQNLQPTGQLEYKEQSLLQPPTLQLLNGMGPLGRRASDGGANIQLHAQQLLKRPRGPSPLVTMTPAVPAVTPVDEESSDGEPDQEAVQRYLANRSKRHTLAMTNPTAEIPPDLQRQLGQQSFRPRAWAPHLGPDQHRSIYKDSNTLHLPTERFSPVRRFSDGAASIQAFKAHLEKMGNNSSIKQLQQECEQLQKMYGGHMDERTLEKTQQQHMLYQQEQHHQILHQQIQDCIRPPQPSPPLQAPCENQPALLTHQLQRLRIQPSSPPPNHPNNHLFRQPNSSPPPVSSSVLQPHGAASQSQFQGMPSHNTIFPQSGNCSPPPAMGLTCLALQQQQSQPQQVTIQVQEPGDMVGSSLVGGQGLASHARGMSLSPSASQIQMQHRANLMASLSYGHRQLSKQLSADSAESHSLNVNRYPPANYDQVHLHPHLFPEQPRVSPSSYSPSGGVGFPAAQQALKVPQLDQYPSFPPNAHQQQQHYTASALQQALLSPTPPDYSRHQQVPHILQGLLSPRHSLTGHTDMRLPQAEFAQLIKRRQQQQQQQEFQELFRHMSQGDAGSMGTSMGQNLSERQSLSLPYQSADTYHPQNSPQHLLKIRAQECIQQVPASVPPPQGYGHQPALFHSESMEEDCACEGNRDSFPDSKSSNTLTKGCHETPLLVNAGGHGDPESLLGTANPAQELGTHQYRHQPTPGFRNKVPSRESIVGNCMDRSSPGQAMQVPDHNGLGYPVRPSSSEHPRPRTLQRHHTIQNSDDAYVQLDNLPGMSLMAGKALSSARMSDAVLSQSSLMASQQLRDRDGEECGESLEGQEHPNLGDGSQHLNTSCYPSTCITDVLLSYKHPEVPFGMEQAGV
SIO_010081: SIK3
subclass of: SO_0000673
so part of: SIK3
location: complement(join(824987..825144,825246..825378,826105..826268,829793..830667,830915..831260,831850..831959,832623..832708,833023..833148,833932..834082,836751..836894,839897..839967,840478..840633,841300..841453,841903..842012,842122..842202,842749..842892,843030..843140,843481..843599,844318..844441,844704..844828,850443..850604,856213..856276,857508..857549))
location: region:824987-857549:-1
so has part: feature:857508-857549:-1:exon
so has part: feature:856213-856276:-1:exon
so has part: feature:850443-850604:-1:exon
so has part: feature:844704-844828:-1:exon
so has part: feature:844318-844441:-1:exon
so has part: feature:843481-843599:-1:exon
so has part: feature:843030-843140:-1:exon
so has part: feature:842749-842892:-1:exon
so has part: feature:842122-842202:-1:exon
so has part: feature:841903-842012:-1:exon
so has part: feature:841300-841453:-1:exon
so has part: feature:840478-840633:-1:exon
so has part: feature:839897-839967:-1:exon
so has part: feature:836751-836894:-1:exon
so has part: feature:833932-834082:-1:exon
so has part: feature:833023-833148:-1:exon
so has part: feature:832623-832708:-1:exon
so has part: feature:831850-831959:-1:exon
so has part: feature:830915-831260:-1:exon
so has part: feature:829793-830667:-1:exon
so has part: feature:826105-826268:-1:exon
so has part: feature:825246-825378:-1:exon
so has part: feature:824987-825144:-1:exon

XP_039420669.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:857508-857549:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:856213-856276:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:850443-850604:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:844704-844828:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:844318-844441:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:843481-843599:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:843030-843140:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:842749-842892:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:842122-842202:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:841903-842012:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:841300-841453:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:840478-840633:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:839897-839967:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:836751-836894:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:833932-834082:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:833023-833148:-1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:832623-832708:-1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:831850-831959:-1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:830915-831260:-1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:829793-830667:-1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:826105-826268:-1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:825246-825378:-1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:824987-825144:-1:exon

PAFAH1B2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PAFAH1B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 893406..902109
location: region:893406-902109:1
so has part: feature:893406-902109:1:exon
subclass of: SO_0000010

104692057
type: Gene
SIO_000068: ncbigene

position:893406:1
position: 893406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:902109:1
position: 902109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:893406-902109:1:exon

PAFAH1B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PAFAH1B2
product: platelet activating factor acetylhydrolase 1b catalytic subunit 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
transcript id: XM_010403787.3
SIO_010081: PAFAH1B2
subclass of: SO_0000673
so part of: PAFAH1B2
location: join(893406..893505,895889..895976,896508..896597,897415..897531,897774..897896,898460..902109)
location: region:893406-902109:1
so has part: feature:893406-893505:1:exon
so has part: feature:895889-895976:1:exon
so has part: feature:896508-896597:1:exon
so has part: feature:897415-897531:1:exon
so has part: feature:897774-897896:1:exon
so has part: feature:898460-902109:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:893406-893505:1:exon

position:893505:1
position: 893505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:895889-895976:1:exon

position:895889:1
position: 895889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:895976:1
position: 895976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:896508-896597:1:exon

position:896508:1
position: 896508
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:896597:1
position: 896597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:897415-897531:1:exon

position:897415:1
position: 897415
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:897531:1
position: 897531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:897774-897896:1:exon

position:897774:1
position: 897774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:897896:1
position: 897896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:898460-902109:1:exon

position:898460:1
position: 898460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PAFAH1B2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PAFAH1B2
product: platelet activating factor acetylhydrolase 1b catalytic subunit 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 ESTs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564738.1
SIO_010081: PAFAH1B2
subclass of: SO_0000673
so part of: PAFAH1B2
location: join(894741..894824,895889..895976,896508..896597,897415..897531,897774..897896,898460..902109)
location: region:894741-902109:1
so has part: feature:894741-894824:1:exon
so has part: feature:895889-895976:1:exon
so has part: feature:896508-896597:1:exon
so has part: feature:897415-897531:1:exon
so has part: feature:897774-897896:1:exon
so has part: feature:898460-902109:1:exon

position:894741:1
position: 894741
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:894741-894824:1:exon

position:894824:1
position: 894824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:895889-895976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:896508-896597:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:897415-897531:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:897774-897896:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:898460-902109:1:exon

PAFAH1B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PAFAH1B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: platelet-activating factor acetylhydrolase IB subunit alpha2 isoform X1
translation: MESRGKEPQPPNRMAMGDSNPAAVPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLLQQYEIWRELFSPLHALNFGIGGDTTGHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVRLINTQQPQAKVIVLGLLPRGEKPNPLRQKNAMVNHLLKASLPKLPNVQLLDVDVGFVHSDGTISYHDMFDFLHLTGGGYAKVCKPLHELIMQLLEETPEEKRAALA
SIO_010081: PAFAH1B2
subclass of: SO_0000673
so part of: PAFAH1B2
location: join(894793..894824,895889..895976,896508..896597,897415..897531,897774..897896,898460..898738)
location: region:894793-898738:1
so has part: feature:894793-894824:1:exon
so has part: feature:895889-895976:1:exon
so has part: feature:896508-896597:1:exon
so has part: feature:897415-897531:1:exon
so has part: feature:897774-897896:1:exon
so has part: feature:898460-898738:1:exon

XP_039420672.1
type: Protein
SIO_000068: ncbiprotein

position:894793:1
position: 894793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:898738:1
position: 898738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:894793-894824:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:895889-895976:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:896508-896597:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:897415-897531:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:897774-897896:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:898460-898738:1:exon

PAFAH1B2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PAFAH1B2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: platelet-activating factor acetylhydrolase IB subunit alpha2 isoform X2
translation: MAMGDSNPAAVPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLLQQYEIWRELFSPLHALNFGIGGDTTGHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVRLINTQQPQAKVIVLGLLPRGEKPNPLRQKNAMVNHLLKASLPKLPNVQLLDVDVGFVHSDGTISYHDMFDFLHLTGGGYAKVCKPLHELIMQLLEETPEEKRAALA
SIO_010081: PAFAH1B2
subclass of: SO_0000673
so part of: PAFAH1B2
location: join(895896..895976,896508..896597,897415..897531,897774..897896,898460..898738)
location: region:895896-898738:1
so has part: feature:895896-895976:1:exon
so has part: feature:896508-896597:1:exon
so has part: feature:897415-897531:1:exon
so has part: feature:897774-897896:1:exon
so has part: feature:898460-898738:1:exon

XP_010402089.1
type: Protein
SIO_000068: ncbiprotein

position:895896:1
position: 895896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:895896-895976:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:896508-896597:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:897415-897531:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:897774-897896:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:898460-898738:1:exon

SIDT2
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 903118..910122
location: region:903118-910122:1
so has part: feature:903118-910122:1:exon
subclass of: SO_0000010

104692172
type: Gene
SIO_000068: ncbigene

position:903118:1
position: 903118
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:910122:1
position: 910122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903118-910122:1:exon

SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
transcript id: XM_039564799.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903118..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,909067..909177,909260..909373,909464..910122)
location: region:903118-910122:1
so has part: feature:903118-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-910122:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:903118-903581:1:exon

position:903581:1
position: 903581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

position:903767:1
position: 903767
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:903888:1
position: 903888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

position:904033:1
position: 904033
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:904194:1
position: 904194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

position:904303:1
position: 904303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:904348:1
position: 904348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

position:904443:1
position: 904443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:904544:1
position: 904544
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

position:904622:1
position: 904622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:904705:1
position: 904705
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

position:904852:1
position: 904852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:904963:1
position: 904963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

position:905052:1
position: 905052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:905117:1
position: 905117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

position:905218:1
position: 905218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:905311:1
position: 905311
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

position:905441:1
position: 905441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:905496:1
position: 905496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

position:905760:1
position: 905760
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:905771:1
position: 905771
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

position:905910:1
position: 905910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:905981:1
position: 905981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

position:906063:1
position: 906063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:906137:1
position: 906137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

position:906329:1
position: 906329
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:906391:1
position: 906391
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

position:906778:1
position: 906778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:906899:1
position: 906899
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

position:906978:1
position: 906978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:907051:1
position: 907051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

position:907143:1
position: 907143
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:907209:1
position: 907209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

position:907343:1
position: 907343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:907416:1
position: 907416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

position:907537:1
position: 907537
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:907660:1
position: 907660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

position:907758:1
position: 907758
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:907875:1
position: 907875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

position:907950:1
position: 907950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:908086:1
position: 908086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

position:908164:1
position: 908164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:908272:1
position: 908272
reference: sequence
type: ForwardStrandPosition
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urn:…
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position:908349:1
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urn:…
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urn:…
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urn:…
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SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564797.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
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location: region:903118-910122:1
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urn:…
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urn:…
SIO_000300: 27
SIO_000628: feature:909464-910122:1:exon

SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 57 samples with support for all annotated introns
transcript id: XM_039564796.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903118..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..910122)
location: region:903118-910122:1
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urn:…
SIO_000300: 27
SIO_000628: feature:909464-910122:1:exon

SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
transcript id: XM_039564798.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903118..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905910..905981,906063..906137,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..910122)
location: region:903118-910122:1
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SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
transcript id: XM_039564800.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
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location: region:903118-909367:1
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position:909367:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
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urn:…
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position:908418:1
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reference: sequence
type: ForwardStrandPosition
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urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
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urn:…
SIO_000300: 26
SIO_000628: feature:909260-909367:1:exon

SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X7
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
transcript id: XM_039564801.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903118..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908418,908530..908576,908855..908946)
location: region:903118-908946:1
so has part: feature:903118-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908418:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908946:1:exon

position:908946:1
position: 908946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903118-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908349-908418:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:908855-908946:1:exon

SIDT2
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: SIDT2
product: SID1 transmembrane family member 2, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
transcript id: XM_039564795.1
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903155..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..910122)
location: region:903155-910122:1
so has part: feature:903155-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908960:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-910122:1:exon

position:903155:1
position: 903155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903155-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908349-908425:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:908855-908960:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:909260-909373:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:909464-910122:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X1
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTASLLGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGQEQFKRRTPSTPMRPLSIAMGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMYVDRMVLLVMGNIINWSLAAYGLIVRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIISTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDCVQRDKIYVF
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..909526)
location: region:903369-909526:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908960:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-909526:1:exon

XP_039420729.1
type: Protein
SIO_000068: ncbiprotein

position:903369:1
position: 903369
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:909526:1
position: 909526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908349-908425:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:908855-908960:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:909260-909373:1:exon

urn:…
SIO_000300: 28
SIO_000628: feature:909464-909526:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X3
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTASLLGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMYVDRMVLLVMGNIINWSLAAYGLIVRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIISTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDCVQRDKIYVF
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..909526)
location: region:903369-909526:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908960:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-909526:1:exon

XP_039420731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908349-908425:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908855-908960:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909260-909373:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:909464-909526:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X2
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGQEQFKRRTPSTPMRPLSIAMGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMYVDRMVLLVMGNIINWSLAAYGLIVRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIISTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDCVQRDKIYVF
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..909526)
location: region:903369-909526:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908960:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-909526:1:exon

XP_039420730.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908349-908425:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908855-908960:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909260-909373:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:909464-909526:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X4
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMYVDRMVLLVMGNIINWSLAAYGLIVRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIISTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDCVQRDKIYVF
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905910..905981,906063..906137,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,908855..908960,909067..909177,909260..909373,909464..909526)
location: region:903369-909526:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908960:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-909526:1:exon

XP_039420732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:908349-908425:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908855-908960:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:909260-909373:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909464-909526:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X5
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTASLLGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGQEQFKRRTPSTPMRPLSIAMGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMYVDRMVLLVMGNIINWSLSAAASASSSSPCSASSAPLWSGALPSSSSSRGSAPGRKRQLNPGSTTVTASCSTSLTTTTSGISSPPSPCSAPSWCC
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908425,908530..908576,909067..909177,909260..909373,909464..909473)
location: region:903369-909473:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908425:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909373:1:exon
so has part: feature:909464-909473:1:exon

XP_039420733.1
type: Protein
SIO_000068: ncbiprotein

position:909473:1
position: 909473
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908349-908425:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909260-909373:1:exon

urn:…
SIO_000300: 27
SIO_000628: feature:909464-909473:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X6
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTASLLGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGQEQFKRRTPSTPMRPLSIAMGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMTEWCSWSWETSSTGRSPQRRAHQAHPPALHHQHLCGLGLCPLLLLPGAQHLAENAS
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908418,908530..908576,909067..909177,909260..909273)
location: region:903369-909273:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908418:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:909067-909177:1:exon
so has part: feature:909260-909273:1:exon

XP_039420734.1
type: Protein
SIO_000068: ncbiprotein

position:909273:1
position: 909273
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908349-908418:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:909067-909177:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:909260-909273:1:exon

SIDT2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: SIDT2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: SID1 transmembrane family member 2 isoform X7
translation: MSGAGAAALAWALLAGALLSPPPVRPQLQLQPRRDRDVQEKEAQFNTTYIDWVDANLLNIYAFNHSVRRNRTEGVRVSVNVLSDHKDRPVLFVVRQKEAVVSFQVPLILRGLYQRKYAYQEVSRTLCQPQTKAEVETQHFYVDVSTLSLNTSYQLRVTRVENFVLRTNERFSFNATAAQPQYFKYEFPEEVDSVIVKVTSAMAFPCSVISIQDILCPVYDLDNNVAFIGMYQTMTKKAAITVQKKDFPSHSFYVVVVVKTEDEVCGGPLPYYPLSKGASPDEPVDQHNRQKTLEVMVSPAITSEAYVRSVLFCLGIFLSFYVLTLLIACWESCRQHKRKGLLAAMDSPNLDTASLLGHSRSIPDSFLNHGPYDSYGYGSFGNGSSSSTEGITDSLGSAEVSYNYVGQEQFKRRTPSTPMRPLSIAMGERSLENVAGRPRMDSLSSIEEDDYDTLADIDYDKNVIRTKQYLCVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYVLLGLLFLLIILQREINYNRALLRNDAHALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLALVIFFSVVGVVFGKGNTAFWIVFSVIHIVATLLLSTQLYYMGRWKLDSGILRRILHVLYTDCVRQCSGPMTEWCSWSWETSSTGR
SIO_010081: SIDT2
subclass of: SO_0000673
so part of: SIDT2
location: join(903369..903581,903767..903888,904033..904194,904303..904348,904443..904544,904622..904705,904852..904963,905052..905117,905218..905311,905441..905496,905760..905771,905910..905981,906063..906137,906329..906391,906778..906899,906978..907051,907143..907209,907343..907416,907537..907660,907758..907875,907950..908086,908164..908272,908349..908418,908530..908576,908855..908856)
location: region:903369-908856:1
so has part: feature:903369-903581:1:exon
so has part: feature:903767-903888:1:exon
so has part: feature:904033-904194:1:exon
so has part: feature:904303-904348:1:exon
so has part: feature:904443-904544:1:exon
so has part: feature:904622-904705:1:exon
so has part: feature:904852-904963:1:exon
so has part: feature:905052-905117:1:exon
so has part: feature:905218-905311:1:exon
so has part: feature:905441-905496:1:exon
so has part: feature:905760-905771:1:exon
so has part: feature:905910-905981:1:exon
so has part: feature:906063-906137:1:exon
so has part: feature:906329-906391:1:exon
so has part: feature:906778-906899:1:exon
so has part: feature:906978-907051:1:exon
so has part: feature:907143-907209:1:exon
so has part: feature:907343-907416:1:exon
so has part: feature:907537-907660:1:exon
so has part: feature:907758-907875:1:exon
so has part: feature:907950-908086:1:exon
so has part: feature:908164-908272:1:exon
so has part: feature:908349-908418:1:exon
so has part: feature:908530-908576:1:exon
so has part: feature:908855-908856:1:exon

XP_039420735.1
type: Protein
SIO_000068: ncbiprotein

position:908856:1
position: 908856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:903369-903581:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:903767-903888:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:904033-904194:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:904303-904348:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:904443-904544:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:904622-904705:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:904852-904963:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:905052-905117:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:905218-905311:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:905441-905496:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:905760-905771:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:905910-905981:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:906063-906137:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:906329-906391:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:906778-906899:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:906978-907051:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:907143-907209:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:907343-907416:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:907537-907660:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:907758-907875:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:907950-908086:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:908164-908272:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:908349-908418:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:908530-908576:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:908855-908856:1:exon

TAGLN
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: TAGLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 910887..913485
location: region:910887-913485:1
so has part: feature:910887-913485:1:exon
subclass of: SO_0000010

120411240
type: Gene
SIO_000068: ncbigene

position:910887:1
position: 910887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:913485:1
position: 913485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:910887-913485:1:exon

TAGLN
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: TAGLN
product: transgelin
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 77 samples with support for all annotated introns
transcript id: XM_039564809.1
SIO_010081: TAGLN
subclass of: SO_0000673
so part of: TAGLN
location: join(910887..910992,912445..912643,912745..912922,913010..913112,913339..913485)
location: region:910887-913485:1
so has part: feature:910887-910992:1:exon
so has part: feature:912445-912643:1:exon
so has part: feature:912745-912922:1:exon
so has part: feature:913010-913112:1:exon
so has part: feature:913339-913485:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:910887-910992:1:exon

position:910992:1
position: 910992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:912445-912643:1:exon

position:912445:1
position: 912445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:912643:1
position: 912643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:912745-912922:1:exon

position:912745:1
position: 912745
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:912922:1
position: 912922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:913010-913112:1:exon

position:913010:1
position: 913010
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:913112:1
position: 913112
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:913339-913485:1:exon

position:913339:1
position: 913339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TAGLN
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: TAGLN
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: transgelin
translation: MANKGPAYGMSRDVQSKIEKKYDDELEDRLVEWIVAQCGAAVGRPERGRLGFQVWLKNGIVLSRLVNSLYPDGSKPVKIPDAPPTMVFKQMEQIAQFLKAAEDYGVVKTDMFQTVDLFEAKDMAAVQRTLMALGSLAVTKNDGNYHGDPNWFMKKAQEHKREFTESQLKEGKNIIGLQMGTNKGASQAGMSYGRPRQIIS
SIO_010081: TAGLN
subclass of: SO_0000673
so part of: TAGLN
location: join(912464..912643,912745..912922,913010..913112,913339..913480)
location: region:912464-913480:1
so has part: feature:912464-912643:1:exon
so has part: feature:912745-912922:1:exon
so has part: feature:913010-913112:1:exon
so has part: feature:913339-913480:1:exon

XP_039420743.1
type: Protein
SIO_000068: ncbiprotein

position:912464:1
position: 912464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:913480:1
position: 913480
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:912464-912643:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:912745-912922:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:913010-913112:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:913339-913480:1:exon

PCSK7
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: PCSK7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(914316..927754)
location: region:914316-927754:-1
so has part: feature:914316-927754:-1:exon
subclass of: SO_0000010

104692059
type: Gene
SIO_000068: ncbigene

position:914316:-1
position: 914316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:927754:-1
position: 927754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:914316-927754:-1:exon

PCSK7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PCSK7
product: proprotein convertase subtilisin/kexin type 7, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
transcript id: XM_039564802.1
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(914316..915545,915697..915814,916082..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926705,927656..927753))
location: region:914316-927753:-1
so has part: feature:927656-927753:-1:exon
so has part: feature:926226-926705:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916082-916175:-1:exon
so has part: feature:915697-915814:-1:exon
so has part: feature:914316-915545:-1:exon

position:927753:-1
position: 927753
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927656-927753:-1:exon

position:927656:-1
position: 927656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:926226-926705:-1:exon

position:926226:-1
position: 926226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:926705:-1
position: 926705
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:925687-925821:-1:exon

position:925687:-1
position: 925687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:925821:-1
position: 925821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:925111-925276:-1:exon

position:925111:-1
position: 925111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:925276:-1
position: 925276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:924172-924262:-1:exon

position:924172:-1
position: 924172
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:924262:-1
position: 924262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:923562-923616:-1:exon

position:923562:-1
position: 923562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:923616:-1
position: 923616
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:922331-922469:-1:exon

position:922331:-1
position: 922331
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:922469:-1
position: 922469
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:921642-921742:-1:exon

position:921642:-1
position: 921642
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:921742:-1
position: 921742
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:919550-919717:-1:exon

position:919550:-1
position: 919550
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:919717:-1
position: 919717
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:918408-918515:-1:exon

position:918408:-1
position: 918408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:918515:-1
position: 918515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:917422-917524:-1:exon

position:917422:-1
position: 917422
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:917524:-1
position: 917524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:916502-916658:-1:exon

position:916502:-1
position: 916502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916658:-1
position: 916658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:916313-916407:-1:exon

position:916313:-1
position: 916313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916407:-1
position: 916407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:916082-916175:-1:exon

position:916082:-1
position: 916082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:916175:-1
position: 916175
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:915697-915814:-1:exon

position:915697:-1
position: 915697
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:915814:-1
position: 915814
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:914316-915545:-1:exon

position:915545:-1
position: 915545
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

PCSK7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PCSK7
product: proprotein convertase subtilisin/kexin type 7, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
transcript id: XM_019288606.2
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(914316..915545,915697..915814,916082..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926705,926812..927113))
location: region:914316-927113:-1
so has part: feature:926812-927113:-1:exon
so has part: feature:926226-926705:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916082-916175:-1:exon
so has part: feature:915697-915814:-1:exon
so has part: feature:914316-915545:-1:exon

position:927113:-1
position: 927113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:926812-927113:-1:exon

position:926812:-1
position: 926812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:926226-926705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:916082-916175:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:915697-915814:-1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:914316-915545:-1:exon

PCSK7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PCSK7
product: proprotein convertase subtilisin/kexin type 7, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
transcript id: XM_039564803.1
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(914316..915545,915697..915814,916082..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..927113))
location: region:914316-927113:-1
so has part: feature:926226-927113:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916082-916175:-1:exon
so has part: feature:915697-915814:-1:exon
so has part: feature:914316-915545:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:926226-927113:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916082-916175:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:915697-915814:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:914316-915545:-1:exon

PCSK7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PCSK7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proprotein convertase subtilisin/kexin type 7 isoform X1
translation: MPHWRRGAPLWSAGMEATLCIHTCLWLSAAWIPLASPAGPACGGQRAPDTEGRHGKLTWAVSLDAPEEELEQRAEELARTAGLVNMGRVGELKGHYLFAYQPDGHAVTEHEAIRRSVDTLFAQHDSVRWHSEQKLLKRSKRSLHFNDPKYPQQWHLNNRKSPGKDINVTGVWERNVTGRGVTVVVVDDGVEHTIKDIQPNYSPEGSYDLNSNDPDPMPHPDEENGNHHGTRCAGEIAAVPNNSFCTVGVAYGSRIAGIRVLDGPLTDSMEAIAFNKHYQINDIYSCSWGPDDDGKTVDGPHQLGKAALQHGVIAGRRGFGSIFVVASGNGGQHSDNCNYDGYANSIYTVTIGAVDETGSMPFYAEECASMLAVTFSGGDKMMRSIVTTDWDLQKGTGCTEGHTGTSAAAPLAAGMIALMLQVRPCLTWRDVQHVIVFTATKYEDRRAKWDTNQAGFSHSHQHGFGLLNAWRLVNAAKIWESVPYLASYVGPVLKEGRSIPLLPQELEVAWNVTPADLELSGMRTLEHVAVTVTITHPRRGNLEIRLFCPSGMMSLIGTTRSMDSDPNGFSDWTFSTVRCWGEEAQGTYRLLIRDIGDESLRPGTLKHWQLTLYGSSWSPAEMKERQRLLEEAMSGQYLSGDFSLPCPPGLDIPEEQRYTITANTLKTLLLLGCFAVFWTFYYMLEVCLTRNEVGLDLACSSPTSCRWYQQGGKHRALESGLEMESVPLYREKDMEEAEMECEHLEPARDREEGSWTPTHPKLSSNGRAGSFHEAAPTGTGFLGREASTELLMEDREHQPC
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(915141..915545,915697..915814,916082..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926693))
location: region:915141-926693:-1
so has part: feature:926226-926693:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916082-916175:-1:exon
so has part: feature:915697-915814:-1:exon
so has part: feature:915141-915545:-1:exon

XP_019144151.1
type: Protein
SIO_000068: ncbiprotein

position:915141:-1
position: 915141
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:926693:-1
position: 926693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:926226-926693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916082-916175:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:915697-915814:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:915141-915545:-1:exon

PCSK7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PCSK7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proprotein convertase subtilisin/kexin type 7 isoform X1
translation: MPHWRRGAPLWSAGMEATLCIHTCLWLSAAWIPLASPAGPACGGQRAPDTEGRHGKLTWAVSLDAPEEELEQRAEELARTAGLVNMGRVGELKGHYLFAYQPDGHAVTEHEAIRRSVDTLFAQHDSVRWHSEQKLLKRSKRSLHFNDPKYPQQWHLNNRKSPGKDINVTGVWERNVTGRGVTVVVVDDGVEHTIKDIQPNYSPEGSYDLNSNDPDPMPHPDEENGNHHGTRCAGEIAAVPNNSFCTVGVAYGSRIAGIRVLDGPLTDSMEAIAFNKHYQINDIYSCSWGPDDDGKTVDGPHQLGKAALQHGVIAGRRGFGSIFVVASGNGGQHSDNCNYDGYANSIYTVTIGAVDETGSMPFYAEECASMLAVTFSGGDKMMRSIVTTDWDLQKGTGCTEGHTGTSAAAPLAAGMIALMLQVRPCLTWRDVQHVIVFTATKYEDRRAKWDTNQAGFSHSHQHGFGLLNAWRLVNAAKIWESVPYLASYVGPVLKEGRSIPLLPQELEVAWNVTPADLELSGMRTLEHVAVTVTITHPRRGNLEIRLFCPSGMMSLIGTTRSMDSDPNGFSDWTFSTVRCWGEEAQGTYRLLIRDIGDESLRPGTLKHWQLTLYGSSWSPAEMKERQRLLEEAMSGQYLSGDFSLPCPPGLDIPEEQRYTITANTLKTLLLLGCFAVFWTFYYMLEVCLTRNEVGLDLACSSPTSCRWYQQGGKHRALESGLEMESVPLYREKDMEEAEMECEHLEPARDREEGSWTPTHPKLSSNGRAGSFHEAAPTGTGFLGREASTELLMEDREHQPC
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(915141..915545,915697..915814,916082..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926693))
location: region:915141-926693:-1
so has part: feature:926226-926693:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916082-916175:-1:exon
so has part: feature:915697-915814:-1:exon
so has part: feature:915141-915545:-1:exon

XP_039420736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:926226-926693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916082-916175:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:915697-915814:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:915141-915545:-1:exon

PCSK7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PCSK7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proprotein convertase subtilisin/kexin type 7 isoform X1
translation: MPHWRRGAPLWSAGMEATLCIHTCLWLSAAWIPLASPAGPACGGQRAPDTEGRHGKLTWAVSLDAPEEELEQRAEELARTAGLVNMGRVGELKGHYLFAYQPDGHAVTEHEAIRRSVDTLFAQHDSVRWHSEQKLLKRSKRSLHFNDPKYPQQWHLNNRKSPGKDINVTGVWERNVTGRGVTVVVVDDGVEHTIKDIQPNYSPEGSYDLNSNDPDPMPHPDEENGNHHGTRCAGEIAAVPNNSFCTVGVAYGSRIAGIRVLDGPLTDSMEAIAFNKHYQINDIYSCSWGPDDDGKTVDGPHQLGKAALQHGVIAGRRGFGSIFVVASGNGGQHSDNCNYDGYANSIYTVTIGAVDETGSMPFYAEECASMLAVTFSGGDKMMRSIVTTDWDLQKGTGCTEGHTGTSAAAPLAAGMIALMLQVRPCLTWRDVQHVIVFTATKYEDRRAKWDTNQAGFSHSHQHGFGLLNAWRLVNAAKIWESVPYLASYVGPVLKEGRSIPLLPQELEVAWNVTPADLELSGMRTLEHVAVTVTITHPRRGNLEIRLFCPSGMMSLIGTTRSMDSDPNGFSDWTFSTVRCWGEEAQGTYRLLIRDIGDESLRPGTLKHWQLTLYGSSWSPAEMKERQRLLEEAMSGQYLSGDFSLPCPPGLDIPEEQRYTITANTLKTLLLLGCFAVFWTFYYMLEVCLTRNEVGLDLACSSPTSCRWYQQGGKHRALESGLEMESVPLYREKDMEEAEMECEHLEPARDREEGSWTPTHPKLSSNGRAGSFHEAAPTGTGFLGREASTELLMEDREHQPC
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(915141..915545,915697..915814,916082..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926693))
location: region:915141-926693:-1
so has part: feature:926226-926693:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916082-916175:-1:exon
so has part: feature:915697-915814:-1:exon
so has part: feature:915141-915545:-1:exon

XP_039420737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:926226-926693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916082-916175:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:915697-915814:-1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:915141-915545:-1:exon

PCSK7
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: PCSK7
product: proprotein convertase subtilisin/kexin type 7, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
transcript id: XM_039564805.1
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(916078..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926705,927656..927754))
location: region:916078-927754:-1
so has part: feature:927656-927754:-1:exon
so has part: feature:926226-926705:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916078-916175:-1:exon

position:916078:-1
position: 916078
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927656-927754:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:926226-926705:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:916078-916175:-1:exon

PCSK7
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: PCSK7
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: proprotein convertase subtilisin/kexin type 7 isoform X2
translation: MPHWRRGAPLWSAGMEATLCIHTCLWLSAAWIPLASPAGPACGGQRAPDTEGRHGKLTWAVSLDAPEEELEQRAEELARTAGLVNMGRVGELKGHYLFAYQPDGHAVTEHEAIRRSVDTLFAQHDSVRWHSEQKLLKRSKRSLHFNDPKYPQQWHLNNRKSPGKDINVTGVWERNVTGRGVTVVVVDDGVEHTIKDIQPNYSPEGSYDLNSNDPDPMPHPDEENGNHHGTRCAGEIAAVPNNSFCTVGVAYGSRIAGIRVLDGPLTDSMEAIAFNKHYQINDIYSCSWGPDDDGKTVDGPHQLGKAALQHGVIAGRRGFGSIFVVASGNGGQHSDNCNYDGYANSIYTVTIGAVDETGSMPFYAEECASMLAVTFSGGDKMMRSIVTTDWDLQKGTGCTEGHTGTSAAAPLAAGMIALMLQVRPCLTWRDVQHVIVFTATKYEDRRAKWDTNQAGFSHSHQHGFGLLNAWRLVNAAKIWESVPYLASYVGPVLKEGRSIPLLPQELEVAWNVTPADLELSGMRTLEHVAVTVTITHPRRGNLEIRLFCPSGMMSLIGTTRSMDSDPNGFSDWTFSTVRCWGEEAQGTYRLLIRDIGDESLRPGTLKHWQLTLYGSSWSPAEMKERQR
SIO_010081: PCSK7
subclass of: SO_0000673
so part of: PCSK7
location: complement(join(916078..916175,916313..916407,916502..916658,917422..917524,918408..918515,919550..919717,921642..921742,922331..922469,923562..923616,924172..924262,925111..925276,925687..925821,926226..926693))
location: region:916078-926693:-1
so has part: feature:926226-926693:-1:exon
so has part: feature:925687-925821:-1:exon
so has part: feature:925111-925276:-1:exon
so has part: feature:924172-924262:-1:exon
so has part: feature:923562-923616:-1:exon
so has part: feature:922331-922469:-1:exon
so has part: feature:921642-921742:-1:exon
so has part: feature:919550-919717:-1:exon
so has part: feature:918408-918515:-1:exon
so has part: feature:917422-917524:-1:exon
so has part: feature:916502-916658:-1:exon
so has part: feature:916313-916407:-1:exon
so has part: feature:916078-916175:-1:exon

XP_039420739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:926226-926693:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:925687-925821:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:925111-925276:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:924172-924262:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:923562-923616:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:922331-922469:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:921642-921742:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:919550-919717:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:918408-918515:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:917422-917524:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:916502-916658:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:916313-916407:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:916078-916175:-1:exon

RNF214
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: RNF214
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 927948..935046
location: region:927948-935046:1
so has part: feature:927948-935046:1:exon
subclass of: SO_0000010

104692060
type: Gene
SIO_000068: ncbigene

position:927948:1
position: 927948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:935046:1
position: 935046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927948-935046:1:exon

RNF214
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: RNF214
product: ring finger protein 214
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564806.1
SIO_010081: RNF214
subclass of: SO_0000673
so part of: RNF214
location: join(927948..928232,928855..928914,929122..929262,929531..929670,930223..930291,931082..931178,931409..931497,931896..931986,932197..932295,932496..932872,933278..933413,933643..933750,934069..934164,934791..935046)
location: region:927948-935046:1
so has part: feature:927948-928232:1:exon
so has part: feature:928855-928914:1:exon
so has part: feature:929122-929262:1:exon
so has part: feature:929531-929670:1:exon
so has part: feature:930223-930291:1:exon
so has part: feature:931082-931178:1:exon
so has part: feature:931409-931497:1:exon
so has part: feature:931896-931986:1:exon
so has part: feature:932197-932295:1:exon
so has part: feature:932496-932872:1:exon
so has part: feature:933278-933413:1:exon
so has part: feature:933643-933750:1:exon
so has part: feature:934069-934164:1:exon
so has part: feature:934791-935046:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:927948-928232:1:exon

position:928232:1
position: 928232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:928855-928914:1:exon

position:928855:1
position: 928855
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:928914:1
position: 928914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:929122-929262:1:exon

position:929122:1
position: 929122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:929262:1
position: 929262
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:929531-929670:1:exon

position:929531:1
position: 929531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:929670:1
position: 929670
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:930223-930291:1:exon

position:930223:1
position: 930223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:930291:1
position: 930291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:931082-931178:1:exon

position:931082:1
position: 931082
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:931178:1
position: 931178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:931409-931497:1:exon

position:931409:1
position: 931409
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:931497:1
position: 931497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:931896-931986:1:exon

position:931896:1
position: 931896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:931986:1
position: 931986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:932197-932295:1:exon

position:932197:1
position: 932197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:932295:1
position: 932295
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:932496-932872:1:exon

position:932496:1
position: 932496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:932872:1
position: 932872
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:933278-933413:1:exon

position:933278:1
position: 933278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:933413:1
position: 933413
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:933643-933750:1:exon

position:933643:1
position: 933643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:933750:1
position: 933750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:934069-934164:1:exon

position:934069:1
position: 934069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:934164:1
position: 934164
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:934791-935046:1:exon

position:934791:1
position: 934791
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RNF214
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: RNF214
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: RING finger protein 214
translation: MGPGWEQGRGRGAALTDVPFPRSGSPLSAPESPGEPGPGGEADPAAAPGPGGDAEPGAGGAEAAGQSGAAAEEPDEEAAPARPSQNIAVQTDFKAADADVNTDQDIEKNLDKMMSERALLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKMEKEKKEFLQKEQDLKAEIEKLCEKGRRLLKEQEEKENKIASLIAEQSDEKQLWEMELDKLKNQHNEINRNILEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSAPPTLETMRPKQEWEMRLNRIRMTKQSVRDQFNDHIQMVRNGTKLSSLPQIPTPTLPPPPSETDFMLTAFQPNPSLTPRLPFPIGPVPVPMVMPSADPRALSFPLLNPAMSRPNQPSPPLPASQGRSSPVVASLIGTHSPHMPPAASIPPPPGLGGVNVPPEFHRPQPADKLEKLLEKLLTRFPQCNKAQLTNILQQIKTARRTMAGLTMEELNQLVAAKLAEQQERAAVGAQPLGRIRAPMFSAPLPQISTPMFLPPAQVAYPGTASHTPAACKLCLMCQKLVQPGDLHPMACSHVLHKECIKFWAQTNTNDTCPFCPSLK
SIO_010081: RNF214
subclass of: SO_0000673
so part of: RNF214
location: join(927963..928232,928855..928914,929122..929262,929531..929670,930223..930291,931082..931178,931409..931497,931896..931986,932197..932295,932496..932872,933278..933413,933643..933750,934069..934164,934791..934856)
location: region:927963-934856:1
so has part: feature:927963-928232:1:exon
so has part: feature:928855-928914:1:exon
so has part: feature:929122-929262:1:exon
so has part: feature:929531-929670:1:exon
so has part: feature:930223-930291:1:exon
so has part: feature:931082-931178:1:exon
so has part: feature:931409-931497:1:exon
so has part: feature:931896-931986:1:exon
so has part: feature:932197-932295:1:exon
so has part: feature:932496-932872:1:exon
so has part: feature:933278-933413:1:exon
so has part: feature:933643-933750:1:exon
so has part: feature:934069-934164:1:exon
so has part: feature:934791-934856:1:exon

XP_039420740.1
type: Protein
SIO_000068: ncbiprotein

position:927963:1
position: 927963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:934856:1
position: 934856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:927963-928232:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:928855-928914:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:929122-929262:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:929531-929670:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:930223-930291:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:931082-931178:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:931409-931497:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:931896-931986:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:932197-932295:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:932496-932872:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:933278-933413:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:933643-933750:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:934069-934164:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:934791-934856:1:exon

BACE1
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: BACE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(935289..943382)
location: region:935289-943382:-1
so has part: feature:935289-943382:-1:exon
subclass of: SO_0000010

104692173
type: Gene
SIO_000068: ncbigene

position:935289:-1
position: 935289
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:943382:-1
position: 943382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:935289-943382:-1:exon

BACE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: BACE1
product: beta-secretase 1, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
transcript id: XM_039564808.1
SIO_010081: BACE1
subclass of: SO_0000673
so part of: BACE1
location: complement(join(935289..937401,937756..938028,938108..938279,938409..938558,938700..938801,938926..939060,939150..939287,939474..939690,939849..939937,943068..943382))
location: region:935289-943382:-1
so has part: feature:943068-943382:-1:exon
so has part: feature:939849-939937:-1:exon
so has part: feature:939474-939690:-1:exon
so has part: feature:939150-939287:-1:exon
so has part: feature:938926-939060:-1:exon
so has part: feature:938700-938801:-1:exon
so has part: feature:938409-938558:-1:exon
so has part: feature:938108-938279:-1:exon
so has part: feature:937756-938028:-1:exon
so has part: feature:935289-937401:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:943068-943382:-1:exon

position:943068:-1
position: 943068
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:939849-939937:-1:exon

position:939849:-1
position: 939849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:939937:-1
position: 939937
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:939474-939690:-1:exon

position:939474:-1
position: 939474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:939690:-1
position: 939690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:939150-939287:-1:exon

position:939150:-1
position: 939150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:939287:-1
position: 939287
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:938926-939060:-1:exon

position:938926:-1
position: 938926
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:939060:-1
position: 939060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:938700-938801:-1:exon

position:938700:-1
position: 938700
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:938801:-1
position: 938801
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:938409-938558:-1:exon

position:938409:-1
position: 938409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:938558:-1
position: 938558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:938108-938279:-1:exon

position:938108:-1
position: 938108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:938279:-1
position: 938279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:937756-938028:-1:exon

position:937756:-1
position: 937756
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:938028:-1
position: 938028
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:935289-937401:-1:exon

position:937401:-1
position: 937401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

BACE1
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: BACE1
product: beta-secretase 1, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
transcript id: XM_039564807.1
SIO_010081: BACE1
subclass of: SO_0000673
so part of: BACE1
location: complement(join(935289..938028,938108..938279,938409..938558,938700..938801,938926..939060,939150..939287,939474..939690,939849..939937,943068..943382))
location: region:935289-943382:-1
so has part: feature:943068-943382:-1:exon
so has part: feature:939849-939937:-1:exon
so has part: feature:939474-939690:-1:exon
so has part: feature:939150-939287:-1:exon
so has part: feature:938926-939060:-1:exon
so has part: feature:938700-938801:-1:exon
so has part: feature:938409-938558:-1:exon
so has part: feature:938108-938279:-1:exon
so has part: feature:935289-938028:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:943068-943382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:939849-939937:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:939474-939690:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:939150-939287:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:938926-939060:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:938700-938801:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:938409-938558:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:938108-938279:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:935289-938028:-1:exon

BACE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: BACE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-secretase 1
translation: MAPAWPWLLLWLGVLRALPAPPRIRLPLRGGAAPPSGLRQRRAPLDTEPDSAGSFVEMIDNLRGKSGQGYYVEMTVGSPPQKLNILVDTGSSNFAVGAAPHPFLRRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVTIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTRVPNIFSLQLCGTGFSPNETEAVASVGGSMIIGGIDRSLYVGDIWYTPIRKEWYYEVIIVKLEVNGQDLNMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKTASSTEKFPDGFWLGEQLVCWQVGTTPWHIFPVLSLYLMGETTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVDGPHLHSNMEDCGYNIPQTDESTLMTIAYVMAAICALFMLPLCLMVFQWRCFRCLRRDHDDFADDISLLK
SIO_010081: BACE1
subclass of: SO_0000673
so part of: BACE1
location: complement(join(937787..938028,938108..938279,938409..938558,938700..938801,938926..939060,939150..939287,939474..939690,939849..939937,943068..943313))
location: region:937787-943313:-1
so has part: feature:943068-943313:-1:exon
so has part: feature:939849-939937:-1:exon
so has part: feature:939474-939690:-1:exon
so has part: feature:939150-939287:-1:exon
so has part: feature:938926-939060:-1:exon
so has part: feature:938700-938801:-1:exon
so has part: feature:938409-938558:-1:exon
so has part: feature:938108-938279:-1:exon
so has part: feature:937787-938028:-1:exon

XP_039420741.1
type: Protein
SIO_000068: ncbiprotein

position:937787:-1
position: 937787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:943313:-1
position: 943313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:943068-943313:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:939849-939937:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:939474-939690:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:939150-939287:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:938926-939060:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:938700-938801:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:938409-938558:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:938108-938279:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:937787-938028:-1:exon

BACE1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: BACE1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: beta-secretase 1
translation: MAPAWPWLLLWLGVLRALPAPPRIRLPLRGGAAPPSGLRQRRAPLDTEPDSAGSFVEMIDNLRGKSGQGYYVEMTVGSPPQKLNILVDTGSSNFAVGAAPHPFLRRYYQRQLSSTYRDLRKGVYVPYTQGKWEGELGTDLVTIPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTRVPNIFSLQLCGTGFSPNETEAVASVGGSMIIGGIDRSLYVGDIWYTPIRKEWYYEVIIVKLEVNGQDLNMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKTASSTEKFPDGFWLGEQLVCWQVGTTPWHIFPVLSLYLMGETTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVDGPHLHSNMEDCGYNIPQTDESTLMTIAYVMAAICALFMLPLCLMVFQWRCFRCLRRDHDDFADDISLLK
SIO_010081: BACE1
subclass of: SO_0000673
so part of: BACE1
location: complement(join(937787..938028,938108..938279,938409..938558,938700..938801,938926..939060,939150..939287,939474..939690,939849..939937,943068..943313))
location: region:937787-943313:-1
so has part: feature:943068-943313:-1:exon
so has part: feature:939849-939937:-1:exon
so has part: feature:939474-939690:-1:exon
so has part: feature:939150-939287:-1:exon
so has part: feature:938926-939060:-1:exon
so has part: feature:938700-938801:-1:exon
so has part: feature:938409-938558:-1:exon
so has part: feature:938108-938279:-1:exon
so has part: feature:937787-938028:-1:exon

XP_039420742.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:943068-943313:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:939849-939937:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:939474-939690:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:939150-939287:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:938926-939060:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:938700-938801:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:938409-938558:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:938108-938279:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:937787-938028:-1:exon

CEP164
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CEP164
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 943738..973477
location: region:943738-973477:1
so has part: feature:943738-973477:1:exon
subclass of: SO_0000010

104692061
type: Gene
SIO_000068: ncbigene

position:943738:1
position: 943738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:973477:1
position: 973477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:943738-973477:1:exon

CEP164
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CEP164
product: centrosomal protein 164, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
transcript id: XM_039564789.1
SIO_010081: CEP164
subclass of: SO_0000673
so part of: CEP164
location: join(943738..943809,945522..945611,945948..946059,946381..946618,947056..947214,947867..947995,948328..948405,950218..950337,952159..952590,953948..954031,954929..955012,958123..958208,959695..959835,961442..961663,962781..962915,963115..963331,963914..963991,964231..964362,964641..964763,964896..965039,965231..965314,965708..965776,966025..966203,966693..966819,967220..967284,967444..967651,968016..968123,968816..968930,969432..969779,970170..970236,970504..970620,971438..973477)
location: region:943738-973477:1
so has part: feature:943738-943809:1:exon
so has part: feature:945522-945611:1:exon
so has part: feature:945948-946059:1:exon
so has part: feature:946381-946618:1:exon
so has part: feature:947056-947214:1:exon
so has part: feature:947867-947995:1:exon
so has part: feature:948328-948405:1:exon
so has part: feature:950218-950337:1:exon
so has part: feature:952159-952590:1:exon
so has part: feature:953948-954031:1:exon
so has part: feature:954929-955012:1:exon
so has part: feature:958123-958208:1:exon
so has part: feature:959695-959835:1:exon
so has part: feature:961442-961663:1:exon
so has part: feature:962781-962915:1:exon
so has part: feature:963115-963331:1:exon
so has part: feature:963914-963991:1:exon
so has part: feature:964231-964362:1:exon
so has part: feature:964641-964763:1:exon
so has part: feature:964896-965039:1:exon
so has part: feature:965231-965314:1:exon
so has part: feature:965708-965776:1:exon
so has part: feature:966025-966203:1:exon
so has part: feature:966693-966819:1:exon
so has part: feature:967220-967284:1:exon
so has part: feature:967444-967651:1:exon
so has part: feature:968016-968123:1:exon
so has part: feature:968816-968930:1:exon
so has part: feature:969432-969779:1:exon
so has part: feature:970170-970236:1:exon
so has part: feature:970504-970620:1:exon
so has part: feature:971438-973477:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:943738-943809:1:exon

position:943809:1
position: 943809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:945522-945611:1:exon

position:945522:1
position: 945522
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:945611:1
position: 945611
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:945948-946059:1:exon

position:945948:1
position: 945948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:946059:1
position: 946059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:946381-946618:1:exon

position:946381:1
position: 946381
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:946618:1
position: 946618
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:947056-947214:1:exon

position:947056:1
position: 947056
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:947214:1
position: 947214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:947867-947995:1:exon

position:947867:1
position: 947867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:947995:1
position: 947995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:948328-948405:1:exon

position:948328:1
position: 948328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:948405:1
position: 948405
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:950218-950337:1:exon

position:950218:1
position: 950218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:950337:1
position: 950337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:952159-952590:1:exon

position:952159:1
position: 952159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:952590:1
position: 952590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:953948-954031:1:exon

position:953948:1
position: 953948
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:954031:1
position: 954031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:954929-955012:1:exon

position:954929:1
position: 954929
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:955012:1
position: 955012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:958123-958208:1:exon

position:958123:1
position: 958123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:958208:1
position: 958208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:959695-959835:1:exon

position:959695:1
position: 959695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:959835:1
position: 959835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:961442-961663:1:exon

position:961442:1
position: 961442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:961663:1
position: 961663
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:962781-962915:1:exon

position:962781:1
position: 962781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:962915:1
position: 962915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:963115-963331:1:exon

position:963115:1
position: 963115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:963331:1
position: 963331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:963914-963991:1:exon

position:963914:1
position: 963914
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:963991:1
position: 963991
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 18
SIO_000628: feature:964231-964362:1:exon

position:964231:1
position: 964231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:964362:1
position: 964362
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 19
SIO_000628: feature:964641-964763:1:exon

position:964641:1
position: 964641
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:964763:1
position: 964763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 20
SIO_000628: feature:964896-965039:1:exon

position:964896:1
position: 964896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:965039:1
position: 965039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 21
SIO_000628: feature:965231-965314:1:exon

position:965231:1
position: 965231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:965314:1
position: 965314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 22
SIO_000628: feature:965708-965776:1:exon

position:965708:1
position: 965708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:965776:1
position: 965776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 23
SIO_000628: feature:966025-966203:1:exon

position:966025:1
position: 966025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:966203:1
position: 966203
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 24
SIO_000628: feature:966693-966819:1:exon

position:966693:1
position: 966693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:966819:1
position: 966819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 25
SIO_000628: feature:967220-967284:1:exon

position:967220:1
position: 967220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:967284:1
position: 967284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 26
SIO_000628: feature:967444-967651:1:exon

position:967444:1
position: 967444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:967651:1
position: 967651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 27
SIO_000628: feature:968016-968123:1:exon

position:968016:1
position: 968016
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:968123:1
position: 968123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 28
SIO_000628: feature:968816-968930:1:exon

position:968816:1
position: 968816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:968930:1
position: 968930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 29
SIO_000628: feature:969432-969779:1:exon

position:969432:1
position: 969432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:969779:1
position: 969779
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 30
SIO_000628: feature:970170-970236:1:exon

position:970170:1
position: 970170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:970236:1
position: 970236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 31
SIO_000628: feature:970504-970620:1:exon

position:970504:1
position: 970504
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:970620:1
position: 970620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 32
SIO_000628: feature:971438-973477:1:exon

position:971438:1
position: 971438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

CEP164
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 932674
gene: CEP164
product: centrosomal protein 164, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transcript id: XM_039564791.1
SIO_010081: CEP164
subclass of: SO_0000673
so part of: CEP164
location: join(943746..943816,945522..945611,945948..946059,946381..946618,947056..947214,947867..947995,948328..948405,950218..950337,952159..952590,953948..954031,954929..955012,958123..958208,959695..959835,961442..961663,962781..962915,963115..963331,963914..963991,964231..964362,964641..964763,964896..965039,965231..965314,965708..965776,966025..966203,966693..966819,967220..967284,967444..967651,968016..968123,968816..968930,969432..969779,970170..970236,970504..970620,971438..973477)
location: region:943746-973477:1
so has part: feature:943746-943816:1:exon
so has part: feature:945522-945611:1:exon
so has part: feature:945948-946059:1:exon
so has part: feature:946381-946618:1:exon
so has part: feature:947056-947214:1:exon
so has part: feature:947867-947995:1:exon
so has part: feature:948328-948405:1:exon
so has part: feature:950218-950337:1:exon
so has part: feature:952159-952590:1:exon
so has part: feature:953948-954031:1:exon
so has part: feature:954929-955012:1:exon
so has part: feature:958123-958208:1:exon
so has part: feature:959695-959835:1:exon
so has part: feature:961442-961663:1:exon
so has part: feature:962781-962915:1:exon
so has part: feature:963115-963331:1:exon
so has part: feature:963914-963991:1:exon
so has part: feature:964231-964362:1:exon
so has part: feature:964641-964763:1:exon
so has part: feature:964896-965039:1:exon
so has part: feature:965231-965314:1:exon
so has part: feature:965708-965776:1:exon
so has part: feature:966025-966203:1:exon
so has part: feature:966693-966819:1:exon
so has part: feature:967220-967284:1:exon
so has part: feature:967444-967651:1:exon
so has part: feature:968016-968123:1:exon
so has part: feature:968816-968930:1:exon
so has part: feature:969432-969779:1:exon
so has part: feature:970170-970236:1:exon
so has part: feature:970504-970620:1:exon
so has part: feature:971438-973477:1:exon

position:943746:1
position: 943746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:943746-943816:1:exon

position:943816:1
position: 943816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:945522-945611:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:945948-946059:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:946381-946618:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:947056-947214:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:947867-947995:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:948328-948405:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:950218-950337:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:952159-952590:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:953948-954031:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:954929-955012:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:958123-958208:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:959695-959835:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:961442-961663:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:962781-962915:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:963115-963331:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:963914-963991:1:exon

urn:…
SIO_000300: 18
SIO_000628: feature:964231-964362:1:exon

urn:…
SIO_000300: 19
SIO_000628: feature:964641-964763:1:exon

urn:…
SIO_000300: 20
SIO_000628: feature:964896-965039:1:exon

urn:…
SIO_000300: 21
SIO_000628: feature:965231-965314:1:exon

urn:…
SIO_000300: 22
SIO_000628: feature:965708-965776:1:exon

urn:…
SIO_000300: 23
SIO_000628: feature:966025-966203:1:exon

urn:…
SIO_000300: 24
SIO_000628: feature:966693-966819:1:exon

urn:…
SIO_000300: 25
SIO_000628: feature:967220-967284:1:exon

urn:…
SIO_000300: 26
SIO_000628: feature:967444-967651:1:exon