Corvus cornix cornix isolate S_Up_H32 mitochondrion, complete genome.
type: Entry
definition: Corvus cornix cornix isolate S_Up_H32 mitochondrion, complete genome.
sequence version: NC_024698.1
sequence date: 2019-04-08
sequence: sequence
division: CON
label: NC_024698.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA258180
dblink: SAMN02143031
keyword: RefSeq
source: mitochondrion Corvus cornix cornix
organism: Corvus cornix cornix
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus.
reference: 1
references: 24948738
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM002877.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: AllPaths v. Allpaths-LG version 41687\nAssembly Name :: Hooded_Crow_genome\nLong Assembly Name :: None\nGenome Coverage :: 152.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16946
topology: circular
so has quality: SO_0000988
location: 1..16946
location: region:1-16946:1
RO_0002162: 932674

NC_024698
type: RefSeq
SIO_000068: refseq

PRJNA258180
type: BioProject
SIO_000068: bioproject

SAMN02143031
type: BioSample
SIO_000068: biosample

1
title: The genomic landscape underlying phenotypic integrity in the face of gene flow in crows
author: Poelstra, J.W.
author: Vijay, N.
author: Bossu, C.M.
author: Lantz, H.
author: Ryll, B.
author: Muller, I.
author: Baglione, V.
author: Unneberg, P.
author: Wikelski, M.
author: Grabherr, M.G.
author: Wolf, J.B.
journal: Science
volume: 344
issue: 6190
pages: 1410-1414
year: 2014
pubmed: 24948738

24948738
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (13-AUG-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Poelstra, J.W.
author: Vijay, N.
author: Bossu, C.
author: Lantz, H.
author: Ryll, B.
author: Muller, I.
author: Baglione, V.
author: Unneberg, P.
author: Wikelski, M.
author: Grabherr, M.G.
author: Wolf, J.B.
journal: Submitted (29-JUL-2014) Evolutionary Biology, Evolutionary Biology Center, Uppsala University, Norbyvagen 18D, Uppsala, Sweden

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16946:1
position: 16946
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16946:1:source
so part of: sequence
organism: Corvus cornix cornix
organelle: mitochondrion
mol type: genomic DNA
isolate: S_Up_H32
sub species: cornix
sex: male
tissue type: blood
country: Sweden: Uppsala
collection date: 2010

932674
type: Taxonomy
SIO_000068: taxonomy

JS54_p01
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: COX3
locus tag: JS54_p01
so part of: sequence
location: join(16890..16946,1..727)
location: region:1-16946:1
so has part: feature:16890-16946:1:exon
so has part: feature:1-727:1:exon
subclass of: SO_0000010

20160640
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:16890-16946:1:exon

position:16890:1
position: 16890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-727:1:exon

position:727:1
position: 727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

JS54_p01
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: COX3
locus tag: JS54_p01
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:727,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MTHQAHSYHMVDPSPWPILGAAAALLTTSGLTMWFHYNSPYLLIMGLTSTALVMLQWWRDIIRESTFQGHHTPTVQKGLRYGMVLFITSEAFFFLGFFWAFFHSSLAPTPELGGQWPPVGIKPLNPMDVPLLNTAILLASGVTVTWAHHSIMEANRKQAIHALTLTVLLGFYFTGLQAMEYYEAPFSIADGVYGSTFFVATGFHGLHVIIGSTFLLVCLLRLIKYHFTPKHHFGFEAAAWYWHFVDVVWLFLYMTIYWWGS
SIO_010081: JS54_p01
subclass of: SO_0000673
so part of: JS54_p01
location: join(16890..16946,1..727)
location: region:1-16946:1
so has part: feature:16890-16946:1:exon
so has part: feature:1-727:1:exon

YP_009054803.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16890-16946:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-727:1:exon

JS54_t01
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t01
so part of: sequence
location: 727..797
location: region:727-797:1
so has part: feature:727-797:1:exon
subclass of: SO_0000663

39690016
type: Gene
SIO_000068: ncbigene

position:797:1
position: 797
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:727-797:1:exon

JS54_t01
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t01
product: tRNA-Gly
SIO_010081: JS54_t01
subclass of: SO_0000673
so part of: JS54_t01
location: 727..797
location: region:727-797:1
so has part: feature:727-797:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:727-797:1:exon

JS54_p13
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND3
locus tag: JS54_p13
so part of: sequence
location: 797..1146
location: region:797-1146:1
so has part: feature:797-1146:1:exon
subclass of: SO_0000010

20160633
type: Gene
SIO_000068: ncbigene

position:1146:1
position: 1146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:797-1146:1:exon

JS54_p13
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND3
locus tag: JS54_p13
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:1145..1146,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNMILFMMISSLTLSVILTALNFWLAQMNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLQTPTTTLTWASILILLLTLGLVYEWSQGGLEWAE
SIO_010081: JS54_p13
subclass of: SO_0000673
so part of: JS54_p13
location: 797..1146
location: region:797-1146:1
so has part: feature:797-1146:1:exon

YP_009054804.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:797-1146:1:exon

JS54_t02
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t02
so part of: sequence
location: 1149..1218
location: region:1149-1218:1
so has part: feature:1149-1218:1:exon
subclass of: SO_0000663

39690017
type: Gene
SIO_000068: ncbigene

position:1149:1
position: 1149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1218:1
position: 1218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1149-1218:1:exon

JS54_t02
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t02
product: tRNA-Arg
SIO_010081: JS54_t02
subclass of: SO_0000673
so part of: JS54_t02
location: 1149..1218
location: region:1149-1218:1
so has part: feature:1149-1218:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1149-1218:1:exon

JS54_p12
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND4L
locus tag: JS54_p12
so part of: sequence
location: 1220..1516
location: region:1220-1516:1
so has part: feature:1220-1516:1:exon
subclass of: SO_0000010

20160634
type: Gene
SIO_000068: ncbigene

position:1220:1
position: 1220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1516:1
position: 1516
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1220-1516:1:exon

JS54_p12
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND4L
locus tag: JS54_p12
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSALQLSFFSAFTLSSLGLAFHRTHLISALLCLESMMLSMYIALSMWPIQTQTTSATLLPLLMLAFSACEAATGLALLVASTRTHGSDHLHNFNLLQC
SIO_010081: JS54_p12
subclass of: SO_0000673
so part of: JS54_p12
location: 1220..1516
location: region:1220-1516:1
so has part: feature:1220-1516:1:exon

YP_009054805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1220-1516:1:exon

JS54_p11
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND4
locus tag: JS54_p11
so part of: sequence
location: 1510..2887
location: region:1510-2887:1
so has part: feature:1510-2887:1:exon
subclass of: SO_0000010

20160635
type: Gene
SIO_000068: ncbigene

position:1510:1
position: 1510
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2887:1
position: 2887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1510-2887:1:exon

JS54_p11
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND4
locus tag: JS54_p11
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:2887,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIIVPTIMLLPLTILSPCKHLWTNTTAHSLLIAAVSLQWLVPTYYPSKGLTHWTSIDQISSPLLVLSCWLLPLMLMASQNHLEQEPIIRKRVFITTMITVQPFILLAFSASELMLFYIAFEATLIPTLILITRWGNQPERLNAGIYLLFYTLASSLPLLITILHLHNQIGTLYFPMLKLSHPTMNNSWTGLLASLALLLAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRITILVDPSVNNLHYPFITLALWGAVMTSAICLRQIDLKSLIAYSSVSHMGLVIAATMIQTQWAFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIVVALFNWSPLTMILTGTTIVLTASYTLHMLMMTQRGMLPSHITSIQNSSTREHLLMALHMIPMILLIFKPELISGIPM
SIO_010081: JS54_p11
subclass of: SO_0000673
so part of: JS54_p11
location: 1510..2887
location: region:1510-2887:1
so has part: feature:1510-2887:1:exon

YP_009054806.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1510-2887:1:exon

JS54_t03
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t03
so part of: sequence
location: 2888..2956
location: region:2888-2956:1
so has part: feature:2888-2956:1:exon
subclass of: SO_0000663

39690018
type: Gene
SIO_000068: ncbigene

position:2888:1
position: 2888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2956:1
position: 2956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2888-2956:1:exon

JS54_t03
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t03
product: tRNA-His
SIO_010081: JS54_t03
subclass of: SO_0000673
so part of: JS54_t03
location: 2888..2956
location: region:2888-2956:1
so has part: feature:2888-2956:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2888-2956:1:exon

JS54_t04
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t04
so part of: sequence
location: 2958..3023
location: region:2958-3023:1
so has part: feature:2958-3023:1:exon
subclass of: SO_0000663

39690021
type: Gene
SIO_000068: ncbigene

position:2958:1
position: 2958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3023:1
position: 3023
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2958-3023:1:exon

JS54_t04
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t04
product: tRNA-Ser
SIO_010081: JS54_t04
subclass of: SO_0000673
so part of: JS54_t04
location: 2958..3023
location: region:2958-3023:1
so has part: feature:2958-3023:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2958-3023:1:exon

JS54_t05
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t05
so part of: sequence
location: 3021..3093
location: region:3021-3093:1
so has part: feature:3021-3093:1:exon
subclass of: SO_0000663

39690022
type: Gene
SIO_000068: ncbigene

position:3021:1
position: 3021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3093:1
position: 3093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3021-3093:1:exon

JS54_t05
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t05
product: tRNA-Leu
SIO_010081: JS54_t05
subclass of: SO_0000673
so part of: JS54_t05
location: 3021..3093
location: region:3021-3093:1
so has part: feature:3021-3093:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:3021-3093:1:exon

JS54_p10
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND5
locus tag: JS54_p10
so part of: sequence
location: 3093..4910
location: region:3093-4910:1
so has part: feature:3093-4910:1:exon
subclass of: SO_0000010

20160636
type: Gene
SIO_000068: ncbigene

position:4910:1
position: 4910
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3093-4910:1:exon

JS54_p10
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND5
locus tag: JS54_p10
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MDQMFILNTFMLLTLAVLCTPIIFPMLSDNLKNTPTIITNTVKTSFLISLIPMTIYIHSGMESLTSFWEWKFIMNFKIPISLTMDFYSLTFFPIALFVSWSILQFATWYMASDPHITKFFTFLLLFLIAMLILIISNNLFLLFIGWEGVGIMSFLLISWWHGRAEANTAALQAVLYNRVGDVGLILCMAWLASTMNTWEIQQISSQDQTPTLPLLGLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLFHNNPTALSLCLCLGALSTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNLPQLAFLHISTHAFFKAMLFLCSGSIIHSLNGEQDIRKMGGLQKMLPTTTSCLTIGNLALMGTPFLAGFYSKDQIIECLNTSYLNAWALVLTLLATSFTAVYTMRMTLLVQTGYVRIPPLTPMNENNPAVLSSITRLALGSIMAGFLITSYIPPAKTPPMTMPLSIKITALVVTLLGIMLALELSKMTQALILPKQNRFSNFSTTLGYFNPLVHRFISTKLLSGGQNIASHLIDLSWYKLMGPEGLANLQVMASKTATSFHTGLIKAYLGSFALSIFIILLSTY
SIO_010081: JS54_p10
subclass of: SO_0000673
so part of: JS54_p10
location: 3093..4910
location: region:3093-4910:1
so has part: feature:3093-4910:1:exon

YP_009054807.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3093-4910:1:exon

JS54_p09
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: CYTB
locus tag: JS54_p09
so part of: sequence
location: 4921..6063
location: region:4921-6063:1
so has part: feature:4921-6063:1:exon
subclass of: SO_0000010

20160637
type: Gene
SIO_000068: ncbigene

position:4921:1
position: 4921
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6063:1
position: 6063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4921-6063:1:exon

JS54_p09
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: CYTB
locus tag: JS54_p09
codon start: 1
transl table: 2
product: cytochrome b
translation: MALNLRKNHPLLKIINNSLVDLPTPSNISAWWNFGSLLGLCLITQIITGLLLAMHYTADTSLAFTSVAHTCRNVQFGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLNKETWNIGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWLWGGFSVDNPTLTRFFAFHFLLPFVIAGLTLVHLTFLHETGSNNPLGIPSDCDKIPFHPYYSIKDLLGFALMLIPFIALALFSPNLLGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLLPFLHVSKQRSMTFRPLSQILFWILVADLFILTWVGSQPVEHPFIIIGQLASFTYFAIILILFPIASALENKMLKL
SIO_010081: JS54_p09
subclass of: SO_0000673
so part of: JS54_p09
location: 4921..6063
location: region:4921-6063:1
so has part: feature:4921-6063:1:exon

YP_009054808.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4921-6063:1:exon

JS54_t06
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t06
so part of: sequence
location: 6066..6139
location: region:6066-6139:1
so has part: feature:6066-6139:1:exon
subclass of: SO_0000663

39690019
type: Gene
SIO_000068: ncbigene

position:6066:1
position: 6066
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6139:1
position: 6139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6066-6139:1:exon

JS54_t06
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t06
product: tRNA-Thr
SIO_010081: JS54_t06
subclass of: SO_0000673
so part of: JS54_t06
location: 6066..6139
location: region:6066-6139:1
so has part: feature:6066-6139:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6066-6139:1:exon

JS54_t07
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t07
so part of: sequence
location: complement(6145..6216)
location: region:6145-6216:-1
so has part: feature:6145-6216:-1:exon
subclass of: SO_0000663

39690023
type: Gene
SIO_000068: ncbigene

position:6145:-1
position: 6145
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6216:-1
position: 6216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6145-6216:-1:exon

JS54_t07
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t07
product: tRNA-Pro
SIO_010081: JS54_t07
subclass of: SO_0000673
so part of: JS54_t07
location: complement(6145..6216)
location: region:6145-6216:-1
so has part: feature:6145-6216:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6145-6216:-1:exon

JS54_p08
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND6
locus tag: JS54_p08
so part of: sequence
location: complement(6225..6746)
location: region:6225-6746:-1
so has part: feature:6225-6746:-1:exon
subclass of: SO_0000010

20160638
type: Gene
SIO_000068: ncbigene

position:6225:-1
position: 6225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6746:-1
position: 6746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6225-6746:-1:exon

JS54_p08
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND6
locus tag: JS54_p08
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MMNFVLFMSLCFVLGGLAVASNPSPYYGVVGLVVASIAGCAWLASMGVSFVSLVLVMVYLGGMLVVFVYSVSLAADPYPESWGDWRVVGYGLGLGLVVVVVGVVVGAFSEVVMGGDTVNNGGLSWIRTDFSGVAVFYSSGSGLLLIAGWGLLLTLFVVLELVRGLSRGAIRAV
SIO_010081: JS54_p08
subclass of: SO_0000673
so part of: JS54_p08
location: complement(6225..6746)
location: region:6225-6746:-1
so has part: feature:6225-6746:-1:exon

YP_009054809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6225-6746:-1:exon

JS54_t08
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t08
so part of: sequence
location: complement(6747..6820)
location: region:6747-6820:-1
so has part: feature:6747-6820:-1:exon
subclass of: SO_0000663

39690020
type: Gene
SIO_000068: ncbigene

position:6747:-1
position: 6747
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6820:-1
position: 6820
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6747-6820:-1:exon

JS54_t08
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t08
product: tRNA-Glu
SIO_010081: JS54_t08
subclass of: SO_0000673
so part of: JS54_t08
location: complement(6747..6820)
location: region:6747-6820:-1
so has part: feature:6747-6820:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6747-6820:-1:exon

JS54_t09
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t09
so part of: sequence
location: 8176..8244
location: region:8176-8244:1
so has part: feature:8176-8244:1:exon
subclass of: SO_0000663

39690024
type: Gene
SIO_000068: ncbigene

position:8176:1
position: 8176
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8244:1
position: 8244
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8176-8244:1:exon

JS54_t09
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t09
product: tRNA-Phe
SIO_010081: JS54_t09
subclass of: SO_0000673
so part of: JS54_t09
location: 8176..8244
location: region:8176-8244:1
so has part: feature:8176-8244:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8176-8244:1:exon

JS54_r02
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_r02
so part of: sequence
location: 8245..9222
location: region:8245-9222:1
so has part: feature:8245-9222:1:exon
subclass of: SO_0000573

39690025
type: Gene
SIO_000068: ncbigene

position:8245:1
position: 8245
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9222:1
position: 9222
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8245-9222:1:exon

JS54_r02
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 932674
locus tag: JS54_r02
product: s-rRNA
note: 12S ribosomal RNA
SIO_010081: JS54_r02
subclass of: SO_0000673
so part of: JS54_r02
location: 8245..9222
location: region:8245-9222:1
so has part: feature:8245-9222:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:8245-9222:1:exon

JS54_t10
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t10
so part of: sequence
location: 9223..9292
location: region:9223-9292:1
so has part: feature:9223-9292:1:exon
subclass of: SO_0000663

39690026
type: Gene
SIO_000068: ncbigene

position:9223:1
position: 9223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9292:1
position: 9292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9223-9292:1:exon

JS54_t10
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t10
product: tRNA-Val
SIO_010081: JS54_t10
subclass of: SO_0000673
so part of: JS54_t10
location: 9223..9292
location: region:9223-9292:1
so has part: feature:9223-9292:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9223-9292:1:exon

JS54_r01
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_r01
so part of: sequence
location: 9293..10894
location: region:9293-10894:1
so has part: feature:9293-10894:1:exon
subclass of: SO_0000573

39690027
type: Gene
SIO_000068: ncbigene

position:9293:1
position: 9293
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10894:1
position: 10894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9293-10894:1:exon

JS54_r01
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 932674
locus tag: JS54_r01
product: l-rRNA
note: 16S ribosomal RNA
SIO_010081: JS54_r01
subclass of: SO_0000673
so part of: JS54_r01
location: 9293..10894
location: region:9293-10894:1
so has part: feature:9293-10894:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9293-10894:1:exon

JS54_t11
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t11
so part of: sequence
location: 10895..10969
location: region:10895-10969:1
so has part: feature:10895-10969:1:exon
subclass of: SO_0000663

39690028
type: Gene
SIO_000068: ncbigene

position:10895:1
position: 10895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10969:1
position: 10969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10895-10969:1:exon

JS54_t11
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t11
product: tRNA-Leu
codon recognized: UUR
SIO_010081: JS54_t11
subclass of: SO_0000673
so part of: JS54_t11
location: 10895..10969
location: region:10895-10969:1
so has part: feature:10895-10969:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10895-10969:1:exon

JS54_p07
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND1
locus tag: JS54_p07
so part of: sequence
location: 10980..11957
location: region:10980-11957:1
so has part: feature:10980-11957:1:exon
subclass of: SO_0000010

20160639
type: Gene
SIO_000068: ncbigene

position:10980:1
position: 10980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11957:1
position: 11957
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10980-11957:1:exon

JS54_p07
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND1
locus tag: JS54_p07
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MTNYPILVNLIMALSYAIPILIAVAFLTLVERKILSYMQGRKGPNVVGPFGLLQPVADGVKLFIKEPIRPSTSSPILFITTPMLALLLAISIWTPLPIPFPLADLNLGLLFMLAMSSLAVYSILWSGWASNSKYALIGSLRAVAQTISYEVTLAIILLSIILLSGNYTLSTLAVVQEPLFLIFSCWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTVILFLNPSLYNPPQELFPVILATKVLLLSMGFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCLWHISMPISYAGLPPYL
SIO_010081: JS54_p07
subclass of: SO_0000673
so part of: JS54_p07
location: 10980..11957
location: region:10980-11957:1
so has part: feature:10980-11957:1:exon

YP_009054810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10980-11957:1:exon

JS54_t12
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t12
so part of: sequence
location: 11966..12039
location: region:11966-12039:1
so has part: feature:11966-12039:1:exon
subclass of: SO_0000663

39690012
type: Gene
SIO_000068: ncbigene

position:11966:1
position: 11966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12039:1
position: 12039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11966-12039:1:exon

JS54_t12
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t12
product: tRNA-Ile
SIO_010081: JS54_t12
subclass of: SO_0000673
so part of: JS54_t12
location: 11966..12039
location: region:11966-12039:1
so has part: feature:11966-12039:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11966-12039:1:exon

JS54_t13
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t13
so part of: sequence
location: complement(12045..12115)
location: region:12045-12115:-1
so has part: feature:12045-12115:-1:exon
subclass of: SO_0000663

39690029
type: Gene
SIO_000068: ncbigene

position:12045:-1
position: 12045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12115:-1
position: 12115
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12045-12115:-1:exon

JS54_t13
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t13
product: tRNA-Gln
SIO_010081: JS54_t13
subclass of: SO_0000673
so part of: JS54_t13
location: complement(12045..12115)
location: region:12045-12115:-1
so has part: feature:12045-12115:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12045-12115:-1:exon

JS54_t14
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t14
so part of: sequence
location: 12115..12183
location: region:12115-12183:1
so has part: feature:12115-12183:1:exon
subclass of: SO_0000663

39690030
type: Gene
SIO_000068: ncbigene

position:12115:1
position: 12115
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12183:1
position: 12183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12115-12183:1:exon

JS54_t14
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t14
product: tRNA-Met
SIO_010081: JS54_t14
subclass of: SO_0000673
so part of: JS54_t14
location: 12115..12183
location: region:12115-12183:1
so has part: feature:12115-12183:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12115-12183:1:exon

JS54_p06
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ND2
locus tag: JS54_p06
so part of: sequence
location: 12184..13224
location: region:12184-13224:1
so has part: feature:12184-13224:1:exon
subclass of: SO_0000010

20160628
type: Gene
SIO_000068: ncbigene

position:12184:1
position: 12184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13224:1
position: 13224
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12184-13224:1:exon

JS54_p06
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ND2
locus tag: JS54_p06
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPQAKLIFVTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASTLVLFSSMTNAWYTGQWDITQLTHPTSSLILTAAISMKLGLVPFHFWFPEVLQGSPIITGLLLSTVMKFPPITLLYMTSLSLNPTLLTTLAILSVALGGWMGLNQTQTRKIMAFSSISHLGWMAIILIYYPKLTLLNFYLYAMMTAAVFLTLNSMKVLNLSTLMTAWTKAPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAAIIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPINPSIAVLTTLSIMLLPISPMLTTII
SIO_010081: JS54_p06
subclass of: SO_0000673
so part of: JS54_p06
location: 12184..13224
location: region:12184-13224:1
so has part: feature:12184-13224:1:exon

YP_009054811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12184-13224:1:exon

JS54_t15
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t15
so part of: sequence
location: 13227..13296
location: region:13227-13296:1
so has part: feature:13227-13296:1:exon
subclass of: SO_0000663

39690013
type: Gene
SIO_000068: ncbigene

position:13227:1
position: 13227
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13296:1
position: 13296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13227-13296:1:exon

JS54_t15
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t15
product: tRNA-Trp
SIO_010081: JS54_t15
subclass of: SO_0000673
so part of: JS54_t15
location: 13227..13296
location: region:13227-13296:1
so has part: feature:13227-13296:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13227-13296:1:exon

JS54_t16
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t16
so part of: sequence
location: complement(13298..13366)
location: region:13298-13366:-1
so has part: feature:13298-13366:-1:exon
subclass of: SO_0000663

39690031
type: Gene
SIO_000068: ncbigene

position:13298:-1
position: 13298
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13366:-1
position: 13366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13298-13366:-1:exon

JS54_t16
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t16
product: tRNA-Ala
SIO_010081: JS54_t16
subclass of: SO_0000673
so part of: JS54_t16
location: complement(13298..13366)
location: region:13298-13366:-1
so has part: feature:13298-13366:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13298-13366:-1:exon

JS54_t17
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t17
so part of: sequence
location: complement(13373..13446)
location: region:13373-13446:-1
so has part: feature:13373-13446:-1:exon
subclass of: SO_0000663

39690032
type: Gene
SIO_000068: ncbigene

position:13373:-1
position: 13373
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13446:-1
position: 13446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13373-13446:-1:exon

JS54_t17
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t17
product: tRNA-Asn
SIO_010081: JS54_t17
subclass of: SO_0000673
so part of: JS54_t17
location: complement(13373..13446)
location: region:13373-13446:-1
so has part: feature:13373-13446:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13373-13446:-1:exon

JS54_t18
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t18
so part of: sequence
location: complement(13449..13515)
location: region:13449-13515:-1
so has part: feature:13449-13515:-1:exon
subclass of: SO_0000663

39690033
type: Gene
SIO_000068: ncbigene

position:13449:-1
position: 13449
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13515:-1
position: 13515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13449-13515:-1:exon

JS54_t18
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t18
product: tRNA-Cys
SIO_010081: JS54_t18
subclass of: SO_0000673
so part of: JS54_t18
location: complement(13449..13515)
location: region:13449-13515:-1
so has part: feature:13449-13515:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13449-13515:-1:exon

JS54_t19
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t19
so part of: sequence
location: complement(13515..13585)
location: region:13515-13585:-1
so has part: feature:13515-13585:-1:exon
subclass of: SO_0000663

39690034
type: Gene
SIO_000068: ncbigene

position:13585:-1
position: 13585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13515-13585:-1:exon

JS54_t19
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t19
product: tRNA-Tyr
SIO_010081: JS54_t19
subclass of: SO_0000673
so part of: JS54_t19
location: complement(13515..13585)
location: region:13515-13585:-1
so has part: feature:13515-13585:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13515-13585:-1:exon

JS54_p05
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: COX1
locus tag: JS54_p05
so part of: sequence
location: 13587..15137
location: region:13587-15137:1
so has part: feature:13587-15137:1:exon
subclass of: SO_0000010

20160629
type: Gene
SIO_000068: ncbigene

position:13587:1
position: 13587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15137:1
position: 15137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13587-15137:1:exon

JS54_p05
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: COX1
locus tag: JS54_p05
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTFINRWLFSTNHKDIGTLYLIFGAWAGMVGTALSLLIRAELGQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPALSQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLFTGYTLHSTWAKIHFGVMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSVGSLISLTAVIMLMFIIWEAFASKRKALQPELVNTNVEWIHGCPPPFHTFEEPAFVQVQE
SIO_010081: JS54_p05
subclass of: SO_0000673
so part of: JS54_p05
location: 13587..15137
location: region:13587-15137:1
so has part: feature:13587-15137:1:exon

YP_009054812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13587-15137:1:exon

JS54_t20
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t20
so part of: sequence
location: complement(15129..15201)
location: region:15129-15201:-1
so has part: feature:15129-15201:-1:exon
subclass of: SO_0000663

39690014
type: Gene
SIO_000068: ncbigene

position:15129:-1
position: 15129
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15201:-1
position: 15201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15129-15201:-1:exon

JS54_t20
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t20
product: tRNA-Ser
codon recognized: UCN
SIO_010081: JS54_t20
subclass of: SO_0000673
so part of: JS54_t20
location: complement(15129..15201)
location: region:15129-15201:-1
so has part: feature:15129-15201:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15129-15201:-1:exon

JS54_t21
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t21
so part of: sequence
location: 15207..15276
location: region:15207-15276:1
so has part: feature:15207-15276:1:exon
subclass of: SO_0000663

39690035
type: Gene
SIO_000068: ncbigene

position:15207:1
position: 15207
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15276:1
position: 15276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15207-15276:1:exon

JS54_t21
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t21
product: tRNA-Asp
SIO_010081: JS54_t21
subclass of: SO_0000673
so part of: JS54_t21
location: 15207..15276
location: region:15207-15276:1
so has part: feature:15207-15276:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15207-15276:1:exon

JS54_p04
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: COX2
locus tag: JS54_p04
so part of: sequence
location: 15285..15968
location: region:15285-15968:1
so has part: feature:15285-15968:1:exon
subclass of: SO_0000010

20160630
type: Gene
SIO_000068: ncbigene

position:15285:1
position: 15285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15968:1
position: 15968
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15285-15968:1:exon

JS54_p04
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: COX2
locus tag: JS54_p04
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MANHMQFGFQDASSPIMEELVEFHDHALMTALAICSLVLYLLTMMLTEKLSSSTVDAQEIELVWTILPAIVLIMLALPSLQILYMMDEINEPDLTLKAIGHQWYWTYEYTDFKDLTFDSYMTPTADLPLGHFRLLEVDHRVVVPMESLVRVIVTADDVLHSWAVPSLGVKTDAIPGRLNQTSFTATRPGVFYGQCSEICGANHSFMPIVVESAPLANFESWSSLLSS
SIO_010081: JS54_p04
subclass of: SO_0000673
so part of: JS54_p04
location: 15285..15968
location: region:15285-15968:1
so has part: feature:15285-15968:1:exon

YP_009054813.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15285-15968:1:exon

JS54_t22
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
locus tag: JS54_t22
so part of: sequence
location: 15970..16039
location: region:15970-16039:1
so has part: feature:15970-16039:1:exon
subclass of: SO_0000663

39690015
type: Gene
SIO_000068: ncbigene

position:15970:1
position: 15970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16039:1
position: 16039
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15970-16039:1:exon

JS54_t22
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 932674
locus tag: JS54_t22
product: tRNA-Lys
SIO_010081: JS54_t22
subclass of: SO_0000673
so part of: JS54_t22
location: 15970..16039
location: region:15970-16039:1
so has part: feature:15970-16039:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15970-16039:1:exon

JS54_p03
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ATP8
locus tag: JS54_p03
so part of: sequence
location: 16041..16208
location: region:16041-16208:1
so has part: feature:16041-16208:1:exon
subclass of: SO_0000010

20160631
type: Gene
SIO_000068: ncbigene

position:16041:1
position: 16041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16208:1
position: 16208
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16041-16208:1:exon

JS54_p03
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ATP8
locus tag: JS54_p03
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPNPWFFIMLTSWLTYSMIIQPKLLSFISMNPPLNKAQTTKTTTPWTWPWT
SIO_010081: JS54_p03
subclass of: SO_0000673
so part of: JS54_p03
location: 16041..16208
location: region:16041-16208:1
so has part: feature:16041-16208:1:exon

YP_009054814.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16041-16208:1:exon

JS54_p02
type: Gene
subclass of: SO_0000704
RO_0002162: 932674
gene: ATP6
locus tag: JS54_p02
so part of: sequence
location: 16199..16882
location: region:16199-16882:1
so has part: feature:16199-16882:1:exon
subclass of: SO_0000010

20160632
type: Gene
SIO_000068: ncbigene

position:16199:1
position: 16199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16882:1
position: 16882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16199-16882:1:exon

JS54_p02
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 932674
gene: ATP6
locus tag: JS54_p02
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNLSFFNQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWFISLVTKQLMMPLSNKGHKWALILTSLMIFLLLINLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSVSLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAALISTMPMVSLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI
SIO_010081: JS54_p02
subclass of: SO_0000673
so part of: JS54_p02
location: 16199..16882
location: region:16199-16882:1
so has part: feature:16199-16882:1:exon

YP_009054815.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16199-16882:1:exon