Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence.
Clostridium saccharoperbutylacetonicum N1-4(HMT)
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete Genome Sequence of the Solvent Producer Clostridium saccharoperbutylacetonicum Strain DSM 14923
Genome sequence of Clostridium saccharoperbutylacetonicum N1-4(HMT)
Submitted (06-FEB-2013) Genomic and Applied Microbiology and Goettingen Genomics Laboratory, Georg-August-University-Goettingen, Grisebachstr. 8, Goettingen, Lower Saxon 37077, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP004122.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Assembly-Data-START##\nAssembly Method :: Mira v. 3.2\nCoverage :: 58.29\nSequencing Technology :: Sanger dideoxy sequencing; 454; Illumina\n##Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/12/2023 01:57:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,991\nCDSs (total) :: 5,881\nGenes (coding) :: 5,819\nCDSs (with protein) :: 5,819\nGenes (RNA) :: 110\nrRNAs :: 13, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 13, 11, 11 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 5\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 18 of 62\nPseudo Genes (incomplete) :: 44 of 62\nPseudo Genes (internal stop) :: 15 of 62\nPseudo Genes (multiple problems) :: 13 of 62\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Clostridium saccharoperbutylacetonicum
COORDINATES: similar to AA sequence:RefSeq:WP_015395868.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015395869.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395870.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395871.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395872.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395873.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395874.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395875.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913626.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395876.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395877.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395878.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395879.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015395881.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395882.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395883.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395884.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395885.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395886.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395887.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395888.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395889.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395890.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395891.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395892.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395893.1
GO:0042834 - peptidoglycan binding [Evidence IEA]
peptidoglycan-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015395894.1
GO:0070064 - proline-rich region binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015395895.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395896.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395897.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395899.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395900.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015395901.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395903.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395904.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395905.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395906.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395908.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395910.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395911.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395912.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395913.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395914.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395915.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395916.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395917.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395918.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395919.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395921.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395922.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395923.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395924.1
COORDINATES: protein motif:HMM:NF024220.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015395926.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395927.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395928.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395929.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395930.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395931.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395932.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395933.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395934.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395935.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395936.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015395937.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395938.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395939.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395940.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395941.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395944.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395945.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_015395946.1
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF015513.2
COORDINATES: similar to AA sequence:RefSeq:WP_015395948.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395949.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395950.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395951.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395952.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395953.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015395954.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140662 - ATP-dependent protein folding chaperone [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015395955.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395957.1
COORDINATES: similar to AA sequence:RefSeq:WP_016294700.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015395959.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395960.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395961.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395962.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395964.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395966.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395967.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395968.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395969.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395970.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395971.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395972.1
COORDINATES: similar to AA sequence:RefSeq:WP_015395973.1